Citrus Sinensis ID: 013567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MESLAAAAVPLKAKLGVCHQLCFSPFNMKTHSCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEEF
Secondary Structure (PSIPRED)
cHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEccccccccEEEEccccHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHcccccccEEcccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEcHHHHHcccccccccccccccEEEEEEEEEcEEEcccccccccccccccEEEEEEEEccccccccEEEEEEEEcccccccccHHHHHHHcccEEEccccEEEccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcHHHHHHcccccccccccccccccEEEEEccccccccccccHHEEccHHHHHHHHHcccEEEcccccccccHccccccccccHHHHHHHHHHHHHHHcccccEEEccccccccEEEEcccccHHHEHccccccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcHHcccHHHHHHHcccHHHHEEcccccHHHHHHHHHHHHHcccEEEEEEEcHHEEcccHEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHEEEcccccccccccHHHEEEEEEEEEEEHcccEccccccEEccccEEEEEEccccccccEEEEEEEEcccccccccHEEHccccccEEccccEEEEccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccHHHHccHcc
Coil and Loop (DISEMBL)
MESLAAAAVPLKAklgvchqlcfspfnmkthscllsisssplhcqssrsrfftASSKLSAArkrdkkiscefdgkvngfssdsgdsRFLDRQRALDAAMNDinssfgkgsvtrlgsaggalvetfpsgcltldlalggglpkgriveifgpessgktTLALHAIAEVQKLGgnamlvdaehafdpsyskalgvdvenlivcqpdngeMALEIADRMCRSGAIDLICVdsvsaltpraeiegeiGMQQIGLQARLMSQALRKMsgnaskagCTLIFLNQIRYKIGvyygnpevtsggiALKFFASVRLEIrstgkiksvkgdedvgVRVRVRVQkskvsrpykqaeFEIIFGEGVSKLGCMLDCAEMMDIVVRKgawysygdqrlgqGRDKALQYLRDNPLLQEEIEKVVRSMMsdgsvhqgsflrnvslpnqeenileef
Flexible Loop (DISEMBL)
MESLAAAAVPLKAKLGVCHQLCFSPFNMKTHSCLLSISSSPLHCQSSRSRFftassklsaarkrdkkiscefdgkvngfssdsgdsrFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEirstgkiksvkgdedvgvrvrvrvqkskvsrpykqaefeiifgegvSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGsvhqgsflrnvslpnqeenileef
Low Complexity Region (SEG)
MESlaaaavplkaklGVCHQLCFSPFNMKTHSCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSvkgdedvgvrvrvrvqkskvsrPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEEF
Disordered region (IsUnstruct)
******AAVPLKAKLGVCHQLCFSPFNMKTHSCLLSIS************************************************************************VTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQAL*****NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLL***************************************
Disordered Region (DISOPRED)
**************LGVCHQLCFSPFNMKTHSCLLSISS*********************************************************AAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS*****************************
Disordered Region (DISEMBL)
MESLAAAAVPLKAKLGVCHQLCFSPFNMKTHSCLLSISSS**************************KISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEEF
Disordered Region (DISPRO)
**SLAAAAVPLKAKLGVCHQLCFSPFNMKTHSCLLSISSSP***********T***KLSAAR****KISCEFD*K*************LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDG************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLAAAAVPLKAKLGVCHQLCFSPFNMKTHSCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q39199	439	DNA repair protein recA h	yes	no	0.913	0.915	0.803	0.0
P48293	365	Protein RecA OS=Spirulina	N/A	no	0.743	0.895	0.610	1e-123
B7JZS9	349	Protein RecA OS=Cyanothec	yes	no	0.772	0.974	0.606	1e-120
Q8DH70	355	Protein RecA OS=Thermosyn	yes	no	0.725	0.898	0.626	1e-120
B1WW59	349	Protein RecA OS=Cyanothec	yes	no	0.743	0.936	0.618	1e-119
Q0ID00	382	Protein RecA OS=Synechoco	yes	no	0.772	0.890	0.599	1e-119
B7KLB5	356	Protein RecA OS=Cyanothec	yes	no	0.743	0.918	0.618	1e-119
Q7V547	379	Protein RecA OS=Prochloro	yes	no	0.740	0.860	0.606	1e-118
A2CC22	379	Protein RecA OS=Prochloro	yes	no	0.740	0.860	0.606	1e-118
Q111E0	360	Protein RecA OS=Trichodes	yes	no	0.743	0.908	0.604	1e-118

>sp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana GN=RECA PE=2 SV=1

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/402 (80%), Positives = 353/402 (87%)

Query: 23  FSPFNMKTHSCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD 82
           F+P +        S  S  L   S  SR   +   + AA+K   KIS EFD ++NG  S 
Sbjct: 15  FTPLSPLFPFTPCSSFSPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDRINGALSP 74

Query: 83  SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPK 142
             DSRFLDRQ+AL+AAMNDINSSFGKGSVTRLGSAGGALVETF SG LTLDLALGGGLPK
Sbjct: 75  DADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALGGGLPK 134

Query: 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQ 202
           GR+VEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP+YSKALGVDVENLIVCQ
Sbjct: 135 GRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQ 194

Query: 203 PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262
           PDNGEMALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKM
Sbjct: 195 PDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKM 254

Query: 263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDE 322
           SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS GKIKS KGDE
Sbjct: 255 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDE 314

Query: 323 DVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQ 382
           D+G+R RVRVQKSKVSRPYKQAEFEI+FGEGVSKLGC+LDCAE+M++VV+KG+WYSY DQ
Sbjct: 315 DIGLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQ 374

Query: 383 RLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFL 424
           RLGQGR+KALQ+LR+NP LQ+EIEK VR +M DG VH+ + L
Sbjct: 375 RLGQGREKALQHLRENPALQDEIEKKVRLLMLDGEVHRSTPL 416

Involved in recombination ability and DNA strand transfer activity.
Arabidopsis thaliana (taxid: 3702)

>sp|P48293|RECA_SPIPL Protein RecA OS=Spirulina platensis GN=recA PE=3 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 201/329 (61%), Positives = 267/329 (81%), Gaps = 2/329 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           ++Q+AL++ +N I  SFGKGS+ RLG +    VET  SG LTLDLALGGGLP+GR++EI+
Sbjct: 9   EKQKALNSVLNQIEKSFGKGSIVRLGDSARMKVETISSGALTLDLALGGGLPRGRVIEIY 68

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTLALHAIAE+QK GG A  VDAEHA DP+Y+ ALGVD+ENL+V QPD GEMA
Sbjct: 69  GPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGEMA 128

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D++ RS A+D++ VDSV+AL PRAEIEG++G   +GLQARLMSQALRK++GN  K+
Sbjct: 129 LEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNIGKS 188

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329
           GCT+IFLNQ+R KIG+ YGNPE T+GG ALKF+ASVRL+IR T  +K  KG ++ G+R +
Sbjct: 189 GCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLK--KGSDEYGIRAK 246

Query: 330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRD 389
           V+V K+KV+ P++ AEF+IIFG+G+S +GC++D AE   ++ RKGAWYSY ++ +GQGRD
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYSYNNENIGQGRD 306

Query: 390 KALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           + + Y+++NP   EEI+K VR+ ++ G+V
Sbjct: 307 RTITYMQENPAFTEEIDKRVRAALAGGAV 335

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Spirulina platensis (taxid: 118562)

>sp|B7JZS9|RECA_CYAP8 Protein RecA OS=Cyanothece sp. (strain PCC 8801) GN=recA PE=3 SV=1

 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/346 (60%), Positives = 270/346 (78%), Gaps = 6/346 (1%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           D+++AL   +N I  +FGKGS+ RLG A    VET  SG LTLDLALGGGLP+GRI+EI+
Sbjct: 9   DKEKALGLVLNQIERNFGKGSIMRLGDAARMRVETISSGSLTLDLALGGGLPQGRIIEIY 68

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTLALHAIAEVQK GG A  VDAEHA DP+YS ALGVD++NL+V QPD GE A
Sbjct: 69  GPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPNYSNALGVDIDNLLVAQPDTGESA 128

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D++ RS A+D++ +DSV+AL PRAEIEGE+G  Q+GLQARLMS+ALRK++GN  K+
Sbjct: 129 LEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIAGNIGKS 188

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDE-DVGVRV 328
           GC +IFLNQ+R KIGV YG+PEVT+GG ALKF+ASVRL+IR    +K  KG E + G+R 
Sbjct: 189 GCVVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLK--KGSEGEYGIRA 246

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           +V+V K+KV+ P++ AEF+IIFG+G+S++GCMLD AE  D+V RKGAWYSY  + + QGR
Sbjct: 247 KVKVAKNKVAPPFRIAEFDIIFGKGISRMGCMLDLAEQTDVVNRKGAWYSYNGENISQGR 306

Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 434
           D A++YL DNP + + IE+ VR  +  GS++   F  + +  N+EE
Sbjct: 307 DNAVKYLEDNPEVADTIERQVREKLELGSLN---FAISQTDDNEEE 349

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

>sp|Q8DH70|RECA_THEEB Protein RecA OS=Thermosynechococcus elongatus (strain BP-1) GN=recA PE=3 SV=1

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/321 (62%), Positives = 256/321 (79%), Gaps = 2/321 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           ++++AL+ A++ I  SFGKGS+ RLG A    VET  SG LTLDLALGGGLPKGRI+EI+
Sbjct: 12  EKRKALEFAISQIERSFGKGSIMRLGDATSMKVETISSGALTLDLALGGGLPKGRIIEIY 71

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTLALHAIAEVQK GG A  VDAEHA DP+Y+ AL VD++NL+V QPD GE A
Sbjct: 72  GPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYAAALRVDIQNLLVAQPDTGEAA 131

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D++ RS A+D+I VDSV+AL PRAEIEG++G   +GLQARLMSQALRK++GN SK 
Sbjct: 132 LEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGDMGESHVGLQARLMSQALRKINGNISKT 191

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329
           GCT+IFLNQ+R KIG+ YGNPE T+GG+ALKF+ASVRL+IR    +K  KG E+ G+R +
Sbjct: 192 GCTVIFLNQLRQKIGLTYGNPETTTGGVALKFYASVRLDIRRVQTLK--KGTEEFGIRAK 249

Query: 330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRD 389
           V+V K+KV+ P++ AEF+IIFG+G++ LGC+LD AE + ++ RKGAWYSY  + L QGRD
Sbjct: 250 VKVAKNKVAPPFRIAEFDIIFGKGIANLGCILDMAEEVGVITRKGAWYSYNGENLAQGRD 309

Query: 390 KALQYLRDNPLLQEEIEKVVR 410
             + Y+ +NP   +EIE+ VR
Sbjct: 310 NTINYMEENPSFAQEIEQQVR 330

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B1WW59|RECA_CYAA5 Protein RecA OS=Cyanothece sp. (strain ATCC 51142) GN=recA PE=3 SV=1

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/330 (61%), Positives = 260/330 (78%), Gaps = 3/330 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           D+++AL   +N I  +FGKGS+ RLG A    VET  +G LTLDLALGGGLP GR+VEI+
Sbjct: 9   DKEKALGLVLNQIERNFGKGSIMRLGDAARMKVETISTGALTLDLALGGGLPMGRVVEIY 68

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTLALHAIAEVQK GG A  VDAEHA DP+YS ALGVD+ NL+V QPD GE A
Sbjct: 69  GPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAALGVDINNLLVAQPDTGESA 128

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D++ RS A+D++ +DSV+AL PRAEIEGE+G  Q+GLQARLMS+ALRK++GN  K+
Sbjct: 129 LEIVDQLVRSAAVDVVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIAGNIGKS 188

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDE-DVGVRV 328
           GC +IFLNQ+R KIG+ YG+PEVT+GG ALKF+ASVRL+IR    +K  KG E + G+R 
Sbjct: 189 GCVVIFLNQLRQKIGITYGSPEVTTGGTALKFYASVRLDIRRIQTLK--KGSEGEYGIRA 246

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           +V+V K+KV+ P++ AEF+IIFG+G+S++GCMLD AE  D+V+RKGAWYSY    + QGR
Sbjct: 247 KVKVAKNKVAPPFRIAEFDIIFGQGISRMGCMLDLAEQSDVVLRKGAWYSYNGDNISQGR 306

Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           D A++YL +NP + E IE+ VR  +  GS+
Sbjct: 307 DNAVKYLEENPKIAETIEQQVREKLELGSL 336

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

>sp|Q0ID00|RECA_SYNS3 Protein RecA OS=Synechococcus sp. (strain CC9311) GN=recA PE=3 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/342 (59%), Positives = 260/342 (76%), Gaps = 2/342 (0%)

Query: 76  VNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLA 135
           V    S +GDSR  +R +ALD  +  I  +FGKGS+ RLG A    VET  +G LTLDLA
Sbjct: 5   VKAAQSSAGDSRPGERDKALDLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLA 64

Query: 136 LGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDV 195
           LGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +LGVD+
Sbjct: 65  LGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDI 124

Query: 196 ENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM 255
           ENL+V QPD GEMALEI D++ RS A+D++ VDSV+ALTPRAEIEGE+G   +G QARLM
Sbjct: 125 ENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGAQARLM 184

Query: 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKI 315
           SQA+RK++GN  K+GCT+IFLNQ+R KIGV YGNPE T+GG ALKF+ASVRL+IR    +
Sbjct: 185 SQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTL 244

Query: 316 KSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGA 375
           K  +G E+ G+R +V+V K+KV+ P++ AEF+I+FG G+S LGC+LD AE   +V RKGA
Sbjct: 245 K--RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGA 302

Query: 376 WYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 417
           WYSY    +GQGRD  + +L  NP  ++ IE +VR  +++GS
Sbjct: 303 WYSYEGDNIGQGRDNTIGWLEQNPEAKDAIEVLVRQKLTEGS 344

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Synechococcus sp. (strain CC9311) (taxid: 64471)

>sp|B7KLB5|RECA_CYAP7 Protein RecA OS=Cyanothece sp. (strain PCC 7424) GN=recA PE=3 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/330 (61%), Positives = 260/330 (78%), Gaps = 3/330 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           D+++AL+  +N I  SFGKGS+ RLG A    VET PSG LTLDLALGGGLPKGR++EI+
Sbjct: 9   DKEKALNLVLNQIERSFGKGSIMRLGDAARMRVETIPSGALTLDLALGGGLPKGRVIEIY 68

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTLALHAIAEVQK GG A  VDAEHA DP+YS+ LGVD+ NL+V QPD GE A
Sbjct: 69  GPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEVLGVDIHNLLVAQPDTGESA 128

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D++ RS A+D++ VDSV+AL PRAEIEGE+G  Q+GLQARLMS+ALRK++GN  K+
Sbjct: 129 LEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIAGNIGKS 188

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDE-DVGVRV 328
           GC +IFLNQ+R KIGV YG+PEVT+GG ALKF+ASVRL+IR    +K  KG E + G+R 
Sbjct: 189 GCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLK--KGSEGEYGIRA 246

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           +V+V K+KV+ P++ AEF+IIFG+G+S++GCM+D AE  D++ RKGAWYSY  + + QGR
Sbjct: 247 KVKVAKNKVAPPFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGENIAQGR 306

Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           D A++YL +N  +   IEK VR  +   S+
Sbjct: 307 DNAVKYLEENLDVAAIIEKQVREKLDIASL 336

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|Q7V547|RECA_PROMM Protein RecA OS=Prochlorococcus marinus (strain MIT 9313) GN=recA PE=3 SV=1

 Score =  427 bits (1097), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/328 (60%), Positives = 256/328 (78%), Gaps = 2/328 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           +R +AL+  +  I  +FGKGS+ RLG A    VETFP+G LTLDLALGGG PKGR+VE++
Sbjct: 24  ERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVVEVY 83

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTL LHAIAEVQ+ GG A  VDAEHA DP Y+ +LGVD+ENL+V QPD GEMA
Sbjct: 84  GPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMA 143

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D++ RS A+D++ VDSV+ALTPR+EIEGE+G   +G QARLMSQA+RK++GN  K+
Sbjct: 144 LEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKS 203

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329
           GCT+IFLNQ+R KIGV YGNPE T+GG ALKF+ASVRL+IR    +K  +G E+ G+R +
Sbjct: 204 GCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK--RGTEEYGIRAK 261

Query: 330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRD 389
           V+V K+KV+ P++ AEF+I+FG G+S LGC+LD AE   +V+RKGAWYSY    +GQGRD
Sbjct: 262 VKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRD 321

Query: 390 KALQYLRDNPLLQEEIEKVVRSMMSDGS 417
             + +L  N   QE+IE +VR  +++GS
Sbjct: 322 NTITWLEQNSEAQEQIEVLVRQKLTEGS 349

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

>sp|A2CC22|RECA_PROM3 Protein RecA OS=Prochlorococcus marinus (strain MIT 9303) GN=recA PE=3 SV=1

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/328 (60%), Positives = 256/328 (78%), Gaps = 2/328 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           +R +AL+  +  I  +FGKGS+ RLG A    VETFP+G LTLDLALGGG PKGR+VE++
Sbjct: 24  ERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVVEVY 83

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTL LHAIAEVQ+ GG A  VDAEHA DP Y+ +LGVD+ENL+V QPD GEMA
Sbjct: 84  GPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMA 143

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D++ RS A+D++ VDSV+ALTPR+EIEGE+G   +G QARLMSQA+RK++GN  K+
Sbjct: 144 LEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKS 203

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329
           GCT+IFLNQ+R KIGV YGNPE T+GG ALKF+ASVRL+IR    +K  +G E+ G+R +
Sbjct: 204 GCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK--RGTEEYGIRAK 261

Query: 330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRD 389
           V+V K+KV+ P++ AEF+I+FG G+S LGC+LD AE   +V+RKGAWYSY    +GQGRD
Sbjct: 262 VKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRD 321

Query: 390 KALQYLRDNPLLQEEIEKVVRSMMSDGS 417
             + +L  N   QE+IE +VR  +++GS
Sbjct: 322 NTITWLEQNSEAQEQIEVLVRQKLTEGS 349

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Prochlorococcus marinus (strain MIT 9303) (taxid: 59922)

>sp|Q111E0|RECA_TRIEI Protein RecA OS=Trichodesmium erythraeum (strain IMS101) GN=recA PE=3 SV=1

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/329 (60%), Positives = 256/329 (77%), Gaps = 2/329 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
           ++Q+ALD+ +  I  +FGKGS+ RLG A    VET  SG LTLDLALGGGLPKGR++EI+
Sbjct: 9   EKQKALDSVLKTIEKTFGKGSIVRLGDATRMKVETISSGALTLDLALGGGLPKGRVIEIY 68

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTLALHAIAE QK GG A  VDAEHA DP+Y+ ALGVD+ENL+V QPD GEMA
Sbjct: 69  GPESSGKTTLALHAIAETQKSGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGEMA 128

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LE+ D + RS A+D++ VDSV+AL PRAEIEG++G   +GLQARLMSQALRK++GN  K+
Sbjct: 129 LEVVDHLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNIGKS 188

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329
           GCT++FLNQ+R KIGV YGNPE T+GG ALKF+ASVRL+IR T  +K  K  E+ G+  +
Sbjct: 189 GCTVVFLNQLRQKIGVVYGNPETTTGGNALKFYASVRLDIRRTQTLK--KSSEEYGIHAK 246

Query: 330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRD 389
           V+V K+KV+ P++ AEF+IIFG+G+S +GC++D AE  D++ RKGAWYSY      QGR+
Sbjct: 247 VKVAKNKVAPPFRVAEFDIIFGKGISNVGCIIDLAEETDVIKRKGAWYSYQGSNFAQGRE 306

Query: 390 KALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           KA+ Y+  N    ++IEK VR  +S G++
Sbjct: 307 KAIAYMESNIDFAKKIEKQVRDHLSQGAL 335

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
224115208	387	predicted protein [Populus trichocarpa]	0.865	0.984	0.875	0.0
225462225	415	PREDICTED: DNA repair protein recA homol	0.863	0.915	0.837	0.0
18412241	439	DNA repair protein recA-like 1 [Arabidop	0.913	0.915	0.803	0.0
296082805	384	unnamed protein product [Vitis vinifera]	0.863	0.989	0.837	0.0
166841	438	replicase, partial [Arabidopsis thaliana	0.913	0.917	0.803	0.0
449466614	417	PREDICTED: DNA repair protein recA homol	0.902	0.952	0.807	0.0
227204159	448	AT1G79050 [Arabidopsis thaliana]	0.913	0.897	0.785	0.0
356556644	414	PREDICTED: DNA repair protein recA homol	0.922	0.980	0.764	1e-180
255578168	343	DNA repair protein reca, putative [Ricin	0.777	0.997	0.892	1e-180
357120609	412	PREDICTED: DNA repair protein recA homol	0.909	0.970	0.766	1e-179

>gi|224115208|ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|222875295|gb|EEF12426.1| predicted protein [Populus trichocarpa]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/386 (87%), Positives = 360/386 (93%), Gaps = 5/386 (1%)

Query: 39  SSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNG--FSSDSGDSRFLDRQRALD 96
           S PL+ Q SR  F T  S  +A +K+ K+I CEFD KVNG   SSD  D+RFLD+Q+AL+
Sbjct: 4   SLPLYFQFSRVCFKT--SHFAAVKKKPKEIRCEFDSKVNGSPLSSDL-DARFLDKQKALE 60

Query: 97  AAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGK 156
           AAMNDIN+SFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVEIFGPESSGK
Sbjct: 61  AAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIFGPESSGK 120

Query: 157 TTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRM 216
           TTLALHAIAEVQK GG+AMLVDAEHAFDP+YSKALGVDVENLIVCQPDNGEMALEIADRM
Sbjct: 121 TTLALHAIAEVQKFGGHAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRM 180

Query: 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 276
           CRSGA+DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL
Sbjct: 181 CRSGAVDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 240

Query: 277 NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSK 336
           NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSK
Sbjct: 241 NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSK 300

Query: 337 VSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLR 396
           VSRPYKQAEFEIIFGEGVS+LGC+LDCAEMMD+VV+KG+WYSYGD RLGQGRDKALQYLR
Sbjct: 301 VSRPYKQAEFEIIFGEGVSQLGCILDCAEMMDVVVKKGSWYSYGDHRLGQGRDKALQYLR 360

Query: 397 DNPLLQEEIEKVVRSMMSDGSVHQGS 422
           DNP LQEEIEK VRS M+DG+V+ G+
Sbjct: 361 DNPHLQEEIEKKVRSTMTDGTVNMGT 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462225|ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Vitis vinifera]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/381 (83%), Positives = 350/381 (91%), Gaps = 1/381 (0%)

Query: 61  ARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGA 120
           A+++  ++ CEF+ KVNG  S   D RFLDRQ+AL+AAMNDINSSFGKGSVTRLGSAGGA
Sbjct: 34  AKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGA 93

Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
           LVETFPSGCLTLD ALGGGLPKGRIVEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAE
Sbjct: 94  LVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 153

Query: 181 HAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240
           HAFDP+YSKALGVDVENLIVCQPD+GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE
Sbjct: 154 HAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 213

Query: 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300
           GEIGMQQ+GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK
Sbjct: 214 GEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 273

Query: 301 FFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCM 360
           FFAS+RLEIR  GKIKS KGDED+G+RVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC+
Sbjct: 274 FFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCI 333

Query: 361 LDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQ 420
           LDCAE+MD+VV+KG+WYSYGD RLGQGRD+ALQYLR+NPL+  EIEK+VR MM++G    
Sbjct: 334 LDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQL 393

Query: 421 GS-FLRNVSLPNQEENILEEF 440
           G+  +R      ++E+ILEE 
Sbjct: 394 GAPHVRLSPTSPEDEDILEEI 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412241|ref|NP_565198.1| DNA repair protein recA-like 1 [Arabidopsis thaliana] gi|2500098|sp|Q39199.1|RECAC_ARATH RecName: Full=DNA repair protein recA homolog 1, chloroplastic; AltName: Full=Recombinase A homolog 1; Flags: Precursor gi|289208|gb|AAA61781.1| chloroplast DNA repair protein precursor [Arabidopsis thaliana] gi|3152570|gb|AAC17051.1| Match to nuclear-encoded chloroplast DNA repair protein (E. coli recA homolog) gb|L15229 [Arabidopsis thaliana] gi|15292903|gb|AAK92822.1| putative replicase [Arabidopsis thaliana] gi|21281181|gb|AAM45008.1| putative replicase [Arabidopsis thaliana] gi|332198076|gb|AEE36197.1| DNA repair protein recA-like 1 [Arabidopsis thaliana]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/402 (80%), Positives = 353/402 (87%)

Query: 23  FSPFNMKTHSCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD 82
           F+P +        S  S  L   S  SR   +   + AA+K   KIS EFD ++NG  S 
Sbjct: 15  FTPLSPLFPFTPCSSFSPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDRINGALSP 74

Query: 83  SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPK 142
             DSRFLDRQ+AL+AAMNDINSSFGKGSVTRLGSAGGALVETF SG LTLDLALGGGLPK
Sbjct: 75  DADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALGGGLPK 134

Query: 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQ 202
           GR+VEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP+YSKALGVDVENLIVCQ
Sbjct: 135 GRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQ 194

Query: 203 PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262
           PDNGEMALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKM
Sbjct: 195 PDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKM 254

Query: 263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDE 322
           SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS GKIKS KGDE
Sbjct: 255 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDE 314

Query: 323 DVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQ 382
           D+G+R RVRVQKSKVSRPYKQAEFEI+FGEGVSKLGC+LDCAE+M++VV+KG+WYSY DQ
Sbjct: 315 DIGLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQ 374

Query: 383 RLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFL 424
           RLGQGR+KALQ+LR+NP LQ+EIEK VR +M DG VH+ + L
Sbjct: 375 RLGQGREKALQHLRENPALQDEIEKKVRLLMLDGEVHRSTPL 416

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082805|emb|CBI21810.3| unnamed protein product [Vitis vinifera]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/381 (83%), Positives = 350/381 (91%), Gaps = 1/381 (0%)

Query: 61  ARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGA 120
           A+++  ++ CEF+ KVNG  S   D RFLDRQ+AL+AAMNDINSSFGKGSVTRLGSAGGA
Sbjct: 3   AKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGA 62

Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
           LVETFPSGCLTLD ALGGGLPKGRIVEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAE
Sbjct: 63  LVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 122

Query: 181 HAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240
           HAFDP+YSKALGVDVENLIVCQPD+GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE
Sbjct: 123 HAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 182

Query: 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300
           GEIGMQQ+GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK
Sbjct: 183 GEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 242

Query: 301 FFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCM 360
           FFAS+RLEIR  GKIKS KGDED+G+RVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC+
Sbjct: 243 FFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCI 302

Query: 361 LDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQ 420
           LDCAE+MD+VV+KG+WYSYGD RLGQGRD+ALQYLR+NPL+  EIEK+VR MM++G    
Sbjct: 303 LDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQL 362

Query: 421 GS-FLRNVSLPNQEENILEEF 440
           G+  +R      ++E+ILEE 
Sbjct: 363 GAPHVRLSPTSPEDEDILEEI 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166841|gb|AAA32855.1| replicase, partial [Arabidopsis thaliana]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/402 (80%), Positives = 353/402 (87%)

Query: 23  FSPFNMKTHSCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD 82
           F+P +        S  S  L   S  SR   +   + AA+K   KIS EFD ++NG  S 
Sbjct: 14  FTPLSPLFPFTPCSSFSPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDRINGALSP 73

Query: 83  SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPK 142
             DSRFLDRQ+AL+AAMNDINSSFGKGSVTRLGSAGGALVETF SG LTLDLALGGGLPK
Sbjct: 74  DADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALGGGLPK 133

Query: 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQ 202
           GR+VEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP+YSKALGVDVENLIVCQ
Sbjct: 134 GRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQ 193

Query: 203 PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262
           PDNGEMALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKM
Sbjct: 194 PDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKM 253

Query: 263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDE 322
           SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS GKIKS KGDE
Sbjct: 254 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDE 313

Query: 323 DVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQ 382
           D+G+R RVRVQKSKVSRPYKQAEFEI+FGEGVSKLGC+LDCAE+M++VV+KG+WYSY DQ
Sbjct: 314 DIGLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQ 373

Query: 383 RLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFL 424
           RLGQGR+KALQ+LR+NP LQ+EIEK VR +M DG VH+ + L
Sbjct: 374 RLGQGREKALQHLRENPALQDEIEKKVRLLMLDGEVHRSTPL 415

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466614|ref|XP_004151021.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Cucumis sativus]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/400 (80%), Positives = 358/400 (89%), Gaps = 3/400 (0%)

Query: 41  PLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMN 100
           P    SS  R +  SS LS A KR +++ CEF+  +NG  S   D R +DR++AL+AAMN
Sbjct: 20  PQCAASSGPRQWLPSS-LSNAGKRVRELRCEFEVNLNGALSGDFDPRSVDRKKALEAAMN 78

Query: 101 DINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLA 160
           DIN SFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVEIFGPESSGKTTLA
Sbjct: 79  DINGSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLA 138

Query: 161 LHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG 220
           LHAIAEVQKLGGNAMLVDAEHAFDP+YSKA+GVDVENLIVCQPD+GEMALEIADRMCRSG
Sbjct: 139 LHAIAEVQKLGGNAMLVDAEHAFDPTYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSG 198

Query: 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280
           A+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNASKAGCTLIFLNQIR
Sbjct: 199 AVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 258

Query: 281 YKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP 340
           YKIGVYYGNPEVTSGGIALKFFAS+RLEIRS GK+KS KGDE++G+RVRVRVQKSKVSRP
Sbjct: 259 YKIGVYYGNPEVTSGGIALKFFASLRLEIRSIGKLKSAKGDEEIGIRVRVRVQKSKVSRP 318

Query: 341 YKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPL 400
           YKQAEFEIIFGEGVSKLGC+LDCAE+M+IVV+KG+WYSYGDQRLGQGRD+ALQY +DNP 
Sbjct: 319 YKQAEFEIIFGEGVSKLGCILDCAEIMEIVVKKGSWYSYGDQRLGQGRDRALQYFKDNPA 378

Query: 401 LQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEEF 440
           LQ+EIEK +++M++ G+V  G       LPNQE  +LEEF
Sbjct: 379 LQDEIEKTLQTMLTSGTVQMGFQSIRKPLPNQE--VLEEF 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227204159|dbj|BAH56931.1| AT1G79050 [Arabidopsis thaliana]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/411 (78%), Positives = 353/411 (85%), Gaps = 9/411 (2%)

Query: 23  FSPFNMKTHSCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD 82
           F+P +        S  S  L   S  SR   +   + AA+K   KIS EFD ++NG  S 
Sbjct: 15  FTPLSPLFPFTPCSSFSPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDRINGALSP 74

Query: 83  SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPK 142
             DSRFLDRQ+AL+AAMNDINSSFGKGSVTRLGSAGGALVETF SG LTLDLALGGGLPK
Sbjct: 75  DADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALGGGLPK 134

Query: 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQ 202
           GR+VEI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP+YSKALGVDVENLIVCQ
Sbjct: 135 GRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQ 194

Query: 203 PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262
           PDNGEMALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKM
Sbjct: 195 PDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKM 254

Query: 263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDE 322
           SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS GKIKS KGDE
Sbjct: 255 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDE 314

Query: 323 DVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQ 382
           D+G+R RVRVQKSKVSRPYKQAEFEI+FGEGVSKLGC+LDCAE+M++VV+KG+WYSY DQ
Sbjct: 315 DIGLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQ 374

Query: 383 RLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS---------DGSVHQGSFL 424
           RLGQGR+KALQ+LR+NP LQ+EIEK VR +M          DG VH+ + L
Sbjct: 375 RLGQGREKALQHLRENPALQDEIEKKVRLLMVLQKVRLLMLDGEVHRSTPL 425

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556644|ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Glycine max]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 319/417 (76%), Positives = 358/417 (85%), Gaps = 11/417 (2%)

Query: 26  FNMKTHSCLLS--ISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDS 83
           F +K H  +L   +SSS L     R R  TA         +   I CE +G+ NG  S  
Sbjct: 5   FPLKPHCVILKAPLSSSLLFPFPLRFRAVTAF--------KHANIQCELEGRPNGALSGD 56

Query: 84  GDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKG 143
            D RF+DRQ+AL+AAMNDIN++FGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKG
Sbjct: 57  FDPRFIDRQKALEAAMNDINNNFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKG 116

Query: 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQP 203
           RI+EI+GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP+YSKALGVDVENLIVCQP
Sbjct: 117 RIIEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQP 176

Query: 204 DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS 263
           D+GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS
Sbjct: 177 DHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS 236

Query: 264 GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDED 323
           GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFAS+RLE+R TGKIKS KGDE+
Sbjct: 237 GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEVRPTGKIKSAKGDEE 296

Query: 324 VGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQR 383
           +G++VR+RVQKSKVSRPYK AEFEIIFGEG+SKLGC+LDCAEM DIV +KG+WYSYGD R
Sbjct: 297 IGLKVRLRVQKSKVSRPYKIAEFEIIFGEGISKLGCILDCAEMTDIVSKKGSWYSYGDHR 356

Query: 384 LGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS-FLRNVSLPNQEENILEE 439
           LGQGRDKA+QYL++N  L EEIEKVVRS + DG+       ++N S+ +Q++++ EE
Sbjct: 357 LGQGRDKAIQYLKENTHLLEEIEKVVRSSLIDGTNQTSPVHMKNSSVLHQDDDMFEE 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578168|ref|XP_002529953.1| DNA repair protein reca, putative [Ricinus communis] gi|223530551|gb|EEF32430.1| DNA repair protein reca, putative [Ricinus communis]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/343 (89%), Positives = 328/343 (95%), Gaps = 1/343 (0%)

Query: 99  MNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTT 158
           MNDIN+SFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVEI+GPESSGKTT
Sbjct: 1   MNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTT 60

Query: 159 LALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218
           LALHAIAE+QKLGGNAMLVDAEHAFDP+YSKALGVDVENLIVCQPDNGEMALEIADRMCR
Sbjct: 61  LALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCR 120

Query: 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ 278
           SGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNASKAGCTL+FLNQ
Sbjct: 121 SGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLVFLNQ 180

Query: 279 IRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS 338
           IRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS GKIKS KGDEDVG+RVRVRVQKSKVS
Sbjct: 181 IRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSNGKIKSAKGDEDVGLRVRVRVQKSKVS 240

Query: 339 RPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDN 398
           RPYKQAEFEIIFGEGVS+LGC+LDCAEMMD+VV+KG+WYSYG+ RLGQGRD+ALQYLRDN
Sbjct: 241 RPYKQAEFEIIFGEGVSRLGCVLDCAEMMDVVVKKGSWYSYGEHRLGQGRDRALQYLRDN 300

Query: 399 PLLQEEIEKVVRSMMSDGSVHQGS-FLRNVSLPNQEENILEEF 440
           P L EEIEK VRSMM+DG+V+  S + RN  LP ++EN+LEE 
Sbjct: 301 PHLHEEIEKKVRSMMADGTVNTASLYSRNSPLPLEDENVLEEI 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357120609|ref|XP_003562018.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform 1 [Brachypodium distachyon]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 308/402 (76%), Positives = 346/402 (86%), Gaps = 2/402 (0%)

Query: 40  SPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKV-NGFSSDSGDSRFLDRQRALDAA 98
           +P      R R     +  S    R +++ CEF   V NG  S   D R +DRQ+ALDAA
Sbjct: 11  TPAVLPRPRRRVSATRASASGTTGRGRRLRCEFVASVGNGALSGEDDPRLIDRQKALDAA 70

Query: 99  MNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTT 158
           MNDIN+SFGKGSVTRLGSAGGA VETFPSGCLTLD ALGGGLPKGR+VE++GPESSGKTT
Sbjct: 71  MNDINNSFGKGSVTRLGSAGGAFVETFPSGCLTLDFALGGGLPKGRVVEVYGPESSGKTT 130

Query: 159 LALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218
           LALHAIAE+QKLGGNAMLVDAEHAFDP+YSKALGVD+ENLIVCQPDNGEMALEIADRMCR
Sbjct: 131 LALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPDNGEMALEIADRMCR 190

Query: 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ 278
           SGAIDLIC+DSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNASKAGCTL+FLNQ
Sbjct: 191 SGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQ 250

Query: 279 IRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS 338
           IRYKIGV+YGNPEVTSGGIALKFFASVRLEIR  GKIKS KGDEDVGV+VRVRVQKSKVS
Sbjct: 251 IRYKIGVFYGNPEVTSGGIALKFFASVRLEIRHIGKIKSAKGDEDVGVKVRVRVQKSKVS 310

Query: 339 RPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDN 398
           RPYKQAEFEI+FGEGVSKLGC+LDCAE+M++V +KG+WYSY D RLGQGR+KALQYLR++
Sbjct: 311 RPYKQAEFEIMFGEGVSKLGCILDCAELMEVVAKKGSWYSYKDIRLGQGREKALQYLRES 370

Query: 399 PLLQEEIEKVVRSMMSDGSVHQGSF-LRNVSLPNQEENILEE 439
           P + +EIEKVVR+M+ +G+ H         S P +EE + +E
Sbjct: 371 PTICDEIEKVVRAMIPEGTRHMTLLAFGQSSSPTEEEEVYDE 412

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2207445	439	RECA1 "homolog of bacterial Re	0.915	0.917	0.753	6.3e-156
TIGR_CMR|CHY_1166	343	CHY_1166 "recA protein" [Carbo	0.752	0.965	0.541	2.7e-91
UNIPROTKB|P0A5U4	790	recA "Protein RecA" [Mycobacte	0.515	0.287	0.587	1e-86
UNIPROTKB|P16971	348	recA "Protein RecA" [Bacillus	0.747	0.945	0.510	2.6e-86
TIGR_CMR|BA_3915	343	BA_3915 "recA protein, group I	0.725	0.930	0.524	2.6e-86
UNIPROTKB|P0A7G6	353	recA [Escherichia coli K-12 (t	0.731	0.912	0.523	8.9e-86
TIGR_CMR|SPO_2034	347	SPO_2034 "recA protein" [Ruege	0.727	0.922	0.515	1.4e-85
TIGR_CMR|SO_3430	357	SO_3430 "recA protein" [Shewan	0.731	0.901	0.516	1.8e-85
TIGR_CMR|GSU_0145	338	GSU_0145 "recA protein" [Geoba	0.713	0.928	0.534	6.2e-85
TIGR_CMR|CJE_1845	343	CJE_1845 "recA protein" [Campy	0.752	0.965	0.501	1.7e-84

TAIR|locus:2207445 RECA1 "homolog of bacterial RecA" [Arabidopsis thaliana (taxid:3702)]

 Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
 Identities = 309/410 (75%), Positives = 341/410 (83%)

Query:    38 SSSP-LHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALD 96
             S SP L   S  SR   +   + AA+K   KIS EFD ++NG  S   DSRFLDRQ+AL+
Sbjct:    29 SFSPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDRINGALSPDADSRFLDRQKALE 88

Query:    97 AAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGK 156
             AAMNDINSSFGKGSVTRLGSAGGALVETF SG LTLDLALGGGLPKGR+VEI+GPESSGK
Sbjct:    89 AAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALGGGLPKGRVVEIYGPESSGK 148

Query:   157 TTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRM 216
             TTLALHAIAEVQKLGGNAMLVDAEHAFDP+YSKALGVDVENLIVCQPDNGEMALE ADRM
Sbjct:   149 TTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALETADRM 208

Query:   217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 276
             CRSGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNASKAGCTLIFL
Sbjct:   209 CRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFL 268

Query:   277 NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXXXXXXXXXX 336
             NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS GKIKS                   
Sbjct:   269 NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRARVRVQKSK 328

Query:   337 XXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLR 396
                PYKQAEFEI+FGEGVSKLGC+LDCAE+M++VV+KG+WYSY DQRLGQGR+KALQ+LR
Sbjct:   329 VSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGREKALQHLR 388

Query:   397 DNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPN------QEENILEEF 440
             +NP LQ+EIEK VR +M DG VH+ + L + S  +      +EE+ L++F
Sbjct:   389 ENPALQDEIEKKVRLLMLDGEVHRSTPLMSSSSSSASHREEEEEDSLDDF 438

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISS

GO:0009432 "SOS response" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

TIGR_CMR|CHY_1166 CHY_1166 "recA protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 182/336 (54%), Positives = 237/336 (70%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVE 147
             D+ +AL+  ++ I   FGKGS+ RLG   G   VE  P+G L LDLALG GG+P+GR+VE
Sbjct:     3 DKLKALELTISQIEKQFGKGSIMRLGENTGKFQVEVIPTGSLALDLALGVGGVPRGRVVE 62

Query:   148 IFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE 207
             IFGPESSGKTT+ALH IAE QK+GG A  +DAEHA DP Y++ LGVD+ENL+V QPD GE
Sbjct:    63 IFGPESSGKTTVALHIIAEAQKMGGIAAFIDAEHALDPVYAQKLGVDIENLLVSQPDTGE 122

Query:   208 MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNAS 267
              ALEIA+ + RSGAID+I +DSV+AL PRAEIEGE+G   +GLQARLMSQALRK++G  S
Sbjct:   123 QALEIAESLVRSGAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAIS 182

Query:   268 KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXX 327
             K+    IF+NQ+R K+GV +GNPE T GG ALKF+AS+R+++R    IK           
Sbjct:   183 KSKTVAIFINQMREKVGVMFGNPETTPGGRALKFYASIRMDVRKIDVIKQGNDIIGSRTR 242

Query:   328 XXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQG 387
                         P+KQA+F+I++GEG+SK G +LD A  + IV + G+WYSY D+RLGQG
Sbjct:   243 VKIVKNKVAP--PFKQADFDIMYGEGISKEGSLLDVAVELKIVQKVGSWYSYNDERLGQG 300

Query:   388 RDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSF 423
             R+ A ++LR NP +  EIE+ +R  + + S    SF
Sbjct:   301 RENAKEFLRQNPEIYREIEQKIREQVLN-SPESSSF 335

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

UNIPROTKB|P0A5U4 recA "Protein RecA" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 710 (255.0 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
 Identities = 134/228 (58%), Positives = 176/228 (77%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
             DR++AL+ A+  I  S+GKGSV RLG      +   P+G + LD+ALG GGLP+GR++EI
Sbjct:     6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEI 65

Query:   149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
             +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct:    66 YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125

Query:   209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
             ALEIAD + RSGA+D++ +DSV+AL PRAE+EGE+G   +GLQARLMSQALRKM+G  + 
Sbjct:   126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185

Query:   269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIK 316
             +G T IF+NQ+R KIGV +G+PE T+GG ALKF+ASVR+++R    +K
Sbjct:   186 SGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLK 233

GO:0000150 "recombinase activity" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0000725 "recombinational repair" evidence=IMP

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0004520 "endodeoxyribonuclease activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IGI;IEP

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0009650 "UV protection" evidence=IMP

GO:0016887 "ATPase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0042148 "strand invasion" evidence=IDA

GO:0046677 "response to antibiotic" evidence=IEP

UNIPROTKB|P16971 recA "Protein RecA" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 171/335 (51%), Positives = 233/335 (69%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
             DRQ ALD A+  I   FGKGS+ +LG      + T PSG L LD ALG GG P+GRI+E+
Sbjct:     3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEV 62

Query:   149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
             +GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y++ LGV++E L++ QPD GE 
Sbjct:    63 YGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQ 122

Query:   209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
             ALEIA+ + RSGA+D++ VDSV+AL P+AEIEG++G   +GLQARLMSQALRK+SG  +K
Sbjct:   123 ALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINK 182

Query:   269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
             +    IF+NQIR K+GV +GNPE T GG ALKF++SVRLE+R   ++K            
Sbjct:   183 SKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKI 242

Query:   329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                        P++ AE +I++GEG+SK G ++D    +DIV + G+WYSY ++RLGQGR
Sbjct:   243 KVVKNKVAP--PFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300

Query:   389 DKALQYLRDNPLLQEEIEKVVRS---MMSDGSVHQ 420
             + A Q+L++N  +   I++ +R    + ++G V Q
Sbjct:   301 ENAKQFLKENKDIMLMIQEQIREHYGLDNNGVVQQ 335

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|BA_3915 BA_3915 "recA protein, group I intron-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 169/322 (52%), Positives = 228/322 (70%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
             DRQ ALD A+  I   FGKGS+ +LG      V T  SG L LD+ALG GG P+GRI+EI
Sbjct:     3 DRQAALDMALKQIEKQFGKGSIMKLGEQAERKVSTVSSGSLALDVALGVGGYPRGRIIEI 62

Query:   149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
             +GPESSGKTT++LHAIAEVQ+ GG A  +DAEHA DP Y++ LGV+++ L++ QPD GE 
Sbjct:    63 YGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQ 122

Query:   209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
              LEIA+ + RSGA+D+I +DSV+AL P+AEIEG++G   +GLQARLMSQALRK+SG  +K
Sbjct:   123 GLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINK 182

Query:   269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
             +    IF+NQIR K+GV +GNPE T GG ALKF+++VRLE+R   ++K            
Sbjct:   183 SKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKV 242

Query:   329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                        P++ AE +I++GEG+S+ G +LD A  +DIV + GAWYSY ++RLGQGR
Sbjct:   243 KVVKNKVAP--PFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query:   389 DKALQYLRDNPLLQEEIEKVVR 410
             + + Q+L++N  L+EEI   +R
Sbjct:   301 ENSKQFLKENTDLREEIAFFIR 322

GO:0003677 "DNA binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

UNIPROTKB|P0A7G6 recA [Escherichia coli K-12 (taxid:83333)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 170/325 (52%), Positives = 224/325 (68%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
             ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct:     6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65

Query:   149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
             +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct:    66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125

Query:   209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
             ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct:   126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185

Query:   269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
             +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K            
Sbjct:   186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245

Query:   329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                        P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct:   246 KVVKNKIAA--PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query:   389 DKALQYLRDNPLLQEEIEKVVRSMM 413
               A  +L+DNP   +EIEK VR ++
Sbjct:   304 ANATAWLKDNPETAKEIEKKVRELL 328

GO:0003697 "single-stranded DNA binding" evidence=IEA;IDA

GO:0048870 "cell motility" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP

GO:0009432 "SOS response" evidence=IEA;IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|SPO_2034 SPO_2034 "recA protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 167/324 (51%), Positives = 227/324 (70%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVE 147
             D+Q+ALD+A+  I   FGKGS+ RLG       +E   +G L LD+ALG GGLP GRIVE
Sbjct:     8 DKQKALDSALAQIERQFGKGSIMRLGGENAIQEIEASSTGSLGLDIALGIGGLPMGRIVE 67

Query:   148 IFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE 207
             I+GPESSGKTTL LH IAE QK GG    VDAEHA DP Y++ LGVD++ L++ QPD GE
Sbjct:    68 IYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGE 127

Query:   208 MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNAS 267
              ALEI D + RSGA++++ VDSV+ALTP++E+EG++G   +G+ ARLMSQA+RK++G+ S
Sbjct:   128 QALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSIS 187

Query:   268 KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXX 327
             ++ C +IF+NQIR KIGV +G+PE T+GG ALKF++SVRL+IR  G IK           
Sbjct:   188 RSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNATR 247

Query:   328 XXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQG 387
                         P+KQ EF+I++GEG+SK G +LD      +V + G+W+SYGD+R+GQG
Sbjct:   248 VKVVKNKVAP--PFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGDERIGQG 305

Query:   388 RDKALQYLRDNPLLQEEIEKVVRS 411
             R+ A  +LR+N  +   IE  +R+
Sbjct:   306 RENAKTFLRENQSIALAIEDKIRA 329

GO:0003677 "DNA binding" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

TIGR_CMR|SO_3430 SO_3430 "recA protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 168/325 (51%), Positives = 225/325 (69%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
             ++++AL A ++ I   FGKGS+ +LG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct:     6 NKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEI 65

Query:   149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
             +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y+K LGVD++NL+  QPD GE 
Sbjct:    66 YGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQ 125

Query:   209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
             ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct:   126 ALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185

Query:   269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
             +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR TG IK            
Sbjct:   186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRV 245

Query:   329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                        P+KQAEF+I++G+G+++ G ++D      ++ + GAWYSY   ++GQGR
Sbjct:   246 KVVKNKVAA--PFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303

Query:   389 DKALQYLRDNPLLQEEIEKVVRSMM 413
               A +YL +NP +  EI+K +R ++
Sbjct:   304 ANAGKYLTENPAIAAEIDKTLRELL 328

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

TIGR_CMR|GSU_0145 GSU_0145 "recA protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 171/320 (53%), Positives = 227/320 (70%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIV 146
             +R++A++ A++ I   FGKG++ RLG A  AL  V   P+G L+LDLALG GG+P+GRI+
Sbjct:     4 EREKAIELALSQIEKQFGKGAIMRLG-ADEALPDVAAIPTGSLSLDLALGVGGVPRGRII 62

Query:   147 EIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG 206
             EI+GPESSGKTTLALH  AE QK+GG A  VDAEHA D  Y++ LGV  ++L+V QPD G
Sbjct:    63 EIYGPESSGKTTLALHIAAEAQKMGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTG 122

Query:   207 EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA 266
             E ALEIA+ + RSGA+D++ +DSV+AL P+AEIEGE+G   +GLQARLMSQALRK++G  
Sbjct:   123 EQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGII 182

Query:   267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXX 326
             SK+ C +IF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR    +K          
Sbjct:   183 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIASLKQGQDVIGSRT 242

Query:   327 XXXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQ 386
                          P+K+ EF+I +GEG+S+ G +LD A    IV + GAW+SYG  R+GQ
Sbjct:   243 KVKVVKNKVAP--PFKEVEFDIYYGEGISREGDILDLAVEKGIVDKSGAWFSYGGDRIGQ 300

Query:   387 GRDKALQYLRDNPLLQEEIE 406
             GR+ +  +L++ P L  EIE
Sbjct:   301 GRENSRLFLKERPELVNEIE 320

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

TIGR_CMR|CJE_1845 CJE_1845 "recA protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 168/335 (50%), Positives = 234/335 (69%)

Query:    90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
             +++++LDAA+  ++ +FGKG++ RLG      +++  +G + LDLALG GG+PKGRI+EI
Sbjct:     4 NKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEI 63

Query:   149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
             +GPESSGKTTL LH IAE QK GG    +DAEHA D  Y+K LGV+ ++L V QPD GE 
Sbjct:    64 YGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQ 123

Query:   209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
             ALEI + + RSGA+DLI VDSV+ALTP+AEIEG++G Q +GLQARLMSQALRK++G   K
Sbjct:   124 ALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIVHK 183

Query:   269 AGCTLIFLNQIRYKIGVY-YGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXX 327
                T+IF+NQIR KIG   YG PE T+GG ALKF+ASVRL++R    +K           
Sbjct:   184 MNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNRVK 243

Query:   328 XXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQG 387
                         P++QAEF+++FGEG+S+ G ++D    +DIV + GAW+SY D++LGQG
Sbjct:   244 VKVVKNKVAP--PFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query:   388 RDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 422
             R+ +  +L++NP + +EI K +++ M    +  GS
Sbjct:   302 RENSKAFLKENPEIADEITKAIQNSMGIEGMISGS 336

GO:0003677 "DNA binding" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6X0E8	RECA_OCHA4	No assigned EC number	0.6018	0.7272	0.8864	yes	no
A3PF51	RECA_PROM0	No assigned EC number	0.5884	0.7409	0.8931	yes	no
Q8RA55	RECA_THETN	No assigned EC number	0.5555	0.7295	0.9385	yes	no
Q3AMM5	RECA_SYNSC	No assigned EC number	0.6041	0.7590	0.8930	yes	no
A2C503	RECA_PROM1	No assigned EC number	0.5747	0.7704	0.8992	yes	no
P65976	RECA_BRUSU	No assigned EC number	0.6018	0.7272	0.8864	yes	no
P65975	RECA_BRUME	No assigned EC number	0.6018	0.7272	0.8864	yes	no
Q0SSE7	RECA_CLOPS	No assigned EC number	0.5644	0.7340	0.9176	yes	no
C0RJG9	RECA_BRUMB	No assigned EC number	0.6018	0.7272	0.8864	yes	no
Q04761	RECA_BRUAB	No assigned EC number	0.6018	0.7272	0.8864	yes	no
P94666	RECA_CLOPE	No assigned EC number	0.5644	0.7340	0.9176	yes	no
B7KLB5	RECA_CYAP7	No assigned EC number	0.6181	0.7431	0.9185	yes	no
Q5N2W5	RECA_SYNP6	No assigned EC number	0.5762	0.7409	0.9157	yes	no
Q39199	RECAC_ARATH	No assigned EC number	0.8034	0.9136	0.9157	yes	no
B8HR52	RECA_CYAP4	No assigned EC number	0.5987	0.7431	0.9159	yes	no
B2IWJ2	RECA_NOSP7	No assigned EC number	0.6006	0.7409	0.9080	yes	no
A8G766	RECA_PROM2	No assigned EC number	0.5823	0.7409	0.8931	yes	no
B1WW59	RECA_CYAA5	No assigned EC number	0.6181	0.7431	0.9369	yes	no
Q2RQH9	RECA_RHORT	No assigned EC number	0.5744	0.7386	0.8879	yes	no
A9M5L8	RECA_BRUC2	No assigned EC number	0.6018	0.7272	0.8864	yes	no
Q9S660	RECA_BIFBR	No assigned EC number	0.5869	0.725	0.8137	yes	no
A9BCQ0	RECA_PROM4	No assigned EC number	0.5659	0.8113	0.9727	yes	no
P58552	RECA_NOSS1	No assigned EC number	0.6036	0.7409	0.9131	yes	no
Q7NFV8	RECA_GLOVI	No assigned EC number	0.6165	0.7363	0.8780	yes	no
Q7V547	RECA_PROMM	No assigned EC number	0.6067	0.7409	0.8601	yes	no
P42438	RECA_ACIAD	No assigned EC number	0.5661	0.7318	0.9226	yes	no
Q8G4G9	RECA_BIFLO	No assigned EC number	0.5818	0.7386	0.8186	yes	no
Q0ID00	RECA_SYNS3	No assigned EC number	0.5994	0.7727	0.8900	yes	no
Q3AUV9	RECA_SYNS9	No assigned EC number	0.6006	0.7409	0.8670	yes	no
Q7UZU3	RECA_PROMP	No assigned EC number	0.5649	0.7954	0.9459	yes	no
Q7U4K5	RECA_SYNPX	No assigned EC number	0.6067	0.7409	0.8693	yes	no
B2S648	RECA_BRUA1	No assigned EC number	0.6018	0.7272	0.8864	yes	no
A5GIV0	RECA_SYNPW	No assigned EC number	0.5889	0.775	0.8926	yes	no
Q111E0	RECA_TRIEI	No assigned EC number	0.6048	0.7431	0.9083	yes	no
B7JZS9	RECA_CYAP8	No assigned EC number	0.6069	0.7727	0.9742	yes	no
Q46IQ5	RECA_PROMT	No assigned EC number	0.5747	0.7704	0.8992	yes	no
B0CH00	RECA_BRUSI	No assigned EC number	0.5987	0.7272	0.8864	yes	no
Q7V9V8	RECA_PROMA	No assigned EC number	0.6036	0.7522	0.8733	yes	no
Q31RD9	RECA_SYNE7	No assigned EC number	0.5762	0.7409	0.9157	yes	no
A2BTE1	RECA_PROMS	No assigned EC number	0.5956	0.7318	0.8821	yes	no
P14582	RECA_SYNP2	No assigned EC number	0.6180	0.725	0.9166	yes	no
Q9X5D8	RECA_ZYMMO	No assigned EC number	0.5830	0.7454	0.9265	yes	no
Q318I0	RECA_PROM9	No assigned EC number	0.5956	0.7318	0.8821	yes	no
P14167	RECA_ANAVT	No assigned EC number	0.6036	0.7409	0.9106	yes	no
Q8DH70	RECA_THEEB	No assigned EC number	0.6261	0.725	0.8985	yes	no
Q2YRU7	RECA_BRUA2	No assigned EC number	0.6018	0.7272	0.8864	yes	no
A2CC22	RECA_PROM3	No assigned EC number	0.6067	0.7409	0.8601	yes	no
A2BYU0	RECA_PROM5	No assigned EC number	0.5987	0.7318	0.8702	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.202.50.1	hypothetical protein (387 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_X6520	hypothetical protein (888 aa)	•		•				•		0.525
	eugene3.74560001	Predicted protein (216 aa)	•						•		0.493
	eugene3.27440001	Peptide exporter, ABC transporter family protein (648 aa)							•		0.432

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
PRK09354	349	PRK09354, recA, recombinase A; Provisional	0.0
pfam00154	322	pfam00154, RecA, recA bacterial DNA recombination	0.0
cd00983	325	cd00983, recA, RecA is a bacterial enzyme which ha	0.0
TIGR02012	321	TIGR02012, tigrfam_recA, protein RecA	1e-178
COG0468	279	COG0468, RecA, RecA/RadA recombinase [DNA replicat	5e-93
PRK09519	790	PRK09519, recA, DNA recombination protein RecA; Re	5e-91
cd01393	226	cd01393, recA_like, RecA is a bacterial enzyme whi	2e-80
cd01123	235	cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B	3e-19
cd01120	165	cd01120, RecA-like_NTPases, RecA-like NTPases	4e-16
TIGR02237	209	TIGR02237, recomb_radB, DNA repair and recombinati	2e-14
PRK09361	225	PRK09361, radB, DNA repair and recombination prote	3e-14
PRK04301	317	PRK04301, radA, DNA repair and recombination prote	1e-13
PRK09519	790	PRK09519, recA, DNA recombination protein RecA; Re	2e-13
cd01394	218	cd01394, radB, RadB	5e-12
TIGR02236	310	TIGR02236, recomb_radA, DNA repair and recombinati	8e-10
smart00382	148	smart00382, AAA, ATPases associated with a variety	3e-09
COG0467	260	COG0467, RAD55, RecA-superfamily ATPases implicate	4e-08
PLN03187	344	PLN03187, PLN03187, meiotic recombination protein	6e-08
PLN03186	342	PLN03186, PLN03186, DNA repair protein RAD51 homol	1e-07
pfam08423	261	pfam08423, Rad51, Rad51	2e-06
TIGR02238	313	TIGR02238, recomb_DMC1, meiotic recombinase Dmc1	2e-06
TIGR02239	316	TIGR02239, recomb_RAD51, DNA repair protein RAD51	6e-06
PTZ00035	337	PTZ00035, PTZ00035, Rad51 protein; Provisional	6e-06
TIGR03880	224	TIGR03880, KaiC_arch_3, KaiC domain protein, AF_03	6e-06
pfam06745	231	pfam06745, KaiC, KaiC	2e-05
pfam13481	154	pfam13481, AAA_25, AAA domain	2e-05
TIGR03881	229	TIGR03881, KaiC_arch_4, KaiC domain protein, PAE11	4e-05
COG2874	235	COG2874, FlaH, Predicted ATPases involved in bioge	0.001
cd01121	372	cd01121, Sms, Sms (bacterial radA) DNA repair prot	0.002

>gnl|CDD|236476 PRK09354, recA, recombinase A; Provisional

 Score =  553 bits (1428), Expect = 0.0
 Identities = 198/325 (60%), Positives = 253/325 (77%), Gaps = 3/325 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL+AA+  I   FGKGS+ RLG      VE   +G L LD+ALG GGLP+GRIVEI
Sbjct: 6   EKQKALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEI 65

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTLALHAIAE QK GG A  +DAEHA DP Y+K LGVD++NL+V QPD GE 
Sbjct: 66  YGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQ 125

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+DLI VDSV+AL P+AEIEGE+G   +GLQARLMSQALRK++GN SK
Sbjct: 126 ALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISK 185

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
           +  T+IF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G IK   GDE +G R 
Sbjct: 186 SNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIK--DGDEVIGNRT 243

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           +V+V K+KV+ P+KQAEF+I++GEG+S+ G ++D    + I+ + GAWYSY  +++GQGR
Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGR 303

Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
           + A QYL++NP L +EIEK +R  +
Sbjct: 304 ENAKQYLKENPELADEIEKKIREKL 328

Length = 349

>gnl|CDD|215755 pfam00154, RecA, recA bacterial DNA recombination protein

 Score =  511 bits (1317), Expect = 0.0
 Identities = 197/322 (61%), Positives = 251/322 (77%), Gaps = 3/322 (0%)

Query: 93  RALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGP 151
           +AL+AA++ I   FGKGS+ RLG      VE   +G L LD+ALG GGLPKGRI+EI+GP
Sbjct: 1   KALEAALSQIEKQFGKGSIMRLGDKTVEDVEVISTGSLGLDIALGIGGLPKGRIIEIYGP 60

Query: 152 ESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE 211
           ESSGKTTLALHAIAE QK GG A  +DAEHA DP Y+K LGVD++NL+V QPD GE ALE
Sbjct: 61  ESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALE 120

Query: 212 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGC 271
           IAD + RSGA+DLI VDSV+AL P+AEIEGE+G   +GLQARLMSQALRK++GN SK+  
Sbjct: 121 IADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNT 180

Query: 272 TLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVR 331
           T+IF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G IK  KG+E +G R +V+
Sbjct: 181 TVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIK--KGEEVIGNRTKVK 238

Query: 332 VQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKA 391
           V K+KV+ P+KQAEF+I++GEG+SK G ++D    + IV + GAWYSY  +++GQGR+ A
Sbjct: 239 VVKNKVAPPFKQAEFDIMYGEGISKEGELIDLGVKLGIVEKSGAWYSYNGEKIGQGRENA 298

Query: 392 LQYLRDNPLLQEEIEKVVRSMM 413
            QYL++NP +  EIE+ +R  +
Sbjct: 299 KQYLKENPEIAAEIEQKIREKL 320

RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. Length = 322

>gnl|CDD|238483 cd00983, recA, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

 Score =  506 bits (1306), Expect = 0.0
 Identities = 193/322 (59%), Positives = 253/322 (78%), Gaps = 3/322 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL+ A+  I   FGKGS+ +LG      VE  P+G L+LD+ALG GG PKGRI+EI
Sbjct: 1   EKQKALELALKQIEKKFGKGSIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEI 60

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTLALHAIAE QKLGG    +DAEHA DP Y+K LGVD++NL++ QPD GE 
Sbjct: 61  YGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQ 120

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+DLI VDSV+AL P+AEIEGE+G   +GLQARLMSQALRK++G+ +K
Sbjct: 121 ALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINK 180

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
           +  T+IF+NQ+R KIGV +GNPE T+GG ALKF++SVRL+IR    IK   GDE +G R 
Sbjct: 181 SNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIK--DGDEVIGNRT 238

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           +V+V K+KV+ P+K AEF+I+FGEG+S+ G ++D A  + I+ + G+WYSYGD++LGQGR
Sbjct: 239 KVKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGR 298

Query: 389 DKALQYLRDNPLLQEEIEKVVR 410
           + A +YL++NP L +EIEK VR
Sbjct: 299 ENAKEYLKENPELADEIEKKVR 320

RecA couples ATP hydrolysis to DNA strand exchange. Length = 325

>gnl|CDD|162659 TIGR02012, tigrfam_recA, protein RecA

 Score =  501 bits (1292), Expect = e-178
 Identities = 199/322 (61%), Positives = 258/322 (80%), Gaps = 3/322 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL+AA+  I   FGKGS+ RLG      VET  +G L+LDLALG GGLP+GRI+EI
Sbjct: 1   EKQKALEAALAQIEKQFGKGSIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEI 60

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTLALHAIAE QK GG A  +DAEHA DP Y++ LGVD++NL+V QPD GE 
Sbjct: 61  YGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQ 120

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIA+ + RSGA+D+I VDSV+AL P+AEIEGE+G   +GLQARLMSQALRK++G  SK
Sbjct: 121 ALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSK 180

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
           +  T IF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G++K  +G+E VG R 
Sbjct: 181 SNTTAIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQVK--QGEEVVGNRT 238

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           +V+V K+KV+ P+K+AEF+I++GEG+SKLG ++D A  +DI+ + G+WYSYGD++LGQGR
Sbjct: 239 KVKVVKNKVAPPFKEAEFDILYGEGISKLGEIIDLAVELDIIKKAGSWYSYGDEKLGQGR 298

Query: 389 DKALQYLRDNPLLQEEIEKVVR 410
           + A  YL++NP L +EIEK VR
Sbjct: 299 ENAKAYLKENPELAQEIEKKVR 320

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage [DNA metabolism, DNA replication, recombination, and repair]. Length = 321

>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair]

 Score =  281 bits (722), Expect = 5e-93
 Identities = 145/280 (51%), Positives = 194/280 (69%), Gaps = 13/280 (4%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRL-GSAGGALVETFPSGCLTLDLALGGGLPKGRIVEI 148
           D ++AL+AA+  I  +FGKGS+  L G      +E   +G L LD ALGGGLP+GRI EI
Sbjct: 6   DEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALGGGLPRGRITEI 65

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD-VENLIVCQPDNGE 207
           +GPESSGKTTLAL  +A  QK GG A  +D EHA DP  +K LGVD ++NL+V QPD GE
Sbjct: 66  YGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGE 125

Query: 208 MALEIADRMCRSGA--IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGN 265
             LEIA+++ RSGA  IDL+ VDSV+AL    EIE       +GL+ARL+S+ALRK++  
Sbjct: 126 QQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIED----GHLGLRARLLSKALRKLTRL 181

Query: 266 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG 325
           A+K    +IF NQ+R KIGV +G+PE T+GG ALKF+ASVRL++R    +K     EDVG
Sbjct: 182 ANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLK-----EDVG 236

Query: 326 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAE 365
            + RV+V K+KV+ P+K+AEF+I +G G+ + G ++D   
Sbjct: 237 NKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGV 276

Length = 279

>gnl|CDD|77219 PRK09519, recA, DNA recombination protein RecA; Reviewed

 Score =  291 bits (747), Expect = 5e-91
 Identities = 143/248 (57%), Positives = 187/248 (75%), Gaps = 3/248 (1%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ A+  I  S+GKGSV RLG      +   P+G + LD+ALG GGLP+GR++EI
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEI 65

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 66  YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D++ +DSV+AL PRAE+EGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
           +G T IF+NQ+R KIGV +G+PE T+GG ALKF+ASVR+++R    +K   G   VG R 
Sbjct: 186 SGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKD--GTNAVGNRT 243

Query: 329 RVRVQKSK 336
           RV+V K+K
Sbjct: 244 RVKVVKNK 251

Length = 790

>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

 Score =  247 bits (633), Expect = 2e-80
 Identities = 91/239 (38%), Positives = 123/239 (51%), Gaps = 30/239 (12%)

Query: 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVD 178
             +G   LD  LGGG+P GRI EIFG   SGKT L L    E Q       L G  + +D
Sbjct: 1   ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60

Query: 179 AEHAFDPSYSKALGVD--------VENLIVCQPDNGEMALEIAD---RMCRSGAIDLICV 227
            E AF P     L V         ++N+ V +P NGE  LEI +   R+  SG +DL+ V
Sbjct: 61  TEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVV 120

Query: 228 DSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287
           DSV+AL  +  I        +  +ARL+SQALRK+   A K    ++F NQ+R K+ V +
Sbjct: 121 DSVAALFRKEFIGRG----MLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMF 176

Query: 288 GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEF 346
           G+PE  +GG AL   ++ RL++R        KG   +G R   +V KS    P  +AEF
Sbjct: 177 GDPETPAGGNALAHASTTRLDLR--------KGRGIIGERRIAKVVKSPAL-PEAEAEF 226

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. Length = 226

>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B

 Score = 86.1 bits (214), Expect = 3e-19
 Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 44/255 (17%)

Query: 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVD 178
             +G   LD  LGGG+  G I EIFG   SGKT L       VQ       L G A+ +D
Sbjct: 1   LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60

Query: 179 AEHAFDP----SYSKALGVDVE----NLIVCQPDNGEMALEIADR----MCRSGAIDLIC 226
            E  F P      ++  G+D E    N+ V +  N +  L++ +     +  S  I L+ 
Sbjct: 61  TEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVI 120

Query: 227 VDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV- 285
           VDSV+AL  RAE     G  ++  + + +++ LR +   A +    ++  NQ+  +    
Sbjct: 121 VDSVTALF-RAEF---DGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARPDGA 176

Query: 286 --YYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQ 343
             + G+P+  +GG      ++ RL +R        KG    G     ++  S    P+  
Sbjct: 177 AMFGGDPKKPAGGNIWAHASTTRLYLR--------KGR---GEERIAKIVDS----PH-L 220

Query: 344 AEFEIIF---GEGVS 355
            E E +F    EG+ 
Sbjct: 221 PEGEAVFAITEEGIR 235

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . Length = 235

>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases

 Score = 75.2 bits (185), Expect = 4e-16
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 18/175 (10%)

Query: 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS----KALGVDVENLIV 200
           ++ +FGP  SGKTTLAL     +   GG  + VD E   +        ++L   ++NLI+
Sbjct: 1   LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLII 60

Query: 201 CQPDNGEMALE----IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS 256
                 + A       A+R+   G  DLI +D ++ L  RA  E   G          + 
Sbjct: 61  VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLV-RALREIREGYP------GELD 113

Query: 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS 311
           + LR++   A K G T+IF  Q+        G+P +T G   L+  A   + +  
Sbjct: 114 EELRELLERARKGGVTVIFTLQVPSGDK---GDPRLTRGAQNLEDIADTVIVLSR 165

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165

>gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein RadB

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 191
           +D  LGGG+ +G I +I+GP  SGKT + +       + G   + +D E    P   K +
Sbjct: 1   IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE-GLSPERFKQI 59

Query: 192 GVD-----VENLIVCQP---DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEI 243
             D     + N IV +    D   +A++   +     +  L+ VDS +AL  R E+  + 
Sbjct: 60  AEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDDR 118

Query: 244 GMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF- 302
             +   L  +L    L  +   A K    ++  NQ+   +      P    GG  L+ + 
Sbjct: 119 ISRNRELARQL--TLLLSL---ARKKNLAVVITNQVYTDVNNGTLRP---LGGHLLEHWS 170

Query: 303 -ASVRLE 308
              +RLE
Sbjct: 171 KVILRLE 177

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). Length = 209

>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB; Provisional

 Score = 71.4 bits (176), Expect = 3e-14
 Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 185
           P+GC  LD  LGGG  +G I +I+GP  SGKT + L    E  K G   + +D E    P
Sbjct: 6   PTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSP 64

Query: 186 SYSKAL-GVDVE----NLIVCQP---DNGEMALEIADRMCRSGAIDLICVDSVSALTPRA 237
              K + G D E    N+I+ +P   +    A+  A+++ +   + LI +DS ++L  R 
Sbjct: 65  ERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEKLAKEN-VGLIVLDSATSLY-RL 122

Query: 238 EIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284
           E+E E       L   L  Q L  +   A K    ++  NQ+   I 
Sbjct: 123 ELEDE--EDNSKLNRELGRQ-LTHLLKLARKHDLAVVITNQVYSDID 166

Length = 225

>gnl|CDD|235273 PRK04301, radA, DNA repair and recombination protein RadA; Validated

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 34/215 (15%)

Query: 128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA-EVQK------LGGNAMLVDAE 180
           G   LD  LGGG+    I E +G   SGKT +  H +A  VQ       L G A+ +D E
Sbjct: 87  GSKELDELLGGGIETQSITEFYGEFGSGKTQIC-HQLAVNVQLPEEKGGLEGKAVYIDTE 145

Query: 181 HAFDP----SYSKALGVDVE----NLIVCQPDNGEMALEIADR---MCRSG-AIDLICVD 228
             F P      ++ALG+D +    N+ V +  N +  + +A++   + + G  I L+ VD
Sbjct: 146 GTFRPERIEQMAEALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVD 205

Query: 229 SVSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY 286
           S++A   RAE    G +  +Q  L  + +   LR     A      ++  NQ+  +   +
Sbjct: 206 SLTAHF-RAEYVGRGNLAERQQKL-NKHLHDLLRL----ADLYNAAVVVTNQVMARPDAF 259

Query: 287 YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGD 321
           +G+P    GG  L   A+ R+ +R     KS KG+
Sbjct: 260 FGDPTQPIGGHILGHTATFRIYLR-----KS-KGN 288

Length = 317

>gnl|CDD|77219 PRK09519, recA, DNA recombination protein RecA; Reviewed

 Score = 72.0 bits (176), Expect = 2e-13
 Identities = 30/81 (37%), Positives = 56/81 (69%)

Query: 338 SRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRD 397
           S P+KQAEF+I++G+G+S+ G ++D      ++ + GAW++Y  ++LGQG++ A  +L +
Sbjct: 693 SPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVE 752

Query: 398 NPLLQEEIEKVVRSMMSDGSV 418
           N  + +EIEK ++  +  G+V
Sbjct: 753 NADVADEIEKKIKEKLGIGAV 773

Length = 790

>gnl|CDD|238688 cd01394, radB, RadB

 Score = 64.8 bits (158), Expect = 5e-12
 Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 15/195 (7%)

Query: 126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 185
           P+GC  LD  LGGG+ +G + +++GP  +GKT +A+    E    G     +D E     
Sbjct: 2   PTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSE 61

Query: 186 SYSKALGVDVE----NLIVCQP---DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE 238
            + +  G   E    ++IV +P   +    A++  +        DL+ VDS +AL  R E
Sbjct: 62  RFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETETFADEKV-DLVVVDSATALY-RLE 119

Query: 239 IEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298
           +  +     I     L  Q L  +   A K    ++  NQ+   +G     P    GG  
Sbjct: 120 LGDD--DTTIKNYRELAKQ-LTFLLWLARKHDVAVVITNQVYSDVGSGSVRP---LGGHT 173

Query: 299 LKFFASVRLEIRSTG 313
           L+ ++ V L +    
Sbjct: 174 LEHWSKVILRLEKLR 188

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. Length = 218

>gnl|CDD|131290 TIGR02236, recomb_radA, DNA repair and recombination protein RadA

 Score = 59.4 bits (144), Expect = 8e-10
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 27/205 (13%)

Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------KLGGNAMLVDAE 180
           +G   LD  LGGG+    I E+FG   SGKT +       VQ       LGG A+ +D E
Sbjct: 79  TGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTE 138

Query: 181 HAFDP----SYSKALGVDVE----NLIVCQPDNGEMALEIADR---MCRSG--AIDLICV 227
           + F P      ++A G+D +    N+ V +  N    + + ++   + +     + L+ V
Sbjct: 139 NTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIV 198

Query: 228 DSVSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV 285
           DS+++   RAE    G +  +Q  L  + +   LR     A      ++  NQ+  +   
Sbjct: 199 DSLTS-HFRAEYVGRGALAERQQKL-NKHLHDLLRL----ADLYNAAVVVTNQVMARPDA 252

Query: 286 YYGNPEVTSGGIALKFFASVRLEIR 310
           ++G+P    GG  L   A+ R+ +R
Sbjct: 253 FFGDPTRPIGGHILGHAATFRVYLR 277

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein [DNA metabolism, DNA replication, recombination, and repair]. Length = 310

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 55.1 bits (132), Expect = 3e-09
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVC 201
            G ++ I GP  SGKTTLA     E+   GG  + +D E   +    + L + V      
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKA- 59

Query: 202 QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRK 261
              +GE+ L +A  + R    D++ +D +++L    +               L+ + LR 
Sbjct: 60  -SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQ-----------EALLLLLEELRL 107

Query: 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
           +    S+   T+I              N E   G   L+     R+ + 
Sbjct: 108 LLLLKSEKNLTVILTT-----------NDEKDLGPALLRRRFDRRIVLL 145

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 62/256 (24%), Positives = 96/256 (37%), Gaps = 48/256 (18%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181
           +E  P+G   LD  LGGGLP+G +V I GP  +GKT  AL  + E  + G   + V  E 
Sbjct: 2   MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61

Query: 182 AFDPS----YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDS------VS 231
              P      +++ G D+E  I    + G++A+  A      G + ++  D       + 
Sbjct: 62  --SPEELLENARSFGWDLEVYI----EKGKLAILDAFLS-EKGLVSIVVGDPLDLEELLD 114

Query: 232 ALTPRAEIEGE-------IGMQQIGLQARLMS-QALRKMSGNASKAGCTLIFLNQIRYKI 283
            +    E EG        I    + L    +  + L  +     K G T +   +   + 
Sbjct: 115 RIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKKLGVTSLLTTEAPVEE 174

Query: 284 GVYYGNPE-VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQK---SKVSR 339
               G  E +  G I L                  +K  E  G R  +R+ K   +  S 
Sbjct: 175 RGESGVEEYIVDGVIRLD-----------------LKEIEGGGDRRYLRILKMRGTPHSL 217

Query: 340 PYKQAEFEIIFGEGVS 355
                 FEI  GEG+ 
Sbjct: 218 KVI--PFEITDGEGIV 231

Length = 260

>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog; Provisional

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 37/210 (17%)

Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAML--VDA 179
           +G   LD  LGGG+    I E FG   SGKT LA H +    +L     GGN  +  +D 
Sbjct: 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQLA-HTLCVTTQLPTEMGGGNGKVAYIDT 168

Query: 180 EHAFDPS----YSKALGVD----VENLIVCQPDNGEMA----LEIADRMCRSGAIDLICV 227
           E  F P      ++  G+D    ++N+I  +    E      L +A +M       L+ V
Sbjct: 169 EGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEE-PFRLLIV 227

Query: 228 DSVSAL-----TPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
           DSV AL     T R    GE+  +Q  L     +Q L +++  A +    +   NQ+   
Sbjct: 228 DSVIALFRVDFTGR----GELAERQQKL-----AQMLSRLTKIAEEFNVAVYMTNQVIAD 278

Query: 283 IG--VYYGNPEVTSGGIALKFFASVRLEIR 310
            G  ++  +P+  +GG  L   A++RL +R
Sbjct: 279 PGGGMFISDPKKPAGGHVLAHAATIRLMLR 308

Length = 344

>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKT----TLALHAIAEVQKLG--GNAMLVDAE 180
           +G   LD  L GG+  G I EI+G   +GKT    TL +     + + G  G AM +D E
Sbjct: 107 TGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTE 166

Query: 181 HAFDP----SYSKALGVD----VENLIVCQPDNGEMALEI---ADRMCRSGAIDLICVDS 229
             F P      ++  G++    +EN+   +  N +   E+   A  M       L+ VDS
Sbjct: 167 GTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDS 226

Query: 230 VSALTPRAEIE--GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279
            +AL  R E    GE+  +Q+      + + LR +   A + G  ++  NQ+
Sbjct: 227 ATALY-RTEFSGRGELSARQM-----HLGKFLRSLQRLADEFGVAVVITNQV 272

Length = 342

>gnl|CDD|117002 pfam08423, Rad51, Rad51

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 28/206 (13%)

Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKT----TLALHAIAEVQKLGGN--AMLVDAE 180
           +G   LD  LGGG+  G I E+FG   +GKT    TL +     ++  GG   A+ +D E
Sbjct: 27  TGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTE 86

Query: 181 HAFDPSYSKAL----GVD----VENLIVCQPDNGEMALEI---ADRMCRSGAIDLICVDS 229
             F P    A+    G+D    ++N+   +  N E  +++   A  M       L+ VDS
Sbjct: 87  GTFRPERIVAIAERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFALLIVDS 146

Query: 230 VSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG--- 284
            +AL  R +    GE+  +Q  L     ++ LR +   A + G  ++  NQ+  ++    
Sbjct: 147 ATALY-RTDFSGRGELAERQQHL-----AKFLRSLQRLADEFGVAVVITNQVVAQVDGAA 200

Query: 285 VYYGNPEVTSGGIALKFFASVRLEIR 310
           ++  +P+   GG  +   ++ RL +R
Sbjct: 201 MFAADPKKPIGGHIMAHASTTRLYLR 226

Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein. Length = 261

>gnl|CDD|131292 TIGR02238, recomb_DMC1, meiotic recombinase Dmc1

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 71/298 (23%), Positives = 118/298 (39%), Gaps = 54/298 (18%)

Query: 75  KVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDL 134
           K+ G S    D       +  +AA   IN  F         S     V    +G   LD 
Sbjct: 38  KIKGLSEAKVD-------KIKEAASKIINPGFITAFEI---SQKRKKVLKITTGSQALDG 87

Query: 135 ALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGNAMLVDAEHAFDPSY 187
            LGGG+    I E+FG    GKT L+ H +    +L        G    +D E  F P  
Sbjct: 88  ILGGGIESMSITEVFGEFRCGKTQLS-HTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDR 146

Query: 188 SKAL----GVD----VENLIVCQPDNGEMALEI----ADRMCRSGAIDLICVDSVSALTP 235
            +A+    GVD    ++N++  +    E  +E+    A +        L+ VDS+ AL  
Sbjct: 147 IRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFS-EEPFRLLIVDSIMALF- 204

Query: 236 RAEI--EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG---VYYGNP 290
           R +    GE+  +Q  L     +Q L +++  + +    +   NQ++   G    +  +P
Sbjct: 205 RVDFSGRGELSERQQKL-----AQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADP 259

Query: 291 EVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEI 348
           +   GG  L   ++ R+ +R        +G+E V      ++  S    P  +A F+I
Sbjct: 260 KKPIGGHVLAHASTTRILLRKG------RGEERV-----AKLYDSP-DMPEAEASFQI 305

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. Length = 313

>gnl|CDD|233794 TIGR02239, recomb_RAD51, DNA repair protein RAD51

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 29/207 (14%)

Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKT----TLALHAIAEVQKLGGN--AMLVDAE 180
           +G   LD  LGGG+  G I EIFG   +GKT    TLA+     + + GG   A+ +D E
Sbjct: 80  TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTE 139

Query: 181 HAFDP----SYSKALGVD----VENLIVCQPDNGEMALEI---ADRMCRSGAIDLICVDS 229
             F P    + ++  G++    ++N+   +  N +  L++   A  M       L+ VDS
Sbjct: 140 GTFRPERLLAIAERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDS 199

Query: 230 VSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI---- 283
            +AL  R +    GE+  +Q+      +++ LR +   A + G  ++  NQ+  ++    
Sbjct: 200 ATALY-RTDFSGRGELSARQM-----HLARFLRSLQRLADEFGVAVVITNQVVAQVDGAG 253

Query: 284 GVYYGNPEVTSGGIALKFFASVRLEIR 310
            ++ G+P+   GG  +   ++ RL +R
Sbjct: 254 SMFAGDPKKPIGGNIMAHASTTRLSLR 280

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). Length = 316

>gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKT----TLALHAIAEVQKLGGN--AMLVD 178
             +G   LD  LGGG+  G I E+FG   +GKT    TL +     +++ GG    + +D
Sbjct: 100 ITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159

Query: 179 AEHAFDP----SYSKALGVD----VENLIVCQPDNGE----MALEIADRMCRSGAIDLIC 226
            E  F P      ++  G+D    ++N+   +  N E    +  + A +M       L+ 
Sbjct: 160 TEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEE-RFALLI 218

Query: 227 VDSVSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284
           VDS +AL  R +    GE+  +Q  L  + +  AL+K+   A +    ++  NQ+   + 
Sbjct: 219 VDSATALF-RVDYSGRGELAERQQHL-GKFLR-ALQKL---ADEFNVAVVITNQVMADVD 272

Query: 285 ---VYYGNPEVTSGGIALKFFASVRLEIR 310
              ++  +P+   GG  +   ++ RL +R
Sbjct: 273 GASMFVADPKKPIGGHIIAHASTTRLSLR 301

Length = 337

>gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSK 189
           LD  LGGG P+G ++ + G   +GKTT +L  + +  K G  AM +  E   +    Y+K
Sbjct: 5   LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAK 64

Query: 190 ALGVDVE-----NLIVCQPDNGEMALEIAD------RMCRSGAIDLICVDSVSAL 233
           + G D+E     +L + + D  +    +         + +      + +D +S L
Sbjct: 65  SKGWDLEDYIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLL 119

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. Length = 224

>gnl|CDD|219158 pfam06745, KaiC, KaiC

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 39/179 (21%)

Query: 126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAE-VQKLGGNAMLVDA-EHAF 183
           P+G   LD  L GG+P+GR+V I G   +GKT   L  +     + G   + V   E   
Sbjct: 2   PTGIPGLDEILKGGIPRGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPE 61

Query: 184 D-PSYSKALGVDVENL-------------------IVCQPDN-GEMALEIADRMCRSGAI 222
           D    +K+ G D+E L                    V    +  E+   + + +   GA 
Sbjct: 62  DLRENAKSFGWDLEKLEEEGKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK 121

Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQAR-LMSQALRKMSGNASKAGCTLIFLNQIR 280
            ++ +DS++ L    +             AR ++ +  R +       G T IF ++  
Sbjct: 122 RVV-IDSITTLYLLLKPA----------MAREILRRLKRVLKKL----GVTAIFTSEKP 165

This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria. Length = 231

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 36/153 (23%)

Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 191
           L   + G LP+G +  + G   +GK+TLAL   A V                 P   +  
Sbjct: 22  LRWLVKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV---------ATGRPFLGPFPVEPG 72

Query: 192 GVDVENLIVCQPDNGEM-ALEIADRMCRSGA-------IDLICVDSVSALTPRAEIEGEI 243
            V    L +    +GE     +  R+   G         DL+ +D +++L    E +   
Sbjct: 73  RV----LYL----DGEDSEAGLRRRLRALGEALEEIEGPDLVVIDPLASLLGGDENDNA- 123

Query: 244 GMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 276
                      +  AL ++   A + G  ++ +
Sbjct: 124 -------AVGALLAALDRL---ARRTGAAVLLV 146

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|163593 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE1156 family

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 185
            +G   LD  L GG+P+G  V + G   +GKT   LH   +  + G   + V  E + + 
Sbjct: 3   STGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRES 62

Query: 186 SYSKA--LGVDVENLIVCQPDNGEMALEIADRMCR 218
              +A   G+D E  I    + G++   I D + +
Sbjct: 63  IIRQAAQFGMDFEKAI----EEGKLV--IIDALMK 91

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. Length = 229

>gnl|CDD|225429 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLAL 161
           L +   SG   LD  LGGG+P G ++ I G   +GK+ L+ 
Sbjct: 6   LKKIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQ 46

Length = 235

>gnl|CDD|238541 cd01121, Sms, Sms (bacterial radA) DNA repair protein

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD 184
            P+G   LD  LGGGL  G ++ I G    GK+TL L   A + K GG  + V  E + +
Sbjct: 64  IPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE 123

Query: 185 PSYSKA--LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSV 230
               +A  LG+  ENL +    N E  L   + +      DL+ +DS+
Sbjct: 124 QIKLRADRLGISTENLYLLAETNLEDILASIEELK----PDLVIIDSI 167

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
PF00154	322	RecA: recA bacterial DNA recombination protein; In	100.0
cd00983	325	recA RecA is a bacterial enzyme which has roles in	100.0
PRK09354	349	recA recombinase A; Provisional	100.0
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	100.0
PRK09519	790	recA DNA recombination protein RecA; Reviewed	100.0
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	100.0
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	100.0
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	100.0
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	99.97
PTZ00035	337	Rad51 protein; Provisional	99.97
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	99.97
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	99.97
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	99.96
TIGR02236	310	recomb_radA DNA repair and recombination protein R	99.96
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	99.96
PRK04301	317	radA DNA repair and recombination protein RadA; Va	99.96
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	99.96
cd01394	218	radB RadB. The archaeal protein radB shares simila	99.95
PRK06321	472	replicative DNA helicase; Provisional	99.94
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	99.94
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	99.94
PRK05595	444	replicative DNA helicase; Provisional	99.93
TIGR02237	209	recomb_radB DNA repair and recombination protein R	99.93
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	99.93
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	99.93
PRK08760	476	replicative DNA helicase; Provisional	99.93
PRK05748	448	replicative DNA helicase; Provisional	99.93
PRK05636	505	replicative DNA helicase; Provisional	99.93
PRK08006	471	replicative DNA helicase; Provisional	99.93
TIGR00665	434	DnaB replicative DNA helicase. This model describe	99.93
PRK11823	446	DNA repair protein RadA; Provisional	99.93
PRK09165	497	replicative DNA helicase; Provisional	99.93
PRK06749	428	replicative DNA helicase; Provisional	99.93
PRK08840	464	replicative DNA helicase; Provisional	99.93
PRK08506	472	replicative DNA helicase; Provisional	99.93
PRK07004	460	replicative DNA helicase; Provisional	99.92
COG0305	435	DnaB Replicative DNA helicase [DNA replication, re	99.92
PRK06904	472	replicative DNA helicase; Validated	99.92
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	99.92
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	99.92
PHA02542	473	41 41 helicase; Provisional	99.92
KOG1434	335	consensus Meiotic recombination protein Dmc1 [Cell	99.91
PRK04328	249	hypothetical protein; Provisional	99.91
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	99.89
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	99.89
KOG1564	351	consensus DNA repair protein RHP57 [Replication, r	99.89
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	99.88
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	99.87
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.87
PRK06067	234	flagellar accessory protein FlaH; Validated	99.86
PRK07773	886	replicative DNA helicase; Validated	99.86
PRK09302	509	circadian clock protein KaiC; Reviewed	99.85
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.84
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	99.84
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	99.84
PRK09302	509	circadian clock protein KaiC; Reviewed	99.84
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	99.78
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.76
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.75
PRK05973	237	replicative DNA helicase; Provisional	99.75
KOG1433	326	consensus DNA repair protein RAD51/RHP55 [Replicat	99.66
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	99.59
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.58
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.55
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.54
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.54
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	99.49
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.48
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.48
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.46
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.42
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	99.4
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.39
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.39
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.37
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.37
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.36
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.35
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.33
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.3
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.3
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.28
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.28
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.27
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.27
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.26
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.25
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.25
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.24
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.23
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.23
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.23
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.23
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.21
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.21
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.21
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.2
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.2
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.2
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.19
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.19
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.19
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.18
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.18
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.18
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.18
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.18
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.17
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.17
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.17
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.16
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.16
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.16
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.15
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.15
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.14
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.14
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.13
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.13
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.13
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.13
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.13
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.13
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.13
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.12
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.12
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.12
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.12
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.12
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.12
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.12
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.11
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.11
COG1123	539	ATPase components of various ABC-type transport sy	99.11
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.11
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.11
COG4181	228	Predicted ABC-type transport system involved in ly	99.11
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.11
cd03246	173	ABCC_Protease_Secretion This family represents the	99.11
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.1
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.1
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.1
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.1
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.09
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.09
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.09
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.09
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.09
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.08
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.08
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.08
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.08
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.08
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.08
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.08
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.08
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.07
KOG1433	326	consensus DNA repair protein RAD51/RHP55 [Replicat	99.07
PRK10908	222	cell division protein FtsE; Provisional	99.07
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.07
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.07
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.07
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.07
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.07
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.07
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.07
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.06
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.06
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.06
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.06
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.06
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.06
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.06
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.05
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.05
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.05
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.05
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.05
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.05
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.05
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.04
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.04
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.04
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.04
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.03
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.03
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.03
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.03
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.03
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.03
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.03
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.03
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.03
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.02
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.02
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.02
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.02
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.02
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.02
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.02
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.02
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.02
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.02
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.02
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.01
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.01
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.01
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.01
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.01
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.01
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.01
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.99
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.99
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.99
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.99
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.99
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.99
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.99
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.99
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.99
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.99
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.99
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.98
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.98
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.98
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.98
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.97
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.97
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.97
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.97
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.97
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.97
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.97
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.97
COG1123	539	ATPase components of various ABC-type transport sy	98.97
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.96
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.96
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.96
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.95
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.95
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.95
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.95
PRK04296	190	thymidine kinase; Provisional	98.95
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.95
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.94
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.93
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.92
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.92
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.92
PRK10938	490	putative molybdenum transport ATP-binding protein	98.92
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.91
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.91
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.9
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.9
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.9
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.9
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.89
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.89
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.89
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.89
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.89
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.89
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.89
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.88
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.88
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.88
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.88
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.87
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.87
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.87
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.87
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.87
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.87
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.86
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.86
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.86
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.86
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.86
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.86
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.85
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.85
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.85
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.85
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.85
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.85
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.84
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.84
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.84
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.84
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.84
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.84
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.83
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.83
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.83
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.83
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.83
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.83
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.82
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.82
KOG2373	514	consensus Predicted mitochondrial DNA helicase twi	98.82
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.82
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.82
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.82
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.82
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.82
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.82
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.82
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.81
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.81
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.81
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.8
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.8
PLN03211	659	ABC transporter G-25; Provisional	98.8
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.79
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.79
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.79
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.79
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.79
COG4172	534	ABC-type uncharacterized transport system, duplica	98.79
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.79
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.79
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.79
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.79
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.78
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.78
PRK13409	590	putative ATPase RIL; Provisional	98.78
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.78
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.78
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.77
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.77
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.77
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.77
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.76
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	98.75
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.75
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.74
COG4559	259	ABC-type hemin transport system, ATPase component	98.74
PRK10938	490	putative molybdenum transport ATP-binding protein	98.74
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.73
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.73
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.73
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.72
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.72
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.72
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.71
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.7
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.69
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.68
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.68
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.67
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.67
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.67
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.66
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.65
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.65
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.65
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	98.65
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.64
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.64
PRK11147	635	ABC transporter ATPase component; Reviewed	98.63
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.63
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.63
COG4988	559	CydD ABC-type transport system involved in cytochr	98.62
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.62
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.62
PLN03140	1470	ABC transporter G family member; Provisional	98.61
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.6
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.6
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.59
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.57
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.57
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.57
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.57
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.57
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.57
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.56
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.56
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.56
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.56
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.56
PLN03140	1470	ABC transporter G family member; Provisional	98.55
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.55
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.55
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.54
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.54
PRK13409	590	putative ATPase RIL; Provisional	98.53
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.53
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.53
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.52
smart00382	148	AAA ATPases associated with a variety of cellular	98.51
PF13479	213	AAA_24: AAA domain	98.5
PRK11147	635	ABC transporter ATPase component; Reviewed	98.5
PLN03130	1622	ABC transporter C family member; Provisional	98.5
PLN03232	1495	ABC transporter C family member; Provisional	98.48
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.48
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.46
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.46
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.46
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.45
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.44
PLN03073	718	ABC transporter F family; Provisional	98.43
COG4987	573	CydC ABC-type transport system involved in cytochr	98.43
PTZ00243	1560	ABC transporter; Provisional	98.42
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.41
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.4
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.39
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.38
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.33
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.33
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.32
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.31
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.3
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.3
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.28
COG0488	530	Uup ATPase components of ABC transporters with dup	98.27
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	98.27
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.25
COG4172	534	ABC-type uncharacterized transport system, duplica	98.24
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.17
PLN03073	718	ABC transporter F family; Provisional	98.17
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.16
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.15
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.13
PF07088	484	GvpD: GvpD gas vesicle protein; InterPro: IPR00978	98.13
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.13
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.1
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.09
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	98.08
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.06
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.06
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.04
COG0488	530	Uup ATPase components of ABC transporters with dup	98.03
PTZ00243	1560	ABC transporter; Provisional	98.01
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.99
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	97.97
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.94
PLN03130	1622	ABC transporter C family member; Provisional	97.94
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	97.94
PF00004	132	AAA: ATPase family associated with various cellula	97.93
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	97.92
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.91
PRK08181	269	transposase; Validated	97.9
PRK06526	254	transposase; Provisional	97.9
PRK09183	259	transposase/IS protein; Provisional	97.89
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.88
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	97.87
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.86
KOG2859	293	consensus DNA repair protein, member of the recA/R	97.85
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	97.82
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.8
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	97.79
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.78
PLN03232	1495	ABC transporter C family member; Provisional	97.78
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.75
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.75
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.74
PRK10416	318	signal recognition particle-docking protein FtsY;	97.73
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.72
PRK08727	233	hypothetical protein; Validated	97.71
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	97.71
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.7
PRK12377	248	putative replication protein; Provisional	97.7
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.69
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.69
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.67
PRK10867	433	signal recognition particle protein; Provisional	97.67
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.66
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.65
PF13173	128	AAA_14: AAA domain	97.63
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.63
KOG0062	582	consensus ATPase component of ABC transporters wit	97.62
PRK06893	229	DNA replication initiation factor; Validated	97.61
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.58
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	97.58
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.58
PRK06835	329	DNA replication protein DnaC; Validated	97.57
PRK14974	336	cell division protein FtsY; Provisional	97.57
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	97.56
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.55
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.55
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.55
PRK08084	235	DNA replication initiation factor; Provisional	97.55
PF05729	166	NACHT: NACHT domain	97.53
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.52
PRK13695	174	putative NTPase; Provisional	97.52

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=100.00  E-value=4.8e-67  Score=517.95  Aligned_cols=320  Identities=57%  Similarity=0.954  Sum_probs=292.9

Q ss_pred             HHHHHHHHHHHhhcCCCCeeeccCCC-CCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567           93 RALDAAMNDINSSFGKGSVTRLGSAG-GALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL  170 (440)
Q Consensus        93 ~~l~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~  170 (440)
                      ++|+.++++|+++||++++|++++.. ...++.+|||++.||.+|+ ||+|+|++++|+||+|+|||||++++++++++.
T Consensus         1 ~~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~   80 (322)
T PF00154_consen    1 KALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ   80 (322)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc
Confidence            57899999999999999999998865 6678899999999999998 999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHH
Q 013567          171 GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGL  250 (440)
Q Consensus       171 ~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~  250 (440)
                      +..|+|||.|+.+++.+++.+|++++++++.+|++.++.++.++++++++.+++|||||++++.|+.++++++++.+++.
T Consensus        81 g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~  160 (322)
T PF00154_consen   81 GGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGL  160 (322)
T ss_dssp             T-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSH
T ss_pred             cceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEE
Q 013567          251 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRV  330 (440)
Q Consensus       251 ~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v  330 (440)
                      +||+|++++|+|...+.+.++++|+|||+|++++.+|+++++++||++|+||+++|++++|.+.+|  ++++++|+++++
T Consensus       161 ~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~~g~~~~t~GG~alkfyas~rl~i~k~~~ik--~~~~~iG~~~~v  238 (322)
T PF00154_consen  161 QARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGVMFGNPETTPGGRALKFYASVRLEIRKKEQIK--EGDEVIGNKIKV  238 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSSSSSSSCCTSHHHHHHHCSEEEEEEEEEEEE--ETTCECEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhhccCCCcCCCCCchhhhhhhhHHhhhcccccc--cCCcccccEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999898  677999999999


Q ss_pred             EEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHHH
Q 013567          331 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR  410 (440)
Q Consensus       331 ~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~~  410 (440)
                      +|+|||++||++.++++|+|+.||+.+.+|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||+++||
T Consensus       239 kv~KnKva~P~k~a~~~i~y~~Gid~~~~lldla~~~giI~ksG~wy~y~~e~~gqG~~~~~~~L~en~e~~~ei~~~ir  318 (322)
T PF00154_consen  239 KVVKNKVAPPFKKAEFDIYYGRGIDRESELLDLAVELGIIKKSGSWYSYNGEKIGQGRENAKKYLKENPELAEEIEQKIR  318 (322)
T ss_dssp             EEEEESSS-TTEEEEEEEETTTEE-HHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             EEEEcccCCCcceeEEEEecCCeECccchHHHHHHHcChhhccCceEEECCcEecccHHHHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhc
Q 013567          411 SMMS  414 (440)
Q Consensus       411 ~~~~  414 (440)
                      +++.
T Consensus       319 ~~~~  322 (322)
T PF00154_consen  319 EKLN  322 (322)
T ss_dssp             HHT-
T ss_pred             HhcC
Confidence            9873

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=100.00  E-value=1.8e-66  Score=515.58  Aligned_cols=322  Identities=60%  Similarity=1.008  Sum_probs=310.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567           91 RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus        91 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +.++|+.++.+|+++||++++|++++.....++++|||++.||.+|+ ||||+|++++|+||||+||||||++++.++++
T Consensus         2 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~   81 (325)
T cd00983           2 KQKALELALKQIEKKFGKGSIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK   81 (325)
T ss_pred             chHHHHHHHHHHHHHhCCcceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56799999999999999999999998777789999999999999999 99999999999999999999999999999999


Q ss_pred             cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567          170 LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG  249 (440)
Q Consensus       170 ~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~  249 (440)
                      .++.|+|||+|+++++.+++.+|++.+++++.++.+.++++++++.+++++.+++|||||+++++++.++++++++.+.+
T Consensus        82 ~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~  161 (325)
T cd00983          82 LGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVG  161 (325)
T ss_pred             cCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEE
Q 013567          250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR  329 (440)
Q Consensus       250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~  329 (440)
                      .++|.|++.+++|..+++++++|||+|||++++++.+|+++++++||++|+|+++.|+++++.+.+|  ++++++|++++
T Consensus       162 ~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~~~ss~rl~lrk~~~~k--~~~~~~G~~~~  239 (325)
T cd00983         162 LQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIK--DGDEVIGNRTK  239 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHhhhcceEEEEEeecccc--cCCcccccEEE
Confidence            8999999999999999999999999999999999999999999999999999999999999999999  68889999999


Q ss_pred             EEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHH
Q 013567          330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVV  409 (440)
Q Consensus       330 v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~  409 (440)
                      ++|+|||++||++.++|+|+|++||+++++|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||++++
T Consensus       240 ~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~~~  319 (325)
T cd00983         240 VKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADEIEKKV  319 (325)
T ss_pred             EEEEecccCCCCCceEEEEEcCcccchhhhHHHHHHhCCcEEcCCCEEEECCceeccCHHHHHHHHHhCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 013567          410 RSMMS  414 (440)
Q Consensus       410 ~~~~~  414 (440)
                      |+++.
T Consensus       320 ~~~~~  324 (325)
T cd00983         320 REKLG  324 (325)
T ss_pred             HHHhc
Confidence            98764

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK09354 recA recombinase A; Provisional

Probab=100.00  E-value=7.6e-66  Score=514.47  Aligned_cols=325  Identities=61%  Similarity=1.001  Sum_probs=313.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++.++|+.++.+|+++||++++|++++.....++++|||++.||.+|+ ||||+|++++|+||+|+||||||++++.++
T Consensus         5 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~   84 (349)
T PRK09354          5 EEKQKALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA   84 (349)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3788999999999999999999999998666678999999999999999 999999999999999999999999999999


Q ss_pred             hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567          168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ  247 (440)
Q Consensus       168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q  247 (440)
                      ++.++.|+|||+|+++++.+++.+|++++++++.++.+.++.+++++.+++++.+++|||||+++++++.++++++++.+
T Consensus        85 ~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~  164 (349)
T PRK09354         85 QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSH  164 (349)
T ss_pred             HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998899999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      .+.++|.|++++++|..+++++++|+|+|||++++++.+|++++.+.||++++||+++|++++|...+|  .+++.+|++
T Consensus       165 ~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~~g~pe~~~GG~aL~~~ss~rl~lrr~~~iK--~~~~~~G~~  242 (349)
T PRK09354        165 VGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIK--DGDEVIGNR  242 (349)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccccccCCCCcCCCchhhHhhheeeeEEecccccc--cCCceecce
Confidence            889999999999999999999999999999999999999999999999999999999999999998888  677889999


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK  407 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~  407 (440)
                      ++++++|||++||++.++|+|+|++||+++++|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||++
T Consensus       243 ~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~~~~~~d~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~  322 (349)
T PRK09354        243 TKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEIEK  322 (349)
T ss_pred             EEEEEEecccCCCCCceEEEEEcCCccchhhhHHHHHHhCCcEEcccCEEEECCceecCcHHHHHHHHHhCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 013567          408 VVRSMMSD  415 (440)
Q Consensus       408 ~~~~~~~~  415 (440)
                      ++|+++..
T Consensus       323 ~~~~~~~~  330 (349)
T PRK09354        323 KIREKLGL  330 (349)
T ss_pred             HHHHHhcC
Confidence            99999864

>TIGR02012 tigrfam_recA protein RecA

Probab=100.00  E-value=1.3e-65  Score=509.27  Aligned_cols=319  Identities=62%  Similarity=1.030  Sum_probs=306.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567           91 RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus        91 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +.++|+.++.+|+++||++++|++++.....++++|||++.||.+|+ ||||+|++++|+||||+||||||++++.++++
T Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~   81 (321)
T TIGR02012         2 KQKALEAALAQIEKQFGKGSIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK   81 (321)
T ss_pred             hHHHHHHHHHHHHHHcCcceeEECcccccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56799999999999999999999997766788999999999999999 99999999999999999999999999999999


Q ss_pred             cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567          170 LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG  249 (440)
Q Consensus       170 ~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~  249 (440)
                      .++.|+|||+|+.+++.+++.+|++++++.+.++.+.++.++.++.+++++.+++|||||+++++++.++++++|+.+.+
T Consensus        82 ~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~  161 (321)
T TIGR02012        82 AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVG  161 (321)
T ss_pred             cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999888999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEE
Q 013567          250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR  329 (440)
Q Consensus       250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~  329 (440)
                      .++|.|++++++|..+++++|+|+|+|||+++.++.+|++++++.||++|+|+++.|++++|...+|  .+++.+|++++
T Consensus       162 ~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~~~~e~~~GG~aL~~~ss~r~~lrr~~~iK--~~~~~~g~~~~  239 (321)
T TIGR02012       162 LQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQVK--QGEEVVGNRTK  239 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCcccCCCccCcCccHHHHHHhHhHhhhhhhccc--cCCceeccEEE
Confidence            8999999999999999999999999999999999999999999999999999999999999998898  67788999999


Q ss_pred             EEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHH
Q 013567          330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVV  409 (440)
Q Consensus       330 v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~  409 (440)
                      ++|+|||++||++.++|+|+|++||+++++|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||++++
T Consensus       240 ~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~~~  319 (321)
T TIGR02012       240 VKVVKNKVAPPFKEAEFDILYGEGISKLGEIIDLAVELDIIKKAGSWYSYGDEKLGQGRENAKAYLKENPELAQEIEKKV  319 (321)
T ss_pred             EEEEECCCCCCCCceEEEEEcCCccchhhHHHHHHHhCCcEEcccCEEEECCcEecccHHHHHHHHHhCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH
Q 013567          410 RS  411 (440)
Q Consensus       410 ~~  411 (440)
                      |+
T Consensus       320 ~~  321 (321)
T TIGR02012       320 RE  321 (321)
T ss_pred             hC
Confidence            74

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=100.00  E-value=1.2e-46  Score=406.87  Aligned_cols=223  Identities=60%  Similarity=1.006  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567           90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus        90 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ++.++|+.++.+|+++||++++|++++.....+.++|||++.||.+|+ ||||+|.+++|+|++|+||||||++++..++
T Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~   85 (790)
T PRK09519          6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ   85 (790)
T ss_pred             HHHHHHHHHHHHHHHHhccchhcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577899999999999999999999998877889999999999999998 8999999999999999999999999999999


Q ss_pred             hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhH
Q 013567          169 KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQI  248 (440)
Q Consensus       169 ~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~  248 (440)
                      +.++.|+||++|+++++.+++++|++++++.+.++.+.+++++.+..+++++.+++|||||+++++++.++++.+++.+.
T Consensus        86 ~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~  165 (790)
T PRK09519         86 AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHV  165 (790)
T ss_pred             HcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccH
Confidence            99999999999999999999999999999999999999999999999998899999999999999988899988887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeec
Q 013567          249 GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRST  312 (440)
Q Consensus       249 ~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~  312 (440)
                      +.++|.++++|++|..+++++|+|||+|||++..++.+|++++.+.||++|+|++++||.++|.
T Consensus       166 ~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~fg~p~~~~GG~~l~h~ss~Ri~lrk~  229 (790)
T PRK09519        166 GLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRV  229 (790)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCCcCCCCCcCCCCcccceeccEEEEeeec
Confidence            7889989999999999999999999999999999999999999999999999999999999973

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=100.00  E-value=4.6e-43  Score=341.11  Aligned_cols=269  Identities=53%  Similarity=0.875  Sum_probs=246.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCeeecc-CCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567           90 DRQRALDAAMNDINSSFGKGSVTRLG-SAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus        90 ~~~~~l~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +..++.+.++..+++.++.+.++..+ ......+..||||+..||.+||||+|.|.|++|+||+||||||+|+|++++++
T Consensus         6 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq   85 (279)
T COG0468           6 DEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQ   85 (279)
T ss_pred             hhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhh
Confidence            46778888888899999988887663 33455688999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEcCCCCCChhhhhhhccc-ccceeecCCCCHHHHHHHHHHHHhcCC--cceEEEecccccCCchhhcccchh
Q 013567          169 KLGGNAMLVDAEHAFDPSYSKALGVD-VENLIVCQPDNGEMALEIADRMCRSGA--IDLICVDSVSALTPRAEIEGEIGM  245 (440)
Q Consensus       169 ~~~~~vv~id~E~~~~~~~a~~lGv~-~~~l~i~~~~~~ee~l~~i~~l~~~~~--~~lvVIDsl~~l~~~~el~~~~g~  245 (440)
                      ++++.|+|||+|+++++.+++.++.+ .+++++.++.+.++.+.+++.+.+...  ++++||||++++++..+..    +
T Consensus        86 ~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~----d  161 (279)
T COG0468          86 KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE----D  161 (279)
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC----c
Confidence            99999999999999999999999999 999999999999999999999888777  9999999999999744433    3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccc
Q 013567          246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG  325 (440)
Q Consensus       246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G  325 (440)
                      ...+.++|.|++.++.|..++++++++||++||++++++.+|++++.+.||++++|++++|+++++.+.+|    ++ .|
T Consensus       162 ~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~----~~-~g  236 (279)
T COG0468         162 GHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLK----ED-VG  236 (279)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccCCcccCCCchHHHhhhheEEEEeeccccc----cc-cC
Confidence            56678899999999999999999999999999999999999999999999999999999999999988777    23 78


Q ss_pred             eEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHc
Q 013567          326 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMM  367 (440)
Q Consensus       326 ~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~  367 (440)
                      +++.++++|||..||++.++|+|+|+.|++...++.+.+.+.
T Consensus       237 ~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~  278 (279)
T COG0468         237 NKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQ  278 (279)
T ss_pred             CeEEEEEEeCCCCCCCceeEEEeecCcccccccchhhhhhcc
Confidence            899999999999999999999999999999999999998764

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=100.00  E-value=2.8e-32  Score=271.76  Aligned_cols=265  Identities=22%  Similarity=0.312  Sum_probs=202.5

Q ss_pred             cccccccccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEc
Q 013567           71 EFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFG  150 (440)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G  150 (440)
                      ++......-+.+.-..+.++..++++.+.+.+...|..+..+.   ..+....+++||++.||.+|+||+++|.+++|+|
T Consensus        27 ~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~---~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G  103 (313)
T TIGR02238        27 GVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEIS---QKRKKVLKITTGSQALDGILGGGIESMSITEVFG  103 (313)
T ss_pred             HHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHH---HhhccCceeCCCCHHHHHHhCCCCcCCeEEEEEC
Confidence            3333333444445556677788888877777655555443211   1234567899999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHHHHHHH-
Q 013567          151 PESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMALEIADR-  215 (440)
Q Consensus       151 ~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l~~i~~-  215 (440)
                      +||+|||+||++++...+.+      +++++|||+|+++.+.    +++++|+++    +++.+.++.+.++..+.+.. 
T Consensus       104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l  183 (313)
T TIGR02238       104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYL  183 (313)
T ss_pred             CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHH
Confidence            99999999999999887643      5799999999998775    567788875    47788888888877765544 


Q ss_pred             --HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc--cc-CCc
Q 013567          216 --MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV--YY-GNP  290 (440)
Q Consensus       216 --l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~--~~-~~~  290 (440)
                        .+.+.++++|||||+++++. .++.+. |+  ...+.+.+.+++..|..++++++++||++||++.+++.  +| +++
T Consensus       184 ~~~i~~~~~~LvVIDSisal~r-~~~~~~-g~--~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~  259 (313)
T TIGR02238       184 AAKFSEEPFRLLIVDSIMALFR-VDFSGR-GE--LSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADP  259 (313)
T ss_pred             HHHhhccCCCEEEEEcchHhhh-hhccCc-cc--hHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCC
Confidence              34566899999999999984 555431 11  11223457888999999999999999999999988764  33 678


Q ss_pred             eeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          291 EVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       291 ~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      ..|+||..|+|++++|++++|..      +     ..+.++|+|++..|+ ..+.|.|. ..||.
T Consensus       260 ~~p~gG~~~~h~~~~Rl~l~k~~------~-----~~R~~~~~~sp~~p~-~~~~f~i~-~~Gi~  311 (313)
T TIGR02238       260 KKPIGGHVLAHASTTRILLRKGR------G-----EERVAKLYDSPDMPE-AEASFQIT-EGGIA  311 (313)
T ss_pred             ccCcchhhhhhheeEEEEEEecC------C-----CeEEEEEeeCCCCCC-eEEEEEEe-CCccc
Confidence            88999999999999999999742      2     246899999987766 57889998 78874

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=100.00  E-value=9.1e-32  Score=270.16  Aligned_cols=267  Identities=25%  Similarity=0.331  Sum_probs=204.5

Q ss_pred             ccccccccccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEE
Q 013567           70 CEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF  149 (440)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~  149 (440)
                      .++.......+.+..+...++..++++.+.+.+...|..+..+..   ......+++||+++||.+|+|||+.|.+++|+
T Consensus        56 ~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~---~~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~  132 (344)
T PLN03187         56 NGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQGFITGSDALL---KRKSVVRITTGSQALDELLGGGIETRCITEAF  132 (344)
T ss_pred             HHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcccCCcHHHHHh---hhccCceecCCcHhHHhhcCCCCCCCeEEEEe
Confidence            344444444455556666777888888888777665544432211   12356789999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHHHHHHH
Q 013567          150 GPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMALEIADR  215 (440)
Q Consensus       150 G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l~~i~~  215 (440)
                      |+||+|||+||++++...+.+      +++++|||+|+++.+.    +++++|+++    +++.+.++.+.++....+..
T Consensus       133 G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~  212 (344)
T PLN03187        133 GEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLG  212 (344)
T ss_pred             cCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHH
Confidence            999999999999999887642      3689999999998885    566778875    57788888888876655443


Q ss_pred             ---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc--cccCCc
Q 013567          216 ---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG--VYYGNP  290 (440)
Q Consensus       216 ---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig--~~~~~~  290 (440)
                         .+.+.++++|||||+++++ +.++.+. ++  ...+.+.+.++++.|+++++++|++||++||++.+++  .+++++
T Consensus       213 l~~~i~~~~~~LvVIDSital~-r~~~~~r-g~--l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~  288 (344)
T PLN03187        213 LAAKMAEEPFRLLIVDSVIALF-RVDFTGR-GE--LAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDP  288 (344)
T ss_pred             HHHHHHhcCCCEEEEeCcHHhh-hccccCc-cc--hHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCC
Confidence               4556789999999999998 4555432 11  1123345788899999999999999999999998775  356788


Q ss_pred             eeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567          291 EVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK  356 (440)
Q Consensus       291 ~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~  356 (440)
                      ..++||..|.|+++.|+++++..           |..+.++|+|++..|+ ..+.|.|. ..||..
T Consensus       289 ~~pagG~~~~h~~~~Rl~l~k~~-----------~~~R~~~v~ksp~lp~-~~~~f~It-~~GI~d  341 (344)
T PLN03187        289 KKPAGGHVLAHAATIRLMLRKGK-----------GEQRVCKVFDAPNLPE-AEAEFQIT-SGGIMD  341 (344)
T ss_pred             CCCCCchhhheeeeEEEEEEcCC-----------CCeEEEEEEECCCCCC-ceEEEEEe-CCCccC
Confidence            89999999999999999998742           2346899999987654 56889998 788853

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=99.97  E-value=3.9e-30  Score=258.62  Aligned_cols=219  Identities=27%  Similarity=0.412  Sum_probs=175.8

Q ss_pred             CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567          120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK  189 (440)
Q Consensus       120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~  189 (440)
                      ....+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+      +++|+|||+|+++.+.    +++
T Consensus       100 ~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~  179 (342)
T PLN03186        100 QEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE  179 (342)
T ss_pred             cCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999887632      3589999999998875    466


Q ss_pred             hhcccc----cceeecCCCCHHHHHHHHH---HHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567          190 ALGVDV----ENLIVCQPDNGEMALEIAD---RMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM  262 (440)
Q Consensus       190 ~lGv~~----~~l~i~~~~~~ee~l~~i~---~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L  262 (440)
                      ++++++    +++.+..+.+.++....+.   .++...++++|||||+++++ +.++.+. ++.  ..+.+.+.+.++.|
T Consensus       180 ~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf-r~~~~~~-g~l--~~r~~~L~~~l~~L  255 (342)
T PLN03186        180 RFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALY-RTEFSGR-GEL--SARQMHLGKFLRSL  255 (342)
T ss_pred             HcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH-HHHhcCC-ccH--HHHHHHHHHHHHHH
Confidence            778876    5777887877777655543   33556789999999999998 3555432 111  12233478889999


Q ss_pred             HHHHHhcCCEEEEEecccccccc--ccCCce-eecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGV--YYGNPE-VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR  339 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~--~~~~~~-~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~  339 (440)
                      +.+++++|++||++||++.+++.  +++++. .|+||.+|.|+++.|+++++..           |..+.+++.||+..|
T Consensus       256 ~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~-----------~~~R~~~v~ksp~~p  324 (342)
T PLN03186        256 QRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGR-----------GENRICKVISSPCLP  324 (342)
T ss_pred             HHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecC-----------CCeEEEEEEECCCCC
Confidence            99999999999999999887764  566666 8999999999999999999742           234689999999887


Q ss_pred             CCceEEEEEEeCCCcc
Q 013567          340 PYKQAEFEIIFGEGVS  355 (440)
Q Consensus       340 p~~~~~~~i~~~~Gi~  355 (440)
                      +. .+.|.|. ..||.
T Consensus       325 ~~-e~~F~I~-~~Gi~  338 (342)
T PLN03186        325 EA-EARFSIS-SEGVT  338 (342)
T ss_pred             Ce-EEEEEEE-CCcee
Confidence            75 5899998 78885

>PTZ00035 Rad51 protein; Provisional

Probab=99.97  E-value=5.6e-30  Score=257.82  Aligned_cols=259  Identities=22%  Similarity=0.321  Sum_probs=194.1

Q ss_pred             cccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcH
Q 013567           77 NGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGK  156 (440)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGK  156 (440)
                      ..-+.+..+...++..++++.+.......|-.+..+.  + ......+++||++.||.+|+|||++|++++|+|+||+||
T Consensus        55 ~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~--~-~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGK  131 (337)
T PTZ00035         55 KKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYL--E-ARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGK  131 (337)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHHH--H-hhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCch
Confidence            3334444555666666777666655443332222111  1 123567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh------cCCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHHHHHHH---HHhc
Q 013567          157 TTLALHAIAEVQK------LGGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMALEIADR---MCRS  219 (440)
Q Consensus       157 TTLaL~li~~~~~------~~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l~~i~~---l~~~  219 (440)
                      ||||++++...+.      .+++++|||+|+++.+.    +++++++++    +|+.+.++.+.++..+.+..   .+.+
T Consensus       132 T~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~  211 (337)
T PTZ00035        132 TQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAE  211 (337)
T ss_pred             hHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhc
Confidence            9999999887763      36788999999988774    466677775    67788888888776665443   3446


Q ss_pred             CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc---ccCCceeeccc
Q 013567          220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV---YYGNPEVTSGG  296 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~---~~~~~~~~~gG  296 (440)
                      ..+++|||||+++++ +.++.++ ++  ...+.+.+.++++.|+.+++++|++||++||++.+++.   +.+++..++||
T Consensus       212 ~~~~lvVIDSital~-r~~~~~~-~~--~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG  287 (337)
T PTZ00035        212 ERFALLIVDSATALF-RVDYSGR-GE--LAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGG  287 (337)
T ss_pred             cCccEEEEECcHHhh-hhhccCc-cc--HHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccCCCCccCCch
Confidence            789999999999987 3555432 11  12334567889999999999999999999999987752   24677889999


Q ss_pred             ceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          297 IALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       297 ~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      .+|.|++++|+++++..           |..|.++|+|++..|+. .+.|.|. .+||.
T Consensus       288 ~~~~h~~~~Rl~l~k~~-----------~~~R~~~i~ksp~~p~~-~~~f~It-~~Gi~  333 (337)
T PTZ00035        288 HIIAHASTTRLSLRKGR-----------GEQRICKIYDSPNLPES-EAVFAIS-EGGII  333 (337)
T ss_pred             HHHHhheeEEEEEEecC-----------CCeeEEEEEECCCCCCe-eEEEEEe-CCccc
Confidence            99999999999999742           22467899999877664 5789998 78885

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=99.97  E-value=7.8e-30  Score=247.90  Aligned_cols=217  Identities=30%  Similarity=0.479  Sum_probs=169.6

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChhh----hhhh
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPSY----SKAL  191 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~~----a~~l  191 (440)
                      ...|+||++.||.+|+|||+.|.+++|+|+||+|||+||++++..++.+      +++++|||+|..+...+    ++++
T Consensus        17 ~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~   96 (256)
T PF08423_consen   17 WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF   96 (256)
T ss_dssp             S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT
T ss_pred             CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc
Confidence            3579999999999999999999999999999999999999999988743      57899999999998863    4445


Q ss_pred             ccc----ccceeecCCCCHHHHHHHHHH---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567          192 GVD----VENLIVCQPDNGEMALEIADR---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG  264 (440)
Q Consensus       192 Gv~----~~~l~i~~~~~~ee~l~~i~~---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~  264 (440)
                      +.+    ++++.+....+.+++.+.+..   .+.+.++++|||||+++++ +.++.+. +  ....+.+.+.++++.|+.
T Consensus        97 ~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~-~--~~~~R~~~L~~~~~~L~~  172 (256)
T PF08423_consen   97 GLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGR-G--DLAERQRMLARLARILKR  172 (256)
T ss_dssp             TS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGST-T--THHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccc-h--hhHHHHHHHHHHHHHHHH
Confidence            554    367888888888777665544   3456789999999999998 4666532 1  122446678899999999


Q ss_pred             HHHhcCCEEEEEeccccccccc---cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567          265 NASKAGCTLIFLNQIRYKIGVY---YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY  341 (440)
Q Consensus       265 lak~~~~tVI~inhl~~~ig~~---~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~  341 (440)
                      +|++++++||++||+..+++..   .++...|++|..|.|.++.|+.++|..           |..+.++|.|++..|+ 
T Consensus       173 lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~-----------~~~R~~~i~ksp~~p~-  240 (256)
T PF08423_consen  173 LARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGR-----------GSERVATIVKSPSLPE-  240 (256)
T ss_dssp             HHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECS-----------TTEEEEEEEECSSSSS-
T ss_pred             HHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCC-----------CCeEEEEEeECCCCCC-
Confidence            9999999999999999877642   345678999999999999999999742           2357899999987655 


Q ss_pred             ceEEEEEEeCCCcc
Q 013567          342 KQAEFEIIFGEGVS  355 (440)
Q Consensus       342 ~~~~~~i~~~~Gi~  355 (440)
                      ..+.|.|. ++||.
T Consensus       241 ~~~~f~It-~~Gi~  253 (256)
T PF08423_consen  241 GSASFQIT-EDGIR  253 (256)
T ss_dssp             EEEEEEEE-TTEEE
T ss_pred             ceEEEEEe-CCCcc
Confidence            57889998 88885

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=99.97  E-value=5.3e-29  Score=236.90  Aligned_cols=205  Identities=42%  Similarity=0.638  Sum_probs=167.3

Q ss_pred             cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CcEEEEcCCCCCChhhh----hhhccc
Q 013567          125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG------GNAMLVDAEHAFDPSYS----KALGVD  194 (440)
Q Consensus       125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~------~~vv~id~E~~~~~~~a----~~lGv~  194 (440)
                      ++||++.||.+|+||+++|++++|+|+||+|||+||++++...+.++      .+++||++|+.+++.+.    +..+.+
T Consensus         1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~   80 (226)
T cd01393           1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD   80 (226)
T ss_pred             CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence            58999999999999999999999999999999999999999988777      89999999998777533    333333


Q ss_pred             ----ccceeecCCCCHHHHHHHHHHHHh---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013567          195 ----VENLIVCQPDNGEMALEIADRMCR---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNAS  267 (440)
Q Consensus       195 ----~~~l~i~~~~~~ee~l~~i~~l~~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak  267 (440)
                          .+++.+.++.+.+++...++.+..   ..++++|||||++.++. .+..+.   .....+.+.+.++++.|+.+++
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~-~~~~~~---~~~~~~~~~l~~~~~~L~~~a~  156 (226)
T cd01393          81 PEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR-KEFIGR---GMLAERARLLSQALRKLLRLAD  156 (226)
T ss_pred             hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh-hhhcCC---chHHHHHHHHHHHHHHHHHHHH
Confidence                567888888888888888777655   67899999999999984 332221   1123455678889999999999


Q ss_pred             hcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567          268 KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY  341 (440)
Q Consensus       268 ~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~  341 (440)
                      +++++||++||.+..++.+++.+..+.+|..|.|.++.|+.+++.+.      .  .|.++.+.++|++..|+.
T Consensus       157 ~~~~~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~~~~ri~l~~~~~------~--~~~~r~~~~~k~~~~~~~  222 (226)
T cd01393         157 KFNVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRG------I--IGERRIAKVVKSPALPEA  222 (226)
T ss_pred             HhCcEEEEEEEEeeecccccCCCccccCchhhhCcccEEEEEEecCC------c--cCcEEEEEEEeCCCCCCc
Confidence            99999999999998887666677788999999999999999998531      1  245668999999966664

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=99.96  E-value=7.3e-29  Score=247.78  Aligned_cols=220  Identities=26%  Similarity=0.447  Sum_probs=172.6

Q ss_pred             CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567          120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK  189 (440)
Q Consensus       120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~  189 (440)
                      ....+++||++.||.+|+||+++|++++|+|+||+||||||++++.+++.+      ++.|+|||+|+.+.+.    +++
T Consensus        73 ~~~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~  152 (316)
T TIGR02239        73 QEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAE  152 (316)
T ss_pred             cccceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999876532      2478999999987774    456


Q ss_pred             hhcccc----cceeecCCCCHHHHHHHHHH---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567          190 ALGVDV----ENLIVCQPDNGEMALEIADR---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM  262 (440)
Q Consensus       190 ~lGv~~----~~l~i~~~~~~ee~l~~i~~---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L  262 (440)
                      ++++++    +++.+....+.++....+..   ++...++++|||||+++++ +.++.+. ++  ...+.+.+.++++.|
T Consensus       153 ~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~-r~~~~~~-~~--~~~rq~~l~~~~~~L  228 (316)
T TIGR02239       153 RYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY-RTDFSGR-GE--LSARQMHLARFLRSL  228 (316)
T ss_pred             HcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh-hhhcCCc-ch--HHHHHHHHHHHHHHH
Confidence            677775    45667666676665554443   3556789999999999997 3554432 11  112234467889999


Q ss_pred             HHHHHhcCCEEEEEecccccccc---cc-CCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGV---YY-GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS  338 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~---~~-~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~  338 (440)
                      +.++++++++||++||++.+++.   .+ +++..|+||..|.|+++.|+++++..      +     ..|.++++||+..
T Consensus       229 ~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~------~-----~~R~~~v~ksp~~  297 (316)
T TIGR02239       229 QRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGR------G-----EQRICKIYDSPCL  297 (316)
T ss_pred             HHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecC------C-----CeEEEEEEECCCC
Confidence            99999999999999999987653   23 57889999999999999999999742      1     3468999999988


Q ss_pred             CCCceEEEEEEeCCCccc
Q 013567          339 RPYKQAEFEIIFGEGVSK  356 (440)
Q Consensus       339 ~p~~~~~~~i~~~~Gi~~  356 (440)
                      |+. .+.|.|. +.||..
T Consensus       298 p~~-~~~f~i~-~~Gi~~  313 (316)
T TIGR02239       298 PES-EAMFAIY-EDGIGD  313 (316)
T ss_pred             CCe-EEEEEEe-CCceec
Confidence            875 5889997 788853

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=99.96  E-value=3.1e-28  Score=243.15  Aligned_cols=218  Identities=28%  Similarity=0.436  Sum_probs=172.2

Q ss_pred             CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567          120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK  189 (440)
Q Consensus       120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~  189 (440)
                      ..+..++||++.||.+|+||++.|.+++|+|+||+||||||++++.+++.+      ++.++|||+|+++.+.    +++
T Consensus        72 ~s~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~  151 (310)
T TIGR02236        72 KTIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE  151 (310)
T ss_pred             ccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999988742      4589999999988775    345


Q ss_pred             hhcccc----cceeecCCCCHHHH---HHHHHHHHhcC--CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHH
Q 013567          190 ALGVDV----ENLIVCQPDNGEMA---LEIADRMCRSG--AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALR  260 (440)
Q Consensus       190 ~lGv~~----~~l~i~~~~~~ee~---l~~i~~l~~~~--~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~  260 (440)
                      .+|++.    +++.+..+.+.++.   ++.+..++.+.  .+++|||||+++++ +.++.+. ++  ...+.+.+.+.+.
T Consensus       152 ~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~-r~e~~~~-~~--~~~r~~~l~~~~~  227 (310)
T TIGR02236       152 ARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHF-RAEYVGR-GA--LAERQQKLNKHLH  227 (310)
T ss_pred             HcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhh-hHhhcCc-hh--HHHHHHHHHHHHH
Confidence            567764    56777776655442   33344455544  48899999999987 3555442 11  1223455778889


Q ss_pred             HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP  340 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p  340 (440)
                      .|+.+++++++|||++||++++++..++++..++||.+|.|++++|+.+++..           |..+.+++.||+..|+
T Consensus       228 ~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~~~G~~~~h~~~~rl~l~~~~-----------~~~R~~~~~k~~~~~~  296 (310)
T TIGR02236       228 DLLRLADLYNAAVVVTNQVMARPDAFFGDPTRPIGGHILGHAATFRVYLRKGK-----------GDKRIARLVDSPHLPE  296 (310)
T ss_pred             HHHHHHHHhCcEEEEeceeeecCccccCccccCCcchhhhhheeEEEEEEecC-----------CCeEEEEEEECCCCCC
Confidence            99999999999999999999988777888889999999999999999999741           2246899999998887


Q ss_pred             CceEEEEEEeCCCc
Q 013567          341 YKQAEFEIIFGEGV  354 (440)
Q Consensus       341 ~~~~~~~i~~~~Gi  354 (440)
                      .. +.|.|. +.||
T Consensus       297 ~~-~~f~i~-~~Gi  308 (310)
T TIGR02236       297 GE-AVFRIT-EKGI  308 (310)
T ss_pred             ee-EEEEEe-CCCc
Confidence            64 469887 7776

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=99.96  E-value=5.4e-28  Score=230.31  Aligned_cols=213  Identities=27%  Similarity=0.445  Sum_probs=165.2

Q ss_pred             cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc-----cccc
Q 013567          123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV-----DVEN  197 (440)
Q Consensus       123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv-----~~~~  197 (440)
                      +++|||+++||.+|+||+++|++++|+|+||+|||+||++++.+.++.+.+|+||++| .+...+..++.-     ..++
T Consensus         3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~~   81 (225)
T PRK09361          3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLSN   81 (225)
T ss_pred             ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhhC
Confidence            3699999999999999999999999999999999999999999999999999999999 555443332211     2356


Q ss_pred             eeecCCCCHHHHHHHHHH---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEE
Q 013567          198 LIVCQPDNGEMALEIADR---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLI  274 (440)
Q Consensus       198 l~i~~~~~~ee~l~~i~~---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI  274 (440)
                      +.+.++.+.++..+.++.   ++. .+++++||||+++++. .++.++..   ...+.+.+.+.++.|+.+++++|++||
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~~~---~~~~~~~l~~~l~~L~~~a~~~~v~vi  156 (225)
T PRK09361         82 IIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDEED---NSKLNRELGRQLTHLLKLARKHDLAVV  156 (225)
T ss_pred             eEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCCcc---HHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence            778888777665444433   333 6799999999999874 33322111   113355678888889999999999999


Q ss_pred             EEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567          275 FLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV  354 (440)
Q Consensus       275 ~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi  354 (440)
                      ++||.....+.   ....+.||..|+|+++.++.+++.      .     ++.+++.+.|++..|+...+.|+|. +.||
T Consensus       157 ~tnq~~~~~~~---~~~~~~gg~~~~~~~d~ii~l~~~------~-----~~~r~~~i~k~~~~~~~~~~~f~It-~~Gi  221 (225)
T PRK09361        157 ITNQVYSDIDS---DGLRPLGGHTLEHWSKTILRLEKF------R-----NGKRRATLEKHRSRPEGESAEFRIT-DRGI  221 (225)
T ss_pred             EEccceecCCC---CcccCCCcchhhhhccEEEEEEEc------c-----CCeEEEEEEECCCCCCCCeEEEEEe-CCcE
Confidence            99999876553   245567899999999999999872      1     2335678999998888889999998 8898


Q ss_pred             cc
Q 013567          355 SK  356 (440)
Q Consensus       355 ~~  356 (440)
                      ..
T Consensus       222 ~~  223 (225)
T PRK09361        222 EI  223 (225)
T ss_pred             ec
Confidence            53

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=99.96  E-value=7.7e-28  Score=241.11  Aligned_cols=219  Identities=29%  Similarity=0.437  Sum_probs=173.5

Q ss_pred             CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567          120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK  189 (440)
Q Consensus       120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~  189 (440)
                      ..+..++||++.||.+|+||||+|.+++|+|+||+|||+||++++.+++.+      +.+++||++|+++.+.    +++
T Consensus        79 ks~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~  158 (317)
T PRK04301         79 KNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE  158 (317)
T ss_pred             ccCCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence            346689999999999999999999999999999999999999999988754      3589999999988764    455


Q ss_pred             hhcccc----cceeecCCCCHHHH---HHHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHH
Q 013567          190 ALGVDV----ENLIVCQPDNGEMA---LEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRK  261 (440)
Q Consensus       190 ~lGv~~----~~l~i~~~~~~ee~---l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~  261 (440)
                      ++|+++    +++++.++.+.++.   +..+..++.+ .++++|||||+++++ +.++.++ ++  ...+.+.+.+.+..
T Consensus       159 ~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~-~~~~~~~-~~--~~~r~~~l~~~~~~  234 (317)
T PRK04301        159 ALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHF-RAEYVGR-GN--LAERQQKLNKHLHD  234 (317)
T ss_pred             HcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHh-hhhccCC-cc--HHHHHHHHHHHHHH
Confidence            678776    45667766655443   3445555555 689999999999987 3444432 11  11223446778888


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY  341 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~  341 (440)
                      |..+++++++|||++||+.++.+.+++++..++||..|.|+++.|+++++..      +     ..+.++++|++..|+.
T Consensus       235 L~~la~~~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~~~~rl~l~k~~------~-----~~R~~~v~k~~~~~~~  303 (317)
T PRK04301        235 LLRLADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRKSK------G-----NKRIARLVDSPHLPEG  303 (317)
T ss_pred             HHHHHHHhCCEEEEeceEEeccccccCccccCCcchHhHhheeEEEEEEecC------C-----CceEEEEEeCCCCCCc
Confidence            9999999999999999999888777888889999999999999999999741      1     2468999999988765


Q ss_pred             ceEEEEEEeCCCcc
Q 013567          342 KQAEFEIIFGEGVS  355 (440)
Q Consensus       342 ~~~~~~i~~~~Gi~  355 (440)
                       .+.|.|. ..||.
T Consensus       304 -~~~f~I~-~~Gi~  315 (317)
T PRK04301        304 -EAVFRIT-EEGIR  315 (317)
T ss_pred             -eEEEEEe-CCccc
Confidence             5689997 77873

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=99.96  E-value=1.8e-27  Score=227.72  Aligned_cols=213  Identities=29%  Similarity=0.444  Sum_probs=165.2

Q ss_pred             cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CcEEEEcCCCCCChh----hhhhhccc
Q 013567          125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG------GNAMLVDAEHAFDPS----YSKALGVD  194 (440)
Q Consensus       125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~------~~vv~id~E~~~~~~----~a~~lGv~  194 (440)
                      +|||+++||.+|+||+++|++++|+|+||+|||+||++++...+.++      .+++||++|+.+...    .++.++++
T Consensus         1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~   80 (235)
T cd01123           1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD   80 (235)
T ss_pred             CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence            58999999999999999999999999999999999999998876553      899999999977654    34445554


Q ss_pred             c----cceeecCCCCHHHHHHH---HHHHHhcC-CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567          195 V----ENLIVCQPDNGEMALEI---ADRMCRSG-AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA  266 (440)
Q Consensus       195 ~----~~l~i~~~~~~ee~l~~---i~~l~~~~-~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la  266 (440)
                      +    +++.+.++.+.+++...   +...+.+. ++++|||||++.++. .++.+.   .....+.+.+.++++.|+.++
T Consensus        81 ~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~-~~~~~~---~~~~~r~~~l~~~~~~L~~la  156 (235)
T cd01123          81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR-AEFDGR---GELAERQQHLAKLLRTLKRLA  156 (235)
T ss_pred             hHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH-HHhcCC---ccHHHHHHHHHHHHHHHHHHH
Confidence            3    56777777776665543   44445556 899999999999863 333221   111234566889999999999


Q ss_pred             HhcCCEEEEEeccccccccc---cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCce
Q 013567          267 SKAGCTLIFLNQIRYKIGVY---YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQ  343 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~---~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~  343 (440)
                      ++++++||++||.....+..   .+....+++|..|.+.++.|+++.+..           +..+.++|+|++..| ...
T Consensus       157 ~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~-----------~~~r~~~i~k~~~~~-~~~  224 (235)
T cd01123         157 DEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR-----------GEERIAKIVDSPHLP-EGE  224 (235)
T ss_pred             HHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECC-----------CCceEEEEeeCCCCC-Cce
Confidence            99999999999998765432   344567889999999999999998742           123689999998776 457


Q ss_pred             EEEEEEeCCCc
Q 013567          344 AEFEIIFGEGV  354 (440)
Q Consensus       344 ~~~~i~~~~Gi  354 (440)
                      ..|+|. +.||
T Consensus       225 ~~f~It-~~Gi  234 (235)
T cd01123         225 AVFAIT-EEGI  234 (235)
T ss_pred             EEEEEe-CCcc
Confidence            889998 7786

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd01394 radB RadB

Probab=99.95  E-value=5.4e-27  Score=222.28  Aligned_cols=210  Identities=23%  Similarity=0.376  Sum_probs=159.9

Q ss_pred             cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc----cccceee
Q 013567          125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV----DVENLIV  200 (440)
Q Consensus       125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv----~~~~l~i  200 (440)
                      +|||+++||.+|+|||++|++++|+|+||+||||||++++...++.+.+++||++|..+...+.+..+.    ...++.+
T Consensus         1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~   80 (218)
T cd01394           1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIV   80 (218)
T ss_pred             CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEE
Confidence            689999999999999999999999999999999999999999998899999999998776433222221    2356777


Q ss_pred             cCCCCHHHHHHH---HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013567          201 CQPDNGEMALEI---ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLN  277 (440)
Q Consensus       201 ~~~~~~ee~l~~---i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~in  277 (440)
                      .++.+.++....   +..++. .++++|||||+++++. .+..+...   ...+.+.+.+.++.|+.++++++++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~-~~~~~~~~---~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~  155 (218)
T cd01394          81 FEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYR-LELGDDDT---TIKNYRELAKQLTFLLWLARKHDVAVVITN  155 (218)
T ss_pred             EeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhh-HHhcCccc---hHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence            777766555443   333333 3489999999999863 33332111   123455678888899999999999999999


Q ss_pred             ccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567          278 QIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV  354 (440)
Q Consensus       278 hl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi  354 (440)
                      |+....+.   ....+.||..|.|+++.++.+++..      +     ..++..+.|++..++...+.|.|. +.||
T Consensus       156 q~~~~~~~---~~~~p~~g~~~~~~~d~~i~l~~~~------~-----~~r~~~~~~~~~~~~~~~~~f~It-~~Gi  217 (218)
T cd01394         156 QVYSDVGS---GSVRPLGGHTLEHWSKVILRLEKLR------V-----GTRRAVLEKHRFRPEGSSVYFRIT-DKGI  217 (218)
T ss_pred             CCEEcCCC---CcccccCCcchhcceeEEEEEEEcC------C-----CeEEEEEeeCCCCCCCceEEEEEe-CCcc
Confidence            99876552   3455779999999999999999752      1     123445778888888788999998 7887

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK06321 replicative DNA helicase; Provisional

Probab=99.94  E-value=1.2e-25  Score=235.32  Aligned_cols=297  Identities=12%  Similarity=0.116  Sum_probs=212.0

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC---------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS---------  116 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~---------  116 (440)
                      ...++.+|...||.+|++++.+|+++..+.+....  +.+.+..+..+.++..+.+|.....+.....+.+         
T Consensus       100 ~~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  179 (472)
T PRK06321        100 EFAGTSAYIEEYAEIIRSKSILRKMIQTAKEIEKKALEEPKDVATALDEAQNLLFKISQTTNLAQYVLVADKLKGLTSSK  179 (472)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhccCCCCceEHHHHHhhhhcch
Confidence            34567799999999999999999999999888765  2234566666666666666655432222211111         


Q ss_pred             ---------------------CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcE
Q 013567          117 ---------------------AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNA  174 (440)
Q Consensus       117 ---------------------~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~v  174 (440)
                                           .......+||||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~tG~~~LD~~t-~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v  258 (472)
T PRK06321        180 DKPFLLQLQERQEAFQQSAQGDSSPMISGIPTHFIDLDKMI-NGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPV  258 (472)
T ss_pred             hhhHHHHHHHHHHHHhhhhccccCCCCCccccCcHHHHHHh-cCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeE
Confidence                                 11223568999999999999 7999999999999999999999999999887 457889


Q ss_pred             EEEcCCCCCChhhhhhh----cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcc
Q 013567          175 MLVDAEHAFDPSYSKAL----GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       175 v~id~E~~~~~~~a~~l----Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      +||+.||+..+...+.+    +++.                         .++++.+  ..+.+++...++.+.++.+++
T Consensus       259 ~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~  338 (472)
T PRK06321        259 GIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQ  338 (472)
T ss_pred             EEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            99999998776532221    2222                         1233432  246888999999888888899


Q ss_pred             eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Ccee--ecccceee
Q 013567          224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPEV--TSGGIALK  300 (440)
Q Consensus       224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~~--~~gG~~l~  300 (440)
                      +||||+++.+........      ...+..++..+.+.|+.+|++++++||+++|+.+.+..-.+ .|..  ..++.++.
T Consensus       339 lvvIDyLql~~~~~~~~~------~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IE  412 (472)
T PRK06321        339 FLIIDYLQLLSGSGNLRN------SESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIE  412 (472)
T ss_pred             EEEEcchHHcCCCCccCC------cchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhccccc
Confidence            999999998753111100      11344568899999999999999999999999877653221 2322  45788999


Q ss_pred             eeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          301 FFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       301 ~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                      ..+++.+++.|.+....   ++.. ....+.|.|||..|..   .+.+.|.....+..
T Consensus       413 qdAD~v~~l~R~~~y~~---~~~~-~~~elivaKnR~G~~G---~v~l~f~~~~~~f~  463 (472)
T PRK06321        413 QDSDLVMFLLRREYYDP---NDKP-GTAELIVAKNRHGSIG---SVPLVFEKEFARFR  463 (472)
T ss_pred             ccCCEEEEEechhhcCC---cCCC-CceEEEEEecCCCCCc---eEEEEEecCCCccc
Confidence            99999999988654431   1111 2468999999987764   55666666665444

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=99.94  E-value=2.2e-25  Score=231.56  Aligned_cols=280  Identities=19%  Similarity=0.158  Sum_probs=201.1

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccC--CCC-ccHHHHHHHHHHHHHHHH--hhcCCCCeeecc-------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGD-SRFLDRQRALDAAMNDIN--SSFGKGSVTRLG-------  115 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~~i~--~~~~~~~~~~~~-------  115 (440)
                      ...++.+|...||.+|++++.+|+++..+..+...  +.+ .+.++..+.++..+.++.  ..........+.       
T Consensus        82 ~~~~s~~ni~~Ya~~v~e~~~~R~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
T TIGR03600        82 NNTPSAANISSYARIVREKAKERKLIAACQRIIDLACSDGGQTAEQKVEEAQAALLALTGMSDGQERGFVTFGEVLEDVV  161 (421)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhccCcCCchhHHHHHHHHH
Confidence            34566789999999999999999998888877765  222 255666666666666665  322221111111       


Q ss_pred             ----C--CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhh
Q 013567          116 ----S--AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYS  188 (440)
Q Consensus       116 ----~--~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a  188 (440)
                          +  .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.+++||+.|++..+...
T Consensus       162 ~~~~~~~~~~~~~~gi~tG~~~LD~~~-~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~  240 (421)
T TIGR03600       162 RDLDKRFNPKGELTGLSTGLPKLDRLT-NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE  240 (421)
T ss_pred             HHHHHHhcCCCCCcceeCCChhHHHHh-cCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence                1  01223578999999999999 6999999999999999999999999998886 67889999999998776522


Q ss_pred             ----hhhccccc-------------------------ceeecCC--CCHHHHHHHHHHHHhcC-CcceEEEecccccCCc
Q 013567          189 ----KALGVDVE-------------------------NLIVCQP--DNGEMALEIADRMCRSG-AIDLICVDSVSALTPR  236 (440)
Q Consensus       189 ----~~lGv~~~-------------------------~l~i~~~--~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~~~  236 (440)
                          ...|++..                         ++++.+.  .+.+++...++++.... ++++||||+++.+.+.
T Consensus       241 Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~  320 (421)
T TIGR03600       241 RLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT  320 (421)
T ss_pred             HHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC
Confidence                22343321                         3444443  56888888888876655 7999999999998641


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCce--eecccceeeeeceEEEEEeecc
Q 013567          237 AEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPE--VTSGGIALKFFASVRLEIRSTG  313 (440)
Q Consensus       237 ~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~--~~~gG~~l~~~a~~rl~l~r~~  313 (440)
                         .   +.    .+...+..+.+.|+.+|++++++||+++|+++....-- ..|.  ...++..+.+.+++.+++.|..
T Consensus       321 ---~---~~----~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~  390 (421)
T TIGR03600       321 ---R---GR----DRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREG  390 (421)
T ss_pred             ---C---CC----CHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEecccc
Confidence               1   11    12345788999999999999999999999987654321 1232  2458889999999999999876


Q ss_pred             cccccCCCcccceEEEEEEeeccCCCCC
Q 013567          314 KIKSVKGDEDVGVRVRVRVQKSKVSRPY  341 (440)
Q Consensus       314 ~ik~~~g~~~~G~~~~v~v~Knr~~~p~  341 (440)
                      ....  ++..- ....+.|.|||..|.+
T Consensus       391 ~~~~--~~~~~-~~~el~v~K~R~G~~g  415 (421)
T TIGR03600       391 YYDA--REPPA-GVAELILAKNRHGPTG  415 (421)
T ss_pred             ccCC--ccCCC-CceEEEEECCCCCCCc
Confidence            5431  11111 2468999999976654

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.7e-25  Score=221.97  Aligned_cols=221  Identities=22%  Similarity=0.288  Sum_probs=184.3

Q ss_pred             eeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhh
Q 013567          112 TRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSK  189 (440)
Q Consensus       112 ~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~  189 (440)
                      ..+.+.......+++||+.+||++||||+-+|.++.|.|.||.|||||.||+++.+++.+ +++|+++|++..+.  ++.
T Consensus        62 ~~l~~i~~~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~  140 (456)
T COG1066          62 LKLSDIELEEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD  140 (456)
T ss_pred             eeeccceeeecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH
Confidence            344455555678999999999999999999999999999999999999999999999877 99999999999986  788


Q ss_pred             hhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 013567          190 ALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA  269 (440)
Q Consensus       190 ~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~  269 (440)
                      ++|+..+++++....+.++++..+++    .+++++||||++.++. .+++..+|..   .|.|+.   ...|.+++|+.
T Consensus       141 RL~~~~~~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s-~~~~SapGsV---sQVRe~---t~~L~~~AK~~  209 (456)
T COG1066         141 RLGLPTNNLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLYS-EEITSAPGSV---SQVREV---AAELMRLAKTK  209 (456)
T ss_pred             HhCCCccceEEehhcCHHHHHHHHHh----cCCCEEEEeccceeec-ccccCCCCcH---HHHHHH---HHHHHHHHHHc
Confidence            99999999999999999999888776    4799999999999995 7777666653   555554   45568889999


Q ss_pred             CCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEE
Q 013567          270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEII  349 (440)
Q Consensus       270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~  349 (440)
                      |++++++-|++++        -.++|.+.++|..|+.++++-         +. ..+.+-++.+|||+.+......|++.
T Consensus       210 ~i~~fiVGHVTKe--------G~IAGPrvLEHmVDtVlyFEG---------d~-~~~~RiLR~vKNRFG~t~EiGvFeM~  271 (456)
T COG1066         210 NIAIFIVGHVTKE--------GAIAGPRVLEHMVDTVLYFEG---------DR-HSRYRILRSVKNRFGATNELGVFEMT  271 (456)
T ss_pred             CCeEEEEEEEccc--------ccccCchheeeeeeEEEEEec---------cC-CCceeeeehhcccCCcccceeEEEEe
Confidence            9999999999863        236889999999999999964         21 12345779999999999989999997


Q ss_pred             eCCCcccchhhhhH
Q 013567          350 FGEGVSKLGCMLDC  363 (440)
Q Consensus       350 ~~~Gi~~~~~i~~~  363 (440)
                       ++|+....+-..+
T Consensus       272 -~~GL~eV~npS~l  284 (456)
T COG1066         272 -ENGLREVSNPSAL  284 (456)
T ss_pred             -cCCeeEecCcHHh
Confidence             8888655444333

>PRK05595 replicative DNA helicase; Provisional

Probab=99.93  E-value=4.2e-25  Score=230.92  Aligned_cols=295  Identities=16%  Similarity=0.138  Sum_probs=209.6

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC---------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS---------  116 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~---------  116 (440)
                      ...+.++|...||++|++++.+|+++..+......  +.+.+.++..+.++..+.++......+....+++         
T Consensus        92 ~~~~s~~ni~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~~~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  171 (444)
T PRK05595         92 NSIVSTANIQSYIKIVKDKSTLRRLIKSSTEIIENSYNNQDDVEKVIDSAEKKIFDISEKRTTSDFEPLSNVLERGFEQI  171 (444)
T ss_pred             HcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccCCccceeHHHHHHHHHHHH
Confidence            34667789999999999999999998887766654  2223555666666666666655443332211111         


Q ss_pred             ----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhh----
Q 013567          117 ----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSY----  187 (440)
Q Consensus       117 ----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~----  187 (440)
                          .......++|||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++ +.+.+|+||+.||+..+..    
T Consensus       172 ~~~~~~~~~~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~  250 (444)
T PRK05595        172 ENLFNNKGETTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLL  250 (444)
T ss_pred             HHHHhCCCCCCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHH
Confidence                01224568999999999998 8999999999999999999999999998865 5688999999999876642    


Q ss_pred             hhhhcccc-------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhc
Q 013567          188 SKALGVDV-------------------------ENLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE  240 (440)
Q Consensus       188 a~~lGv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~  240 (440)
                      +...+++.                         .++++.+.  .+.+++...++++....++++||||+++.+.....  
T Consensus       251 a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~--  328 (444)
T PRK05595        251 CSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKG--  328 (444)
T ss_pred             HHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCC--
Confidence            22223332                         13444333  46788888888887778899999999998753111  


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEeecccccc
Q 013567          241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRSTGKIKS  317 (440)
Q Consensus       241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~  317 (440)
                         .    ..+..++..+.+.|+.+|++++|+||+++|+++.+..-.+ .|.  ...++..+...+++.+++.|.+....
T Consensus       329 ---~----~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~  401 (444)
T PRK05595        329 ---S----ESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNK  401 (444)
T ss_pred             ---C----ccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEeccccccc
Confidence               0    1234568899999999999999999999999886643211 222  34578899999999999998654431


Q ss_pred             cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                       + .+.. ....+.|.|||..|.+   .+.+.|.....+..
T Consensus       402 -~-~~~~-~~~e~iv~K~R~G~~g---~~~~~~~~~~~~f~  436 (444)
T PRK05595        402 -E-TEDK-NVAECIIAKQRNGPTG---TVKLAWLGQYSKFG  436 (444)
T ss_pred             -c-cCCC-CceEEEEEccCCCCCc---eEEEEEecCCCccc
Confidence             1 1111 2368999999987665   56666666665444

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=99.93  E-value=6.1e-25  Score=206.76  Aligned_cols=200  Identities=23%  Similarity=0.375  Sum_probs=154.3

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhh-----cccccceeecCCCCH
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL-----GVDVENLIVCQPDNG  206 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~l-----Gv~~~~l~i~~~~~~  206 (440)
                      ||.+|+||+|+|++++|+||||+|||+||++++.+.++.+.+++||++|+ +.+.+...+     ....+++.+.++.+.
T Consensus         1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~   79 (209)
T TIGR02237         1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDF   79 (209)
T ss_pred             ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCH
Confidence            79999999999999999999999999999999999998899999999997 544422221     223477788877766


Q ss_pred             HHH---HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          207 EMA---LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       207 ee~---l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      .+.   +..+..++.+..+++|||||+++++. .+.+++..     .+.+.+.+.+..|..+++++++++|++||.+...
T Consensus        80 ~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~-~~~~~~~~-----~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~  153 (209)
T TIGR02237        80 DEQGVAIQKTSKFIDRDSASLVVVDSFTALYR-LELSDDRI-----SRNRELARQLTLLLSLARKKNLAVVITNQVYTDV  153 (209)
T ss_pred             HHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH-HHhCCccH-----HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEec
Confidence            555   44444555666899999999999873 33332211     2344566777889999999999999999998655


Q ss_pred             ccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567          284 GVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV  354 (440)
Q Consensus       284 g~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi  354 (440)
                      +.   ....+.||..|.|+++.++.+++..           + .+++.+.|++..++...+.|.|. +.||
T Consensus       154 ~~---~~~~~~gg~~~~~~~d~vi~l~~~~-----------~-~r~~~i~k~~~~~~~~~~~f~It-~~Gi  208 (209)
T TIGR02237       154 NN---GTLRPLGGHLLEHWSKVILRLEKFR-----------G-RRLATLEKHRSRPEGESVYFRIT-DDGI  208 (209)
T ss_pred             CC---CCCcCCCcchhheeeeEEEEEEecC-----------C-EEEEEEEECCCCCCCCeEEEEEe-CCcc
Confidence            42   2346789999999999999998631           2 24667899888888888999998 7787

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=99.93  E-value=4.4e-25  Score=224.71  Aligned_cols=214  Identities=23%  Similarity=0.316  Sum_probs=170.5

Q ss_pred             eccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhh
Q 013567          113 RLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKA  190 (440)
Q Consensus       113 ~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~  190 (440)
                      ++.+......++++||+++||++|+|||++|+++.|.|+||+|||||+++++....+.+.+++|+++|++.++.  ++++
T Consensus        52 ~~~~~~~~~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~r  131 (372)
T cd01121          52 PLSDIEAEEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADR  131 (372)
T ss_pred             EhhhccccccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHH
Confidence            33343344567899999999999999999999999999999999999999999998888899999999987764  5678


Q ss_pred             hcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 013567          191 LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAG  270 (440)
Q Consensus       191 lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~  270 (440)
                      +|++.+++.+....+.+++.+.++    ..+++++||||++.++. .+.++.+|..   .|   +++.+..|.+++++++
T Consensus       132 lg~~~~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~q---vr~~~~~L~~lak~~~  200 (372)
T cd01121         132 LGISTENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYS-SELTSAPGSV---SQ---VRECTAELMRFAKERN  200 (372)
T ss_pred             cCCCcccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhc-cccccCCCCH---HH---HHHHHHHHHHHHHHcC
Confidence            999999998887777777766654    35799999999999873 3333222321   12   4566778899999999


Q ss_pred             CEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEe
Q 013567          271 CTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIF  350 (440)
Q Consensus       271 ~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~  350 (440)
                      +|+|+++|+.++-        ..+|.+.+.|.+|.++.++...       .   ...+.++++|||..+......|+|. 
T Consensus       201 itvilvghvtk~g--------~~aG~~~leh~vD~Vi~le~~~-------~---~~~R~Lri~KnR~g~~~ei~~F~i~-  261 (372)
T cd01121         201 IPIFIVGHVTKEG--------SIAGPKVLEHMVDTVLYFEGDR-------H---SEYRILRSVKNRFGSTNELGVFEMR-  261 (372)
T ss_pred             CeEEEEeeccCCC--------cccCcccchhhceEEEEEEcCC-------C---CcEEEEEEEeCCCCCCCCEEEEEEC-
Confidence            9999999987531        1456788999999999887531       1   1346789999999988888899998 


Q ss_pred             CCCccc
Q 013567          351 GEGVSK  356 (440)
Q Consensus       351 ~~Gi~~  356 (440)
                      ++|+..
T Consensus       262 ~~Gl~~  267 (372)
T cd01121         262 ENGLRE  267 (372)
T ss_pred             CCCeEE
Confidence            899964

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR00416 sms DNA repair protein RadA

Probab=99.93  E-value=4e-25  Score=230.74  Aligned_cols=214  Identities=21%  Similarity=0.272  Sum_probs=170.4

Q ss_pred             eccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhh
Q 013567          113 RLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKA  190 (440)
Q Consensus       113 ~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~  190 (440)
                      ++.+.......+++||+++||++|+|||++|++++|.|+||+|||||+++++..+.+.+.+++|+++|++..+.  ++++
T Consensus        64 ~~~~~~~~~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~r  143 (454)
T TIGR00416        64 TISAIELEEVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIR  143 (454)
T ss_pred             EhhhccccccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHH
Confidence            33344444567999999999999999999999999999999999999999999998888899999999988775  4678


Q ss_pred             hcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 013567          191 LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAG  270 (440)
Q Consensus       191 lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~  270 (440)
                      +|++.+++++....+.+++.+.+.    ..+++++||||++.++. .++++.+|..   .|   +++.+..|.+++++.|
T Consensus       144 lg~~~~~l~~~~e~~~~~I~~~i~----~~~~~~vVIDSIq~l~~-~~~~~~~g~~---~q---~r~~~~~L~~~ak~~g  212 (454)
T TIGR00416       144 LGLPEPNLYVLSETNWEQICANIE----EENPQACVIDSIQTLYS-PDISSAPGSV---SQ---VRECTAELMRLAKTRG  212 (454)
T ss_pred             cCCChHHeEEcCCCCHHHHHHHHH----hcCCcEEEEecchhhcc-cccccCCCCH---HH---HHHHHHHHHHHHHHhC
Confidence            999999999988777776666554    35789999999999874 4443333322   22   3455777899999999


Q ss_pred             CEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEe
Q 013567          271 CTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIF  350 (440)
Q Consensus       271 ~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~  350 (440)
                      +|+|+++|+.+. +       ..+|...+.|.+|..+.+++..          .+..+.++++|||..+......|+|. 
T Consensus       213 iTvllt~hvtke-g-------~~aG~~~le~lvD~VI~Le~~~----------~~~~R~L~v~K~R~g~~~e~~~f~it-  273 (454)
T TIGR00416       213 IAIFIVGHVTKE-G-------SIAGPKVLEHMVDTVLYFEGDR----------DSRFRILRSVKNRFGATNEIGIFEMT-  273 (454)
T ss_pred             CEEEEEeccccC-C-------ccCCcccEeeeceEEEEEeccC----------CCcEEEEEEecCCCCCCCcEEEEEEe-
Confidence            999999998753 1       2356678999999999997521          12345889999999888788899998 


Q ss_pred             CCCccc
Q 013567          351 GEGVSK  356 (440)
Q Consensus       351 ~~Gi~~  356 (440)
                      ++|+..
T Consensus       274 ~~Gl~~  279 (454)
T TIGR00416       274 EQGLRE  279 (454)
T ss_pred             cCCcee
Confidence            899963

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK08760 replicative DNA helicase; Provisional

Probab=99.93  E-value=4.4e-25  Score=231.80  Aligned_cols=295  Identities=14%  Similarity=0.146  Sum_probs=207.9

Q ss_pred             ccccccchhhHHHHhhcccccccccccccccccCC--CC-ccHHHHHHHHHHHHHHHHhhcCC--CCeeecc--------
Q 013567           49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDS--GD-SRFLDRQRALDAAMNDINSSFGK--GSVTRLG--------  115 (440)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~--------  115 (440)
                      ..++++|...||.+|++++.+|+++..+.......  .+ ....+..+.++..+.++...-..  .....+.        
T Consensus       118 ~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  197 (476)
T PRK08760        118 TTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEGRESIELLASAEKAVFKIAEAGARGRTDFVAMPGALKDAFE  197 (476)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhccccccCCceeHHHHHHHHHH
Confidence            45677899999999999999999998888876652  21 24555555566666666443111  1111111        


Q ss_pred             ---C--CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhh
Q 013567          116 ---S--AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSK  189 (440)
Q Consensus       116 ---~--~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~  189 (440)
                         .  .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++. .+.+|+||+.||+..+...+
T Consensus       198 ~~~~~~~~~~~~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~R  276 (476)
T PRK08760        198 ELRNRFENGGNITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMR  276 (476)
T ss_pred             HHHHHHhCCCCCCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHH
Confidence               0  01234568999999999988 78999999999999999999999999998874 47789999999988765322


Q ss_pred             hh----cccc-------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchh
Q 013567          190 AL----GVDV-------------------------ENLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE  238 (440)
Q Consensus       190 ~l----Gv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~e  238 (440)
                      .+    +++.                         .++++.+.  .+.+++...++++.+..++++||||+++.+.....
T Consensus       277 l~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~  356 (476)
T PRK08760        277 LISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN  356 (476)
T ss_pred             HHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCC
Confidence            21    1221                         13344332  46788989999888888899999999998752111


Q ss_pred             hcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCcee--ecccceeeeeceEEEEEeecccc
Q 013567          239 IEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPEV--TSGGIALKFFASVRLEIRSTGKI  315 (440)
Q Consensus       239 l~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~~--~~gG~~l~~~a~~rl~l~r~~~i  315 (440)
                           +    ..+...++.+.+.|+.+|++++++||+++|+++.+..-- ..|..  ..++..+.+.+++.+++.|....
T Consensus       357 -----~----~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y  427 (476)
T PRK08760        357 -----S----ENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYY  427 (476)
T ss_pred             -----C----cccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhc
Confidence                 0    123456789999999999999999999999988664321 12322  45888999999999999886544


Q ss_pred             cccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          316 KSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       316 k~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                      .. +..+.. ....+.|.|||..|+.   .+.+.|.....++.
T Consensus       428 ~~-~~~~~~-~~~eliiaKnR~G~~g---~~~l~f~~~~~~f~  465 (476)
T PRK08760        428 NK-ENSPDK-GLAEIIIGKHRGGPTG---SCKLKFFGEYTRFD  465 (476)
T ss_pred             cc-ccccCC-CceEEEEEccCCCCCc---eEEEEEecCCCcee
Confidence            31 101111 2368999999987765   56666666665444

>PRK05748 replicative DNA helicase; Provisional

Probab=99.93  E-value=4.2e-25  Score=231.20  Aligned_cols=295  Identities=14%  Similarity=0.144  Sum_probs=207.5

Q ss_pred             ccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC----------
Q 013567           49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS----------  116 (440)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~----------  116 (440)
                      ..++++|.+.||.+|++++.+|+++..+......  +......+..+.++..+.++.+....+....+.+          
T Consensus        95 ~~~s~~ni~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~i~~~~~~~~~~l~  174 (448)
T PRK05748         95 SVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPEDDADEILDEAEKKIFEVSERRNKSGFKNIKDVLVKAYDRIE  174 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhccCccCCcCHHHHHHHHHHHHH
Confidence            4677789999999999999999998888777654  2223455555666666666655433222211110          


Q ss_pred             ---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhhhh-
Q 013567          117 ---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSKAL-  191 (440)
Q Consensus       117 ---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~~l-  191 (440)
                         .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.+++||+.|++..+...+.+ 
T Consensus       175 ~~~~~~~~~~gi~TG~~~LD~~~-~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~  253 (448)
T PRK05748        175 MLHNQTGDITGIPTGFTDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLC  253 (448)
T ss_pred             HHHhcCCCCCCccCChHHHHHhc-CCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHH
Confidence               01224568999999999998 7999999999999999999999999999986 45889999999998877532221 


Q ss_pred             ---cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEecccccCCchhhc
Q 013567          192 ---GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSALTPRAEIE  240 (440)
Q Consensus       192 ---Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~~~~el~  240 (440)
                         +++.                         .++++.+  ..+.+++...++++.+.. ++++||||+++.+..... .
T Consensus       254 ~~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~-~  332 (448)
T PRK05748        254 AEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGR-S  332 (448)
T ss_pred             HhcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCC-C
Confidence               2211                         1234432  246788888888887776 799999999998853110 0


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEeecccccc
Q 013567          241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRSTGKIKS  317 (440)
Q Consensus       241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~  317 (440)
                         ++    .+.+++..+.+.|+.+|++++++||+++|+.+.+..-.+ .|.  ...++..+.+.++..+++.|......
T Consensus       333 ---~~----~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~  405 (448)
T PRK05748        333 ---GE----NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDE  405 (448)
T ss_pred             ---Cc----CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCc
Confidence               11    234568899999999999999999999999886532211 222  24577889999999999988654321


Q ss_pred             cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                        ..+.. ....+.|.|||..|+.   .+.+.|.....+..
T Consensus       406 --~~~~~-~~~e~~v~K~R~G~~g---~~~~~~~~~~~~f~  440 (448)
T PRK05748        406 --ETENK-NTIEIIIAKQRNGPVG---TVELAFQKEYNKFV  440 (448)
T ss_pred             --cccCC-CceEEEEeccCCCCCc---eEEEEEeCCCCccc
Confidence              11111 2468999999987765   46666666665443

>PRK05636 replicative DNA helicase; Provisional

Probab=99.93  E-value=6.9e-25  Score=231.23  Aligned_cols=294  Identities=15%  Similarity=0.148  Sum_probs=206.5

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccC--CCC--ccHHHHHHHHHHHHHHHHhhcCCCCeeec---------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGD--SRFLDRQRALDAAMNDINSSFGKGSVTRL---------  114 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~i~~~~~~~~~~~~---------  114 (440)
                      ...++++|...||.+|++++.+|+++..+......  +.+  ...++..+.+++.+.+|...-.......+         
T Consensus       154 ~~~~s~aNi~~Ya~iVke~a~~R~li~~~~~i~~~~~~~~~~~~~~~~i~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~  233 (505)
T PRK05636        154 QSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEGAEIDSVIDRAQQEVFAVSQKNQSEDYAVLADILDPTMD  233 (505)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHH
Confidence            34667789999999999999999998887776554  111  24455555555555555443221111110         


Q ss_pred             --cC--CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhh
Q 013567          115 --GS--AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSK  189 (440)
Q Consensus       115 --~~--~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~  189 (440)
                        ..  .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.+++||+.||+..+...+
T Consensus       234 ~i~~~~~~~~~~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R  312 (505)
T PRK05636        234 ELEMLSSQGGIATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMR  312 (505)
T ss_pred             HHHHHHhCCCCCCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHH
Confidence              00  01223568999999999987 8999999999999999999999999998876 457789999999987765322


Q ss_pred             hh----cccc-------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchh
Q 013567          190 AL----GVDV-------------------------ENLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE  238 (440)
Q Consensus       190 ~l----Gv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~e  238 (440)
                      .+    +++.                         .++++.+.  .+..++...++++....++++||||+++.+.+...
T Consensus       313 ~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~  392 (505)
T PRK05636        313 LLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKR  392 (505)
T ss_pred             HHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC
Confidence            11    1211                         23445432  46788999999888888899999999998853111


Q ss_pred             hcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Ccee--ecccceeeeeceEEEEEeecccc
Q 013567          239 IEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPEV--TSGGIALKFFASVRLEIRSTGKI  315 (440)
Q Consensus       239 l~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~~--~~gG~~l~~~a~~rl~l~r~~~i  315 (440)
                      .         ..+.+++..+.+.|+.+|++++|+||+++|+++.+..-.+ .|..  ..++..+.+.+++.+++.|.+..
T Consensus       393 ~---------~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y  463 (505)
T PRK05636        393 V---------ESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQ  463 (505)
T ss_pred             C---------CcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEeccccc
Confidence            0         1234568999999999999999999999999987653221 2332  45788999999999999987544


Q ss_pred             cccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccc
Q 013567          316 KSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKL  357 (440)
Q Consensus       316 k~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~  357 (440)
                      ..  ..+..| ...+.|.|||-.|..   .+.+.|.....++
T Consensus       464 ~~--~~~~~g-~~elivaK~RnG~~G---tv~l~f~~~~~rF  499 (505)
T PRK05636        464 DK--DDERAG-EADIILAKHRGGPID---TVQVAHQLHYSRF  499 (505)
T ss_pred             CC--ccCCCC-ceEEEEecCCCCCCc---eEEEEeecCcccc
Confidence            31  111112 368999999977664   5666666655443

>PRK08006 replicative DNA helicase; Provisional

Probab=99.93  E-value=8.9e-25  Score=228.95  Aligned_cols=296  Identities=14%  Similarity=0.096  Sum_probs=209.2

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccCC--CC-ccHHHHHHHHHHHHHHHHhhcCCC--Ceee---------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDS--GD-SRFLDRQRALDAAMNDINSSFGKG--SVTR---------  113 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~i~~~~~~~--~~~~---------  113 (440)
                      ...++++|...||.+|++++.+|+++..+.+.....  .+ .+.++..+.++..+.+|.......  ....         
T Consensus       111 ~~~~s~ani~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  190 (471)
T PRK08006        111 KNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKDEGPKNIADILDATV  190 (471)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccCCCCCCceeHHHHHHHHH
Confidence            345667899999999999999999999888887652  22 355566666666666665432221  1111         


Q ss_pred             --ccC---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhh
Q 013567          114 --LGS---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSY  187 (440)
Q Consensus       114 --~~~---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~  187 (440)
                        +.+   .....+.++|||++.||.++ ||+.+|+++.|.|+||+|||+||++++.+++ +.+.+|+||+.||+..+..
T Consensus       191 ~~i~~~~~~~~~~~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~  269 (471)
T PRK08006        191 ARIEQLFQQPHDGVTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM  269 (471)
T ss_pred             HHHHHHHhcCCCCCCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence              111   11234678999999999998 8999999999999999999999999999987 4577899999999876642


Q ss_pred             hhhh----cccc--------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEecccccC
Q 013567          188 SKAL----GVDV--------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSALT  234 (440)
Q Consensus       188 a~~l----Gv~~--------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~  234 (440)
                      .+.+    +++.                          .++++.+  ..+..++...++++.+++ ++++||||+++.+.
T Consensus       270 ~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~  349 (471)
T PRK08006        270 MRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR  349 (471)
T ss_pred             HHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence            2211    1111                          2344443  246888999888887665 69999999999875


Q ss_pred             CchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEee
Q 013567          235 PRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRS  311 (440)
Q Consensus       235 ~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r  311 (440)
                      .... .        ..+..+++.+.+.|+.+|++++|+||+++|+.+.+..-.+ .|.  ...++..+...+++.+++.|
T Consensus       350 ~~~~-~--------~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R  420 (471)
T PRK08006        350 VPSL-S--------DNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR  420 (471)
T ss_pred             CCCC-C--------CCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEec
Confidence            3111 0        1234568899999999999999999999999987643211 222  24578889999999999998


Q ss_pred             cccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567          312 TGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC  359 (440)
Q Consensus       312 ~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~  359 (440)
                      ...... + .+.. ....+.|.|||..|.+   .+.+.|.....+..+
T Consensus       421 ~~~y~~-~-~~~~-g~~elivaKnR~G~~G---~v~l~f~~~~~~f~~  462 (471)
T PRK08006        421 DEVYHE-N-SDLK-GIAEIIIGKQRNGPIG---TVRLTFNGQWSRFDN  462 (471)
T ss_pred             cccccc-c-cCCC-CceEEEEecccCCCCc---eEEEEEccCcccccC
Confidence            654431 1 1111 2358899999987664   556666666654443

>TIGR00665 DnaB replicative DNA helicase

Probab=99.93  E-value=9.2e-25  Score=227.80  Aligned_cols=291  Identities=15%  Similarity=0.125  Sum_probs=206.9

Q ss_pred             ccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC----------
Q 013567           49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS----------  116 (440)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~----------  116 (440)
                      .+++++|+..||.+|++.+.+|++...+..+...  +...+..+..+.++..+..|............++          
T Consensus        87 ~~~~~~n~~~ya~~v~e~~~~R~l~~~~~~~~~~a~~~~~~~~e~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  166 (434)
T TIGR00665        87 NVPSAANIEYYAEIVKEKAILRRLIEAGTEIVELAYDPEGDVEELLDEAEQKIFEIAESRTSGGFKSIKEILKDTVEEIE  166 (434)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHH
Confidence            4566789999999999999999998877777665  2233566666777777777765433323222111          


Q ss_pred             ---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhh---
Q 013567          117 ---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSK---  189 (440)
Q Consensus       117 ---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~---  189 (440)
                         .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++. .+.+++||+.|++..+...+   
T Consensus       167 ~~~~~~~~~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~  245 (434)
T TIGR00665       167 ELYERGGGITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLS  245 (434)
T ss_pred             HHHhCCCCCCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHH
Confidence               01224678999999999999 79999999999999999999999999999775 57889999999987764222   


Q ss_pred             -hhcccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcc
Q 013567          190 -ALGVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEG  241 (440)
Q Consensus       190 -~lGv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~  241 (440)
                       ..+++.                         .++++.+  ..+.+++...++.+.++.++++||||+++.+.....   
T Consensus       246 ~~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~---  322 (434)
T TIGR00665       246 SESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR---  322 (434)
T ss_pred             HhcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC---
Confidence             122221                         1233432  246788888898888888899999999998853111   


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeeccccccc
Q 013567          242 EIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKSV  318 (440)
Q Consensus       242 ~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~  318 (440)
                        ++    .+..++..+++.|+.+|++++|+||+++|+.+..+.-.+ .|  ....++..+.+.++..+.+.|...... 
T Consensus       323 --~~----~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~-  395 (434)
T TIGR00665       323 --SE----NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNP-  395 (434)
T ss_pred             --CC----CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccCC-
Confidence              00    233457888999999999999999999999876542111 12  234577889999999999988654431 


Q ss_pred             CCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          319 KGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       319 ~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                       .++. ...+.+.|.|||..+++   .+.+.|.....
T Consensus       396 -~~~~-~~~~~l~v~KnR~G~~g---~~~l~~~~~~~  427 (434)
T TIGR00665       396 -DSED-KGIAEIIIAKQRNGPTG---TVKLAFQGEYT  427 (434)
T ss_pred             -CcCC-CCceEEEEecCCCCCCC---eEEEEEecCCC
Confidence             1111 13478999999987654   45565655443

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK11823 DNA repair protein RadA; Provisional

Probab=99.93  E-value=1.6e-24  Score=226.05  Aligned_cols=213  Identities=22%  Similarity=0.317  Sum_probs=168.9

Q ss_pred             CCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcc
Q 013567          116 SAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGV  193 (440)
Q Consensus       116 ~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv  193 (440)
                      +.......+++||+++||++|+|||++|+++.|+|+||+|||||+++++....+.+.+++|+++|++.++.  +++++|+
T Consensus        53 ~~~~~~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~  132 (446)
T PRK11823         53 DIEAEEEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGL  132 (446)
T ss_pred             hcccccCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCC
Confidence            33334567899999999999999999999999999999999999999999998888899999999988775  5778999


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEE
Q 013567          194 DVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTL  273 (440)
Q Consensus       194 ~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tV  273 (440)
                      +.+++++....+.+++++.++    +.+++++||||++.++. .++++.+|..   .   .+++.+..|..+++++++++
T Consensus       133 ~~~~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~---qvr~~~~~L~~~ak~~~itv  201 (446)
T PRK11823        133 PSDNLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMYS-PELESAPGSV---S---QVRECAAELMRLAKQRGIAV  201 (446)
T ss_pred             ChhcEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhcc-ccccCCCCCH---H---HHHHHHHHHHHHHHHcCCEE
Confidence            999988887777776666554    35789999999999874 4444333321   1   24556777899999999999


Q ss_pred             EEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCC
Q 013567          274 IFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEG  353 (440)
Q Consensus       274 I~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~G  353 (440)
                      |+++|+...-        ..+|...+.|.++.++.+...      .+    +..+.++++|||..+......|+|. ++|
T Consensus       202 ilv~hvtk~~--------~~ag~~~lehlvD~Vi~le~~------~~----~~~R~l~i~K~R~g~~~e~~~f~it-~~G  262 (446)
T PRK11823        202 FLVGHVTKEG--------AIAGPRVLEHMVDTVLYFEGD------RH----SRYRILRAVKNRFGATNEIGVFEMT-EQG  262 (446)
T ss_pred             EEEeeccCCC--------CcCCcchhhhhCeEEEEEEcC------CC----CceEEEEEccCCCCCCCceEEEEEc-CCC
Confidence            9999987531        134567899999999988631      01    2346799999999888877889998 899


Q ss_pred             cccch
Q 013567          354 VSKLG  358 (440)
Q Consensus       354 i~~~~  358 (440)
                      +....
T Consensus       263 i~~v~  267 (446)
T PRK11823        263 LREVS  267 (446)
T ss_pred             ceECC
Confidence            97443

>PRK09165 replicative DNA helicase; Provisional

Probab=99.93  E-value=9.6e-25  Score=230.53  Aligned_cols=300  Identities=15%  Similarity=0.159  Sum_probs=208.8

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccCCCC----ccHHHHHHHHHHHHHHHHhhcC-CCCeeeccC------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGD----SRFLDRQRALDAAMNDINSSFG-KGSVTRLGS------  116 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~i~~~~~-~~~~~~~~~------  116 (440)
                      ..+++++|...||.+|++++.+|+++..+.......-+    .+..+..+.+++.+.++..... ......+.+      
T Consensus       105 ~~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~i~~~a~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~  184 (497)
T PRK09165        105 TEAVTIINARDYGRIIYDLALRRELINIGEDVVNNAYDAPVDVAPQEQIEDAEQKLYELAETGRYEGGFQSFGTAITEAV  184 (497)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHH
Confidence            35677899999999999999999999888887755222    2344555555555555544221 112211111      


Q ss_pred             -------CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---------------CCcE
Q 013567          117 -------AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL---------------GGNA  174 (440)
Q Consensus       117 -------~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---------------~~~v  174 (440)
                             .......++|||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++..               +.+|
T Consensus       185 ~~~~~~~~~~~~~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~v  263 (497)
T PRK09165        185 DMANAAFKRDGHLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVV  263 (497)
T ss_pred             HHHHHHHhCCCCCCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeE
Confidence                   11224668999999999999 899999999999999999999999999988753               5789


Q ss_pred             EEEcCCCCCChhhh----hhhccccc-------------------------ceeecC--CCCHHHHHHHHHHHHhcCCcc
Q 013567          175 MLVDAEHAFDPSYS----KALGVDVE-------------------------NLIVCQ--PDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       175 v~id~E~~~~~~~a----~~lGv~~~-------------------------~l~i~~--~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      +||+.||+.++...    ...+++..                         ++++.+  ..+.+++...++++.+.++++
T Consensus       264 l~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~  343 (497)
T PRK09165        264 GFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLD  343 (497)
T ss_pred             EEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            99999999877532    22344321                         234433  246888999999888888899


Q ss_pred             eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceee
Q 013567          224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALK  300 (440)
Q Consensus       224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~  300 (440)
                      +||||+++.+..... ..  +    ..+.++++.+.+.|+.+|++++|+||+++|+++.+..--+ .|.  ...++.++.
T Consensus       344 lvvIDyLqli~~~~~-~~--~----~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE  416 (497)
T PRK09165        344 LLVVDYLQLIRGSSK-RS--S----DNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIE  416 (497)
T ss_pred             EEEEcchHhccCCCC-CC--C----CchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchh
Confidence            999999998763111 00  1    1234468899999999999999999999999887653221 232  245788999


Q ss_pred             eeceEEEEEeecccccccC-CC-c------------ccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          301 FFASVRLEIRSTGKIKSVK-GD-E------------DVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       301 ~~a~~rl~l~r~~~ik~~~-g~-~------------~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                      ..+++.+++.|.+...... .. .            -......+.|.|||..|..   .+.+.|.....++.
T Consensus       417 qdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g---~~~~~f~~~~~~f~  485 (497)
T PRK09165        417 QDADVVMFVYREEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTG---TVKLAFESEFTRFG  485 (497)
T ss_pred             ccCCEEEEEeehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCe---eEEEEEecCCCccc
Confidence            9999999998864332100 00 0            0012368899999987764   56666666665444

>PRK06749 replicative DNA helicase; Provisional

Probab=99.93  E-value=1.9e-24  Score=224.32  Aligned_cols=290  Identities=14%  Similarity=0.053  Sum_probs=203.0

Q ss_pred             ccccccchhhHHHHhhcccccccccccccccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC----------CC
Q 013567           49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS----------AG  118 (440)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~----------~~  118 (440)
                      ..++++|...||.+|++++.+|+++..+..+.....+....+..+.++..+.++...-..+. ..+.+          ..
T Consensus        84 ~~~s~~n~~~ya~~v~~~~~~R~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~  162 (428)
T PRK06749         84 GVPTTSNFSYYEGLVRGAWKMYQAGVLGHKMGERLIAEKSEKIIGETITALCELEEKDCVCE-FDLKDALVDLYEELHQD  162 (428)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHccCCCCC-ccHHHHHHHHHHHHHhc
Confidence            45667899999999999999999988888776653333445555555555555544321111 11100          11


Q ss_pred             CCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhh----ccc
Q 013567          119 GALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL----GVD  194 (440)
Q Consensus       119 ~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~l----Gv~  194 (440)
                      .....++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.++++.+.+++||+.||+..+...+-+    +++
T Consensus       163 ~~~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~  241 (428)
T PRK06749        163 AKEITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVS  241 (428)
T ss_pred             CCCCCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHhccCCC
Confidence            234678999999999988 899999999999999999999999999999988889999999998776422211    111


Q ss_pred             c---------------------------cceeecCC--CCHHHHHHHHHHHHhcCC--cceEEEecccccCCchhhcccc
Q 013567          195 V---------------------------ENLIVCQP--DNGEMALEIADRMCRSGA--IDLICVDSVSALTPRAEIEGEI  243 (440)
Q Consensus       195 ~---------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~--~~lvVIDsl~~l~~~~el~~~~  243 (440)
                      .                           -++++.+.  .+..++...++++.+..+  +.+||||+++.+.....-    
T Consensus       242 ~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~~----  317 (428)
T PRK06749        242 GGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPKH----  317 (428)
T ss_pred             HHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCCC----
Confidence            1                           12344332  457788888888876655  559999999987531100    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Ccee--ecccceeeeeceEEEEEeecccccccCC
Q 013567          244 GMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPEV--TSGGIALKFFASVRLEIRSTGKIKSVKG  320 (440)
Q Consensus       244 g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~~--~~gG~~l~~~a~~rl~l~r~~~ik~~~g  320 (440)
                      +    ..+..++..+.+.|+.+|++++|+||+++|+++.+..-.+ .|..  ..++..++..++..+++.|...... + 
T Consensus       318 ~----~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~-~-  391 (428)
T PRK06749        318 K----GNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDK-E-  391 (428)
T ss_pred             C----CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeecccccc-c-
Confidence            0    1234568899999999999999999999999987653222 2322  4478889999999999998754431 1 


Q ss_pred             CcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567          321 DEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV  354 (440)
Q Consensus       321 ~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi  354 (440)
                      .+. .....+.|.|||..|+.   .+.+.|....
T Consensus       392 ~~~-~~~~eliiaKnR~G~~G---~v~~~f~~~~  421 (428)
T PRK06749        392 TMQ-KEMTEIHVAKHRNGPVG---SFKLRFLKEF  421 (428)
T ss_pred             ccC-CCceEEEEecCCCCCCc---eEEEEEecCc
Confidence            111 12368899999977665   4556555544

>PRK08840 replicative DNA helicase; Provisional

Probab=99.93  E-value=2.8e-24  Score=224.86  Aligned_cols=295  Identities=13%  Similarity=0.098  Sum_probs=209.9

Q ss_pred             ccccccchhhHHHHhhcccccccccccccccccC--CCC-ccHHHHHHHHHHHHHHHHhhcCC--CCeeec---------
Q 013567           49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGD-SRFLDRQRALDAAMNDINSSFGK--GSVTRL---------  114 (440)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~---------  114 (440)
                      ..++++|...||.+|++++.+|+++..+......  +.. .+.++..+.++..+..|......  .....+         
T Consensus       105 ~~~s~~ni~~Ya~iVke~s~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  184 (464)
T PRK08840        105 NTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSENEGPQNVDSILEKTLE  184 (464)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccCcCCCCceeHHHHHHHHHH
Confidence            4566789999999999999999999888888655  222 45666777777777777654332  111111         


Q ss_pred             --cC---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhh
Q 013567          115 --GS---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYS  188 (440)
Q Consensus       115 --~~---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a  188 (440)
                        ..   .....+.++|||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++. .+.+++||+.||+..+...
T Consensus       185 ~i~~~~~~~~~~~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~  263 (464)
T PRK08840        185 RIELLYKTPQDGVTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMM  263 (464)
T ss_pred             HHHHHHhcCCCCCCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHH
Confidence              11   11234678999999999998 89999999999999999999999999999874 5778999999998776522


Q ss_pred             hh----hcccc--------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEecccccCC
Q 013567          189 KA----LGVDV--------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSALTP  235 (440)
Q Consensus       189 ~~----lGv~~--------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~~  235 (440)
                      +.    .+++.                          .++++.+  ..+..++...++++.+.. ++++||||+++.+..
T Consensus       264 Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~  343 (464)
T PRK08840        264 RMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRV  343 (464)
T ss_pred             HHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCC
Confidence            21    12211                          1344443  246788888888887654 589999999998853


Q ss_pred             chhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCce--eecccceeeeeceEEEEEeec
Q 013567          236 RAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPE--VTSGGIALKFFASVRLEIRST  312 (440)
Q Consensus       236 ~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~--~~~gG~~l~~~a~~rl~l~r~  312 (440)
                      ... .        ..+.+++..+.+.|+.+|++++|+||+++|+.+.+..-- ..|.  ...++..++..+++.+++.|.
T Consensus       344 ~~~-~--------~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~  414 (464)
T PRK08840        344 PAL-S--------DNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRD  414 (464)
T ss_pred             CCC-C--------CchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecc
Confidence            111 0        123456889999999999999999999999988664321 1232  245788999999999999986


Q ss_pred             ccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567          313 GKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC  359 (440)
Q Consensus       313 ~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~  359 (440)
                      +....  ..+..| ...+.|.|||-.|.+   .+.+.|.....+..+
T Consensus       415 ~~y~~--~~~~~~-~~elivaKnR~G~~G---~v~l~f~~~~~~f~~  455 (464)
T PRK08840        415 EVYNP--DSPLKG-TAEIIIGKQRNGPIG---SVRLTFQGQYSRFDN  455 (464)
T ss_pred             cccCC--CcCCCC-ceEEEEecccCCCCc---eEEEEEecCcccccC
Confidence            54431  111112 368899999987765   456666666554443

>PRK08506 replicative DNA helicase; Provisional

Probab=99.93  E-value=2.5e-24  Score=226.19  Aligned_cols=292  Identities=14%  Similarity=0.152  Sum_probs=205.5

Q ss_pred             cchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeee-----------ccC---C
Q 013567           54 ASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTR-----------LGS---A  117 (440)
Q Consensus        54 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-----------~~~---~  117 (440)
                      +|...||.+|++++.+|+++..+..+...  +.+.+.++..+.++..+.+|...-.......           +..   .
T Consensus        88 ~ni~~Ya~iV~e~~~~R~li~~~~~i~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (472)
T PRK08506         88 DNIEAYVEEIKEKSIKRELLSLANTIPEQAVEEDQKSSDILDEVERELYSITNGSNSEDFKDSKEVIESTMEHIKKQKRL  167 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999988888765  2334555666666666666654322222111           110   1


Q ss_pred             CCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhh----hcc
Q 013567          118 GGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA----LGV  193 (440)
Q Consensus       118 ~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~----lGv  193 (440)
                      ......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.++++.+.+|+||+.||+..+...+.    .++
T Consensus       168 ~~~~~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v  246 (472)
T PRK08506        168 GNKDIIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSI  246 (472)
T ss_pred             CCCCCCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCC
Confidence            1223668999999999998 89999999999999999999999999999988888999999999877653221    233


Q ss_pred             cc-------------------------cceeecCC--CCHHHHHHHHHHHHhc-CCcceEEEecccccCCchhhcccchh
Q 013567          194 DV-------------------------ENLIVCQP--DNGEMALEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGM  245 (440)
Q Consensus       194 ~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~  245 (440)
                      +.                         .++++.+.  .+++++...++++.+. +++++||||+++.+.+....      
T Consensus       247 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~------  320 (472)
T PRK08506        247 PLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNF------  320 (472)
T ss_pred             CHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCC------
Confidence            22                         23445432  4688899988888665 46999999999977531110      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCce--eecccceeeeeceEEEEEeecccccccCC--
Q 013567          246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPE--VTSGGIALKFFASVRLEIRSTGKIKSVKG--  320 (440)
Q Consensus       246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~~~g--  320 (440)
                         ..+..++..+.+.|+.+|++++|+||+++|+++.+..-- ..|.  ...++.++.+.+++.+++.|....+....  
T Consensus       321 ---~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~  397 (472)
T PRK08506        321 ---KDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKE  397 (472)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccccccccccc
Confidence               123445788999999999999999999999988664211 1232  24578889999999999998754421000  


Q ss_pred             -C-c--ccc-------------eEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          321 -D-E--DVG-------------VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       321 -~-~--~~G-------------~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                       + +  ..|             ....+.|.|||..|++   .+.+.|.....+..
T Consensus       398 ~~~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G---~v~l~f~~~~~~f~  449 (472)
T PRK08506        398 KEKKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTG---TVKLRFQKEFTRFV  449 (472)
T ss_pred             cccccccccccccccccccccccceEEEEecCCCCCCc---eEEEEEecCCcccc
Confidence             0 0  012             1367899999987754   56666666665443

>PRK07004 replicative DNA helicase; Provisional

Probab=99.92  E-value=3.1e-24  Score=224.69  Aligned_cols=297  Identities=18%  Similarity=0.166  Sum_probs=207.6

Q ss_pred             ccccccccchhhHHHHhhcccccccccccccccccCCCC---ccHHHHHHHHHHHHHHHHhhcCC--CCeee--------
Q 013567           47 SRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGD---SRFLDRQRALDAAMNDINSSFGK--GSVTR--------  113 (440)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~~~--~~~~~--------  113 (440)
                      ....++.+|...||.+|++++.+|+++..+........+   .+..+..+.++..+..|...-..  .....        
T Consensus        98 ~~~~~s~ani~~Ya~iV~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~  177 (460)
T PRK07004         98 AQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGTQGFLEIGPLLTQV  177 (460)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHcccCcCcCcchhHHHHHHHH
Confidence            334667789999999999999999998888877765221   24455555555555555432111  11111        


Q ss_pred             ---ccC----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCCh
Q 013567          114 ---LGS----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDP  185 (440)
Q Consensus       114 ---~~~----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~  185 (440)
                         +.+    .......++|||++.||.++ ||+++|+++.|.|+||+|||+||++++.+++ +.+.+|+||+.||+..+
T Consensus       178 ~~~i~~~~~~~~~~~~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~q  256 (460)
T PRK07004        178 VERIDTLYHTANPSDVTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ  256 (460)
T ss_pred             HHHHHHHHhccccCCCCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHH
Confidence               110    01234568999999999998 7999999999999999999999999998876 46889999999998877


Q ss_pred             hhhhhh----cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEeccccc
Q 013567          186 SYSKAL----GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSAL  233 (440)
Q Consensus       186 ~~a~~l----Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l  233 (440)
                      ...+.+    +++.                         .++++.+  ..+..++...++++.+.. ++++||||+++.+
T Consensus       257 l~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~  336 (460)
T PRK07004        257 LAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLM  336 (460)
T ss_pred             HHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhc
Confidence            533322    1211                         1234433  246778888888887654 5899999999988


Q ss_pred             CCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEe
Q 013567          234 TPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIR  310 (440)
Q Consensus       234 ~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~  310 (440)
                      .+...     +    ..+..+++.+.+.|+.+|++++|+||+++|+++.+..-.+ .|.  ...++..+...++..+++.
T Consensus       337 ~~~~~-----~----~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~  407 (460)
T PRK07004        337 SGSSQ-----G----ENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIY  407 (460)
T ss_pred             cCCCC-----C----CcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEec
Confidence            63110     1    1244568999999999999999999999999886643221 232  2457888999999999999


Q ss_pred             ecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567          311 STGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC  359 (440)
Q Consensus       311 r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~  359 (440)
                      |.+....  ..+..| ...+.|.|||..|++   .+.+.|.....+..+
T Consensus       408 R~~~y~~--~~~~~g-~~e~ivaKnR~G~~G---~v~l~f~~~~~~F~~  450 (460)
T PRK07004        408 RDEVYNP--DSPDKG-TAEIIIGKQRNGPIG---PVRLTFLGQYTKFDN  450 (460)
T ss_pred             cccccCC--CcCCCC-ceEEEEEccCCCCCc---eEEEEEecCCCcccC
Confidence            8654431  111112 368899999988775   566777666655443

>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]

Probab=99.92  E-value=3.8e-24  Score=218.87  Aligned_cols=297  Identities=15%  Similarity=0.115  Sum_probs=215.9

Q ss_pred             cccccccccchhhHHHHhhcccccccccccccccccCCCC---ccHHHHHHHHHHHHHHHHhhcCCCCeeeccCC-----
Q 013567           46 SSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGD---SRFLDRQRALDAAMNDINSSFGKGSVTRLGSA-----  117 (440)
Q Consensus        46 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~-----  117 (440)
                      .+++.+.++|...||.+|++++..|+++..++++.....+   ...++..+..+.-+.+|...........+++.     
T Consensus        85 L~~~~ps~~Ni~~y~~iv~e~s~~R~Li~~~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~~~~~~~~~~~~~l~~~~  164 (435)
T COG0305          85 LIDRTPSAANIDYYAKIVKEKALLRELIEAGNEIVNLGYESEKDLDEEVLDAAEKKIFDVAERKNSEDFVHIGDLLKETM  164 (435)
T ss_pred             HHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            4677889999999999999999999999999988877222   12234445555555555444333222111111     


Q ss_pred             -------CCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhh
Q 013567          118 -------GGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSK  189 (440)
Q Consensus       118 -------~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~  189 (440)
                             ....+.++|||++.||.++ +|+++|+++.+.|+||+|||+||++++.+++. ...++++|+.||+.++...+
T Consensus       165 ~~i~~~~~~~~~~Gi~tgf~~LD~~t-~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R  243 (435)
T COG0305         165 DEIEARFENGGLIGVPTGFTDLDEIT-SGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMR  243 (435)
T ss_pred             HHHHHHhccCCCcccccCchhhHHHh-cCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Confidence                   1112679999999999999 78999999999999999999999999999986 45568999999998876433


Q ss_pred             hh----cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchh
Q 013567          190 AL----GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE  238 (440)
Q Consensus       190 ~l----Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~e  238 (440)
                      .+    +++.                         ..+++.+  ..+..++...++++.+++++++++||+++.+.... 
T Consensus       244 ~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~-  322 (435)
T COG0305         244 LLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGK-  322 (435)
T ss_pred             hhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccc-
Confidence            32    2221                         1233422  34678899999999999999999999999987411 


Q ss_pred             hcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCC---ceeecccceeeeeceEEEEEeecccc
Q 013567          239 IEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN---PEVTSGGIALKFFASVRLEIRSTGKI  315 (440)
Q Consensus       239 l~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~---~~~~~gG~~l~~~a~~rl~l~r~~~i  315 (440)
                              ....+.++++.+.+.|+.+|++++++||.++|+++.+.+--+.   ....-...++..-++..+++.|.+..
T Consensus       323 --------~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~y  394 (435)
T COG0305         323 --------KSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAY  394 (435)
T ss_pred             --------cchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhhc
Confidence                    1135667889999999999999999999999999877653221   12344667888999999999987655


Q ss_pred             cccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          316 KSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       316 k~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                      .+...+   +....+.|.|||-.|.+   .+.+.|........
T Consensus       395 ~~~~~~---~g~aeiIi~K~RnGp~G---tV~l~f~~~~~~F~  431 (435)
T COG0305         395 LKDTPD---RGEAEVIVAKNRNGPTG---TVKLAFDPQFTKFK  431 (435)
T ss_pred             cCCCCC---CceEEEEEEeccCCCCc---eEEEEEeccccccc
Confidence            432222   24568899999977654   55577777765543

>PRK06904 replicative DNA helicase; Validated

Probab=99.92  E-value=5e-24  Score=223.50  Aligned_cols=295  Identities=16%  Similarity=0.128  Sum_probs=206.5

Q ss_pred             ccccccchhhHHHHhhcccccccccccccccccCC--CC-ccHHHHHHHHHHHHHHHHhhcCC--CCeee----------
Q 013567           49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDS--GD-SRFLDRQRALDAAMNDINSSFGK--GSVTR----------  113 (440)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~i~~~~~~--~~~~~----------  113 (440)
                      ..++++|...||.+|++++.+|+++..+.......  .+ .+.++..+.++..+..+......  .....          
T Consensus       108 ~~~s~~ni~~Ya~iVke~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  187 (472)
T PRK06904        108 NTPSAANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERDVFSIAEKRTTANEGPQNVINLLENTID  187 (472)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHhhcccccCCceeHHHHHHHHHH
Confidence            35667899999999999999999999888887552  22 35556666666666666543221  11110          


Q ss_pred             -ccC----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhh
Q 013567          114 -LGS----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSY  187 (440)
Q Consensus       114 -~~~----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~  187 (440)
                       +.+    .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++. .+.+|+||+.||+..+..
T Consensus       188 ~i~~~~~~~~~~~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~  266 (472)
T PRK06904        188 KIENLAATPTNNGVTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM  266 (472)
T ss_pred             HHHHHHhhccCCCCCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence             000    11234678999999999998 89999999999999999999999999998875 577899999999877642


Q ss_pred             hhhh----ccc---------------------------ccceeecC--CCCHHHHHHHHHHHHhc-CCcceEEEeccccc
Q 013567          188 SKAL----GVD---------------------------VENLIVCQ--PDNGEMALEIADRMCRS-GAIDLICVDSVSAL  233 (440)
Q Consensus       188 a~~l----Gv~---------------------------~~~l~i~~--~~~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l  233 (440)
                      .+.+    +++                           ..++++.+  ..+..++...++++.+. +++++||||+++.+
T Consensus       267 ~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli  346 (472)
T PRK06904        267 MRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLM  346 (472)
T ss_pred             HHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhc
Confidence            2211    111                           01245543  24678888888887665 46999999999987


Q ss_pred             CCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCcee--ecccceeeeeceEEEEEe
Q 013567          234 TPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPEV--TSGGIALKFFASVRLEIR  310 (440)
Q Consensus       234 ~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~~--~~gG~~l~~~a~~rl~l~  310 (440)
                      .... ..        ..+..+++.+.+.|+.+|++++|+||+++|+.+.+..-- ..|..  ..++..+...+++.+++.
T Consensus       347 ~~~~-~~--------~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~  417 (472)
T PRK06904        347 RAPG-FE--------DNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIY  417 (472)
T ss_pred             CCCC-CC--------CcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEe
Confidence            5311 11        123446789999999999999999999999987664321 12322  457889999999999999


Q ss_pred             ecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          311 STGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       311 r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                      |.+.... +.+... ....+.|.|||..|.+   .+.+.|.....+..
T Consensus       418 R~~~y~~-~~~~~~-~~~elivaKnR~G~~G---~v~l~f~~~~~~f~  460 (472)
T PRK06904        418 RDEVYNE-TTEDNK-GVAEIIIGKQRNGPIG---RVRLAFQGQYSRFD  460 (472)
T ss_pred             ccccccC-ccccCC-CceEEEEeccCCCCCc---eEEEEEccCCCCcc
Confidence            8654431 111111 2368899999987764   56666666655443

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=99.92  E-value=7.6e-24  Score=206.46  Aligned_cols=216  Identities=19%  Similarity=0.268  Sum_probs=156.8

Q ss_pred             ccccCcHHHHHHh--------------cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---
Q 013567          124 TFPSGCLTLDLAL--------------GGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---  186 (440)
Q Consensus       124 ~i~TGi~~LD~~L--------------gGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---  186 (440)
                      ++|||+++||++|              +||+|+|.+++|+|+||+|||+||+|++.+.++.+.+++|+++|++.+..   
T Consensus         3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~   82 (259)
T TIGR03878         3 GVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTS   82 (259)
T ss_pred             CccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHH
Confidence            6899999999999              59999999999999999999999999999988889999999999766432   


Q ss_pred             ---hhhhhccccc----ceeecCCCC-------HHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHH
Q 013567          187 ---YSKALGVDVE----NLIVCQPDN-------GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQA  252 (440)
Q Consensus       187 ---~a~~lGv~~~----~l~i~~~~~-------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~a  252 (440)
                         .++.+|++++    ++++.++.+       .++++..+...+++.+++++||||++++.....              
T Consensus        83 l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~--------------  148 (259)
T TIGR03878        83 LKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKE--------------  148 (259)
T ss_pred             HHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccch--------------
Confidence               3456787753    566665543       455666677777778999999999998763100              


Q ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCC---cccc-eEE
Q 013567          253 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGD---EDVG-VRV  328 (440)
Q Consensus       253 r~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~---~~~G-~~~  328 (440)
                      ...+++++.|..++++.++|+|+++|........   ...+.++..+.|.++..+.++..........+   +..| ..+
T Consensus       149 ~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~~---~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R  225 (259)
T TIGR03878       149 MMAREIVRQLFNFMKKWYQTALFVSQKRSGHEEL---SAEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGEIVR  225 (259)
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEEeccccCcccc---cccccCCcceeEeeccEEEEeeeeccchhhhhhccccccceEE
Confidence            1135667788899999999999999976522110   11355666789999999999853211100000   0113 345


Q ss_pred             EEEEeeccCCCC-CceEEEEEEeCCCcccc
Q 013567          329 RVRVQKSKVSRP-YKQAEFEIIFGEGVSKL  357 (440)
Q Consensus       329 ~v~v~Knr~~~p-~~~~~~~i~~~~Gi~~~  357 (440)
                      .+.|.|+|-.+. ....+|+|. ++||...
T Consensus       226 ~l~I~KmRg~~h~~~~~~~~It-~~Gi~~i  254 (259)
T TIGR03878       226 LFRIDGCRMCGHDTKTHVLEID-ETGLVKI  254 (259)
T ss_pred             EEEEEEccCCCCCCceeEEEEc-CCceEEe
Confidence            799999986543 456789998 8887543

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=99.92  E-value=1.1e-23  Score=202.61  Aligned_cols=201  Identities=19%  Similarity=0.287  Sum_probs=152.5

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc-----
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE-----  196 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~-----  196 (440)
                      +++||+++||++|+||+|+|.++.|+|+||+|||+||+|++.+.++.+.+++||++|++.++.  .++.+|++.+     
T Consensus         2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~   81 (237)
T TIGR03877         2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEE   81 (237)
T ss_pred             ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhc
Confidence            689999999999999999999999999999999999999999988889999999999987764  4556787653     


Q ss_pred             -ceeecC-------------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHH
Q 013567          197 -NLIVCQ-------------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS  256 (440)
Q Consensus       197 -~l~i~~-------------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~  256 (440)
                       ++.+.+                   +.+.+++...+.+.+...+.+++||||++.++. ..    .      .   ...
T Consensus        82 g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~-~~----~------~---~~r  147 (237)
T TIGR03877        82 GKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYI-TK----P------A---MAR  147 (237)
T ss_pred             CCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhc-CC----h------H---HHH
Confidence             233322                   345567777777777777899999999998763 10    0      0   123


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeecc
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSK  336 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr  336 (440)
                      +.+..|.++++++|+|+|+++|....-.        ..++..+.|.++..+.++...     .++.   .++++.|.|.|
T Consensus       148 ~~l~~l~~~lk~~~~t~llt~~~~~~~~--------~~~~~~~~~~~D~vI~L~~~~-----~~~~---~~R~l~i~K~R  211 (237)
T TIGR03877       148 SIVMQLKRVLSGLGCTSIFVSQVSVGER--------GFGGPGVEHAVDGIIRLDLDE-----IDGE---LKRSLIVWKMR  211 (237)
T ss_pred             HHHHHHHHHHHhCCCEEEEEECcccccc--------cccccceEEEEeEEEEEEEEe-----eCCc---eEEEEEEEECC
Confidence            5677888889999999999999864211        112234688899999987632     1111   34679999999


Q ss_pred             CCCCC-ceEEEEEEeCCCcc
Q 013567          337 VSRPY-KQAEFEIIFGEGVS  355 (440)
Q Consensus       337 ~~~p~-~~~~~~i~~~~Gi~  355 (440)
                      -.+.. ....|+|. ++||.
T Consensus       212 g~~~~~~~~~~~It-~~Gi~  230 (237)
T TIGR03877       212 GTKHSMRRHPFEIT-DKGII  230 (237)
T ss_pred             CCCCCCceEEEEEc-CCCEE
Confidence            76665 45789997 88885

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PHA02542 41 41 helicase; Provisional

Probab=99.92  E-value=1.2e-23  Score=220.21  Aligned_cols=281  Identities=13%  Similarity=0.069  Sum_probs=197.5

Q ss_pred             chhhHHHHhhcccccccccccccccccC--CCCccHHH-----------------------HHHHHHHHHHHHHhhcCCC
Q 013567           55 SSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLD-----------------------RQRALDAAMNDINSSFGKG  109 (440)
Q Consensus        55 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------------~~~~l~~~~~~i~~~~~~~  109 (440)
                      |...||.+|++++..|.++..+..+...  +.+.+..+                       ..+.+.++++.+++.... 
T Consensus        86 n~~~ya~~v~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~-  164 (473)
T PHA02542         86 DLDWLVKETEKWCQDRAMYNALSKAIEIQDNADKPLEKRNKKLPDVGAIPDIMQEALAISFDSSVGHDYFEDYEERYDS-  164 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHhhhhccchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-
Confidence            8899999999999999998887766643  11111111                       011222233344432110 


Q ss_pred             CeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhh-
Q 013567          110 SVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS-  188 (440)
Q Consensus       110 ~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a-  188 (440)
                              ......++|||++.||.+++||+++|+++.|.|+||+|||||+++++.++++.+.+|+||+.|++..+... 
T Consensus       165 --------~~~~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~R  236 (473)
T PHA02542        165 --------YQSKANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKR  236 (473)
T ss_pred             --------ccCCCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHH
Confidence                    01225689999999999998999999999999999999999999999999888889999999998876421 


Q ss_pred             ---hhhccccc-----------------------ceeecC----CCCHHHHHHHHHHHHhcCC--cceEEEecccccCCc
Q 013567          189 ---KALGVDVE-----------------------NLIVCQ----PDNGEMALEIADRMCRSGA--IDLICVDSVSALTPR  236 (440)
Q Consensus       189 ---~~lGv~~~-----------------------~l~i~~----~~~~ee~l~~i~~l~~~~~--~~lvVIDsl~~l~~~  236 (440)
                         ...+++.+                       ++++..    ..+..++...++++....+  +++||||+++.+.+ 
T Consensus       237 l~a~~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~-  315 (473)
T PHA02542        237 IDANLLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICAS-  315 (473)
T ss_pred             HHHHHcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccC-
Confidence               22233321                       233332    2356788888888765444  89999999998863 


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCce--eecccceeeeeceEEEEEeeccc
Q 013567          237 AEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPE--VTSGGIALKFFASVRLEIRSTGK  314 (440)
Q Consensus       237 ~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~--~~~gG~~l~~~a~~rl~l~r~~~  314 (440)
                      ....+. +    ..+.++++.+.+.|+.+|++++|+||+++|+++.+..- .+|.  ...+..++.+.+++.+++.|.+.
T Consensus       316 ~~~~~~-~----~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r-~dP~lsDLreSG~IEqdAD~vl~l~r~~~  389 (473)
T PHA02542        316 SRLRVS-S----ENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDS-SDVDMSDTAESAGLPATADFMLAVIETEE  389 (473)
T ss_pred             CcccCC-C----CChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCcccccc-CCCcchhcccccchHhhcCEEEEEecCcc
Confidence            111110 0    13445689999999999999999999999999876432 1232  34578889999999999987542


Q ss_pred             ccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          315 IKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       315 ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                      ..    +.   ....+.|.|||..|......+.+.|......+.
T Consensus       390 ~~----~~---~~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F~  426 (473)
T PHA02542        390 LA----QM---GQQLVKQLKSRYGDKNKFNKFLMGVDKGNQRWY  426 (473)
T ss_pred             cc----cC---CeEEEEEecCCCCCCCCceEEEEEEECCcCccc
Confidence            21    11   346889999998887655567787777665444

>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.91  E-value=8.1e-25  Score=205.46  Aligned_cols=218  Identities=28%  Similarity=0.459  Sum_probs=176.9

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChh----hhhh
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPS----YSKA  190 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~----~a~~  190 (440)
                      .+..|+||+..||.+|||||+.-.+++|+|.+|+|||.++.+++..++-      .+++++|||+|.++.+.    ++.+
T Consensus        93 ~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~  172 (335)
T KOG1434|consen   93 TVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAER  172 (335)
T ss_pred             ccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHH
Confidence            4668999999999999999999999999999999999999999887774      46889999999999886    4666


Q ss_pred             hcccc----cceeecCCCCHHHHHHHHHH---HHhc-CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567          191 LGVDV----ENLIVCQPDNGEMALEIADR---MCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM  262 (440)
Q Consensus       191 lGv~~----~~l~i~~~~~~ee~l~~i~~---l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L  262 (440)
                      +++++    +|+++++..+.++.++.+..   .+.+ +..++++|||+++++ +.+++|. |+  ...+.|.+.+.+.+|
T Consensus       173 ~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-ge--LseRqqkLn~ml~kl  248 (335)
T KOG1434|consen  173 FKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-GE--LSERQQKLNQMLQKL  248 (335)
T ss_pred             hCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eeccccc-cc--HHHHHHHHHHHHHHH
Confidence            77765    58888888888777665544   3444 588999999999999 6777753 22  224556789999999


Q ss_pred             HHHHHhcCCEEEEEecccccccc--cc-CCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR  339 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~  339 (440)
                      ..++++++++|+++||+..+++.  +| .++-.|+||..|.|.+..|+.+++.      .|+     .+..++.|++- -
T Consensus       249 ~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkg------rg~-----eR~Akl~dSP~-m  316 (335)
T KOG1434|consen  249 NKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKG------RGD-----ERVAKLYDSPS-M  316 (335)
T ss_pred             HHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcC------Ccc-----eeeeecccCCC-C
Confidence            99999999999999999998874  23 3456789999999999999999985      234     35778889854 4


Q ss_pred             CCceEEEEEEeCCCcc
Q 013567          340 PYKQAEFEIIFGEGVS  355 (440)
Q Consensus       340 p~~~~~~~i~~~~Gi~  355 (440)
                      |...+.|.|. ..||.
T Consensus       317 pe~e~~y~It-~~Gi~  331 (335)
T KOG1434|consen  317 PEAEASYVIT-PGGIR  331 (335)
T ss_pred             CcceEEEEEc-CCccc
Confidence            5568888887 77874

>PRK04328 hypothetical protein; Provisional

Probab=99.91  E-value=3.8e-23  Score=200.39  Aligned_cols=205  Identities=20%  Similarity=0.297  Sum_probs=153.9

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc---
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE---  196 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~---  196 (440)
                      +++++||+++||++|+||+|+|.++.|.|+||+|||+||++++.+.++.+.+++|+++|++++..  .++.+|++++   
T Consensus         2 ~~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~   81 (249)
T PRK04328          2 VKRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE   81 (249)
T ss_pred             CceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHh
Confidence            35799999999999999999999999999999999999999999998899999999999987764  4667888653   


Q ss_pred             ---ceeecC-------------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHH
Q 013567          197 ---NLIVCQ-------------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARL  254 (440)
Q Consensus       197 ---~l~i~~-------------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~  254 (440)
                         ++.+.+                   +.+.++++..+.+.+++.+++++||||++.+.. ..    .      .   .
T Consensus        82 ~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~-~~----~------~---~  147 (249)
T PRK04328         82 EEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYL-TK----P------A---M  147 (249)
T ss_pred             hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhc-CC----h------H---H
Confidence               233322                   234556667777777777899999999998753 11    0      0   1


Q ss_pred             HHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEee
Q 013567          255 MSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQK  334 (440)
Q Consensus       255 l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~K  334 (440)
                      .++.+..|.+.+++.|+|+|+++|....        +.+.++..+.|.++..+.++...     .+.   ..++.+.|.|
T Consensus       148 ~r~~~~~l~~~lk~~g~t~llt~e~~~~--------~~~~~~~~~~~~~D~vI~L~~~~-----~~~---~~~R~l~I~K  211 (249)
T PRK04328        148 ARSIVMQLKRVLSGLGCTAIFVSQVSVG--------ERGFGGPGVEHAVDGIIRLDLDE-----IDG---ELKRSLIVWK  211 (249)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECcccc--------ccccCCCCcEEEEEEEEEEEEEe-----cCC---cEEEEEEEEE
Confidence            2355777888889999999999998641        11223445678899999887642     111   1346789999


Q ss_pred             ccCCCCC-ceEEEEEEeCCCcccc
Q 013567          335 SKVSRPY-KQAEFEIIFGEGVSKL  357 (440)
Q Consensus       335 nr~~~p~-~~~~~~i~~~~Gi~~~  357 (440)
                      .|-.+.. ...+|+|. ++|+...
T Consensus       212 ~Rg~~~~~~~~~~~It-~~Gi~v~  234 (249)
T PRK04328        212 MRGTKHSMRRHPFEIT-DKGIVVY  234 (249)
T ss_pred             ccCCCCCCceEEEEEc-CCCEEEE
Confidence            9866544 45789998 7898643

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=99.89  E-value=7.1e-22  Score=188.58  Aligned_cols=202  Identities=20%  Similarity=0.256  Sum_probs=148.5

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc----
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN----  197 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~----  197 (440)
                      +++||++.||++|+||+++|+++.|.|+||+|||||+++++.+.++++.+++|++.|++.++.  .++.+|+++++    
T Consensus         1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~   80 (229)
T TIGR03881         1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEE   80 (229)
T ss_pred             CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhc
Confidence            479999999999999999999999999999999999999998888889999999999887664  46678887653    


Q ss_pred             --eeecC-------------CCCHHHHHHHHHHHHhcC--CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHH
Q 013567          198 --LIVCQ-------------PDNGEMALEIADRMCRSG--AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALR  260 (440)
Q Consensus       198 --l~i~~-------------~~~~ee~l~~i~~l~~~~--~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~  260 (440)
                        +.+.+             ..+.+++...+++.++..  ++++++|||+..+.. .+    +      ..   .++.+.
T Consensus        81 ~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~~----~------~~---~r~~~~  146 (229)
T TIGR03881        81 GKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-DK----P------AM---ARKYSY  146 (229)
T ss_pred             CCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-cC----h------HH---HHHHHH
Confidence              33321             235677777777766553  467999999998863 11    1      11   235567


Q ss_pred             HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP  340 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p  340 (440)
                      .|+..+++.|+|+|+++|......        ...+..+.+.++..+.++...     .+..   .++.+.|.|.|-.+.
T Consensus       147 ~l~~~l~~~~~tvil~~~~~~~~~--------~~~~~~~~~l~D~vI~L~~~~-----~~~~---~~R~i~i~K~R~~~~  210 (229)
T TIGR03881       147 YLKRVLNRWNFTILLTSQYAITTS--------QAFGFGIEHVADGIIRFRKVV-----VDGE---LRRYLIVEKMRQTNH  210 (229)
T ss_pred             HHHHHHHhCCCEEEEEecccccCC--------CCcccceEEEEeEEEEEEEec-----cCCc---EEEEEEEEeccCCCC
Confidence            788889999999999999643111        111234678889888888642     1111   346799999986544


Q ss_pred             -CceEEEEEEeCCCcc
Q 013567          341 -YKQAEFEIIFGEGVS  355 (440)
Q Consensus       341 -~~~~~~~i~~~~Gi~  355 (440)
                       ....+|+|.-++||.
T Consensus       211 ~~~~~~~~I~~~~Gi~  226 (229)
T TIGR03881       211 DKRAWEIDIVPGKGLV  226 (229)
T ss_pred             CCceeEEEEcCCCceE
Confidence             356788887567885

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=99.89  E-value=2.1e-22  Score=192.04  Aligned_cols=201  Identities=30%  Similarity=0.396  Sum_probs=146.0

Q ss_pred             cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh--hhhhhcccccc----
Q 013567          125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS--YSKALGVDVEN----  197 (440)
Q Consensus       125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~--~a~~lGv~~~~----  197 (440)
                      ||||+++||++|+||+|+|.++.|.|+||+|||+||+|++.+.++. +.+|+|++.+++....  .++.+|++.+.    
T Consensus         1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~   80 (226)
T PF06745_consen    1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDS   80 (226)
T ss_dssp             E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHT
T ss_pred             CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhc
Confidence            6899999999999999999999999999999999999999999988 9999999999887664  46678887643    


Q ss_pred             --eeecC---------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567          198 --LIVCQ---------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA  266 (440)
Q Consensus       198 --l~i~~---------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la  266 (440)
                        +.+.+         +.+.+++...+...++..+++++||||++.+.. ....            ..+...++.|...+
T Consensus        81 g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~~~~------------~~~r~~l~~l~~~l  147 (226)
T PF06745_consen   81 GKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-YDDP------------EELRRFLRALIKFL  147 (226)
T ss_dssp             TSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-SSSG------------GGHHHHHHHHHHHH
T ss_pred             CCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-cCCH------------HHHHHHHHHHHHHH
Confidence              44432         345677888887777777789999999999831 1111            01456788888899


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeee-eceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC-CceE
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF-FASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP-YKQA  344 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~-~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p-~~~~  344 (440)
                      ++.++|+|++.|.....        .......+.+ .+|..+.++...     .++   ...+.+.|.|.|..+. ....
T Consensus       148 ~~~~~t~llt~~~~~~~--------~~~~~~~i~~~l~D~vI~L~~~~-----~~~---~~~R~l~I~K~Rg~~~~~~~~  211 (226)
T PF06745_consen  148 KSRGVTTLLTSEMPSGS--------EDDGTFGIEHYLADGVIELRYEE-----EGG---RIRRRLRIVKMRGSRHSTGIH  211 (226)
T ss_dssp             HHTTEEEEEEEEESSSS--------SSSSSTSHHHHHSSEEEEEEEEE-----ETT---EEEEEEEEEEETTS----BEE
T ss_pred             HHCCCEEEEEEccccCc--------ccccccchhhhcccEEEEEEEEe-----eCC---EEEEEEEEEEcCCCCCCCcEE
Confidence            99999999999964311        1223344555 788888887642     112   2456899999997665 4678


Q ss_pred             EEEEEeCCCcc
Q 013567          345 EFEIIFGEGVS  355 (440)
Q Consensus       345 ~~~i~~~~Gi~  355 (440)
                      +|+|. +.||.
T Consensus       212 ~f~I~-~~Gi~  221 (226)
T PF06745_consen  212 PFEIT-PGGIE  221 (226)
T ss_dssp             EEEEE-TTEEE
T ss_pred             EEEEE-CCeEE
Confidence            89998 58884

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]

Probab=99.89  E-value=6e-22  Score=188.61  Aligned_cols=226  Identities=28%  Similarity=0.350  Sum_probs=169.1

Q ss_pred             cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChhhhhhh-----
Q 013567          123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPSYSKAL-----  191 (440)
Q Consensus       123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~~a~~l-----  191 (440)
                      ..++||.+.||+.|+|||+-+.|++|+|++|+|||.|+||+....+-      .+++++||.+|..+...+...+     
T Consensus        82 ~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~  161 (351)
T KOG1564|consen   82 SKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLP  161 (351)
T ss_pred             hhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhcc
Confidence            57999999999999999999999999999999999999999998874      3689999999998876532111     


Q ss_pred             --------cccc----cceeecCCCCHHHHHHHHHH----HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH
Q 013567          192 --------GVDV----ENLIVCQPDNGEMALEIADR----MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM  255 (440)
Q Consensus       192 --------Gv~~----~~l~i~~~~~~ee~l~~i~~----l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l  255 (440)
                              +.-.    +++++....+++..++++..    +..+..+++|||||+++.+ +.+++....+.+  .+++.+
T Consensus       162 ~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~--~r~~~l  238 (351)
T KOG1564|consen  162 QRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLK--KRARHL  238 (351)
T ss_pred             cCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhh--hHHHHH
Confidence                    1111    23666656666666665544    3456779999999999998 677764333322  456778


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccC---------------CceeecccceeeeeceEEEEEeecccccccCC
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG---------------NPEVTSGGIALKFFASVRLEIRSTGKIKSVKG  320 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~---------------~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g  320 (440)
                      .+.-.+|..+|.+++++|+++||+.+.+..-++               ....|..|..|.+..++|+.+.|.  .|..+.
T Consensus       239 ~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~--~k~~~s  316 (351)
T KOG1564|consen  239 FRLAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRS--TKNCDS  316 (351)
T ss_pred             HHHHHHHHHHHHhcCccEEEeeccccccccccccCCccccchhhccccccccccccceeccccceeeeeeec--cccccc
Confidence            888888999999999999999999887432211               126788999999999999999883  231111


Q ss_pred             CcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          321 DEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       321 ~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      ...--..++++|+-+...||. .++|.|. .+||.
T Consensus       317 a~~~~~~R~l~VvySp~~p~~-~~~~~It-~eGI~  349 (351)
T KOG1564|consen  317 AVSRSAKRTLRVVYSPYLPPS-SCEFMIT-AEGIC  349 (351)
T ss_pred             hhhcccceEEEEEecCCCCCc-ceEEEEe-cceEe
Confidence            111113468999999888774 7888887 77873

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=99.88  E-value=2.2e-21  Score=188.85  Aligned_cols=220  Identities=18%  Similarity=0.175  Sum_probs=155.1

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhh----hhcccc---
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSK----ALGVDV---  195 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~----~lGv~~---  195 (440)
                      +||||++.||+++ ||+.+|+++.|.|+||+|||+|+++++.+++.. +.+|+||+.|++.++...+    ..+++.   
T Consensus         1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i   79 (259)
T PF03796_consen    1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKI   79 (259)
T ss_dssp             SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHH
T ss_pred             CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhh
Confidence            5899999999999 799999999999999999999999999999986 5899999999987765322    223322   


Q ss_pred             ----------------------cceeecC--CCCHHHHHHHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHHH
Q 013567          196 ----------------------ENLIVCQ--PDNGEMALEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGL  250 (440)
Q Consensus       196 ----------------------~~l~i~~--~~~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~  250 (440)
                                            ..+++.+  ..+.+++.+.++.+... .++++|+||+++.+.+.....         .
T Consensus        80 ~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~---------~  150 (259)
T PF03796_consen   80 RSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSD---------N  150 (259)
T ss_dssp             HCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSS---------C
T ss_pred             hccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCC---------C
Confidence                                  1233322  34678888888888776 789999999999887532111         1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          251 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       251 ~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      ....+..+.+.|+.+|++++++||+++|+.+....-.+ .|.  ...++..+.+.++..+.+.+.+.......   ..+.
T Consensus       151 ~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~---~~~~  227 (259)
T PF03796_consen  151 RRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRD---DKGE  227 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSS---CTTE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccC---CCCe
Confidence            12346788999999999999999999999876543221 122  23578889999999999998754432111   1135


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC  359 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~  359 (440)
                      ..+.|.|||..+..   .+.+.|.....+..+
T Consensus       228 ~~l~v~KnR~G~~g---~v~~~f~~~~~~f~~  256 (259)
T PF03796_consen  228 AELIVAKNRNGPTG---TVPLRFNPETSRFTD  256 (259)
T ss_dssp             EEEEEEEESSS--E---EEEEEEETTTTEEEE
T ss_pred             EEEEEEecCCCCCc---eEEEEEECCCCeEee
Confidence            68999999976554   555666666655443

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=99.87  E-value=3.1e-21  Score=188.68  Aligned_cols=204  Identities=18%  Similarity=0.213  Sum_probs=148.6

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhh----hhcccc-
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSK----ALGVDV-  195 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~----~lGv~~-  195 (440)
                      .+++|||++.||.++ ||+++|+++.|.|+||+|||||+++++..++.. +.+++||+.|++.+....+    ..|+.. 
T Consensus        10 ~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~   88 (271)
T cd01122          10 NEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLH   88 (271)
T ss_pred             ccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcc
Confidence            458999999999999 899999999999999999999999999998877 8899999999976554211    113322 


Q ss_pred             -----------------------cceeecCC---CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567          196 -----------------------ENLIVCQP---DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG  249 (440)
Q Consensus       196 -----------------------~~l~i~~~---~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~  249 (440)
                                             .++++.+.   .+.+++.+.++.++...++++||||+++.+..... ..       .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~-------~  160 (271)
T cd01122          89 LPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-AS-------G  160 (271)
T ss_pred             cCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-Cc-------h
Confidence                                   12344332   25678888888888788999999999999864210 00       0


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc----CCce--eecccceeeeeceEEEEEeecccccccCCCcc
Q 013567          250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY----GNPE--VTSGGIALKFFASVRLEIRSTGKIKSVKGDED  323 (440)
Q Consensus       250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~----~~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~  323 (440)
                      ...+.+.++++.|+.+++++++||++++|+++..+.-.    +.+.  ...|+..+.+.++..+.+++...     .+..
T Consensus       161 ~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~-----~e~~  235 (271)
T cd01122         161 DERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ-----AELD  235 (271)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCc-----cccc
Confidence            12334677888999999999999999999986432100    1122  24577788999999999987532     1001


Q ss_pred             cceEEEEEEeeccCCC
Q 013567          324 VGVRVRVRVQKSKVSR  339 (440)
Q Consensus       324 ~G~~~~v~v~Knr~~~  339 (440)
                      -...+.++|.|+|...
T Consensus       236 ~~~~~~i~v~K~R~~~  251 (271)
T cd01122         236 ERNTTYLRILKNRFTG  251 (271)
T ss_pred             cCCcEEEEEEeeccCC
Confidence            1134689999999763

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.87  E-value=3.6e-21  Score=203.29  Aligned_cols=208  Identities=23%  Similarity=0.217  Sum_probs=159.0

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc--
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN--  197 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~--  197 (440)
                      ..+++||+++||++|+||+++|.++.|.||||+|||||++|++.+.++.+.+|+|+++|++.++.  +++++|++.++  
T Consensus       242 ~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~  321 (484)
T TIGR02655       242 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEME  321 (484)
T ss_pred             ccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHh
Confidence            45799999999999999999999999999999999999999999999999999999999998886  67889998764  


Q ss_pred             ----eeecC--C--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 013567          198 ----LIVCQ--P--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA  269 (440)
Q Consensus       198 ----l~i~~--~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~  269 (440)
                          +.+..  |  ...++.++.+.+.+...+++++||||++.+..  .+..        .+   .+..+..|...+++.
T Consensus       322 ~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~--~~~~--------~~---~r~~~~~l~~~lk~~  388 (484)
T TIGR02655       322 QQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR--GVSN--------NA---FRQFVIGVTGYAKQE  388 (484)
T ss_pred             hCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH--hcCH--------HH---HHHHHHHHHHHHhhC
Confidence                44433  2  24577777777777778899999999998863  1211        11   244567788899999


Q ss_pred             CCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC-CCceEEEEE
Q 013567          270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR-PYKQAEFEI  348 (440)
Q Consensus       270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~-p~~~~~~~i  348 (440)
                      ++|+++++......+.    ...+  ..-+.+.+|..+.++..+.     +.+   .++.+.|+|+|-.+ +....+|+|
T Consensus       389 ~it~~~t~~~~~~~~~----~~~~--~~~~s~l~D~ii~l~~~e~-----~g~---~~r~i~V~K~R~~~~~~~~~~~~I  454 (484)
T TIGR02655       389 EITGFFTNTSDQFMGS----HSIT--DSHISTITDTILMLQYVEI-----RGE---MSRAINVFKMRGSWHDKGIREFMI  454 (484)
T ss_pred             CCeEEEeecccccccC----CccC--CCCeeEeeeEEEEEEEEec-----CCE---EEEEEEEEEccCCCCCCceEEEEE
Confidence            9999999876542221    1111  1235788999999987431     111   34568999998654 346788999


Q ss_pred             EeCCCcccc
Q 013567          349 IFGEGVSKL  357 (440)
Q Consensus       349 ~~~~Gi~~~  357 (440)
                      . ++||...
T Consensus       455 t-~~Gi~v~  462 (484)
T TIGR02655       455 S-DKGPEIK  462 (484)
T ss_pred             c-CCcEEEc
Confidence            8 8999643

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.86  E-value=7.8e-21  Score=182.26  Aligned_cols=207  Identities=18%  Similarity=0.234  Sum_probs=145.6

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL  198 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l  198 (440)
                      ..++++||++.||.+|+||+|+|.++.|+|+||+|||+|+.+++.+.++.+.+|+|++.|++++..  .+..+|++....
T Consensus         3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~   82 (234)
T PRK06067          3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDF   82 (234)
T ss_pred             CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHH
Confidence            456899999999999999999999999999999999999999999988889999999999887664  355778776532


Q ss_pred             ------eec---------CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHH
Q 013567          199 ------IVC---------QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS  263 (440)
Q Consensus       199 ------~i~---------~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~  263 (440)
                            .+.         .....++.+..+...+.+.++++++||+++.+...  ..           ...+..++..+.
T Consensus        83 ~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~--~~-----------~~~~~~~l~~l~  149 (234)
T PRK06067         83 FLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY--AE-----------EDDILNFLTEAK  149 (234)
T ss_pred             HhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc--CC-----------HHHHHHHHHHHH
Confidence                  121         12234667777777777778999999999976421  00           011344555444


Q ss_pred             HHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC--
Q 013567          264 GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY--  341 (440)
Q Consensus       264 ~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~--  341 (440)
                      .+ ++.++|+++++|.........         ..+.+.++..+.++...     .+.+   ..+++.|.|.|-.+..  
T Consensus       150 ~l-~~~g~tvllt~~~~~~~~~~~---------~~~~~l~DgvI~L~~~~-----~~~~---~~r~l~i~K~Rg~~~~~~  211 (234)
T PRK06067        150 NL-VDLGKTILITLHPYAFSEELL---------SRIRSICDVYLKLRAEQ-----IGGR---YVKVLEVVKLRGARKTTG  211 (234)
T ss_pred             HH-HhCCCEEEEEecCCcCCHHHH---------HHHHhheEEEEEEEeec-----cCCE---EeEEEEEEhhcCCCCCCC
Confidence            33 456899999998754221111         12456677777777531     1111   3457999999866544  


Q ss_pred             ceEEEEEEeCCCcccch
Q 013567          342 KQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       342 ~~~~~~i~~~~Gi~~~~  358 (440)
                      ....|+|.-+.||....
T Consensus       212 ~~~~~~I~~~~Gi~v~~  228 (234)
T PRK06067        212 NIISFDVDPAFGIKIIP  228 (234)
T ss_pred             CEEEEEEcCCCCeEEEE
Confidence            45788887346886544

>PRK07773 replicative DNA helicase; Validated

Probab=99.86  E-value=3.6e-21  Score=216.12  Aligned_cols=227  Identities=15%  Similarity=0.132  Sum_probs=168.3

Q ss_pred             ccccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC--------
Q 013567           47 SRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS--------  116 (440)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~--------  116 (440)
                      +..+++++|...||++|++++.+|+++..+.++...  +...+.++..+.++..+.+|...-.......+.+        
T Consensus       107 ~~~~~s~~ni~~Ya~iV~e~s~~R~li~~~~~i~~~a~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  186 (886)
T PRK07773        107 ISTVPTAANADYYARIVAEKALLRRLIEAGTRIVQYGYAEGADVAEVVDRAQAEIYDVTDRRLSEDFVALEDLLQPTFDE  186 (886)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhccCcCCceeHHHHHHHHHHH
Confidence            345677899999999999999999999888887765  2334555666666666666654322222111111        


Q ss_pred             -----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhhh
Q 013567          117 -----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSKA  190 (440)
Q Consensus       117 -----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~~  190 (440)
                           .......++|||++.||.++ ||+++|+++.|.|+||+|||+||++++.+++. .+.+++||+.||+..+...+.
T Consensus       187 i~~~~~~~~~~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~  265 (886)
T PRK07773        187 IDAIASSGGLARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRL  265 (886)
T ss_pred             HHHHHhcCCCCCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence                 11224678999999999998 99999999999999999999999999999875 478999999999887753222


Q ss_pred             ----hcccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhh
Q 013567          191 ----LGVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEI  239 (440)
Q Consensus       191 ----lGv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el  239 (440)
                          .+++.                         .++++.+  ..+.+++...++++.+..++++|||||++.+..... 
T Consensus       266 ~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~-  344 (886)
T PRK07773        266 LSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKK-  344 (886)
T ss_pred             HHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCC-
Confidence                22221                         1233322  246788888888888888899999999998853110 


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          240 EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       240 ~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                          .    ..+.+++.++.+.|+.+|++++++||+++|+++.+
T Consensus       345 ----~----~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~  380 (886)
T PRK07773        345 ----Y----ENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGV  380 (886)
T ss_pred             ----C----CCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcch
Confidence                0    12345689999999999999999999999998865

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=99.85  E-value=5.7e-20  Score=195.52  Aligned_cols=210  Identities=21%  Similarity=0.275  Sum_probs=150.6

Q ss_pred             CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh--hhhhhccccc
Q 013567          120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS--YSKALGVDVE  196 (440)
Q Consensus       120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~--~a~~lGv~~~  196 (440)
                      +.++++|||+++||++|+||+|+|+++.|+|+||+|||+||+|++.+.+.. +.+|+||++|++.++.  .+..+|++.+
T Consensus         8 ~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~   87 (509)
T PRK09302          8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQ   87 (509)
T ss_pred             CCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHH
Confidence            367799999999999999999999999999999999999999999988876 8999999999988875  4667888764


Q ss_pred             c------eeecCC------------CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567          197 N------LIVCQP------------DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA  258 (440)
Q Consensus       197 ~------l~i~~~------------~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~  258 (440)
                      +      +.+.+.            ...+.++..+...+...+++.+||||++.+..  .+..          ...++..
T Consensus        88 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~--~~d~----------~~~~r~~  155 (509)
T PRK09302         88 KLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS--GFSN----------EAVVRRE  155 (509)
T ss_pred             HHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh--hccC----------HHHHHHH
Confidence            3      333211            13456677777777778899999999998753  1111          1123556


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS  338 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~  338 (440)
                      +..|...+++.++|+|+++|.....+.      ...- ....+.++..+.++...     .++   ...+.+.|.|.|-.
T Consensus       156 l~~L~~~Lk~~g~TvLlt~~~~~~~~~------~~~~-~~~~~laDgVI~L~~~~-----~~~---~~~R~l~I~K~Rg~  220 (509)
T PRK09302        156 LRRLFAWLKQKGVTAVITGERGDEYGP------LTRY-GVEEFVSDCVIILRNRL-----EGE---KRTRTLRILKYRGT  220 (509)
T ss_pred             HHHHHHHHHhCCCEEEEEECCccCcCC------cccc-CceEEEeeEEEEEeEEc-----cCC---eEEEEEEEEECCCC
Confidence            677777888999999999997642221      0000 12356778888776432     111   12468899999855


Q ss_pred             CCC-ceEEEEEEeCCCcccc
Q 013567          339 RPY-KQAEFEIIFGEGVSKL  357 (440)
Q Consensus       339 ~p~-~~~~~~i~~~~Gi~~~  357 (440)
                      +.. ....|+|. +.||...
T Consensus       221 ~~~~~~~~f~I~-~~Gi~v~  239 (509)
T PRK09302        221 THGKNEYPFTIT-EDGISVL  239 (509)
T ss_pred             CcCCccEEEEEC-CCcEEEE
Confidence            543 34677875 6777643

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.84  E-value=4.6e-20  Score=194.83  Aligned_cols=205  Identities=16%  Similarity=0.210  Sum_probs=141.9

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh--hhhhhcccccc---
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS--YSKALGVDVEN---  197 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~--~a~~lGv~~~~---  197 (440)
                      ++|||+++||++|+||||+|+++.|.|+||+||||||+|++.+.++. +.+++||+.|++.++.  .++.+|+++++   
T Consensus         2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~   81 (484)
T TIGR02655         2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD   81 (484)
T ss_pred             cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh
Confidence            68999999999999999999999999999999999999999987665 8999999999887775  57788998753   


Q ss_pred             ---eeecCC------------CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567          198 ---LIVCQP------------DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM  262 (440)
Q Consensus       198 ---l~i~~~------------~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L  262 (440)
                         +.+.+.            ...+..+..+...+..+..+.++||++..+....+..            ...++.+..+
T Consensus        82 ~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~------------~~~r~~l~~L  149 (484)
T TIGR02655        82 EGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV------------SVVRREIFRL  149 (484)
T ss_pred             cCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch------------HHHHHHHHHH
Confidence               333322            2334555556566677889999999998875311100            0123344555


Q ss_pred             HHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC-
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY-  341 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~-  341 (440)
                      ...+++.++|+|+++|..+..+..    .  .. ....+.+|..+.++...     .+..   .++.+.|.|.|-.+.. 
T Consensus       150 i~~L~~~g~TvLLtsh~~~~~~~~----~--~~-~~~e~laDgVI~L~~~~-----~~~~---~~R~l~I~K~Rgs~~~~  214 (484)
T TIGR02655       150 VARLKQIGVTTVMTTERIEEYGPI----A--RY-GVEEFVSDNVVILRNVL-----EGER---RRRTLEILKLRGTSHMK  214 (484)
T ss_pred             HHHHHHCCCEEEEEecCccccccc----c--cC-CceeEeeeeEEEEEEEe-----cCCE---EEEEEEEEECCCCCcCC
Confidence            666678899999999987533210    0  00 11266778877777532     1111   2357889998854432 


Q ss_pred             ceEEEEEEeCCCccc
Q 013567          342 KQAEFEIIFGEGVSK  356 (440)
Q Consensus       342 ~~~~~~i~~~~Gi~~  356 (440)
                      ...+|+|. ++||..
T Consensus       215 ~~~~~~It-~~Gi~v  228 (484)
T TIGR02655       215 GEYPFTIT-DHGINI  228 (484)
T ss_pred             ceEEEEEc-CCcEEE
Confidence            34567776 556653

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=99.84  E-value=1e-19  Score=173.36  Aligned_cols=203  Identities=23%  Similarity=0.301  Sum_probs=141.3

Q ss_pred             CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc-----eee
Q 013567          128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN-----LIV  200 (440)
Q Consensus       128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~-----l~i  200 (440)
                      |+++||++|+||+|+|++++|.|+||+|||+||++++.+.++.+.+|+|++.|++.++.  .+..+|++.+.     +.+
T Consensus         1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~   80 (224)
T TIGR03880         1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYI   80 (224)
T ss_pred             CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEE
Confidence            78999999999999999999999999999999999999998889999999999987764  45667876643     444


Q ss_pred             cCCCC------HHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEE
Q 013567          201 CQPDN------GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLI  274 (440)
Q Consensus       201 ~~~~~------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI  274 (440)
                      .+..+      .+++...+..++++.+++++||||++.+.+  ...+   +       ....+.+..+...+++.|+|+|
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~--~~~~---~-------~~~r~~l~~l~~~lk~~~~tvl  148 (224)
T TIGR03880        81 VRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET--LFDD---D-------AERRTELFRFYSSLRETGVTTI  148 (224)
T ss_pred             EecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh--hcCC---H-------HHHHHHHHHHHHHHHhCCCEEE
Confidence            43222      234445566666777899999999998742  1111   0       0122334455555678899999


Q ss_pred             EEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC-CceEEEEEEeCCC
Q 013567          275 FLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP-YKQAEFEIIFGEG  353 (440)
Q Consensus       275 ~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p-~~~~~~~i~~~~G  353 (440)
                      +++|....-      +. ...-..+.+.++..+.++...     .++. ...++.+.|.|+|-.+. .....|+|. ++|
T Consensus       149 l~s~~~~~~------~~-~~~~~~~~~l~D~vI~L~~~~-----~~~~-~~~~r~l~v~K~Rg~~~~~~~~~~~i~-~~G  214 (224)
T TIGR03880       149 LTSEADKTN------VF-ASKYGLIEYLADGVIILKYVR-----NSDL-RDVRLAVEVVKMRRSKHSREIKPYEIT-DSG  214 (224)
T ss_pred             EEEcccCCC------CC-ccCCCceEEEEeEEEEEeeee-----cccC-cceEEEEEEEEccCCCCCCceEEEEEc-CCc
Confidence            999976411      00 000123678888888886421     1110 11345789999996644 466789997 888


Q ss_pred             ccc
Q 013567          354 VSK  356 (440)
Q Consensus       354 i~~  356 (440)
                      |..
T Consensus       215 i~v  217 (224)
T TIGR03880       215 ITV  217 (224)
T ss_pred             EEE
Confidence            853

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=99.84  E-value=8.2e-20  Score=175.47  Aligned_cols=204  Identities=17%  Similarity=0.193  Sum_probs=147.6

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhh----hhhccccc---------
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYS----KALGVDVE---------  196 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a----~~lGv~~~---------  196 (440)
                      +||.++ ||+++|+++.|.|+||+|||+||++++.+.+.. +.+++||+.|++......    ...|++..         
T Consensus         2 ~LD~~~-~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~   80 (242)
T cd00984           2 DLDNLT-GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSD   80 (242)
T ss_pred             chhhhh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCH
Confidence            689999 599999999999999999999999999999887 999999999998765422    22344321         


Q ss_pred             ----------------ceeec--CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567          197 ----------------NLIVC--QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA  258 (440)
Q Consensus       197 ----------------~l~i~--~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~  258 (440)
                                      ++++.  ...+.+++...++.+....++++||||+++.+....  ..  .     .....+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~~--~-----~~~~~~~~~  151 (242)
T cd00984          81 EDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KK--G-----NRQQEVAEI  151 (242)
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--CC--C-----CHHHHHHHH
Confidence                            22222  234678888888888877899999999999876321  00  0     123346788


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccccc-cCCc--eeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeec
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGVY-YGNP--EVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKS  335 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~~-~~~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Kn  335 (440)
                      ++.|+.+|+++|++||+++|..+....- ...+  ....|+..+.+.++..+.+.+.....   +++.--+...+.|.||
T Consensus       152 ~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~---~~~~~~~~~~l~v~Kn  228 (242)
T cd00984         152 SRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYN---KESESKGIAEIIVAKN  228 (242)
T ss_pred             HHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccc---cccCCCCceEEEEECC
Confidence            9999999999999999999998643221 1122  23457788899999999998864322   1111123579999999


Q ss_pred             cCCCCCceEEEEEEe
Q 013567          336 KVSRPYKQAEFEIIF  350 (440)
Q Consensus       336 r~~~p~~~~~~~i~~  350 (440)
                      |..+..   .+.+.|
T Consensus       229 R~G~~g---~~~l~~  240 (242)
T cd00984         229 RNGPTG---TVELRF  240 (242)
T ss_pred             CCCCCe---eEEEEe
Confidence            986543   444444

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=99.84  E-value=9e-20  Score=193.98  Aligned_cols=209  Identities=22%  Similarity=0.259  Sum_probs=157.6

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL  198 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l  198 (440)
                      ..++++||+++||.+|+||+|+|.++.|.|+||+|||+|+++++.+.++.+.+++||++|++.++.  .++.+|++.+.+
T Consensus       251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~  330 (509)
T PRK09302        251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKM  330 (509)
T ss_pred             ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHH
Confidence            345799999999999999999999999999999999999999999999999999999999987764  466788876432


Q ss_pred             ------eec--CC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 013567          199 ------IVC--QP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK  268 (440)
Q Consensus       199 ------~i~--~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~  268 (440)
                            .+.  .+  ...++.+..+...+.+.+++++||||++.+....  .           ...+.+.++.|...+++
T Consensus       331 ~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~--~-----------~~~~~~~l~~l~~~~k~  397 (509)
T PRK09302        331 EEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG--S-----------LNEFRQFVIRLTDYLKS  397 (509)
T ss_pred             hhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC--C-----------HHHHHHHHHHHHHHHHh
Confidence                  222  12  2456667777777777889999999999886311  0           11246678888999999


Q ss_pred             cCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC-CCceEEEE
Q 013567          269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR-PYKQAEFE  347 (440)
Q Consensus       269 ~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~-p~~~~~~~  347 (440)
                      +|+|+|+++|.....+.    ...+.  ..+.+.++..+.++...     .+..   .++.+.|+|.|..+ +....+|+
T Consensus       398 ~~~t~l~t~~~~~~~g~----~~~~~--~~~~~l~D~vI~L~~~~-----~~~~---~~R~l~I~K~Rg~~~~~~~~~f~  463 (509)
T PRK09302        398 EEITGLFTNLTPDFMGS----HSITE--SHISSLTDTWILLQYVE-----INGE---MNRALYVLKMRGSWHSNQIREFV  463 (509)
T ss_pred             CCCeEEEEeccccccCC----CCCCc--CceEEeeeEEEEEEEee-----cCCe---eEEEEEEEEcCCCCCCCceEEEE
Confidence            99999999987654321    11111  13678999999998642     1111   34679999999654 44678899


Q ss_pred             EEeCCCcccc
Q 013567          348 IIFGEGVSKL  357 (440)
Q Consensus       348 i~~~~Gi~~~  357 (440)
                      |. ++||...
T Consensus       464 It-~~Gi~v~  472 (509)
T PRK09302        464 IT-DKGIHIK  472 (509)
T ss_pred             Ee-CCcEEEc
Confidence            98 8999543

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=99.78  E-value=1.5e-17  Score=162.16  Aligned_cols=210  Identities=25%  Similarity=0.329  Sum_probs=149.4

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce-
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL-  198 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l-  198 (440)
                      ++++||||++||++++||+|+|++++|+|+||+|||+|++|++.+.++.+.+|+|++.++.....  .+.++|++++.+ 
T Consensus         2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~   81 (260)
T COG0467           2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYI   81 (260)
T ss_pred             CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999987775  456688887421 


Q ss_pred             -----eecC---------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567          199 -----IVCQ---------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA  258 (440)
Q Consensus       199 -----~i~~---------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~  258 (440)
                           .+.+               +...+.+...+.......+...+|+||+..+.....  .         ... ....
T Consensus        82 ~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~--~---------~~~-~r~~  149 (260)
T COG0467          82 EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLN--D---------PAL-VRRI  149 (260)
T ss_pred             hcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcC--c---------hHH-HHHH
Confidence                 1110               234455667777777777789999999996542111  0         011 2566


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS  338 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~  338 (440)
                      +..+.+.+++.++|.+++++.......    .     +....+.++..+.++...       .+..+.++.+.+.|.|..
T Consensus       150 ~~~l~~~~~~~~~t~~~~~~~~~~~~~----~-----~~~~~~~vdgvI~l~~~~-------~~~~~~r~~~~i~k~r~~  213 (260)
T COG0467         150 LLLLKRFLKKLGVTSLLTTEAPVEERG----E-----SGVEEYIVDGVIRLDLKE-------IEGGGDRRYLRILKMRGT  213 (260)
T ss_pred             HHHHHHHHHhCCCEEEEEecccccCCC----c-----cceEEEEEEEEEEEeeec-------ccCceEEEEEEEEecccc
Confidence            777888889999999999886432110    0     023344667777776532       111223338899999874


Q ss_pred             CC-CceEEEEEEeCCCcccchh
Q 013567          339 RP-YKQAEFEIIFGEGVSKLGC  359 (440)
Q Consensus       339 ~p-~~~~~~~i~~~~Gi~~~~~  359 (440)
                      ++ .....|.|.-++|+.....
T Consensus       214 ~~~~~~~~~~i~~g~gi~i~~~  235 (260)
T COG0467         214 PHSLKVIPFEITDGEGIVVYPE  235 (260)
T ss_pred             ccCCceeceEEecCCcEEEecC
Confidence            44 4677888885477754443

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.76  E-value=3.7e-17  Score=156.77  Aligned_cols=204  Identities=19%  Similarity=0.239  Sum_probs=135.7

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc--
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN--  197 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~--  197 (440)
                      +..|.++++.||..++||+|+|+++.|.|+||+||||||++++.+.++++.+++|++++++..+.  .++++|++.+.  
T Consensus         3 ~~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~   82 (230)
T PRK08533          3 LAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKL   82 (230)
T ss_pred             eEEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHh
Confidence            34678999999999999999999999999999999999999999998899999999999887664  34567887643  


Q ss_pred             ----eeecC--C--CCH---HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567          198 ----LIVCQ--P--DNG---EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA  266 (440)
Q Consensus       198 ----l~i~~--~--~~~---ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la  266 (440)
                          +.+.+  +  ...   +..+..+.......++++++||+++.+.. ...     +.   ...+.+.+.+    ..+
T Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~~-----d~---~~~~~l~~~l----~~l  149 (230)
T PRK08533         83 ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-NDA-----SE---VAVNDLMAFF----KRI  149 (230)
T ss_pred             hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CCc-----ch---HHHHHHHHHH----HHH
Confidence                22211  1  111   22233233333345789999999998752 110     10   0112222222    223


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC--ceE
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY--KQA  344 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~--~~~  344 (440)
                      ++.++|++++++... ...     ..   .....|.+|..+.++...     .+++   .++.+.|.|.|-++..  ...
T Consensus       150 ~~~g~tvi~t~~~~~-~~~-----~~---~~~~~~~~DgvI~L~~~~-----~~~~---~~R~i~V~KmR~~~~~~~~~~  212 (230)
T PRK08533        150 SSLNKVIILTANPKE-LDE-----SV---LTILRTAATMLIRLEVKV-----FGGD---LKNSAKIVKYNMAKGSFQKSI  212 (230)
T ss_pred             HhCCCEEEEEecccc-ccc-----cc---ceeEEEeeeEEEEEEEee-----cCCE---EEEEEEEEEecCCccccCCEE
Confidence            345888777766432 110     11   124688999999988642     1111   2467999999986663  478


Q ss_pred             EEEEEeCCCcc
Q 013567          345 EFEIIFGEGVS  355 (440)
Q Consensus       345 ~~~i~~~~Gi~  355 (440)
                      +|+|..+.|+.
T Consensus       213 ~f~i~~~~g~~  223 (230)
T PRK08533        213 PFRVEPKIGLA  223 (230)
T ss_pred             EEEEcCCccEE
Confidence            89998888874

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.75  E-value=3.5e-18  Score=165.95  Aligned_cols=263  Identities=17%  Similarity=0.223  Sum_probs=190.3

Q ss_pred             CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhcccccceeec
Q 013567          128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLIVC  201 (440)
Q Consensus       128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~  201 (440)
                      .+..||.+- =-+++|++++|.|++|+||||| +++++.+.+|+.|.+++++.+.....      ..+++|+.++++.+.
T Consensus        18 ~~~al~~vs-L~I~~GeI~GIIG~SGAGKSTL-iR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL   95 (339)
T COG1135          18 TVTALDDVS-LEIPKGEIFGIIGYSGAGKSTL-LRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL   95 (339)
T ss_pred             ceeeeccce-EEEcCCcEEEEEcCCCCcHHHH-HHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence            355666543 4689999999999999999999 99999999999999999997654331      467899999999887


Q ss_pred             CCCCHHHHHH---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567          202 QPDNGEMALE---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------  255 (440)
Q Consensus       202 ~~~~~ee~l~---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------  255 (440)
                      ...++.+.+.               ++.++     +++|-+.....-+| .+++|  |++|+..+||++           
T Consensus        96 ssrTV~~NvA~PLeiag~~k~ei~~RV~el-----LelVgL~dk~~~yP-~qLSG--GQKQRVaIARALa~~P~iLL~DE  167 (339)
T COG1135          96 SSRTVFENVAFPLELAGVPKAEIKQRVAEL-----LELVGLSDKADRYP-AQLSG--GQKQRVAIARALANNPKILLCDE  167 (339)
T ss_pred             ccchHHhhhhhhHhhcCCCHHHHHHHHHHH-----HHHcCChhhhccCc-hhcCc--chhhHHHHHHHHhcCCCEEEecC
Confidence            7766655433               22333     34677777777775 88887  999999999998           


Q ss_pred             ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccc
Q 013567          256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG  325 (440)
Q Consensus       256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G  325 (440)
                                ..++..|+.+.+++|+||++|||.++.+...|+...++..|+.+.......++..+...+.+    +.++
T Consensus       168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~----~fi~  243 (339)
T COG1135         168 ATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQ----EFIG  243 (339)
T ss_pred             ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHH----HHHH
Confidence                      56888899999999999999999999999999999999999999999888888776433321    1111


Q ss_pred             eEEEEEE---eeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceec--cCceEEeCceecc----------ccHHH
Q 013567          326 VRVRVRV---QKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVR--KGAWYSYGDQRLG----------QGRDK  390 (440)
Q Consensus       326 ~~~~v~v---~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k--~G~~~~~~~~~~g----------q~~~~  390 (440)
                      .......   .-++.. ......+++.|..--...+-|.+++...++-..  +|+.....+..+|          +..++
T Consensus       244 ~~~~~~~~~~~~~~l~-~~~~~~~rl~f~g~~~~~plis~~~~~~~v~~nIl~G~I~~~~~~~~G~L~v~l~g~~~~~~~  322 (339)
T COG1135         244 ETLEIDLPEELLERLE-SGDGPLLRLTFTGESADQPLLSEVARRFGVDVNILSGNIDEIQGQPFGSLVVELEGDDEEIAA  322 (339)
T ss_pred             hhccccCcHHHHhhhc-cCCceEEEEEecCccccchHHHHHHHHhCCceEEEecchhhhCCCcceEEEEEecCchhhHHH
Confidence            1000000   001111 223445777776655566667777766665332  6777777776666          23568


Q ss_pred             HHHHHHhCcHHHHHH
Q 013567          391 ALQYLRDNPLLQEEI  405 (440)
Q Consensus       391 ~~~~L~e~~~~~~ei  405 (440)
                      +.+||.+....++++
T Consensus       323 a~~~l~~~~v~~evl  337 (339)
T COG1135         323 AIEYLNEHGVKVEVL  337 (339)
T ss_pred             HHHHHHHcCceEEec
Confidence            999999887665544

>PRK05973 replicative DNA helicase; Provisional

Probab=99.75  E-value=7.3e-18  Score=161.49  Aligned_cols=136  Identities=21%  Similarity=0.267  Sum_probs=104.7

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce----ee--cCC
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL----IV--CQP  203 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l----~i--~~~  203 (440)
                      +|++. |||++|+++.|.|+||+|||+||++++.+.++.+.+++||+.|++.++.  ++..+|++.+++    .+  .++
T Consensus        54 ~~~l~-GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~  132 (237)
T PRK05973         54 AEELF-SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDA  132 (237)
T ss_pred             HHHhc-CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCC
Confidence            78865 9999999999999999999999999999998889999999999997775  456678877543    22  222


Q ss_pred             CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          204 DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       204 ~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      .+.++   ++.++....++++|||||++.+..  ...           ...+..+++.|+.++++.|+|||+++|+.+..
T Consensus       133 ~~~~~---ii~~l~~~~~~~lVVIDsLq~l~~--~~~-----------~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~  196 (237)
T PRK05973        133 ICADY---IIARLASAPRGTLVVIDYLQLLDQ--RRE-----------KPDLSVQVRALKSFARERGLIIVFISQIDRSF  196 (237)
T ss_pred             CCHHH---HHHHHHHhhCCCEEEEEcHHHHhh--ccc-----------chhHHHHHHHHHHHHHhCCCeEEEEecCcccc
Confidence            33443   344454456789999999998742  111           11246667889999999999999999998765


Q ss_pred             c
Q 013567          284 G  284 (440)
Q Consensus       284 g  284 (440)
                      .
T Consensus       197 e  197 (237)
T PRK05973        197 D  197 (237)
T ss_pred             c
Confidence            4

>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]

Probab=99.66  E-value=5.7e-17  Score=160.85  Aligned_cols=217  Identities=27%  Similarity=0.444  Sum_probs=153.9

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhccccc-
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVE-  196 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~-  196 (440)
                      ...++||+.+||.+|+||++-|.+++|+||||+|||.||+.+....-..+.+++|||.+..+...    ++.+.+.... 
T Consensus        90 ~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~~  169 (326)
T KOG1433|consen   90 LGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRGRD  169 (326)
T ss_pred             ceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhhhHH
Confidence            34689999999999999999999999999999999999977776654556789999999865442    4445554443 


Q ss_pred             ---ceeecCCCCHHH---HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 013567          197 ---NLIVCQPDNGEM---ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAG  270 (440)
Q Consensus       197 ---~l~i~~~~~~ee---~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~  270 (440)
                         ++.+......++   ....+.....+....++++||..+.+ +.+..+ .+.  .....+.++..++.|+.++++.+
T Consensus       170 ~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-~~~--~~a~~~~~~~~~~~l~~la~~~g  245 (326)
T KOG1433|consen  170 TLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-RGE--LSARQMLLAKFLRSLKKLADEFG  245 (326)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccc-cccccc-ccc--hHHHHHHHHHHHHHHHHHHHhcC
Confidence               333332222222   22223333444567899999999887 355544 111  11233456788999999999999


Q ss_pred             CEEEEEecccccccc--ccCC-ceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEE
Q 013567          271 CTLIFLNQIRYKIGV--YYGN-PEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFE  347 (440)
Q Consensus       271 ~tVI~inhl~~~ig~--~~~~-~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~  347 (440)
                      ..||++||+...+..  +|+. +..+.||.+|.|...+|+.+++.      +++     ++.+++.++++.|+ ..+.|+
T Consensus       246 ~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~------~g~-----~~~~k~~~s~~l~e-~~~~~~  313 (326)
T KOG1433|consen  246 VAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKG------KGE-----RRICKIADSPCLPE-AEAVFA  313 (326)
T ss_pred             ceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhc------ccc-----chhhhhhcCCCCCc-chhHHH
Confidence            999999999887764  6665 66788999999999999888863      222     34667888876655 466666


Q ss_pred             EEeCCCcc
Q 013567          348 IIFGEGVS  355 (440)
Q Consensus       348 i~~~~Gi~  355 (440)
                      |. ..|+.
T Consensus       314 i~-~~g~~  320 (326)
T KOG1433|consen  314 IT-EDGIS  320 (326)
T ss_pred             HH-hhhhh
Confidence            65 55653

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=99.59  E-value=1.8e-15  Score=140.19  Aligned_cols=150  Identities=25%  Similarity=0.363  Sum_probs=88.6

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCcEEEEcCCCCCChh--hh
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK----------LGGNAMLVDAEHAFDPS--YS  188 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~----------~~~~vv~id~E~~~~~~--~a  188 (440)
                      ....++++++.+|.++.|++++|+++.|+|++|+|||||+++++..+..          .+.+++||++|++....  +.
T Consensus        10 ~~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl   89 (193)
T PF13481_consen   10 SFEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRL   89 (193)
T ss_dssp             ---HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHH
T ss_pred             hhhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHH
Confidence            3557899999999999999999999999999999999999999999886          56799999999985443  12


Q ss_pred             hhhcccc---cc-----------eeecCCC----CHHHHHHHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHH
Q 013567          189 KALGVDV---EN-----------LIVCQPD----NGEMALEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIG  249 (440)
Q Consensus       189 ~~lGv~~---~~-----------l~i~~~~----~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~  249 (440)
                      ..+....   ++           +.+....    ..+..++.+.+.+.. .++++||||+++.+.+. ..+         
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~~~---------  159 (193)
T PF13481_consen   90 RALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG-DEN---------  159 (193)
T ss_dssp             HHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S--TT---------
T ss_pred             HHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC-CCC---------
Confidence            2121111   11           1111111    123445556666665 68999999999999853 111         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                       ....+.+++..|..+++++|++||+++|.++
T Consensus       160 -~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K  190 (193)
T PF13481_consen  160 -SNSAVAQLMQELKRLAKEYGVAVILVHHTNK  190 (193)
T ss_dssp             --HHHHHHHHHHHHHHHHHH--EEEEEEEE--
T ss_pred             -CHHHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence             1122467788889999999999999999875

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.58  E-value=5.1e-14  Score=129.53  Aligned_cols=167  Identities=19%  Similarity=0.213  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce------eecCCC----CH------
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL------IVCQPD----NG------  206 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l------~i~~~~----~~------  206 (440)
                      ++.|.||||+|||+|+++++...++.+.+|+|+++|++.+..  +++.+|++.+.+      .+.+..    ..      
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~   80 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR   80 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence            478999999999999999999999999999999999987764  566778876432      222211    11      


Q ss_pred             HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccc
Q 013567          207 EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY  286 (440)
Q Consensus       207 ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~  286 (440)
                      .+++..+...+...++++++||+++.+...    +   .       ......+..+...+++.|+|+|+++|.....+  
T Consensus        81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~---~-------~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~--  144 (187)
T cd01124          81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM----E---Q-------STARLEIRRLLFALKRFGVTTLLTSEQSGLEG--  144 (187)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc----C---h-------HHHHHHHHHHHHHHHHCCCEEEEEeccccCCC--
Confidence            133455555555678999999999988631    0   0       01123344445555667999999999875322  


Q ss_pred             cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567          287 YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP  340 (440)
Q Consensus       287 ~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p  340 (440)
                           ...+...+.+.++..+.+++..     .++.   .++.+.|+|+|-.+.
T Consensus       145 -----~~~~~~~~~~~aD~ii~l~~~~-----~~~~---~~r~l~i~K~R~~~~  185 (187)
T cd01124         145 -----TGFGGGDVEYLVDGVIRLRLDE-----EGGR---LRRSLSVVKMRGGPH  185 (187)
T ss_pred             -----cccCcCceeEeeeEEEEEEEEc-----cCCE---EEEEEEEEEccCCCC
Confidence                 1234566789999988888642     1111   245799999996553

A related protein is found in archaea.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.55  E-value=3.3e-14  Score=134.71  Aligned_cols=139  Identities=20%  Similarity=0.273  Sum_probs=105.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -|++|+++.|.||+||||||| |+++.++.++++|.++|++.+....       .+.+.+|+.++++.+.+..++.|.+.
T Consensus        27 ~i~~Ge~vaI~GpSGSGKSTL-Lniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~  105 (226)
T COG1136          27 EIEAGEFVAIVGPSGSGKSTL-LNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE  105 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence            589999999999999999999 9999999999999999998543322       25677999999999999999887766


Q ss_pred             HHHHHHhc----------CCcceEEEecccc-cCCchhhcccchhhhHHHHHHHH---------------------HHHH
Q 013567          212 IADRMCRS----------GAIDLICVDSVSA-LTPRAEIEGEIGMQQIGLQARLM---------------------SQAL  259 (440)
Q Consensus       212 ~i~~l~~~----------~~~~lvVIDsl~~-l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l  259 (440)
                      ....+...          .-...+-+..... .. +.+++|  |++|+...||++                     ..++
T Consensus       106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSG--GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~  182 (226)
T COG1136         106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSG--GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL  182 (226)
T ss_pred             hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCH--HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHH
Confidence            32111000          0012333433333 33 378887  999999999998                     4567


Q ss_pred             HHHHHHHHhcCCEEEEEecccc
Q 013567          260 RKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       260 ~~L~~lak~~~~tVI~inhl~~  281 (440)
                      ..|..+.++.|.|||++||...
T Consensus       183 ~ll~~~~~~~g~tii~VTHd~~  204 (226)
T COG1136         183 ELLRELNKERGKTIIMVTHDPE  204 (226)
T ss_pred             HHHHHHHHhcCCEEEEEcCCHH
Confidence            7777788889999999999975

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.54  E-value=2.1e-14  Score=133.48  Aligned_cols=154  Identities=22%  Similarity=0.244  Sum_probs=110.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMA-----  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~-----  209 (440)
                      -+.+|+++.|+||+||||||| |++++++..+++|.++|+++.....    .+.+.+|+.++++.+++..++-+.     
T Consensus        24 ~v~~Gevv~iiGpSGSGKSTl-LRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap  102 (240)
T COG1126          24 SVEKGEVVVIIGPSGSGKSTL-LRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP  102 (240)
T ss_pred             eEcCCCEEEEECCCCCCHHHH-HHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence            468999999999999999999 9999999999999999999765432    257789999999998887765433     


Q ss_pred             -----------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567          210 -----------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ  257 (440)
Q Consensus       210 -----------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~  257 (440)
                                 .+.+.+++.     .|-+-.-+..+| ..++|  |++|+..+||++                     .+
T Consensus       103 ~~v~~~~k~eA~~~A~~lL~-----~VGL~~ka~~yP-~qLSG--GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~E  174 (240)
T COG1126         103 VKVKKLSKAEAREKALELLE-----KVGLADKADAYP-AQLSG--GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGE  174 (240)
T ss_pred             HHHcCCCHHHHHHHHHHHHH-----HcCchhhhhhCc-cccCc--HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHH
Confidence                       333333332     344444555565 77887  999999999987                     34


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      .+.-++.++ +.|.|+|++||.+.-.....++..+...|..+...
T Consensus       175 VL~vm~~LA-~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g  218 (240)
T COG1126         175 VLDVMKDLA-EEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG  218 (240)
T ss_pred             HHHHHHHHH-HcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence            555555544 56899999999986433323334445555444443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.54  E-value=2.4e-14  Score=135.94  Aligned_cols=162  Identities=19%  Similarity=0.267  Sum_probs=122.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALEIADR  215 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~  215 (440)
                      -|++|+++.+.||+||||||+ |++++++..+..|.++|++++..+.   .+.+++|+..+.+-+++..++.+.+..+.+
T Consensus        23 ~I~~gef~vliGpSGsGKTTt-LkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~  101 (309)
T COG1125          23 TIEEGEFLVLIGPSGSGKTTT-LKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK  101 (309)
T ss_pred             EecCCeEEEEECCCCCcHHHH-HHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence            578999999999999999999 9999999999999999999987765   378899999999999988888877665554


Q ss_pred             HHhc----------CCcceEEEec--ccccCCchhhcccchhhhHHHHHHHHH--------------------H-HHHHH
Q 013567          216 MCRS----------GAIDLICVDS--VSALTPRAEIEGEIGMQQIGLQARLMS--------------------Q-ALRKM  262 (440)
Q Consensus       216 l~~~----------~~~~lvVIDs--l~~l~~~~el~~~~g~~q~~~~ar~l~--------------------~-~l~~L  262 (440)
                      +..-          .-.+++-+|.  +..-+| .+++|  |++|+.+.+|+++                    . .=..+
T Consensus       102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~  178 (309)
T COG1125         102 LLGWDKERIKKRADELLDLVGLDPSEYADRYP-HELSG--GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI  178 (309)
T ss_pred             hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-hhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence            4211          1134666764  455554 78887  9999999999872                    2 33445


Q ss_pred             HHHHHhcCCEEEEEeccccccccccCCceeecccceeeeece
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFAS  304 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~  304 (440)
                      +.+-++.+.||||+||..++.-.+.+.......|...-+...
T Consensus       179 ~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P  220 (309)
T COG1125         179 KELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP  220 (309)
T ss_pred             HHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCH
Confidence            667788999999999998754333333444555555544443

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.49  E-value=4.4e-13  Score=124.40  Aligned_cols=201  Identities=20%  Similarity=0.246  Sum_probs=136.4

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce---
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL---  198 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l---  198 (440)
                      -+++|-++||+-||||+|-|.++.|-|++|+|||.|+.+++.+++..+..+.|+++|.+...-  .+..++++..+.   
T Consensus         9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~   88 (235)
T COG2874           9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLS   88 (235)
T ss_pred             hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhc
Confidence            489999999999999999999999999999999999999999999999999999999876553  345567665432   


Q ss_pred             ---eecC----C-----CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567          199 ---IVCQ----P-----DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA  266 (440)
Q Consensus       199 ---~i~~----~-----~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la  266 (440)
                         .+++    +     ...+.+++.+-...+....++++|||+..+....+             .+++.+++..++.++
T Consensus        89 G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~-------------~~~vl~fm~~~r~l~  155 (235)
T COG2874          89 GRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDS-------------EDAVLNFMTFLRKLS  155 (235)
T ss_pred             ceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhccc-------------HHHHHHHHHHHHHHH
Confidence               3332    1     12244555555555666789999999998874221             123556666666654


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC--ceE
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY--KQA  344 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~--~~~  344 (440)
                       ..|.+||++-|...--..      ++   ..+...+++-++++..+     -|+.   .+..++++|-+-++..  +..
T Consensus       156 -d~gKvIilTvhp~~l~e~------~~---~rirs~~d~~l~L~~~~-----~Gg~---~~~~~~i~K~~ga~~s~~~~I  217 (235)
T COG2874         156 -DLGKVIILTVHPSALDED------VL---TRIRSACDVYLRLRLEE-----LGGD---LIKVLEIVKYRGARKSFQNII  217 (235)
T ss_pred             -hCCCEEEEEeChhhcCHH------HH---HHHHHhhheeEEEEhhh-----hCCe---eeEEEEEeeecCchhhcCCce
Confidence             457888888886531110      00   11233566767776421     1121   2235688887755543  567


Q ss_pred             EEEEEeCCCcc
Q 013567          345 EFEIIFGEGVS  355 (440)
Q Consensus       345 ~~~i~~~~Gi~  355 (440)
                      .|++--+-|+.
T Consensus       218 ~F~V~P~~Glk  228 (235)
T COG2874         218 SFRVEPGFGLK  228 (235)
T ss_pred             eEEecCCCceE
Confidence            78887666663

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.48  E-value=9.4e-14  Score=140.65  Aligned_cols=258  Identities=13%  Similarity=0.194  Sum_probs=153.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---hhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---YSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|+|||||||| +++++++.++..|.++++++.....   .   ..+.+|+.+++..++...++.+.+..
T Consensus        27 ~i~~Gei~gIiG~sGaGKSTL-lr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~  105 (343)
T TIGR02314        27 HVPAGQIYGVIGASGAGKSTL-IRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL  105 (343)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence            478999999999999999999 9999999999999999998864331   1   34568998888777666666554432


Q ss_pred             HHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                      .....       .   ..-.+.+-+.......+ .++++  |++|+...+|++                     ..++..
T Consensus       106 ~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-~~LSg--GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l  182 (343)
T TIGR02314       106 PLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL  182 (343)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-hhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            11100       0   00012232333333332 56666  889999999987                     344555


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEE---eeccCC
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRV---QKSKVS  338 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v---~Knr~~  338 (440)
                      |..+.++.++|||+++|.++.+...|+.......|+.........++-.+.....    ...++......+   ...+..
T Consensus       183 L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~  258 (343)
T TIGR02314       183 LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLA----QKFIRSTLHLSIPEDYQERLQ  258 (343)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHH----HHHHhhcccccCChhHHhhcc
Confidence            6666666799999999999887766776666777777654433222211110000    000000000000   000010


Q ss_pred             --CC-CceEEEEEEeCCCcccchhhhhHHHHccceec--cCceEEeCceecc----------ccHHHHHHHHHhCcHHHH
Q 013567          339 --RP-YKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVR--KGAWYSYGDQRLG----------QGRDKALQYLRDNPLLQE  403 (440)
Q Consensus       339 --~p-~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k--~G~~~~~~~~~~g----------q~~~~~~~~L~e~~~~~~  403 (440)
                        ++ .....+.+.|..+-....-|..++...++-..  .|++-++.+..+|          +..+++.+||+++...++
T Consensus       259 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~  338 (343)
T TIGR02314       259 ATPFADSVPMVRLEFTGQTVDAPLLSQTARRFNVDNSILSSQMDYAGGVKFGIMLAEMHGTQQDTQAAIAYLQEHNVKVE  338 (343)
T ss_pred             cccCCCcceEEEEEEcCCCCCchHHHHHHHHhCCcEEEEEeeeeeECCEEEEEEEEEEeCCHHHHHHHHHHHHHcCCEEE
Confidence              11 11234566666655666667666666554221  6788778877766          234568888888765554


Q ss_pred             H
Q 013567          404 E  404 (440)
Q Consensus       404 e  404 (440)
                      +
T Consensus       339 ~  339 (343)
T TIGR02314       339 V  339 (343)
T ss_pred             E
Confidence            3

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.48  E-value=1.1e-13  Score=139.12  Aligned_cols=177  Identities=20%  Similarity=0.283  Sum_probs=133.1

Q ss_pred             cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHH
Q 013567          129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      ...||.+ .--|++|+++.|.||+||||||+ |++++++..+++|.++++++...+. ...|.+|+.+++.-+++..++.
T Consensus        18 ~~av~~i-sl~i~~Gef~~lLGPSGcGKTTl-LR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~   95 (352)
T COG3842          18 FTAVDDI-SLDIKKGEFVTLLGPSGCGKTTL-LRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE   95 (352)
T ss_pred             eeEEecc-eeeecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence            4445543 24689999999999999999999 9999999999999999999987654 3678899999999999888887


Q ss_pred             HHHHHHHHHHh-----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          208 MALEIADRMCR-----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       208 e~l~~i~~l~~-----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                      +.+..--++.+           ..-.++|-++.+..-.| .+++|  |++|+...||++                     
T Consensus        96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-~qLSG--GQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR  172 (352)
T COG3842          96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-HQLSG--GQQQRVALARALVPEPKVLLLDEPLSALDAKLR  172 (352)
T ss_pred             HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-hhhCh--HHHHHHHHHHHhhcCcchhhhcCcccchhHHHH
Confidence            76442111100           01245777888777775 88887  999999999987                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEe
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR  310 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~  310 (440)
                      .+.-..|+.+.++.|+|.|++||..++--.+.+.......|++........++-+
T Consensus       173 ~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~  227 (352)
T COG3842         173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER  227 (352)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence            2455678888899999999999998765555555566666666655544444433

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.46  E-value=1.1e-12  Score=116.66  Aligned_cols=157  Identities=27%  Similarity=0.325  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhh----hcccccceeecCCC----CHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA----LGVDVENLIVCQPD----NGEMALEIADRM  216 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~----lGv~~~~l~i~~~~----~~ee~l~~i~~l  216 (440)
                      ++.|+|+||+|||||+.+++......+..++|++.+........+.    .....++..+....    ........+...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL   80 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence            4789999999999999999998888889999999998876543221    11122344433322    233333344555


Q ss_pred             HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccc
Q 013567          217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGG  296 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG  296 (440)
                      .....++++|||+++.+.+. ....      .....+.+.+.+..|...+++.+++||+++|........+.+   ..++
T Consensus        81 ~~~~~~~~lviDe~~~~~~~-~~~~------~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~---~~~~  150 (165)
T cd01120          81 RERGGDDLIILDELTRLVRA-LREI------REGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRL---TRGA  150 (165)
T ss_pred             HhCCCCEEEEEEcHHHHHHH-HHHH------HhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCccc---ccCc
Confidence            56678999999999988742 1110      001123456778888999999999999999998766544333   5677


Q ss_pred             ceeeeeceEEEEEee
Q 013567          297 IALKFFASVRLEIRS  311 (440)
Q Consensus       297 ~~l~~~a~~rl~l~r  311 (440)
                      ..+.+.++.++.+++
T Consensus       151 ~~~~~~~d~~~~l~~  165 (165)
T cd01120         151 QNLEDIADTVIVLSR  165 (165)
T ss_pred             cceeeecceEEEEeC
Confidence            889999999988864

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.42  E-value=2.7e-13  Score=131.87  Aligned_cols=156  Identities=17%  Similarity=0.282  Sum_probs=118.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC---CCCC-hhhhhhhcccccceeecCCCCHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE---HAFD-PSYSKALGVDVENLIVCQPDNGEMALEI--  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E---~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~l~~--  212 (440)
                      -|+.|+++++.||+||||||| |++++++..++.|.++++++   +... ....+++|+.+++.-+++..++.+.+..  
T Consensus        24 ~i~~Ge~vaLlGpSGaGKsTl-LRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl  102 (345)
T COG1118          24 DIKSGELVALLGPSGAGKSTL-LRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGL  102 (345)
T ss_pred             eecCCcEEEEECCCCCcHHHH-HHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence            567999999999999999999 99999999999999999999   4444 2467889999988877777666554432  


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                                     +.++     ++++-++.++.-+| ..++|  |++|+...||++                    +.
T Consensus       103 ~~~~~~p~~~~~r~rv~el-----L~lvqL~~la~ryP-~QLSG--GQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~  174 (345)
T COG1118         103 KVRKERPSEAEIRARVEEL-----LRLVQLEGLADRYP-AQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRK  174 (345)
T ss_pred             cccccCCChhhHHHHHHHH-----HHHhcccchhhcCc-hhcCh--HHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence                           2222     45777889999886 78887  899999999987                    22


Q ss_pred             HH-HHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          258 AL-RKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       258 ~l-~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                      .+ +.|..+..+.++|+|++||+.++.-..++.......|++-...+
T Consensus       175 ~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~  221 (345)
T COG1118         175 ELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP  221 (345)
T ss_pred             HHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCC
Confidence            23 33445556679999999999887766666656666665544333

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=99.40  E-value=9e-12  Score=119.98  Aligned_cols=195  Identities=16%  Similarity=0.185  Sum_probs=121.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhh------------cCCcEEEEcCCCCCChh--hhhhhcccc------cceee--
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQK------------LGGNAMLVDAEHAFDPS--YSKALGVDV------ENLIV--  200 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~------------~~~~vv~id~E~~~~~~--~a~~lGv~~------~~l~i--  200 (440)
                      |.+..|+||+|+|||+|+++++..++.            .+++|+|+++|++.+..  +...++...      +++.+  
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~   80 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS   80 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence            678999999999999999999988752            45789999999987643  222332211      22222  


Q ss_pred             --------cCCC---CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 013567          201 --------CQPD---NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA  269 (440)
Q Consensus       201 --------~~~~---~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~  269 (440)
                              ....   ....+..+++. +...+++++|||++..+....+.+           ...+..++..|..++++.
T Consensus        81 g~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~lvviDpl~~~~~~~~~d-----------~~~~~~~~~~L~~~a~~~  148 (239)
T cd01125          81 GRIQPISIAREGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSFHGVSEND-----------NGAMDAVIKALRRIAAQT  148 (239)
T ss_pred             cCCCceecccCCcccccHHHHHHHHH-HHhcCCCEEEECChHHhCCCCcCC-----------HHHHHHHHHHHHHHHHHh
Confidence                    1111   12222223333 234679999999988774211111           112455677778888899


Q ss_pred             CCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccc---cCCCcccceEEEEEEeeccCC-CCCceEE
Q 013567          270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKS---VKGDEDVGVRVRVRVQKSKVS-RPYKQAE  345 (440)
Q Consensus       270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~---~~g~~~~G~~~~v~v~Knr~~-~p~~~~~  345 (440)
                      |++||+++|..+.-+..-.......|..+|...+...+.+.+...-..   .-+.+..+..+++-+.|+.++ ||.....
T Consensus       149 g~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~~~~~~w  228 (239)
T cd01125         149 GAAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEADRW  228 (239)
T ss_pred             CCEEEEEeccCcccccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCCCCCCeE
Confidence            999999999986432111123456678888888888888887533211   011222344566778888886 6665555


Q ss_pred             EEEE
Q 013567          346 FEII  349 (440)
Q Consensus       346 ~~i~  349 (440)
                      |...
T Consensus       229 ~~~~  232 (239)
T cd01125         229 YRRN  232 (239)
T ss_pred             EEEc
Confidence            5554

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.39  E-value=8.7e-13  Score=132.04  Aligned_cols=166  Identities=17%  Similarity=0.242  Sum_probs=121.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+..|+++.|.||+||||||| |++++++..+.+|.++|+++...+. ...|.+++.+++.-+++..++.+.+..--++.
T Consensus        25 ~i~~Gef~vllGPSGcGKSTl-Lr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~  103 (338)
T COG3839          25 DIEDGEFVVLLGPSGCGKSTL-LRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR  103 (338)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence            367899999999999999999 9999999999999999999987763 46788999999999998888876654322210


Q ss_pred             h----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHHHHHHHH
Q 013567          218 R----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALRKMSGNA  266 (440)
Q Consensus       218 ~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~~L~~la  266 (440)
                      .          ..-.+++-|+.+..-.| .+++|  |++|+...+|++                    + ..-..++++-
T Consensus       104 ~~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSG--GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh  180 (338)
T COG3839         104 GVPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSG--GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH  180 (338)
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHhcCc-ccCCh--hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence            0          01134666777777775 77877  899999999987                    1 2334456666


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEE
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE  308 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~  308 (440)
                      ++.++|+|.+||.-.+.-.+.+.......|..........++
T Consensus       181 ~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely  222 (338)
T COG3839         181 ERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY  222 (338)
T ss_pred             HhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence            779999999999976544444444445556555444444333

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.39  E-value=1.1e-12  Score=126.63  Aligned_cols=155  Identities=23%  Similarity=0.269  Sum_probs=99.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCC-----------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPD-----------  204 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~-----------  204 (440)
                      -+++|+++.|.|||||||||| |++++++.++..|.+++++....+.   .+++.+++.++........           
T Consensus        24 ~i~~G~i~~iiGpNG~GKSTL-Lk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~  102 (258)
T COG1120          24 SIPKGEITGILGPNGSGKSTL-LKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY  102 (258)
T ss_pred             EecCCcEEEEECCCCCCHHHH-HHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence            578999999999999999999 9999999999999999999876543   4788899887653211111           


Q ss_pred             ---------CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567          205 ---------NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------  255 (440)
Q Consensus       205 ---------~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------  255 (440)
                               +.++. +.+.+.++     .+-+..+..-. -.+++|  |++|+...||++                    
T Consensus       103 p~~~~~~~~~~~D~-~~v~~aL~-----~~~~~~la~r~-~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~  173 (258)
T COG1120         103 PHLGLFGRPSKEDE-EIVEEALE-----LLGLEHLADRP-VDELSG--GERQRVLIARALAQETPILLLDEPTSHLDIAH  173 (258)
T ss_pred             cccccccCCCHhHH-HHHHHHHH-----HhCcHHHhcCc-ccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence                     11111 11221111     11122222222 244555  677777777776                    


Q ss_pred             -HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                       .+.+..+.++.++.|.|||++.|+-+-.-.+++......+|..+.+..
T Consensus       174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~  222 (258)
T COG1120         174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT  222 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence             356777888888999999999998754333223233333444444433

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.37  E-value=2.7e-12  Score=117.22  Aligned_cols=157  Identities=21%  Similarity=0.287  Sum_probs=114.9

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccc
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVEN  197 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~  197 (440)
                      ..+.|-+.|+.+- =-+++|+++-|+||+|+||||| ++++....++..|.++|++.+....      .+.+++|+.+++
T Consensus        10 ~Y~~g~~aL~~vs-~~i~~Gef~fl~GpSGAGKSTl-lkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD   87 (223)
T COG2884          10 AYPGGREALRDVS-FHIPKGEFVFLTGPSGAGKSTL-LKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD   87 (223)
T ss_pred             hcCCCchhhhCce-EeecCceEEEEECCCCCCHHHH-HHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeee
Confidence            4566766887764 5789999999999999999999 9999999999999999988764322      267889999999


Q ss_pred             eeecCCCCHHHHHHHHHHHHh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------
Q 013567          198 LIVCQPDNGEMALEIADRMCR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------  255 (440)
Q Consensus       198 l~i~~~~~~ee~l~~i~~l~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------  255 (440)
                      +.+....++-+.....-..+.          ..-.++|-+-.-...+| .+++|  |++|+..+||++            
T Consensus        88 ~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSG--GEQQRvaIARAiV~~P~vLlADEP  164 (223)
T COG2884          88 FRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSG--GEQQRVAIARAIVNQPAVLLADEP  164 (223)
T ss_pred             ccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCc--hHHHHHHHHHHHccCCCeEeecCC
Confidence            888776665444332211100          01134566666666665 77777  899999999987            


Q ss_pred             --------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 --------SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 --------~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                              +.-+..|..-..+.|+|||+.+|...-+..
T Consensus       165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~  202 (223)
T COG2884         165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR  202 (223)
T ss_pred             CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence                    333444455567789999999999875544

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.37  E-value=3.4e-12  Score=120.57  Aligned_cols=160  Identities=20%  Similarity=0.270  Sum_probs=112.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALE-  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~-  211 (440)
                      -+++|++++|.||+|+||||| ++++.++.+++.|.++|++++....      ...+++|+.+|.=-+++..++.+... 
T Consensus        30 ~V~~Gei~~iiGgSGsGKStl-Lr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf  108 (263)
T COG1127          30 DVPRGEILAILGGSGSGKSTL-LRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF  108 (263)
T ss_pred             eecCCcEEEEECCCCcCHHHH-HHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence            479999999999999999999 9999999999999999999985433      14667899887655555555433322 


Q ss_pred             -----------HHHHHHhcCCcceEEEecc-cccCCchhhcccchhhhHHHHHHHH--------------------HHHH
Q 013567          212 -----------IADRMCRSGAIDLICVDSV-SALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL  259 (440)
Q Consensus       212 -----------~i~~l~~~~~~~lvVIDsl-~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l  259 (440)
                                 .++++. ..++.+|-+... ..++| ++++|  |++.+...||++                    +..+
T Consensus       109 plre~~~lp~~~i~~lv-~~KL~~VGL~~~~~~~~P-sELSG--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~  184 (263)
T COG1127         109 PLREHTKLPESLIRELV-LMKLELVGLRGAAADLYP-SELSG--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI  184 (263)
T ss_pred             ehHhhccCCHHHHHHHH-HHHHHhcCCChhhhhhCc-hhhcc--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence                       111111 013445666655 56665 88888  888888889987                    2344


Q ss_pred             HHHH-HHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          260 RKMS-GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       260 ~~L~-~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                      ..|. .+-+..+.|+|++||....+-..++.......|+.+.+..
T Consensus       185 ~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt  229 (263)
T COG1127         185 DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT  229 (263)
T ss_pred             HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCC
Confidence            4444 4445689999999999887766666656666666554444

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.36  E-value=2.7e-12  Score=127.48  Aligned_cols=169  Identities=18%  Similarity=0.193  Sum_probs=115.2

Q ss_pred             cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCH
Q 013567          129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNG  206 (440)
Q Consensus       129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~  206 (440)
                      ...||.+- .-+++|++++|.|||||||||| ++++.+..++.+|.+.++++....  ....+++|+.+++..+++..++
T Consensus        18 ~~~l~~vs-~~i~~Gei~gllG~NGAGKTTl-lk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~   95 (293)
T COG1131          18 KTALDGVS-FEVEPGEIFGLLGPNGAGKTTL-LKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV   95 (293)
T ss_pred             CEEEecee-EEEcCCeEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccH
Confidence            34555543 6789999999999999999999 999999999999999999987665  3467789999999888888888


Q ss_pred             HHHHHHHHHHHhcC----------CcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          207 EMALEIADRMCRSG----------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       207 ee~l~~i~~l~~~~----------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                      .+.+.....+....          -++.+-++.... .+...+++  |++|+...+.++                    +
T Consensus        96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~lS~--G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~  172 (293)
T COG1131          96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN-KKVRTLSG--GMKQRLSIALALLHDPELLILDEPTSGLDPESR  172 (293)
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhC-cchhhcCH--HHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHH
Confidence            88777655543211          011222222111 01133333  667766666665                    2


Q ss_pred             -HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          257 -QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       257 -~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                       .+...|..++++.++|||+++|..+.+..+|+.......|+.+...
T Consensus       173 ~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g  219 (293)
T COG1131         173 REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG  219 (293)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence             3344444555555599999999999887766655555566555444

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.35  E-value=3.6e-12  Score=121.39  Aligned_cols=133  Identities=23%  Similarity=0.295  Sum_probs=98.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH-----------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE-----------  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e-----------  207 (440)
                      -+++|+++.|.||+||||||| |++++++.++..|.+.+++.....+  ....|+.+|+..+++-.++.           
T Consensus        25 ~v~~GEfvsilGpSGcGKSTL-LriiAGL~~p~~G~V~~~g~~v~~p--~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~  101 (248)
T COG1116          25 SVEKGEFVAILGPSGCGKSTL-LRLIAGLEKPTSGEVLLDGRPVTGP--GPDIGYVFQEDALLPWLTVLDNVALGLELRG  101 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCcccCCC--CCCEEEEeccCcccchhhHHhhheehhhccc
Confidence            478999999999999999999 9999999999999999998865322  23456666555444433332           


Q ss_pred             ----HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHHHH
Q 013567          208 ----MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALRKM  262 (440)
Q Consensus       208 ----e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~~L  262 (440)
                          +..+.+.++     ++.|-+......+| .+++|  |++|+...+|++                    + ..-..|
T Consensus       102 ~~~~e~~~~a~~~-----L~~VgL~~~~~~~P-~qLSG--GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l  173 (248)
T COG1116         102 KSKAEARERAKEL-----LELVGLAGFEDKYP-HQLSG--GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL  173 (248)
T ss_pred             cchHhHHHHHHHH-----HHHcCCcchhhcCc-cccCh--HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH
Confidence                233344444     34566667777776 88888  899999999987                    2 233446


Q ss_pred             HHHHHhcCCEEEEEeccccc
Q 013567          263 SGNASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~  282 (440)
                      .++.++.+.||++|||..++
T Consensus       174 ~~lw~~~~~TvllVTHdi~E  193 (248)
T COG1116         174 LRLWEETRKTVLLVTHDVDE  193 (248)
T ss_pred             HHHHHhhCCEEEEEeCCHHH
Confidence            67788999999999999753

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.33  E-value=4.1e-12  Score=117.04  Aligned_cols=153  Identities=17%  Similarity=0.177  Sum_probs=101.0

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccceeecCCCCHHH
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      .++.+. =-...|++++|.|+||+||||+ |++++.++.|+.|++++++-+.....  ..+.+|+.+...-++...+.+|
T Consensus        17 AvrdVS-F~ae~Gei~GlLG~NGAGKTT~-LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE   94 (245)
T COG4555          17 AVRDVS-FEAEEGEITGLLGENGAGKTTL-LRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE   94 (245)
T ss_pred             hhhhee-EEeccceEEEEEcCCCCCchhH-HHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence            444433 3467899999999999999999 99999999999999999998766543  6778999887766666677666


Q ss_pred             HHHHHHHHHhcCC----------cceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567          209 ALEIADRMCRSGA----------IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA  258 (440)
Q Consensus       209 ~l~~i~~l~~~~~----------~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~  258 (440)
                      .+.....+..-.+          .+.+-+++...-. ..+++  -|++|....||++                    +..
T Consensus        95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rR-v~~~S--~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~  171 (245)
T COG4555          95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRR-VGEFS--TGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK  171 (245)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHH-Hhhhc--hhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHH
Confidence            5443322210000          0011111111100 01222  2556666666655                    456


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      ++.....++..|.+|||.+|.+.++...|+
T Consensus       172 ~~dfi~q~k~egr~viFSSH~m~EvealCD  201 (245)
T COG4555         172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCD  201 (245)
T ss_pred             HHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence            666677778889999999999988865444

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=2e-11  Score=117.54  Aligned_cols=144  Identities=19%  Similarity=0.212  Sum_probs=94.1

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceee--cCCCCHHH
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIV--CQPDNGEM  208 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i--~~~~~~ee  208 (440)
                      .|+.+- --+++|+++.|+||||+||||| ++++.+++++..|.+++.+.......-..++|+.+++..+  .-|.++.+
T Consensus        19 vl~~i~-l~v~~G~~~~iiGPNGaGKSTL-lK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d   96 (254)
T COG1121          19 VLEDIS-LSVEKGEITALIGPNGAGKSTL-LKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD   96 (254)
T ss_pred             eeeccE-EEEcCCcEEEEECCCCCCHHHH-HHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH
Confidence            344432 4689999999999999999999 9999999999999999988765544445678888886643  33455555


Q ss_pred             HHHH-------------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          209 ALEI-------------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       209 ~l~~-------------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                      ++..                   +++.++     .|-+-.+..-. -.+++|  |++|+...||++              
T Consensus        97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~-----~Vgm~~~~~r~-i~~LSG--GQ~QRV~lARAL~~~p~lllLDEP~~  168 (254)
T COG1121          97 VVLLGRYGKKGWFRRLNKKDKEKVDEALE-----RVGMEDLRDRQ-IGELSG--GQKQRVLLARALAQNPDLLLLDEPFT  168 (254)
T ss_pred             HHHccCcccccccccccHHHHHHHHHHHH-----HcCchhhhCCc-ccccCc--HHHHHHHHHHHhccCCCEEEecCCcc
Confidence            4332                   111111     11111111111 245555  777777777776              


Q ss_pred             -------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 -------SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 -------~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                             ..+.+-|..+.++ |+||++++|+-..+..
T Consensus       169 gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~  204 (254)
T COG1121         169 GVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA  204 (254)
T ss_pred             cCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh
Confidence                   2344444444444 9999999999775543

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=6.6e-12  Score=127.41  Aligned_cols=159  Identities=16%  Similarity=0.258  Sum_probs=101.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.+++++......      .+.+.+|+.+++..++...++.+.+..
T Consensus        27 ~i~~Gei~~iiG~nGsGKSTL-lk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~  105 (343)
T PRK11153         27 HIPAGEIFGVIGASGAGKSTL-IRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL  105 (343)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHH
Confidence            468999999999999999999 9999999999999999998754321      124568888877666555555444332


Q ss_pred             HHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                      .....       .   ..-.+.+-++...... ..++++  |++|+...+|++                     ..++..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~  182 (343)
T PRK11153        106 PLELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL  182 (343)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            11100       0   0001112222221222 244554  778888778776                     234444


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      |..+.++.++|||+++|..+.+..+++.......|+....
T Consensus       183 L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~  222 (343)
T PRK11153        183 LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ  222 (343)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            4555556699999999998877666665556666665543

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=9.5e-12  Score=126.78  Aligned_cols=159  Identities=14%  Similarity=0.255  Sum_probs=108.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.++++++...+. ...+.+|+.+++..+++..++.+.+.......
T Consensus        26 ~i~~Ge~~~llG~sGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~  104 (356)
T PRK11650         26 DVADGEFIVLVGPSGCGKSTL-LRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR  104 (356)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence            467999999999999999999 9999999999999999999865432 23467899998887776667665544221100


Q ss_pred             -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567          218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA  266 (440)
Q Consensus       218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la  266 (440)
                             .   ..-.+.+-++.+..-.+ .++++  |++|+...+|++                     ..+...|+.+.
T Consensus       105 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~LSg--Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~  181 (356)
T PRK11650        105 GMPKAEIEERVAEAARILELEPLLDRKP-RELSG--GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH  181 (356)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                   0   00122333444444443 56665  888888888887                     23444555566


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      ++.++|+|+++|....+-.+++.......|+....
T Consensus       182 ~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~  216 (356)
T PRK11650        182 RRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI  216 (356)
T ss_pred             HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence            66799999999998766555555555556665443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.28  E-value=9.6e-12  Score=117.83  Aligned_cols=158  Identities=18%  Similarity=0.221  Sum_probs=106.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccccceee--cCCCCHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVENLIV--CQPDNGEMALE-  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~~l~i--~~~~~~ee~l~-  211 (440)
                      -+.+|+.++|+|++||||||| .++++++.++..|.+++++.......    +.+.+.+.+++.+-  -+..++.+++. 
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL-~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E  107 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTL-ARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE  107 (252)
T ss_pred             EecCCCEEEEEcCCCCCHHHH-HHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence            478999999999999999999 89999999999999999997554432    34445555543321  11122222211 


Q ss_pred             ------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567          212 ------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ  257 (440)
Q Consensus       212 ------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~  257 (440)
                                  .+.+++.     .|-++ ++...+| .+++|  |++|+...+|++                     ++
T Consensus       108 pl~~~~~~~~~~~i~~~L~-----~VgL~~~~l~R~P-~eLSG--GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~  179 (252)
T COG1124         108 PLRPHGLSKSQQRIAELLD-----QVGLPPSFLDRRP-HELSG--GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ  179 (252)
T ss_pred             hhccCCccHHHHHHHHHHH-----HcCCCHHHHhcCc-hhcCh--hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHH
Confidence                        1222221     22222 2223333 56666  777777777776                     57


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceE
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASV  305 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~  305 (440)
                      ++.-|..+.++++.|.|+|+|....+.-+|+...++..|..++.+...
T Consensus       180 IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~  227 (252)
T COG1124         180 ILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE  227 (252)
T ss_pred             HHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence            788888888999999999999998887777777777777776665543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.27  E-value=1.3e-11  Score=112.13  Aligned_cols=138  Identities=20%  Similarity=0.278  Sum_probs=94.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHH--------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMA--------  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~--------  209 (440)
                      -++.|++++|.||+|+||||| ++++++...|..|.++|++++... +.+.+-+.+.++.-.++...++++.        
T Consensus        21 ~v~~ge~vAi~GpSGaGKSTL-LnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~   99 (231)
T COG3840          21 TVPAGEIVAILGPSGAGKSTL-LNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG   99 (231)
T ss_pred             eecCCcEEEEECCCCccHHHH-HHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence            578999999999999999999 999999999999999999986433 3344445555543333323333222        


Q ss_pred             -------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          210 -------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       210 -------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                             .+.++...     ..+-+.+...-.| .+++|  |++|+...+|.+                     .+.+.-
T Consensus       100 LkL~a~~r~~v~~aa-----~~vGl~~~~~RLP-~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L  171 (231)
T COG3840         100 LKLNAEQREKVEAAA-----AQVGLAGFLKRLP-GELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL  171 (231)
T ss_pred             cccCHHHHHHHHHHH-----HHhChhhHhhhCc-cccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence                   11222221     1234555555554 66666  788888877765                     345566


Q ss_pred             HHHHHHhcCCEEEEEecccccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      +..++.+.+.|+++++|..++...
T Consensus       172 v~~l~~E~~~TllmVTH~~~Da~~  195 (231)
T COG3840         172 VSQLCDERKMTLLMVTHHPEDAAR  195 (231)
T ss_pred             HHHHHHhhCCEEEEEeCCHHHHHH
Confidence            677888999999999999876643

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.27  E-value=1.3e-11  Score=125.60  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=110.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      =+++|++++|.|||||||||| +++++++..+..|.++++++...+. ...+.+|+.+++..+++..++.+.+.......
T Consensus        26 ~i~~Ge~~~l~GpsGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~  104 (353)
T TIGR03265        26 SVKKGEFVCLLGPSGCGKTTL-LRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR  104 (353)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence            367899999999999999999 9999999999999999998865432 24567899999887777667666544321100


Q ss_pred             -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567          218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA  266 (440)
Q Consensus       218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la  266 (440)
                             +   ..-.+.+-++.+..-.+ .++++  |++|+...+|++                     .+....|+.+.
T Consensus       105 ~~~~~~~~~~~~~~l~~l~L~~~~~~~~-~~LSg--Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~  181 (353)
T TIGR03265       105 GMGRAEVAERVAELLDLVGLPGSERKYP-GQLSG--GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ  181 (353)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCchhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                   0   00122333444444443 56665  888888888887                     23444455566


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      ++.++|+|+++|..+.+-.+++....+..|+.....
T Consensus       182 ~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g  217 (353)
T TIGR03265       182 RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG  217 (353)
T ss_pred             HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence            677999999999988765555555556666665443

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.26  E-value=1.8e-11  Score=124.92  Aligned_cols=159  Identities=17%  Similarity=0.234  Sum_probs=108.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---h----hhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---Y----SKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~----a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -|++|++++|.|||||||||| +++++++..+..|.++|+++......   +    .+.+++.+++..+++..++.+.+.
T Consensus        15 ~i~~Gei~~l~G~sGsGKSTL-Lr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~   93 (363)
T TIGR01186        15 AIAKGEIFVIMGLSGSGKSTT-VRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS   93 (363)
T ss_pred             EEcCCCEEEEECCCCChHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence            478999999999999999999 99999999999999999998654321   2    457899998888777667665443


Q ss_pred             HHHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567          212 IADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR  260 (440)
Q Consensus       212 ~i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~  260 (440)
                      ....+.       .   ..-++.+-++......+ .++++  |++|+...+|++                     ..+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-~~LSG--Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~  170 (363)
T TIGR01186        94 LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSG--GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQD  170 (363)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            321110       0   00122333444444443 56666  888998889887                     23444


Q ss_pred             HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      .|..+.++.+.|||+++|..+.+-.+++.......|+....
T Consensus       171 ~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~  211 (363)
T TIGR01186       171 ELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV  211 (363)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence            44455556799999999998765544554455555655433

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.25  E-value=2.5e-11  Score=114.46  Aligned_cols=152  Identities=18%  Similarity=0.239  Sum_probs=106.8

Q ss_pred             cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce
Q 013567          125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL  198 (440)
Q Consensus       125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l  198 (440)
                      .|-|-..|+.+- =-|++|++++|.|++|+||||| |++++++..+..|.+++++++....      .+.+++|+.++.+
T Consensus        13 yp~~~~aL~~Vn-l~I~~GE~VaiIG~SGaGKSTL-LR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~   90 (258)
T COG3638          13 YPGGHQALKDVN-LEINQGEMVAIIGPSGAGKSTL-LRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQF   90 (258)
T ss_pred             cCCCceeeeeEe-EEeCCCcEEEEECCCCCcHHHH-HHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccC
Confidence            445555665542 4689999999999999999999 9999999999999999999865433      2567899998877


Q ss_pred             eecCCCCHHHH------------------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHH
Q 013567          199 IVCQPDNGEMA------------------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARL  254 (440)
Q Consensus       199 ~i~~~~~~ee~------------------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~  254 (440)
                      .+.+..++-+.                        ...++.+-+     +=+.|..-  .....++|  |++|++.+||+
T Consensus        91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLer-----vgi~~~A~--qra~~LSG--GQQQRVaIARa  161 (258)
T COG3638          91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALER-----VGILDKAY--QRASTLSG--GQQQRVAIARA  161 (258)
T ss_pred             CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHH-----cCcHHHHH--HHhccCCc--chhHHHHHHHH
Confidence            66655443221                        111111110     11222211  11245565  88999999998


Q ss_pred             H---------------------HHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567          255 M---------------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYY  287 (440)
Q Consensus       255 l---------------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~  287 (440)
                      +                     .+.|..|++++++.|+|||+.-|..+-...+|
T Consensus       162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~  215 (258)
T COG3638         162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYA  215 (258)
T ss_pred             HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHH
Confidence            7                     46888899999999999999999977544433

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=2.3e-11  Score=123.72  Aligned_cols=161  Identities=17%  Similarity=0.214  Sum_probs=109.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRM-  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l-  216 (440)
                      -+++|++++|.|||||||||| +++++++..+..|.++++++...+. ...+.+|+.+++..+++..++.+.+...... 
T Consensus        28 ~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~  106 (351)
T PRK11432         28 TIKQGTMVTLLGPSGCGKTTV-LRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML  106 (351)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc
Confidence            477999999999999999999 9999999999999999998765432 2346789988887777666665544321110 


Q ss_pred             ------Hh---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567          217 ------CR---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ------~~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la  266 (440)
                            ..   ..-.+++-++.+..-.+ .++++  |++|+...+|++                     .++...|..+.
T Consensus       107 ~~~~~~~~~~v~~~l~~~gl~~~~~r~~-~~LSg--Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  183 (351)
T PRK11432        107 GVPKEERKQRVKEALELVDLAGFEDRYV-DQISG--GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ  183 (351)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                  00   00112333344433332 56665  888888888887                     23444455555


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                      ++.++|+|+++|..+.+-.+++.......|+......
T Consensus       184 ~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~  220 (351)
T PRK11432        184 QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS  220 (351)
T ss_pred             HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence            6679999999999887655555555566666654443

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.24  E-value=2.8e-11  Score=120.93  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=98.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -+++|++++|.||||+||||| ++++.++..+..|.+++++......  ...+.+|+.+++..++...++.+.+.....+
T Consensus        29 ~i~~Gei~gllGpNGaGKSTL-l~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~  107 (306)
T PRK13537         29 HVQRGECFGLLGPNGAGKTTT-LRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY  107 (306)
T ss_pred             EEeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence            578999999999999999999 9999999999999999998764332  2456789988887666656666555432221


Q ss_pred             Hhc----------CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CRS----------GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~~----------~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ...          .-.+.+-+.....-. ...+++  |++|+...++++                    +..++.+....
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l  184 (306)
T PRK13537        108 FGLSAAAARALVPPLLEFAKLENKADAK-VGELSG--GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL  184 (306)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCc-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            000          000111111111111 123333  667776677665                    23444444444


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccce
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      ++.|.|||+++|..+.+...|+.......|+.
T Consensus       185 ~~~g~till~sH~l~e~~~~~d~i~il~~G~i  216 (306)
T PRK13537        185 LARGKTILLTTHFMEEAERLCDRLCVIEEGRK  216 (306)
T ss_pred             HhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence            55699999999999877655544444444443

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.23  E-value=3.3e-11  Score=123.07  Aligned_cols=160  Identities=19%  Similarity=0.239  Sum_probs=108.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC--cEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG--NAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADR  215 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~--~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~  215 (440)
                      -+++|+++.|+|||||||||| +++++++..+..  |.++++++...+. ...+.+|+.+++..+++..++.+.+.....
T Consensus        27 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~  105 (362)
T TIGR03258        27 EIEAGELLALIGKSGCGKTTL-LRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR  105 (362)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence            477999999999999999999 999999999999  9999998865432 245678999988877766677665543211


Q ss_pred             HH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHH
Q 013567          216 MC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSG  264 (440)
Q Consensus       216 l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~  264 (440)
                      ..       .   ..-.+.+-++.+..-.+ .++++  |++|+...+|++                     .++...|..
T Consensus       106 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-~~LSg--Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~  182 (362)
T TIGR03258       106 AQKMPKADIAERVADALKLVGLGDAAAHLP-AQLSG--GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA  182 (362)
T ss_pred             HcCCCHHHHHHHHHHHHHhcCCCchhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            00       0   00122333444433333 55665  888888888887                     233444445


Q ss_pred             HHHhc-CCEEEEEeccccccccccCCceeecccceeeee
Q 013567          265 NASKA-GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       265 lak~~-~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      +.++. ++|+|++||..+.+..+++.......|+.....
T Consensus       183 l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g  221 (362)
T TIGR03258       183 LHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHG  221 (362)
T ss_pred             HHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence            55555 899999999988765555555555566555443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=3e-11  Score=123.97  Aligned_cols=159  Identities=16%  Similarity=0.271  Sum_probs=109.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+++|+++.|.|||||||||| +++++++..+..|.++++++...+ +...+.+|+.+++..+++..++.+.+.......
T Consensus        41 ~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~  119 (377)
T PRK11607         41 TIYKGEIFALLGASGCGKSTL-LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD  119 (377)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence            467999999999999999999 999999999999999999886433 234567899998887777767766554321100


Q ss_pred             -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH-HHHHHHHHH
Q 013567          218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ-ALRKMSGNA  266 (440)
Q Consensus       218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~-~l~~L~~la  266 (440)
                             +   ..-.+.+-++.+....+ .++++  |++|+...+|++                    +. +...|..+.
T Consensus       120 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~-~~LSg--Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  196 (377)
T PRK11607        120 KLPKAEIASRVNEMLGLVHMQEFAKRKP-HQLSG--GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL  196 (377)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                   0   00122333444433333 56665  888888888887                    22 334455666


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      ++.++|+|+++|..+.+..+++.......|+....
T Consensus       197 ~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~  231 (377)
T PRK11607        197 ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI  231 (377)
T ss_pred             HhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence            77899999999998866555555555556655443

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.23  E-value=2.9e-11  Score=124.02  Aligned_cols=158  Identities=18%  Similarity=0.249  Sum_probs=106.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+++|++++|.||+||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+.......
T Consensus        36 ~i~~Ge~~~LlGpsGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~  114 (375)
T PRK09452         36 TINNGEFLTLLGPSGCGKTTV-LRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ  114 (375)
T ss_pred             EEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence            478999999999999999999 9999999999999999999865432 24567899888887776666655443211100


Q ss_pred             -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567          218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA  266 (440)
Q Consensus       218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la  266 (440)
                             .   ..-.+.+-++.+....| .++++  |++|+...+|++                     ..+...|..+.
T Consensus       115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p-~~LSg--Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~  191 (375)
T PRK09452        115 KTPAAEITPRVMEALRMVQLEEFAQRKP-HQLSG--GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ  191 (375)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence                   0   00122333444333333 55665  888888888887                     23444455556


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      ++.++|+|++||....+-.+++.......|+...
T Consensus       192 ~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~  225 (375)
T PRK09452        192 RKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ  225 (375)
T ss_pred             HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            6679999999999876554455444555555543

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.23  E-value=3e-11  Score=120.42  Aligned_cols=156  Identities=15%  Similarity=0.224  Sum_probs=96.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -+++|++++|.|||||||||| ++++.++..+..|.+++++......  .+.+.+|+.+++..++...++.+.+.....+
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   93 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTT-IRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL   93 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence            578999999999999999999 9999999999999999988654322  2455688888876666555665544322111


Q ss_pred             Hh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ..          ..-.+.+-++....-. ...+++  |++|+...++++                    ...+..+....
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  170 (302)
T TIGR01188        94 YGLPKDEAEERAEELLELFELGEAADRP-VGTYSG--GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL  170 (302)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhCCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            00          0001111122211111 134444  777777777766                    23333433333


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccce
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      ++.|.|||+++|..+.+...++.......|+.
T Consensus       171 ~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i  202 (302)
T TIGR01188       171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRI  202 (302)
T ss_pred             HhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence            44589999999998876554444434444443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.21  E-value=6e-11  Score=113.71  Aligned_cols=138  Identities=20%  Similarity=0.224  Sum_probs=87.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC------hhhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD------PSYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~------~~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      =+++|++++|.|||||||||| ++++.+...+..|.+++++.....      ..+.+.+++.+++..++...++.+.+..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~  100 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTL-LRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF  100 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHH
Confidence            478999999999999999999 999999999999999998865322      1234567777776555544454443322


Q ss_pred             ----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          213 ----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       213 ----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                                      +..++.     .+-++....-. ..++++  |++|+...++++                     
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~  172 (235)
T cd03261         101 PLREHTRLSEEEIREIVLEKLE-----AVGLRGAEDLY-PAELSG--GMKKRVALARALALDPELLLYDEPTAGLDPIAS  172 (235)
T ss_pred             HHhhccCCCHHHHHHHHHHHHH-----HcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence                            111111     11122111111 134554  777777777776                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      ..++..|..+.++.+.|||+++|..+.+..
T Consensus       173 ~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~  202 (235)
T cd03261         173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFA  202 (235)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence            223344444444468999999999876543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.21  E-value=6.3e-11  Score=120.69  Aligned_cols=153  Identities=19%  Similarity=0.284  Sum_probs=101.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++++....       ....+.+++.+++..+++..++.+.+.
T Consensus        20 ~i~~Ge~~~l~G~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   98 (352)
T PRK11144         20 TLPAQGITAIFGRSGAGKTSL-INAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR   98 (352)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence            367999999999999999999 999999999999999998865432       123456888888776666556654433


Q ss_pred             H---------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          212 I---------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       212 ~---------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                      .         +.+++.     .+-++.+....+ .++++  |++|+...+|++                     ..++..
T Consensus        99 ~~~~~~~~~~~~~~l~-----~~gl~~~~~~~~-~~LSg--Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~  170 (352)
T PRK11144         99 YGMAKSMVAQFDKIVA-----LLGIEPLLDRYP-GSLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY  170 (352)
T ss_pred             hhhhhhhHHHHHHHHH-----HcCCchhhhCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            2         122222     222233222222 45554  778888888776                     233444


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      |..+.++.+.|||+++|..+.+..+++.......|+...
T Consensus       171 L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~  209 (352)
T PRK11144        171 LERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA  209 (352)
T ss_pred             HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence            555556679999999999876655555545555555543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.21  E-value=3.8e-11  Score=122.21  Aligned_cols=153  Identities=18%  Similarity=0.244  Sum_probs=103.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH------
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI------  212 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~------  212 (440)
                      +.+|++++|.|||||||||| +++++++..+..|.++++++..... ...+.+|+.+++..+++..++.+.+..      
T Consensus        25 i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~  103 (353)
T PRK10851         25 IPSGQMVALLGPSGSGKTTL-LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLP  103 (353)
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence            67899999999999999999 9999999999999999998764332 234568888887666655555444332      


Q ss_pred             -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHH
Q 013567          213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQA  258 (440)
Q Consensus       213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~  258 (440)
                                   +..++     +.+-++.+..-.+ .++++  |++|+...+|++                     ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l-----~~~~L~~~~~~~~-~~LSg--Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l  175 (353)
T PRK10851        104 RRERPNAAAIKAKVTQLL-----EMVQLAHLADRYP-AQLSG--GQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL  175 (353)
T ss_pred             cccCCCHHHHHHHHHHHH-----HHcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence                         11121     1222333333332 55555  888888888887                     234


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      ...|..+.++.++|+|+++|..+.+..+++.......|+....
T Consensus       176 ~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~  218 (353)
T PRK10851        176 RRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA  218 (353)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            4445555566799999999998876555555555555655433

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.20  E-value=5.1e-11  Score=120.73  Aligned_cols=156  Identities=14%  Similarity=0.129  Sum_probs=96.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -+++|++++|.||||+||||| ++++.++..+..|.+++++......  ...+.+|+.+++..++...++.+.+.....+
T Consensus        63 ~i~~Gei~gLlGpNGaGKSTL-l~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~  141 (340)
T PRK13536         63 TVASGECFGLLGPNGAGKSTI-ARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY  141 (340)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH
Confidence            378999999999999999999 9999999999999999998764332  2456688888877666666665554432211


Q ss_pred             Hhc----------CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CRS----------GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~~----------~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ...          .-.+.+-++....-. ...+++  |++|+...++++                    ...+..+....
T Consensus       142 ~~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~LS~--G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l  218 (340)
T PRK13536        142 FGMSTREIEAVIPSLLEFARLESKADAR-VSDLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL  218 (340)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhCCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            000          001111122111111 133443  667777777765                    23333333333


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccce
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      ++.+.|||+++|..+.+...|+.......|+.
T Consensus       219 ~~~g~tilisSH~l~e~~~~~d~i~il~~G~i  250 (340)
T PRK13536        219 LARGKTILLTTHFMEEAERLCDRLCVLEAGRK  250 (340)
T ss_pred             HhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence            44699999999999877654444333333433

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.20  E-value=1.7e-11  Score=112.63  Aligned_cols=56  Identities=29%  Similarity=0.487  Sum_probs=47.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---Chhhhhhhcccc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDV  195 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~  195 (440)
                      -||+|.++.|.||||+||||| |.++.++.+.+.|.+++++.+..   ...+++.+.+--
T Consensus        23 ~i~~g~iTs~IGPNGAGKSTL-LS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILk   81 (252)
T COG4604          23 DIPKGGITSIIGPNGAGKSTL-LSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILK   81 (252)
T ss_pred             eecCCceeEEECCCCccHHHH-HHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHH
Confidence            578999999999999999999 99999999999999999987643   334676665543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.20  E-value=5.1e-11  Score=112.69  Aligned_cols=137  Identities=15%  Similarity=0.198  Sum_probs=87.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++++....  .    .+.+.+++.+++..++...++.+.+..
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  103 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTF-LKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAF  103 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHH
Confidence            478999999999999999999 999999999999999998875322  1    134567887777655554455443322


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                                     +.++++     .+-++...... ..++++  |++|+...++++                    ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  175 (216)
T TIGR00960       104 PLRIIGVPPRDANERVSAALE-----KVGLEGKAHAL-PMQLSG--GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR  175 (216)
T ss_pred             HHHhcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence                           111111     11122222222 134444  777777777766                    22


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      .+..+....++.+.|||+++|..+.+.
T Consensus       176 ~l~~~l~~~~~~~~tii~vsH~~~~~~  202 (216)
T TIGR00960       176 DIMRLFEEFNRRGTTVLVATHDINLVE  202 (216)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            333333333445899999999987554

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.19  E-value=6.9e-11  Score=111.30  Aligned_cols=141  Identities=21%  Similarity=0.263  Sum_probs=102.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccccceeecCCCCHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVENLIVCQPDNGEMALEIAD  214 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~~l~i~~~~~~ee~l~~i~  214 (440)
                      -+++|+++.|.|+||+||||| ++.+.++.++..|.+.+++++.....    ....+++.++.-.+++..+++|.+....
T Consensus        25 ~v~~Geiv~llG~NGaGKTTl-Lkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~  103 (237)
T COG0410          25 EVERGEIVALLGRNGAGKTTL-LKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA  103 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhh
Confidence            478999999999999999999 99999999998999999998765432    3345778888888888888888877543


Q ss_pred             HHHhcCCcceEEEecccccCCc---------hhhcccchhhhHHHHHHHH---------------------HHHHHHHHH
Q 013567          215 RMCRSGAIDLICVDSVSALTPR---------AEIEGEIGMQQIGLQARLM---------------------SQALRKMSG  264 (440)
Q Consensus       215 ~l~~~~~~~lvVIDsl~~l~~~---------~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~  264 (440)
                      ...+......-.+|.+-.++|+         ..++|  |++|+...+|++                     .+++..++.
T Consensus       104 ~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSG--GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~  181 (237)
T COG0410         104 YARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE  181 (237)
T ss_pred             hcccccccccccHHHHHHHChhHHHHhcCcccCCCh--HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence            3222111112225666666652         12333  777887777776                     466777777


Q ss_pred             HHHhcCCEEEEEeccccc
Q 013567          265 NASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       265 lak~~~~tVI~inhl~~~  282 (440)
                      +.++.++||+++-|....
T Consensus       182 l~~~~g~tIlLVEQn~~~  199 (237)
T COG0410         182 LRKEGGMTILLVEQNARF  199 (237)
T ss_pred             HHHcCCcEEEEEeccHHH
Confidence            777778999999998654

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.19  E-value=1.3e-10  Score=111.53  Aligned_cols=138  Identities=17%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++++.....      .+.+.+++.+++..++...++.+.+..
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  101 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTL-LRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS  101 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHh
Confidence            478999999999999999999 9999999988899999988653321      234567777776655544454443321


Q ss_pred             -----------------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          213 -----------------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       213 -----------------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                                             +..++..     +-++...... ..++++  |++|+...++++              
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~  173 (241)
T cd03256         102 GRLGRRSTWRSLFGLFPKEEKQRALAALER-----VGLLDKAYQR-ADQLSG--GQQQRVAIARALMQQPKLILADEPVA  173 (241)
T ss_pred             hhcccchhhhhhcccCcHHHHHHHHHHHHH-----cCChhhhCCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCccc
Confidence                                   1111111     1111111111 134443  777777777766              


Q ss_pred             -------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 -------SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 -------~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                             ..+...|..++++.+.|||+++|..+.+..
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~  210 (241)
T cd03256         174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE  210 (241)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence                   223344444445568999999999876543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.19  E-value=6.4e-11  Score=121.34  Aligned_cols=153  Identities=16%  Similarity=0.262  Sum_probs=102.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIA----  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i----  213 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..++...++.+.+...    
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTL-L~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~  103 (369)
T PRK11000         25 DIHEGEFVVFVGPSGCGKSTL-LRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  103 (369)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence            467999999999999999999 9999999999999999988754322 2345688888877666655655544321    


Q ss_pred             -----------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          214 -----------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       214 -----------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                 .+++     +.+-++.+.... ..++++  |++|+...+|++                     ..+...
T Consensus       104 ~~~~~~~~~~~~~~l-----~~lgL~~~~~~~-~~~LSg--Gq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~  175 (369)
T PRK11000        104 GAKKEEINQRVNQVA-----EVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE  175 (369)
T ss_pred             CCCHHHHHHHHHHHH-----HHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence                       1111     122233222222 245555  888888888877                     223344


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      |..+.++.+.|||+++|..+.+..+++.......|+...
T Consensus       176 L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~  214 (369)
T PRK11000        176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  214 (369)
T ss_pred             HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            455556679999999999876655555555555555543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.18  E-value=1.3e-10  Score=113.57  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=117.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMA--  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~--  209 (440)
                      -++.|+|+.|.|-+||||||| +++++++..+..|.+++++++....       .+.+++++.++++-+.+..++.+.  
T Consensus        50 ~v~~GeIfViMGLSGSGKSTL-vR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~  128 (386)
T COG4175          50 DVEEGEIFVIMGLSGSGKSTL-VRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVA  128 (386)
T ss_pred             eecCCeEEEEEecCCCCHHHH-HHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhh
Confidence            478899999999999999999 9999999999999999999975433       156678999999888776665443  


Q ss_pred             -------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          210 -------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       210 -------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                                   .+.+.+.     +++|-++.....+| .+++|  |++|+...||++                     
T Consensus       129 fGLev~Gv~~~er~~~a~~~-----l~~VgL~~~~~~yp-~eLSG--GMqQRVGLARAla~~~~IlLMDEaFSALDPLIR  200 (386)
T COG4175         129 FGLEVQGVPKAEREERALEA-----LELVGLEGYADKYP-NELSG--GMQQRVGLARALANDPDILLMDEAFSALDPLIR  200 (386)
T ss_pred             cceeecCCCHHHHHHHHHHH-----HHHcCchhhhhcCc-ccccc--hHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence                         2223332     45777888888886 88888  899999999987                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEE
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVR  306 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~r  306 (440)
                      .+.=..|..+-++++.|||||+|.-++--..-+....+.+|..+.......
T Consensus       201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~e  251 (386)
T COG4175         201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEE  251 (386)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence            233355677778899999999999764311112334455666554444333

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.18  E-value=6.8e-11  Score=111.89  Aligned_cols=136  Identities=19%  Similarity=0.279  Sum_probs=85.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------h-hhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------S-YSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~-~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.+++++......      . +.+.+++.+++..++...++.+.+.
T Consensus        26 ~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~  104 (218)
T cd03255          26 SIEKGEFVAIVGPSGSGKSTL-LNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE  104 (218)
T ss_pred             EEcCCCEEEEEcCCCCCHHHH-HHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHH
Confidence            478999999999999999999 9999999999999999988653321      1 2345777777655555445544332


Q ss_pred             HH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          212 IA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       212 ~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                      ..               ..++.     .+-++...... ...+++  |++|+...++++                     
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (218)
T cd03255         105 LPLLLAGVPKKERRERAEELLE-----RVGLGDRLNHY-PSELSG--GQQQRVAIARALANDPKIILADEPTGNLDSETG  176 (218)
T ss_pred             HHHhhcCCCHHHHHHHHHHHHH-----HcCCchhhhcC-hhhcCH--HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence            21               11111     11122211111 134443  777777777765                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ..+...|..+.++.+.|||+++|..+.+
T Consensus       177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~  204 (218)
T cd03255         177 KEVMELLRELNKEAGTTIVVVTHDPELA  204 (218)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence            2333444444444689999999997654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.18  E-value=1.6e-10  Score=111.16  Aligned_cols=67  Identities=19%  Similarity=0.371  Sum_probs=50.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNG  206 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~  206 (440)
                      =+++|++++|.|||||||||| ++++++...+..|.+++++.....  .    .+.+.+++.+++..++...++
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   96 (243)
T TIGR02315        24 NINPGEFVAIIGPSGAGKSTL-LRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV   96 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccH
Confidence            468999999999999999999 999999999999999998864321  1    134557777766544443343

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.18  E-value=1.3e-10  Score=109.43  Aligned_cols=138  Identities=17%  Similarity=0.221  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~-----  212 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..++...++.+.+..     
T Consensus        20 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~   98 (211)
T cd03298          20 TFAQGEITAIVGPSGSGKSTL-LNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG   98 (211)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence            578999999999999999999 9999999999999999988753221 123456776665544443344332221     


Q ss_pred             ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                +..+++     .+-++...... ...+++  |++++...++++                     ..++..
T Consensus        99 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~  170 (211)
T cd03298          99 LKLTAEDRQAIEVALA-----RVGLAGLEKRL-PGELSG--GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL  170 (211)
T ss_pred             cCccHHHHHHHHHHHH-----HcCCHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                      111111     11112111111 133333  666666666665                     223334


Q ss_pred             HHHHHHhcCCEEEEEecccccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      |..+.++.++|||+++|..+.+..
T Consensus       171 l~~~~~~~~~tii~~sH~~~~~~~  194 (211)
T cd03298         171 VLDLHAETKMTVLMVTHQPEDAKR  194 (211)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHh
Confidence            444445569999999999876543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.18  E-value=9.2e-11  Score=120.64  Aligned_cols=158  Identities=18%  Similarity=0.275  Sum_probs=110.0

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chh--hhhhhccccccee
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPS--YSKALGVDVENLI  199 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~--~a~~lGv~~~~l~  199 (440)
                      ++| |+-.+|.+- =-+++|+|++|.|.||+||||| ++++.++++|+.|.+++++....  ++.  .+..+|+..|++.
T Consensus        13 ~f~-~~~And~V~-l~v~~GeIHaLLGENGAGKSTL-m~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~   89 (501)
T COG3845          13 RFP-GVVANDDVS-LSVKKGEIHALLGENGAGKSTL-MKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM   89 (501)
T ss_pred             EcC-CEEecCcee-eeecCCcEEEEeccCCCCHHHH-HHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc
Confidence            344 666777653 4789999999999999999999 99999999999999999998642  222  4445677666655


Q ss_pred             ecCCCCHH-------------------------------------------------HHHHHHHHHHhcCCcceEEEecc
Q 013567          200 VCQPDNGE-------------------------------------------------MALEIADRMCRSGAIDLICVDSV  230 (440)
Q Consensus       200 i~~~~~~e-------------------------------------------------e~l~~i~~l~~~~~~~lvVIDsl  230 (440)
                      +++..|+.                                                 |-.++++.+.  .+.+++++|..
T Consensus        90 Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy--r~a~iLILDEP  167 (501)
T COG3845          90 LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY--RGARLLILDEP  167 (501)
T ss_pred             cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh--cCCCEEEEcCC
Confidence            44433321                                                 1133333332  36788999998


Q ss_pred             cccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          231 SALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       231 ~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                      ++...+.+.                .+.+..|. .+++.|.|||+|||--+++-..++...+.-.|+....+.
T Consensus       168 TaVLTP~E~----------------~~lf~~l~-~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         168 TAVLTPQEA----------------DELFEILR-RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             cccCCHHHH----------------HHHHHHHH-HHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            887753332                23333333 456789999999998887776677777777777665554

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.17  E-value=1.2e-10  Score=118.70  Aligned_cols=152  Identities=18%  Similarity=0.267  Sum_probs=99.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.++++++....       ..+.+.+++.+++..++...++.+.+.
T Consensus        19 ~i~~Gei~~l~G~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   97 (354)
T TIGR02142        19 TLPGQGVTAIFGRSGSGKTTL-IRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR   97 (354)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence            367999999999999999999 999999999999999998875422       123456788877766665556554443


Q ss_pred             H-------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567          212 I-------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ  257 (440)
Q Consensus       212 ~-------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~  257 (440)
                      .             +.+++.     .+-++...... ..++++  |++|+...+|++                     ..
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~-~~~LSg--GqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~  169 (354)
T TIGR02142        98 YGMKRARPSERRISFERVIE-----LLGIGHLLGRL-PGRLSG--GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE  169 (354)
T ss_pred             HHhhccChhHHHHHHHHHHH-----HcCChhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence            2             111111     22223222222 245554  788888888876                     23


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      ++..|..+.++.+.|||+++|..+.+..+++.......|+..
T Consensus       170 l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~  211 (354)
T TIGR02142       170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA  211 (354)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence            344455555566999999999987665445544455555544

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.17  E-value=9.2e-11  Score=110.69  Aligned_cols=138  Identities=18%  Similarity=0.287  Sum_probs=84.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~-----  212 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..+....++.+.+..     
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  100 (213)
T cd03259          22 TVEPGEFLALLGPSGCGKTTL-LRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR  100 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc
Confidence            478999999999999999999 9999999999999999988653221 123456776665544433344333221     


Q ss_pred             ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                +..++.     .+-++....-. ..++++  |++|+...++++                     ..++..
T Consensus       101 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~  172 (213)
T cd03259         101 GVPKAEIRARVRELLE-----LVGLEGLLNRY-PHELSG--GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE  172 (213)
T ss_pred             CCCHHHHHHHHHHHHH-----HcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                      111111     11122111111 134443  677777777765                     223333


Q ss_pred             HHHHHHhcCCEEEEEecccccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      |..+.++.+.|||+++|..+.+..
T Consensus       173 l~~~~~~~~~tii~~sH~~~~~~~  196 (213)
T cd03259         173 LKELQRELGITTIYVTHDQEEALA  196 (213)
T ss_pred             HHHHHHHcCCEEEEEecCHHHHHH
Confidence            444444568999999999765443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.17  E-value=1.5e-10  Score=109.95  Aligned_cols=138  Identities=17%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEI----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~----  212 (440)
                      -+.+|++++|.|+||+||||| ++++++...+..|.++++++....  ..+.+.+++.+++..+....++.+.+..    
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  100 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTT-IKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL  100 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHH
Confidence            567999999999999999999 999999999999999998865322  1234557777776554444444333321    


Q ss_pred             -----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHH
Q 013567          213 -----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALR  260 (440)
Q Consensus       213 -----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~  260 (440)
                                 +..++.     .+-++...... ..++++  |++|+...++++                    . ....
T Consensus       101 ~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~  172 (220)
T cd03265         101 YGVPGAERRERIDELLD-----FVGLLEAADRL-VKTYSG--GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE  172 (220)
T ss_pred             cCCCHHHHHHHHHHHHH-----HcCCHHHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence                       111111     11122211111 134443  666766666665                    2 2333


Q ss_pred             HHHHHHHhcCCEEEEEecccccccc
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      .|..+.++.+.+||+++|..+.+..
T Consensus       173 ~l~~~~~~~~~tvi~~tH~~~~~~~  197 (220)
T cd03265         173 YIEKLKEEFGMTILLTTHYMEEAEQ  197 (220)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            3444445568999999999875543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.16  E-value=1.2e-10  Score=116.16  Aligned_cols=146  Identities=15%  Similarity=0.156  Sum_probs=89.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.+++++......  .+.+.+|+.+++..+....++.+.+......
T Consensus        26 ~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  104 (303)
T TIGR01288        26 TIARGECFGLLGPNGAGKSTI-ARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRY  104 (303)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHH
Confidence            478999999999999999999 9999999999999999988653222  2345678887776555555555443321110


Q ss_pred             Hh-------c---CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CR-------S---GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~-------~---~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ..       .   .-.+.+-++...... ...+++  |++|+...++++                    ...+..+....
T Consensus       105 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  181 (303)
T TIGR01288       105 FGMSTREIEAVIPSLLEFARLESKADVR-VALLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL  181 (303)
T ss_pred             cCCCHHHHHHHHHHHHHHCCChhHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            00       0   001111122111111 134444  777777777766                    23333333333


Q ss_pred             HhcCCEEEEEeccccccccccC
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~  288 (440)
                      ++.+.|||+++|..+.+...++
T Consensus       182 ~~~g~til~~sH~~~~~~~~~d  203 (303)
T TIGR01288       182 LARGKTILLTTHFMEEAERLCD  203 (303)
T ss_pred             HhCCCEEEEECCCHHHHHHhCC
Confidence            4468999999999876654443

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.16  E-value=1.2e-10  Score=110.60  Aligned_cols=136  Identities=19%  Similarity=0.236  Sum_probs=83.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA-----  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-----  213 (440)
                      -|++|++++|.|||||||||| ++++.+...+..|.+++++.....  +.+.+++.+++..++...++.+.+...     
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  102 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTL-LRIIAGLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG  102 (220)
T ss_pred             EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcC
Confidence            477999999999999999999 999999998889999998764321  234566666655444444444433211     


Q ss_pred             ----------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHHHH
Q 013567          214 ----------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALRKM  262 (440)
Q Consensus       214 ----------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~~L  262 (440)
                                ..+++     .+-++...... ...+++  |++|+...++++                    . .++..|
T Consensus       103 ~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l  174 (220)
T cd03293         103 VPKAEARERAEELLE-----LVGLSGFENAY-PHQLSG--GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL  174 (220)
T ss_pred             CCHHHHHHHHHHHHH-----HcCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence                      11111     11112111111 133443  667777777765                    2 233334


Q ss_pred             HHHHHhcCCEEEEEecccccccc
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      ..+.++.+.|||+++|..+.+..
T Consensus       175 ~~~~~~~~~tiii~sH~~~~~~~  197 (220)
T cd03293         175 LDIWRETGKTVLLVTHDIDEAVF  197 (220)
T ss_pred             HHHHHHcCCEEEEEecCHHHHHH
Confidence            44445668999999999875543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.16  E-value=1.7e-10  Score=108.33  Aligned_cols=137  Identities=17%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccccccee-ecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLI-VCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~-i~~~~~~ee~l~~-----  212 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++++......+.+.+++.+++.. .....++.+.+..     
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~  100 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTL-AKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL  100 (205)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc
Confidence            478999999999999999999 999999999999999998875433334456777666531 1112233332221     


Q ss_pred             ------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          213 ------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       213 ------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                            +.++++.     +-++....-. ..++++  |++|+...+|++                    .+.+..+....
T Consensus       101 ~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  172 (205)
T cd03226         101 DAGNEQAETVLKD-----LDLYALKERH-PLSLSG--GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL  172 (205)
T ss_pred             CccHHHHHHHHHH-----cCCchhcCCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                  1122211     1122211111 134443  677777777765                    23333333333


Q ss_pred             HhcCCEEEEEeccccccc
Q 013567          267 SKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig  284 (440)
                      ++.+.|||+++|..+.+.
T Consensus       173 ~~~~~tii~~sH~~~~~~  190 (205)
T cd03226         173 AAQGKAVIVITHDYEFLA  190 (205)
T ss_pred             HHCCCEEEEEeCCHHHHH
Confidence            345899999999987554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.15  E-value=3.2e-10  Score=103.74  Aligned_cols=126  Identities=18%  Similarity=0.220  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHH-------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMA-------  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~-------  209 (440)
                      =+++|+++.|.|+||+||||| ++++++...+..|.++++++....  ..+.+.+++.+++..+....++.+.       
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~  100 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTL-IKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM  100 (173)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence            468999999999999999999 999999998889999998865432  2334567777777655544444433       


Q ss_pred             ---HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          210 ---LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       210 ---l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                         +.+++.+.  .+++++++|....-....             ..+.+.+.   |..+.++ +.|||+++|....+.
T Consensus       101 ~qrv~laral~--~~p~illlDEPt~~LD~~-------------~~~~l~~~---l~~~~~~-g~tiii~th~~~~~~  159 (173)
T cd03230         101 KQRLALAQALL--HDPELLILDEPTSGLDPE-------------SRREFWEL---LRELKKE-GKTILLSSHILEEAE  159 (173)
T ss_pred             HHHHHHHHHHH--cCCCEEEEeCCccCCCHH-------------HHHHHHHH---HHHHHHC-CCEEEEECCCHHHHH
Confidence               23344443  478999999987766311             11122333   3334444 899999999876543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.15  E-value=1.4e-10  Score=119.86  Aligned_cols=155  Identities=18%  Similarity=0.171  Sum_probs=98.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEI---  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~---  212 (440)
                      -+++|++++|.||||+||||| ++++.++.++..|.++++++....   ..+++++|+.+++..+....++.+.+..   
T Consensus        25 ~i~~Geiv~liGpNGaGKSTL-Lk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~  103 (402)
T PRK09536         25 SVREGSLVGLVGPNGAGKTTL-LRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRT  103 (402)
T ss_pred             EECCCCEEEEECCCCchHHHH-HHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccc
Confidence            478999999999999999999 999999999999999999876443   2356678887776554434444333221   


Q ss_pred             ----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          213 ----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       213 ----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                                      +..+++     .+-+..+..-. ..++++  |++|+...+|++                    .
T Consensus       104 ~~~~~~~~~~~~~~~~v~~~le-----~vgl~~~~~~~-~~~LSg--GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~  175 (402)
T PRK09536        104 PHRSRFDTWTETDRAAVERAME-----RTGVAQFADRP-VTSLSG--GERQRVLLARALAQATPVLLLDEPTASLDINHQ  175 (402)
T ss_pred             hhcccccCCCHHHHHHHHHHHH-----HcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence                            111111     11121111111 134444  777777777776                    2


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      ..++.+...+.+.+.|||+++|..+.+...++.......|+.+...
T Consensus       176 ~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G  221 (402)
T PRK09536        176 VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG  221 (402)
T ss_pred             HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence            2333333333346899999999988776556655556666655443

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.14  E-value=3.1e-10  Score=105.85  Aligned_cols=123  Identities=22%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE-----  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~-----  211 (440)
                      =+++|++++|.||||+||||| ++++++..  .+..|.++++++......+.+.+++.+++..++...++.+.+.     
T Consensus        31 ~i~~Ge~~~l~G~nGsGKStL-l~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~  109 (194)
T cd03213          31 KAKPGELTAIMGPSGAGKSTL-LNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL  109 (194)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence            478999999999999999999 99999999  8889999999875443334456777777655554445444322     


Q ss_pred             ------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          212 ------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       212 ------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                                  +++.++  .+++++++|....-....            . .+.+.+.++   .+ ++.+.|||+++|.
T Consensus       110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~~------------~-~~~l~~~l~---~~-~~~~~tiii~sh~  170 (194)
T cd03213         110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDSS------------S-ALQVMSLLR---RL-ADTGRTIICSIHQ  170 (194)
T ss_pred             ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCHH------------H-HHHHHHHHH---HH-HhCCCEEEEEecC
Confidence                        222222  367899999877655310            1 112223332   33 3358999999998


Q ss_pred             cc
Q 013567          280 RY  281 (440)
Q Consensus       280 ~~  281 (440)
                      ..
T Consensus       171 ~~  172 (194)
T cd03213         171 PS  172 (194)
T ss_pred             ch
Confidence            74

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.14  E-value=1.9e-10  Score=108.20  Aligned_cols=70  Identities=20%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -+++|+++.|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+....++.+.
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   92 (208)
T cd03268          22 HVKKGEIYGFLGPNGAGKTTT-MKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN   92 (208)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence            467999999999999999999 999999999999999998875432 2234457777766555444454443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.13  E-value=3.6e-10  Score=108.09  Aligned_cols=138  Identities=19%  Similarity=0.278  Sum_probs=85.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -|++|++++|.|||||||||| ++++++...+..|.++++++.....      .+.+.+++.+++..++...++.+.+..
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~  105 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL  105 (233)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHH
Confidence            478999999999999999999 9999999999999999988754321      124567777777655544454443321


Q ss_pred             H---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 A---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                      .               ..+++     .+-++...... ...+++  |++|+...++++                    ..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (233)
T cd03258         106 PLEIAGVPKAEIEERVLELLE-----LVGLEDKADAY-PAQLSG--GQKQRVGIARALANNPKVLLCDEATSALDPETTQ  177 (233)
T ss_pred             HHHHcCCCHHHHHHHHHHHHH-----HCCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence            1               11111     11122111111 133443  666776667665                    22


Q ss_pred             -HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          258 -ALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       258 -~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                       +...|..+.++.+.|||+++|..+.+..
T Consensus       178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~  206 (233)
T cd03258         178 SILALLRDINRELGLTIVLITHEMEVVKR  206 (233)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence             3333444445568999999999775543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.13  E-value=1.4e-10  Score=109.69  Aligned_cols=70  Identities=19%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.+++++.....  ..+.+.+++.+++..++...++.+.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   98 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTT-LRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN   98 (218)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence            478999999999999999999 999999999999999998865332  1234567877777655554455443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.13  E-value=1.7e-10  Score=119.05  Aligned_cols=157  Identities=16%  Similarity=0.207  Sum_probs=100.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h----hhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S----YSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~----~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| ++++.++..+..|.++++++....  . .    +.+.+|+.+++..++...++.+.+.
T Consensus        50 ~i~~Gei~~LvG~NGsGKSTL-Lr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~  128 (400)
T PRK10070         50 AIEEGEIFVIMGLSGSGKSTM-VRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA  128 (400)
T ss_pred             EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHH
Confidence            478999999999999999999 999999999999999999875432  1 1    1246888888776666556655443


Q ss_pred             HHHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567          212 IADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR  260 (440)
Q Consensus       212 ~i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~  260 (440)
                      ....+.       .   ..-.+.+-++....-.+ .++++  |++|+...+|++                     ..+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-~~LSg--Gq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~  205 (400)
T PRK10070        129 FGMELAGINAEERREKALDALRQVGLENYAHSYP-DELSG--GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQD  205 (400)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-ccCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence            211100       0   00012222333222222 45555  888888888877                     23333


Q ss_pred             HHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      .|..+.++.+.|||+++|..+.+..+++.......|+..
T Consensus       206 ~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~  244 (400)
T PRK10070        206 ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV  244 (400)
T ss_pred             HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            444444567999999999987665444444445555543

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.13  E-value=1.9e-10  Score=108.52  Aligned_cols=137  Identities=20%  Similarity=0.263  Sum_probs=84.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++++.....      .+.+.+++.+++..++...++.+.+..
T Consensus        23 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~  101 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTL-LKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF  101 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence            467999999999999999999 9999999999999999988754321      134567777776555544444433221


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                                     +..++..     +-++...... ..++++  |++|+...++++                    .+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  173 (214)
T cd03292         102 ALEVTGVPPREIRKRVPAALEL-----VGLSHKHRAL-PAELSG--GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW  173 (214)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHH-----cCCHHHhhCC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence                           1111111     1112111111 133443  667776666665                    22


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      .+..+....++.+.|||+++|....+.
T Consensus       174 ~~~~~l~~~~~~~~tiiivtH~~~~~~  200 (214)
T cd03292         174 EIMNLLKKINKAGTTVVVATHAKELVD  200 (214)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            333333333345899999999876554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.13  E-value=2.3e-10  Score=107.71  Aligned_cols=68  Identities=21%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      +.+|++++|.|||||||||| ++++++...+..|.++++++.... .+.+.+++.+++..+....++.+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~   90 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTT-IRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQ   90 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHH
Confidence            67999999999999999999 999999999999999998864322 334456766666544444444443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.13  E-value=2.6e-10  Score=107.50  Aligned_cols=138  Identities=16%  Similarity=0.257  Sum_probs=83.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~-----  212 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++..... ...+.+++.+++..+....++.+.+..     
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  100 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTT-LRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR  100 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc
Confidence            478999999999999999999 9999999989999999988653221 122456666665444433344333221     


Q ss_pred             ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                +..+++     .+-++...... ..++++  |++|+...++++                     ..++..
T Consensus       101 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~  172 (213)
T cd03301         101 KVPKDEIDERVREVAE-----LLQIEHLLDRK-PKQLSG--GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE  172 (213)
T ss_pred             CCCHHHHHHHHHHHHH-----HcCCHHHHhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                      111111     11122111111 133333  666666666665                     223334


Q ss_pred             HHHHHHhcCCEEEEEecccccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      |..+.++.+.|||+++|..+.+..
T Consensus       173 l~~~~~~~~~tvi~~sH~~~~~~~  196 (213)
T cd03301         173 LKRLQQRLGTTTIYVTHDQVEAMT  196 (213)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHH
Confidence            444445568999999999865543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.13  E-value=2.1e-10  Score=108.40  Aligned_cols=137  Identities=18%  Similarity=0.230  Sum_probs=84.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~-----  212 (440)
                      -+.+|++++|.||||+||||| ++++.+...+..|.+++++...... .+.+.+++.+++..++...++.+.+..     
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~   98 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTL-LNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG   98 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc
Confidence            467999999999999999999 9999999999999999988754321 234557777766555444444332221     


Q ss_pred             ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                +.++++     .+-++...... ..++++  |++++...++++                     ..++..
T Consensus        99 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~  170 (213)
T TIGR01277        99 LKLNAEQQEKVVDAAQ-----QVGIADYLDRL-PEQLSG--GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL  170 (213)
T ss_pred             CCccHHHHHHHHHHHH-----HcCcHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence                      111111     11122111111 133333  666666666665                     223333


Q ss_pred             HHHHHHhcCCEEEEEeccccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      |..+.++.+.|||+++|..+.+.
T Consensus       171 l~~~~~~~~~tii~vsh~~~~~~  193 (213)
T TIGR01277       171 VKQLCSERQRTLLMVTHHLSDAR  193 (213)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHH
Confidence            44444456899999999987553

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.12  E-value=2.1e-10  Score=108.31  Aligned_cols=138  Identities=18%  Similarity=0.211  Sum_probs=84.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| ++++.+...+..|.+++++......      .+.+.+++.+++..++...++.+.+..
T Consensus        24 ~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  102 (214)
T TIGR02673        24 HIRKGEFLFLTGPSGAGKTTL-LKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL  102 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence            578999999999999999999 9999999988999999988654321      134567777766554444444333221


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                                     +.++++..+     ++...... ..++++  |++|+...++++                    ..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~  174 (214)
T TIGR02673       103 PLEVRGKKEREIQRRVGAALRQVG-----LEHKADAF-PEQLSG--GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE  174 (214)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcC-----ChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence                           111111111     11111111 133443  666776666665                    23


Q ss_pred             HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      .+.++....++.+.|||+++|..+.+..
T Consensus       175 ~l~~~l~~~~~~~~tii~~tH~~~~~~~  202 (214)
T TIGR02673       175 RILDLLKRLNKRGTTVIVATHDLSLVDR  202 (214)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            3333333334468999999999875543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.12  E-value=3.1e-10  Score=106.97  Aligned_cols=69  Identities=23%  Similarity=0.361  Sum_probs=52.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.+++++.....     ..+.+.+++.+++..++...++.+
T Consensus        22 ~i~~G~~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e   95 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTL-LRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLE   95 (213)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHH
Confidence            467999999999999999999 999999999999999998865421     123456777777655544444433

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.12  E-value=4.3e-10  Score=113.42  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=100.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhccccccee--ecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLI--VCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~--i~~~~~~ee~l  210 (440)
                      =|++|++++|+|+|||||||| ++++.++..+..|.++++++.....      .+.+.+++.+++..  +.+..++.+.+
T Consensus        37 ~i~~Ge~~~IvG~sGsGKSTL-l~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l  115 (327)
T PRK11308         37 TLERGKTLAVVGESGCGKSTL-ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQIL  115 (327)
T ss_pred             EECCCCEEEEECCCCCcHHHH-HHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHH
Confidence            367999999999999999999 8999999988899999998764321      13345777776642  22222332221


Q ss_pred             ----------------HHHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          211 ----------------EIADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       211 ----------------~~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                                      ..+.++++.-+     ++ .....++ .++++  |++|+...++++                  
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~g-----L~~~~~~~~p-~~LSg--Gq~QRv~iArAL~~~P~lLilDEPts~LD~  187 (327)
T PRK11308        116 EEPLLINTSLSAAERREKALAMMAKVG-----LRPEHYDRYP-HMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDV  187 (327)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHCC-----CChHHhcCCC-ccCCH--HHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence                            22233332222     22 1222232 56665  888888888887                  


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                         .+++..|..+.++.++|||+|+|....+..+++.......|+.....
T Consensus       188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g  237 (327)
T PRK11308        188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG  237 (327)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence               34555566666667999999999988765555555555566665443

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.12  E-value=3.7e-10  Score=108.60  Aligned_cols=138  Identities=22%  Similarity=0.324  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~-----  212 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.+++++...... ...+.+++.+++..++...++.+.+..     
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  102 (239)
T cd03296          24 DIPSGELVALLGPSGSGKTTL-LRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVK  102 (239)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhc
Confidence            467999999999999999999 9999999988899999987643221 123456666666544444444333221     


Q ss_pred             --------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567          213 --------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA  258 (440)
Q Consensus       213 --------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~  258 (440)
                                    +..+++     .+-++....-. ..++++  |++|+...++++                    .+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~  174 (239)
T cd03296         103 PRSERPPEAEIRAKVHELLK-----LVQLDWLADRY-PAQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE  174 (239)
T ss_pred             cccccCCHHHHHHHHHHHHH-----HcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence                          111111     11112111111 133443  677777777765                    223


Q ss_pred             H-HHHHHHHHhcCCEEEEEecccccccc
Q 013567          259 L-RKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       259 l-~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      + ..|..+.++.+.|||+++|..+.+..
T Consensus       175 l~~~l~~~~~~~~~tvii~sH~~~~~~~  202 (239)
T cd03296         175 LRRWLRRLHDELHVTTVFVTHDQEEALE  202 (239)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            3 33344444458999999999765443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.12  E-value=4.5e-10  Score=107.61  Aligned_cols=143  Identities=17%  Similarity=0.210  Sum_probs=85.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEIAD  214 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~i~  214 (440)
                      =+++|++++|.|||||||||| ++++.+...+..|.+++++......   .+ ...+++.+++..++...++.+.+....
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~  100 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTL-FNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAA  100 (236)
T ss_pred             EecCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHH
Confidence            467999999999999999999 9999999988899999988653221   12 234677777665555445544332211


Q ss_pred             HHH-----------------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567          215 RMC-----------------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------------  255 (440)
Q Consensus       215 ~l~-----------------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------------  255 (440)
                      ...                 .   ..-.+.+-++...... ..++++  |++|+...++++                   
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~  177 (236)
T cd03219         101 QARTGSGLLLARARREEREARERAEELLERVGLADLADRP-AGELSY--GQQRRLEIARALATDPKLLLLDEPAAGLNPE  177 (236)
T ss_pred             hhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            000                 0   0001111222211111 234444  777777777766                   


Q ss_pred             -HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                       ...+..+....++.+.|||+++|..+.+..
T Consensus       178 ~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~  208 (236)
T cd03219         178 ETEELAELIRELRERGITVLLVEHDMDVVMS  208 (236)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence             223333333333368999999999876543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.12  E-value=3.4e-10  Score=110.99  Aligned_cols=143  Identities=21%  Similarity=0.245  Sum_probs=87.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      =+++|++++|.||||+||||| ++++++...+..|.++++++....  .    .+.+.+++.+++..++...++.+.+..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~  107 (269)
T PRK11831         29 TVPRGKITAIMGPSGIGKTTL-LRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY  107 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHH
Confidence            478999999999999999999 999999999999999998864321  1    123457777777655554455444322


Q ss_pred             HHHHHh-----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567          213 ADRMCR-----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR  260 (440)
Q Consensus       213 i~~l~~-----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~  260 (440)
                      ......           ..-.+.+-++...... ..++++  |++|+...++++                     ..++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~  184 (269)
T PRK11831        108 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSG--GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK  184 (269)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence            100000           0001112222222222 134444  777777777766                     22333


Q ss_pred             HHHHHHHhcCCEEEEEecccccccc
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      .|..+.++.+.|||+++|....+..
T Consensus       185 ~l~~~~~~~g~tiiivsH~~~~~~~  209 (269)
T PRK11831        185 LISELNSALGVTCVVVSHDVPEVLS  209 (269)
T ss_pred             HHHHHHHhcCcEEEEEecCHHHHHH
Confidence            4444445558999999999765544

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.12  E-value=4.7e-10  Score=107.18  Aligned_cols=138  Identities=16%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEIA-  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~i-  213 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++++.....   .+ .+.+++.+++..++...++.+.+... 
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  100 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTT-FYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL  100 (232)
T ss_pred             EecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence            467999999999999999999 9999999999999999988754321   12 23577777665554444444433221 


Q ss_pred             --------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHH
Q 013567          214 --------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL  259 (440)
Q Consensus       214 --------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l  259 (440)
                                    ..++.     .+-++....-. ..++++  |++|+...++++                    .+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~  172 (232)
T cd03218         101 EIRGLSKKEREEKLEELLE-----EFHITHLRKSK-ASSLSG--GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI  172 (232)
T ss_pred             HhcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence                          11111     11122111111 133333  666666666665                    2233


Q ss_pred             HHHHHHHHhcCCEEEEEecccccccc
Q 013567          260 RKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       260 ~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      ..+.....+.+.|||+++|..+.+..
T Consensus       173 ~~~l~~~~~~~~tii~~sH~~~~~~~  198 (232)
T cd03218         173 QKIIKILKDRGIGVLITDHNVRETLS  198 (232)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            33333334468999999999865544

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.11  E-value=1.8e-10  Score=114.81  Aligned_cols=155  Identities=18%  Similarity=0.204  Sum_probs=96.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.+++++......  ...+.+|+.+++..++...++.+.+.....+
T Consensus        24 ~i~~Gei~~l~G~NGaGKTTL-l~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~  102 (301)
T TIGR03522        24 EAQKGRIVGFLGPNGAGKSTT-MKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI  102 (301)
T ss_pred             EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence            478999999999999999999 9999999999999999998754332  2445688888876666555665554432211


Q ss_pred             Hh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ..          ..-.+.+-++....-. ...+++  |++|+...++++                    .+.++.+....
T Consensus       103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~  179 (301)
T TIGR03522       103 YGMKGQLLKQRVEEMIELVGLRPEQHKK-IGQLSK--GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI  179 (301)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCchHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh
Confidence            00          0001112222221111 133443  677777777766                    23344444444


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccce
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      ++ +.|||+++|..+.+...++.......|+.
T Consensus       180 ~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i  210 (301)
T TIGR03522       180 GK-DKTIILSTHIMQEVEAICDRVIIINKGKI  210 (301)
T ss_pred             cC-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence            44 69999999999877655544334434443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.11  E-value=3.1e-10  Score=109.01  Aligned_cols=60  Identities=28%  Similarity=0.391  Sum_probs=51.3

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhcccccce
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENL  198 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l  198 (440)
                      -.+++|+.+.|+|+|||||||| +++++++.++..|.+++++.....    ..+.+++|+.++|-
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTL-~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnp   88 (235)
T COG1122          25 LEIEKGERVLLIGPNGSGKSTL-LKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNP   88 (235)
T ss_pred             EEECCCCEEEEECCCCCCHHHH-HHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECc
Confidence            5789999999999999999999 999999999999999999887552    23677788887654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.11  E-value=4.7e-10  Score=117.97  Aligned_cols=154  Identities=18%  Similarity=0.222  Sum_probs=107.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhccccccee--ecCCCCHHHHH-
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLI--VCQPDNGEMAL-  210 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~--i~~~~~~ee~l-  210 (440)
                      +.+|++++|+|++||||||| .+++.++..+.+|.+.+++.+ .+..      ..+++-+.+++-+  +.+..++.+++ 
T Consensus       314 l~~GE~lglVGeSGsGKSTl-ar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~  391 (539)
T COG1123         314 LREGETLGLVGESGSGKSTL-ARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA  391 (539)
T ss_pred             ecCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEEeCcc-cccccchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence            68999999999999999999 899999999999999998876 2221      2223333333322  12222333322 


Q ss_pred             ---------------HHHHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567          211 ---------------EIADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM-------------------  255 (440)
Q Consensus       211 ---------------~~i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l-------------------  255 (440)
                                     +.+..++.     +|-++. +...+| .+++|  |++|+...||++                   
T Consensus       392 epL~~~~~~~~~~~~~rv~~ll~-----~VgL~~~~l~ryP-~elSG--GQrQRvaIARALa~~P~lli~DEp~SaLDvs  463 (539)
T COG1123         392 EPLRIHGGGSGAERRARVAELLE-----LVGLPPEFLDRYP-HELSG--GQRQRVAIARALALEPKLLILDEPVSALDVS  463 (539)
T ss_pred             hHHhhhcccchHHHHHHHHHHHH-----HcCCCHHHHhcCc-hhcCc--chhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence                           12222222     333333 344454 78887  999999999987                   


Q ss_pred             --HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                        .++++.|+.+-++.|+|.|||+|+...+..+|+...++..|++++...
T Consensus       464 vqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~  513 (539)
T COG1123         464 VQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP  513 (539)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence              578888899999999999999999998887777777777777766663

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.11  E-value=5.2e-10  Score=102.82  Aligned_cols=127  Identities=19%  Similarity=0.324  Sum_probs=84.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEMA----  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee~----  209 (440)
                      =+++|++++|.||||+||||| ++++.+...+..|.+++++.....     ..+.+.+++.+++..+....+..+.    
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~  100 (178)
T cd03229          22 NIEAGEIVALLGPSGSGKSTL-LRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG  100 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence            468999999999999999999 999999998889999998864322     1244567777766554444344332    


Q ss_pred             --------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          210 --------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       210 --------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                              +.+++.++  .+++++++|....-....            . .   ...+..|..+.++.+.|+|+++|..+
T Consensus       101 lS~G~~qr~~la~al~--~~p~llilDEP~~~LD~~------------~-~---~~l~~~l~~~~~~~~~tiii~sH~~~  162 (178)
T cd03229         101 LSGGQQQRVALARALA--MDPDVLLLDEPTSALDPI------------T-R---REVRALLKSLQAQLGITVVLVTHDLD  162 (178)
T ss_pred             CCHHHHHHHHHHHHHH--CCCCEEEEeCCcccCCHH------------H-H---HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                    22344443  368899999877655311            1 1   12222233344445899999999987


Q ss_pred             ccc
Q 013567          282 KIG  284 (440)
Q Consensus       282 ~ig  284 (440)
                      .+.
T Consensus       163 ~~~  165 (178)
T cd03229         163 EAA  165 (178)
T ss_pred             HHH
Confidence            554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.11  E-value=4.9e-10  Score=113.17  Aligned_cols=154  Identities=16%  Similarity=0.131  Sum_probs=100.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l  210 (440)
                      =|.+|++++|+|+|||||||| ++++.++..+..|.++++++.....      .+.+.+++.+++.  .+.+..++.+.+
T Consensus        43 ~i~~Ge~~~lvG~sGsGKSTL-lk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i  121 (331)
T PRK15079         43 RLYEGETLGVVGESGCGKSTF-ARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEII  121 (331)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHH
Confidence            368999999999999999999 8999999999999999998865432      1234678877764  233334443332


Q ss_pred             H-----------------HHHHHHhcCCcceEEE-ecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          211 E-----------------IADRMCRSGAIDLICV-DSVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       211 ~-----------------~i~~l~~~~~~~lvVI-Dsl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                      .                 .+.++++     .+-+ +.+...++ .++++  |++|+...++++                 
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~l~-----~vgl~~~~~~~~p-~~LSg--G~~QRv~iArAL~~~P~llilDEPts~LD  193 (331)
T PRK15079        122 AEPLRTYHPKLSRQEVKDRVKAMML-----KVGLLPNLINRYP-HEFSG--GQCQRIGIARALILEPKLIICDEPVSALD  193 (331)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHH-----HcCCChHHhcCCc-ccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            2                 1122222     2222 12222332 56665  888888888887                 


Q ss_pred             ----HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                          .+++..|..+.++.+.|||+++|....+..+++.......|+.+..
T Consensus       194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~  243 (331)
T PRK15079        194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL  243 (331)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence                3445555555566799999999998866555555555555555443

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.11  E-value=5.3e-10  Score=100.83  Aligned_cols=133  Identities=20%  Similarity=0.261  Sum_probs=96.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chh-----hhhhhcccccceeecCCCCHHHHH--
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPS-----YSKALGVDVENLIVCQPDNGEMAL--  210 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~-----~a~~lGv~~~~l~i~~~~~~ee~l--  210 (440)
                      +.+|+-+.|+||+||||||| +-+++++-.+.++.+++.+..-.  +..     +.+++|+.++.+.+++..+..|..  
T Consensus        33 v~~Ge~vaiVG~SGSGKSTL-l~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l  111 (228)
T COG4181          33 VKRGETVAIVGPSGSGKSTL-LAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL  111 (228)
T ss_pred             ecCCceEEEEcCCCCcHHhH-HHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence            68999999999999999999 99999999999999999887533  222     567899999999887766544332  


Q ss_pred             -------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          211 -------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       211 -------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                                   ..+..++..     |-+-.-...+| .+++|  |++|+...+|++                     .
T Consensus       112 PleL~ge~~~~~~~~A~~lL~~-----vGLg~Rl~HyP-~qLSG--GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~  183 (228)
T COG4181         112 PLELRGESSADSRAGAKALLEA-----VGLGKRLTHYP-AQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATGD  183 (228)
T ss_pred             hhhhcCCccccHHHHHHHHHHH-----hCcccccccCc-cccCc--hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence                         223333221     22222222333 56666  778888888876                     3


Q ss_pred             HHHHHHHHHHHhcCCEEEEEecccc
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      ++..-|-.+.++.|.|.|+++|+..
T Consensus       184 ~iaDLlF~lnre~G~TlVlVTHD~~  208 (228)
T COG4181         184 KIADLLFALNRERGTTLVLVTHDPQ  208 (228)
T ss_pred             HHHHHHHHHhhhcCceEEEEeCCHH
Confidence            5556667778899999999999864

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.11  E-value=6.1e-10  Score=106.67  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---h-hhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---Y-SKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~-a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      =+++|++++|.|||||||||| ++++++...+..|.++++++.....   .   + .+.+++.+++..+++..++.+.+.
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  109 (233)
T PRK11629         31 SIGEGEMMAIVGSSGSGKSTL-LHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA  109 (233)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence            478999999999999999999 9999999999999999998754321   1   1 245788787765555445544332


Q ss_pred             H---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          212 I---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       212 ~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                      .               +.++++     .+-++....-. ..++++  |++|+...++++                    .
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  181 (233)
T PRK11629        110 MPLLIGKKKPAEINSRALEMLA-----AVGLEHRANHR-PSELSG--GERQRVAIARALVNNPRLVLADEPTGNLDARNA  181 (233)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHH-----HcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            2               111111     12222222111 134444  777777777765                    2


Q ss_pred             HHHHH-HHHHHHhcCCEEEEEeccccccc
Q 013567          257 QALRK-MSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       257 ~~l~~-L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +.+.. |..+.++.+.|||+++|..+.+.
T Consensus       182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~  210 (233)
T PRK11629        182 DSIFQLLGELNRLQGTAFLVVTHDLQLAK  210 (233)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            23333 33333446899999999987543

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.11  E-value=9.1e-10  Score=100.75  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=84.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH-------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM-------  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee-------  208 (440)
                      =+++|++++|.||||+||||| ++++.+...+..|.++++++.....   .+.+.+++.+++..++.. ++.+       
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~lLS~G~  101 (173)
T cd03246          24 SIEPGESLAIIGPSGSGKSTL-ARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENILSGGQ  101 (173)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHCcCHHH
Confidence            467999999999999999999 9999999999999999988754321   244567787777655542 4432       


Q ss_pred             --HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          209 --ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       209 --~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                        -+.+++.++  .+++++++|....-....             ..+.+.+.+   ..+ ++.+.|||+++|..+.+
T Consensus       102 ~qrv~la~al~--~~p~~lllDEPt~~LD~~-------------~~~~l~~~l---~~~-~~~~~tii~~sh~~~~~  159 (173)
T cd03246         102 RQRLGLARALY--GNPRILVLDEPNSHLDVE-------------GERALNQAI---AAL-KAAGATRIVIAHRPETL  159 (173)
T ss_pred             HHHHHHHHHHh--cCCCEEEEECCccccCHH-------------HHHHHHHHH---HHH-HhCCCEEEEEeCCHHHH
Confidence              233444443  368899999887665311             011223333   333 34589999999987644

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.10  E-value=4.6e-10  Score=109.46  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=82.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH-------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE-------  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~-------  211 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.+++++...  ..+.+.+++.+++..++...++.+.+.       
T Consensus        34 ~i~~Ge~~~I~G~NGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~  110 (257)
T PRK11247         34 HIPAGQFVAVVGRSGCGKSTL-LRLLAGLETPSAGELLAGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW  110 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccchH
Confidence            478999999999999999999 9999999998889888876432  123345666666554444334433322       


Q ss_pred             --HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHh
Q 013567          212 --IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASK  268 (440)
Q Consensus       212 --~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~  268 (440)
                        .+..++...+     ++....-. ...+++  |++|+...++++                     ..+...|..+.++
T Consensus       111 ~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--Gqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  182 (257)
T PRK11247        111 RDAALQALAAVG-----LADRANEW-PAALSG--GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ  182 (257)
T ss_pred             HHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence              1112222111     11111111 133443  666666666665                     2233344444556


Q ss_pred             cCCEEEEEecccccccc
Q 013567          269 AGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       269 ~~~tVI~inhl~~~ig~  285 (440)
                      .+.|||+++|..+.+..
T Consensus       183 ~~~tviivsHd~~~~~~  199 (257)
T PRK11247        183 HGFTVLLVTHDVSEAVA  199 (257)
T ss_pred             cCCEEEEEeCCHHHHHH
Confidence            78999999999875543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.10  E-value=3.4e-10  Score=108.86  Aligned_cols=140  Identities=20%  Similarity=0.290  Sum_probs=85.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-----hhhhhhcccccceeecCCCCHHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQPDNGEMALEI-  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~~~~~ee~l~~-  212 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.+++++......     .+.+.+++.+++..+....++.+.+.. 
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  101 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTL-LRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG  101 (240)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence            468999999999999999999 9999999999999999998754321     234557777766554444444333221 


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                                     +.++++     .+-++...... ...+++  |++++...++++                    ..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~  173 (240)
T PRK09493        102 PLRVRGASKEEAEKQARELLA-----KVGLAERAHHY-PSELSG--GQQQRVAIARALAVKPKLMLFDEPTSALDPELRH  173 (240)
T ss_pred             HHHhcCCCHHHHHHHHHHHHH-----HcCChHHHhcC-hhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence                           111111     11122211111 133333  666666666665                    23


Q ss_pred             HHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYY  287 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~  287 (440)
                      .+..+...+++.+.|||+++|..+.+...+
T Consensus       174 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~  203 (240)
T PRK09493        174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVA  203 (240)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence            333333333456899999999987654433

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.10  E-value=2.5e-10  Score=112.52  Aligned_cols=137  Identities=16%  Similarity=0.215  Sum_probs=86.6

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccccccee-ecCCCCHHHHHH--
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLI-VCQPDNGEMALE--  211 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~-i~~~~~~ee~l~--  211 (440)
                      =-|++|++++|.|+|||||||| ++++.++..+..|.++++++.....   .+.+.+|+.+++.. .+...++.+.+.  
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~  106 (279)
T PRK13650         28 FHVKQGEWLSIIGHNGSGKSTT-VRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG  106 (279)
T ss_pred             EEEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence            3578999999999999999999 9999999999999999998764321   24556788777642 222233333222  


Q ss_pred             -------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567          212 -------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ  257 (440)
Q Consensus       212 -------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~  257 (440)
                                   .+.++++     .+-++......+ .++++  |++|+...++++                     ..
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~LSg--Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~  178 (279)
T PRK13650        107 LENKGIPHEEMKERVNEALE-----LVGMQDFKEREP-ARLSG--GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE  178 (279)
T ss_pred             HHhCCCCHHHHHHHHHHHHH-----HCCCHhHhhCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence                         1122222     111222222221 34443  677777777765                     23


Q ss_pred             HHHHHHHHHHhcCCEEEEEecccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ++..|..+.++.|.|||+++|..+.+
T Consensus       179 l~~~l~~l~~~~g~tilivtH~~~~~  204 (279)
T PRK13650        179 LIKTIKGIRDDYQMTVISITHDLDEV  204 (279)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            44445555555699999999998755

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.10  E-value=3.3e-10  Score=107.76  Aligned_cols=143  Identities=19%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC------hhhhhhhcccccce--eecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD------PSYSKALGVDVENL--IVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~------~~~a~~lGv~~~~l--~i~~~~~~ee~l  210 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++....      ..+.+.+++.+++.  .+....++.+.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl  105 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTL-ARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI  105 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence            578999999999999999999 999999999999999998875432      12345677777665  233334444433


Q ss_pred             HHHHHHH---------hc---CCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          211 EIADRMC---------RS---GAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       211 ~~i~~l~---------~~---~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                      .......         ..   .-...+-++ ...... ...+++  |++|+...+|++                     .
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  182 (228)
T cd03257         106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHELSG--GQRQRVAIARALALNPKLLIADEPTSALDVSVQA  182 (228)
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhcCH--HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence            2110000         00   000111111 111111 133443  777777777776                     2


Q ss_pred             HHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      .+...|..+.++.+.|||+++|..+.+..
T Consensus       183 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~  211 (228)
T cd03257         183 QILDLLKKLQEELGLTLLFITHDLGVVAK  211 (228)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            23334444445558999999999875543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.09  E-value=1.1e-09  Score=99.51  Aligned_cols=120  Identities=18%  Similarity=0.290  Sum_probs=80.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHH--HHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGE--MALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~e--e~l~~  212 (440)
                      -+++|+++.|.|+||+||||| ++++.+...+..|.++++++.....    .+.+.+++.++       .+.-  +.+..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~l   93 (163)
T cd03216          22 SVRRGEVHALLGENGAGKSTL-MKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEI   93 (163)
T ss_pred             EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHH
Confidence            478999999999999999999 9999999999999999988654321    12334554433       3332  33445


Q ss_pred             HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          213 ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      ++.++.  +++++++|....-...             ...+.+.+.++.   + ++.+.|||+++|..+.+..
T Consensus        94 aral~~--~p~illlDEP~~~LD~-------------~~~~~l~~~l~~---~-~~~~~tiii~sh~~~~~~~  147 (163)
T cd03216          94 ARALAR--NARLLILDEPTAALTP-------------AEVERLFKVIRR---L-RAQGVAVIFISHRLDEVFE  147 (163)
T ss_pred             HHHHhc--CCCEEEEECCCcCCCH-------------HHHHHHHHHHHH---H-HHCCCEEEEEeCCHHHHHH
Confidence            555543  6899999987765531             111223333333   3 3458999999999875543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.09  E-value=3.4e-10  Score=106.62  Aligned_cols=137  Identities=19%  Similarity=0.231  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhccccccee-ecCCCCHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLI-VCQPDNGEMALEI--  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~-i~~~~~~ee~l~~--  212 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.++++++....   ..+.+.+++.+++.. .....++.+.+..  
T Consensus        23 ~i~~G~~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~  101 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTL-LRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL  101 (211)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHH
Confidence            477999999999999999999 999999999999999998865332   124456777776542 1222343332221  


Q ss_pred             -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HH
Q 013567          213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QA  258 (440)
Q Consensus       213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~  258 (440)
                                   +.+++..     +-++....-. ...+++  |++|+...+|++                    . .+
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~  173 (211)
T cd03225         102 ENLGLPEEEIEERVEEALEL-----VGLEGLRDRS-PFTLSG--GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL  173 (211)
T ss_pred             HHcCCCHHHHHHHHHHHHHH-----cCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence                         1112111     1122211111 134444  677777777766                    2 23


Q ss_pred             HHHHHHHHHhcCCEEEEEecccccccc
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      +..|..+.+ .++|||+++|..+.+..
T Consensus       174 ~~~l~~~~~-~~~tvi~~sH~~~~~~~  199 (211)
T cd03225         174 LELLKKLKA-EGKTIIIVTHDLDLLLE  199 (211)
T ss_pred             HHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence            333444443 48999999999775543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=6e-10  Score=107.21  Aligned_cols=138  Identities=14%  Similarity=0.209  Sum_probs=84.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h-hhhhhcccccceeecCCCCHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S-YSKALGVDVENLIVCQPDNGEMALEI--  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~-~a~~lGv~~~~l~i~~~~~~ee~l~~--  212 (440)
                      =+++|++++|.||||+||||| ++++++...+..|.++++++.....   . ..+.+++.+++..++...++.+.+..  
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  103 (241)
T PRK10895         25 TVNSGEIVGLLGPNGAGKTTT-FYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVL  103 (241)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence            467999999999999999999 9999999999999999988754321   1 23457777766554444344332221  


Q ss_pred             --------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567          213 --------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA  258 (440)
Q Consensus       213 --------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~  258 (440)
                                    +..++..     +-++...... ..++++  |++++...++++                    ...
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (241)
T PRK10895        104 QIRDDLSAEQREDRANELMEE-----FHIEHLRDSM-GQSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPISVID  175 (241)
T ss_pred             hcccccCHHHHHHHHHHHHHH-----cCCHHHhhcc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence                          1111111     1111111111 133443  666666666665                    233


Q ss_pred             HHHHHHHHHhcCCEEEEEecccccccc
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      +.++...+++.+.|||+++|..+.+..
T Consensus       176 l~~~l~~~~~~g~tiii~sH~~~~~~~  202 (241)
T PRK10895        176 IKRIIEHLRDSGLGVLITDHNVRETLA  202 (241)
T ss_pred             HHHHHHHHHhcCCEEEEEEcCHHHHHH
Confidence            344444445568999999998765543

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.09  E-value=8.4e-11  Score=113.24  Aligned_cols=155  Identities=16%  Similarity=0.228  Sum_probs=105.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      .+|.-.+++|+|++||||||| +++++++.+++.|.+-++++--.+.       ...+++|+.+++-.+++..++...+.
T Consensus        20 ~~p~~GvTAlFG~SGsGKTsl-in~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~   98 (352)
T COG4148          20 TLPARGITALFGPSGSGKTSL-INMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLR   98 (352)
T ss_pred             cCCCCceEEEecCCCCChhhH-HHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchh
Confidence            344446999999999999999 9999999999998887776643333       35788999998776665554433222


Q ss_pred             HHHHHHh----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567          212 IADRMCR----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA  266 (440)
Q Consensus       212 ~i~~l~~----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la  266 (440)
                      .-.....    ..-++++-|..+..-+| ..++|  |++|+..+.|++                     .+++--|.++.
T Consensus        99 YG~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSG--GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~  175 (352)
T COG4148          99 YGMWKSMRAQFDQLVALLGIEHLLDRYP-GTLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR  175 (352)
T ss_pred             hhhcccchHhHHHHHHHhCcHHHHhhCC-CccCc--chhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence            1110000    00133555666666665 56666  778888887776                     56788888899


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccc
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGI  297 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~  297 (440)
                      ++.+++|+.++|..+++..+.+.......|+
T Consensus       176 ~e~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk  206 (352)
T COG4148         176 DEINIPILYVSHSLDEVLRLADRVVVLENGK  206 (352)
T ss_pred             HhcCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence            9999999999999887654433333333333

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.09  E-value=6.2e-10  Score=109.14  Aligned_cols=138  Identities=19%  Similarity=0.229  Sum_probs=87.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h----hhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S----YSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~----~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.++++++.....   .    +.+.+++.+++..++...++.+.+.
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  124 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTL-LRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA  124 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHH
Confidence            367999999999999999999 9999999999999999988754321   1    1245787777665554445544433


Q ss_pred             HH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          212 IA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       212 ~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                      ..               ..+++     .+-++......+ .++++  |++|+...++++                    .
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~LS~--Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~  196 (269)
T cd03294         125 FGLEVQGVPRAEREERAAEALE-----LVGLEGWEHKYP-DELSG--GMQQRVGLARALAVDPDILLMDEAFSALDPLIR  196 (269)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHH-----HcCCHhHhhCCc-ccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            21               11111     111222111111 34443  777777777776                    2


Q ss_pred             -HHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          257 -QALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       257 -~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                       .+...|..+.++.+.|||+++|..+.+..
T Consensus       197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~  226 (269)
T cd03294         197 REMQDELLRLQAELQKTIVFITHDLDEALR  226 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence             23333444445568999999999875543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.08  E-value=6.4e-10  Score=102.63  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccce---eecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENL---IVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l---~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.++++++.....    .+.+.+++.+++.   .+....++.+.+.
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~  100 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTEL-AEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA  100 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence            578999999999999999999 9999999999999999998654321    2345677777653   2333344444332


Q ss_pred             --------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013567          212 --------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLN  277 (440)
Q Consensus       212 --------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~in  277 (440)
                                    +++.++  .+++++++|....-....             ..+.+.+.++.   + ++.+.|+|+++
T Consensus       101 ~~~~LS~G~~qrl~la~al~--~~p~llllDEP~~~LD~~-------------~~~~l~~~l~~---~-~~~~~tiii~s  161 (182)
T cd03215         101 LSSLLSGGNQQKVVLARWLA--RDPRVLILDEPTRGVDVG-------------AKAEIYRLIRE---L-ADAGKAVLLIS  161 (182)
T ss_pred             HHhhcCHHHHHHHHHHHHHc--cCCCEEEECCCCcCCCHH-------------HHHHHHHHHHH---H-HHCCCEEEEEe
Confidence                          222232  468899999877665311             11123333332   3 33489999999


Q ss_pred             cccccccc
Q 013567          278 QIRYKIGV  285 (440)
Q Consensus       278 hl~~~ig~  285 (440)
                      |..+.+..
T Consensus       162 h~~~~~~~  169 (182)
T cd03215         162 SELDELLG  169 (182)
T ss_pred             CCHHHHHH
Confidence            99765543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.08  E-value=6.6e-10  Score=107.68  Aligned_cols=138  Identities=17%  Similarity=0.260  Sum_probs=84.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----------------hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----------------PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----------------~~~a~~lGv~~~~l~i~~  202 (440)
                      -|++|++++|.||||+||||| ++++++...+..|.++++++....                ..+.+.+++.+++..++.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~  100 (252)
T TIGR03005        22 SVAAGEKVALIGPSGSGKSTI-LRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP  100 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCC
Confidence            478999999999999999999 999999999999999998865421                123455777776655544


Q ss_pred             CCCHHHHHHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567          203 PDNGEMALEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------  255 (440)
Q Consensus       203 ~~~~ee~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------  255 (440)
                      ..++.+.+..                +.++++     .+-++....-. ..++++  |++++...++++           
T Consensus       101 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDE  172 (252)
T TIGR03005       101 HKTVLDNVTEAPVLVLGMARAEAEKRAMELLD-----MVGLADKADHM-PAQLSG--GQQQRVAIARALAMRPKVMLFDE  172 (252)
T ss_pred             CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCChhHhhcC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeC
Confidence            4444333221                111111     11122211111 133333  666666666665           


Q ss_pred             ----------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                                ..++..|..+.++.+.|||+++|..+.+..
T Consensus       173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~  212 (252)
T TIGR03005       173 VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE  212 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence                      123333444445568999999999876543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.08  E-value=7e-10  Score=106.22  Aligned_cols=134  Identities=14%  Similarity=0.211  Sum_probs=79.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHH-------
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEI-------  212 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~-------  212 (440)
                      +++|++++|.|+||+||||| ++++.+...+..|.++++++.......  ..++.+++..++...++.+.+..       
T Consensus         8 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~   84 (230)
T TIGR01184         8 IQQGEFISLIGHSGCGKSTL-LNLISGLAQPTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLP   84 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence            57999999999999999999 999999999999999998764322111  12444444433333344333221       


Q ss_pred             ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                +..++.     .+-++...... ..++++  |++|+...++++                     ..+...
T Consensus        85 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  156 (230)
T TIGR01184        85 DLSKSERRAIVEEHIA-----LVGLTEAADKR-PGQLSG--GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE  156 (230)
T ss_pred             CCCHHHHHHHHHHHHH-----HcCCHHHHcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence                      111111     11122111111 133443  666666666665                     233344


Q ss_pred             HHHHHHhcCCEEEEEeccccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      |..++++.+.|||+++|..+.+.
T Consensus       157 l~~~~~~~~~tii~~sH~~~~~~  179 (230)
T TIGR01184       157 LMQIWEEHRVTVLMVTHDVDEAL  179 (230)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHH
Confidence            44555556899999999987554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.08  E-value=6.9e-10  Score=109.90  Aligned_cols=137  Identities=18%  Similarity=0.260  Sum_probs=87.8

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccce--eecCCCCHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENL--IVCQPDNGEMAL  210 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l--~i~~~~~~ee~l  210 (440)
                      --|++|++++|.|+||+||||| ++++.++..+..|.++++++....     ..+.+.+|+.+++.  .++ +.++.+.+
T Consensus        28 ~~i~~Ge~~~i~G~nGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l  105 (287)
T PRK13637         28 IEIEDGEFVGLIGHTGSGKSTL-IQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDI  105 (287)
T ss_pred             EEEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc-cccHHHHH
Confidence            3578999999999999999999 999999999999999999876432     13456788887764  222 22333322


Q ss_pred             H---------------HHHHHHhcCCcceEEEe--cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          211 E---------------IADRMCRSGAIDLICVD--SVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       211 ~---------------~i~~l~~~~~~~lvVID--sl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                      .               .+.+++..     +-++  .+..-. ...+++  |++|+...++++                  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~-----~gL~~~~~~~~~-~~~LSg--Gq~qrv~iAraL~~~P~llllDEPt~gLD~  177 (287)
T PRK13637        106 AFGPINLGLSEEEIENRVKRAMNI-----VGLDYEDYKDKS-PFELSG--GQKRRVAIAGVVAMEPKILILDEPTAGLDP  177 (287)
T ss_pred             HhHHHHCCCCHHHHHHHHHHHHHH-----cCCCchhhccCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence            1               12222222     1121  111111 244444  788888888877                  


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                         ...+..|..+.++.+.|||+++|..+.+.
T Consensus       178 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~  209 (287)
T PRK13637        178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVA  209 (287)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence               23333344444556999999999987553

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.08  E-value=8.7e-10  Score=106.22  Aligned_cols=138  Identities=21%  Similarity=0.312  Sum_probs=87.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEMALEIA--  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i--  213 (440)
                      -|++|++++|.||||+||||| ++++.+...+..|.++++++....  . .+.+.+++.+++..++...++.+.+...  
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  101 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTT-MKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK  101 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence            578999999999999999999 999999999999999998875432  1 2344577777766555444554433221  


Q ss_pred             -------------HHHHhcCCcceEEEec--ccccCCchhhcccchhhhHHHHHHHH--------------------H-H
Q 013567          214 -------------DRMCRSGAIDLICVDS--VSALTPRAEIEGEIGMQQIGLQARLM--------------------S-Q  257 (440)
Q Consensus       214 -------------~~l~~~~~~~lvVIDs--l~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~  257 (440)
                                   .+++.     .+-++.  +..-. ..++++  |++|+...++++                    . .
T Consensus       102 ~~~~~~~~~~~~~~~~l~-----~l~l~~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  173 (242)
T cd03295         102 LLKWPKEKIRERADELLA-----LVGLDPAEFADRY-PHELSG--GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ  173 (242)
T ss_pred             HcCCCHHHHHHHHHHHHH-----HcCCCcHHHHhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence                         11111     111211  11111 133443  777777777776                    2 2


Q ss_pred             HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      ++..|..+.++.+.|||+++|..+.+..
T Consensus       174 l~~~L~~~~~~~g~tvii~sH~~~~~~~  201 (242)
T cd03295         174 LQEEFKRLQQELGKTIVFVTHDIDEAFR  201 (242)
T ss_pred             HHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence            3333444444458999999998765443

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.08  E-value=4.1e-10  Score=115.56  Aligned_cols=158  Identities=20%  Similarity=0.266  Sum_probs=101.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC----CC--Chh-----hhhhhcccccceeecCCCCHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH----AF--DPS-----YSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~----~~--~~~-----~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      +++|+++.|.|+|||||||| ++++.++..+..|.++++++.    ..  +..     +.+.+++.+++..+++..++.+
T Consensus        47 i~~Gei~~I~G~nGsGKSTL-lr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e  125 (382)
T TIGR03415        47 IEEGEICVLMGLSGSGKSSL-LRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE  125 (382)
T ss_pred             EcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence            67999999999999999999 999999999999999999852    11  111     1246888888877766556554


Q ss_pred             HHHHHHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567          209 ALEIADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ  257 (440)
Q Consensus       209 ~l~~i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~  257 (440)
                      .+.......       .   ..-.+.+-++......+ .++++  |++|+...+|++                     ..
T Consensus       126 Ni~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-~~LSg--Gq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~  202 (382)
T TIGR03415       126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-GELSG--GMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ  202 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence            443211000       0   00112222333222332 45555  788888888877                     23


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      +...|..+.++.+.|||+++|..+.+...++.......|+....
T Consensus       203 l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~  246 (382)
T TIGR03415       203 LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH  246 (382)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            44455555566799999999998765444444445555655443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.08  E-value=3.4e-10  Score=107.32  Aligned_cols=69  Identities=25%  Similarity=0.339  Sum_probs=52.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h-hhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S-YSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~-~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|||||||||| ++++.+...+..|.+++++.....  . . ..+.+++.+++..++...++.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTL-LKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE   94 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence            578999999999999999999 999999999999999998864322  1 1 2345777777655554444443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.08  E-value=7.4e-10  Score=105.02  Aligned_cols=136  Identities=19%  Similarity=0.209  Sum_probs=85.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h---h-hhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S---Y-SKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~---~-a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++....  . .   + .+.+++.+++..+....++.+.+.
T Consensus        27 ~i~~G~~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~  105 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTL-LHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA  105 (221)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence            578999999999999999999 999999999999999998865322  1 1   1 245788777765554445444332


Q ss_pred             H---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          212 I---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       212 ~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                      .               +.+++.     .+-++...... ...+++  |++|+...++++                     
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~  177 (221)
T TIGR02211       106 MPLLIGKKSVKEAKERAYEMLE-----KVGLEHRINHR-PSELSG--GERQRVAIARALVNQPSLVLADEPTGNLDNNNA  177 (221)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence            1               111111     11222221121 134444  777777777766                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ..+...|..+.++.+.|||+++|..+.+
T Consensus       178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~  205 (221)
T TIGR02211       178 KIIFDLMLELNRELNTSFLVVTHDLELA  205 (221)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            2233334444445689999999997654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.07  E-value=7e-10  Score=107.99  Aligned_cols=66  Identities=26%  Similarity=0.302  Sum_probs=48.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -|++|++++|.||||+||||| ++++.+..++..|.+++++.....  ....+|+.+++..++...++.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~   88 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTL-LNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ   88 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence            478999999999999999999 999999999999999998765322  122356555554444333443

>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]

Probab=99.07  E-value=3.2e-11  Score=120.00  Aligned_cols=312  Identities=20%  Similarity=0.169  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCee-eccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVT-RLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .++..+++.++++++-.+. ...+ ..+-.....+..+++|.-..+..++ +|.+.+..+..+++.-+||++.+++.+..
T Consensus         4 ~~~~~~~~~al~~~~~~~~-~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~   82 (326)
T KOG1433|consen    4 SQKRLALQKALEEIGLSPA-PVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVP   82 (326)
T ss_pred             hHHHHHhhHHHHhcccCcc-chhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhH
Confidence            4566677888888876544 2221 1122234456788888888888887 89999999999999999999999999987


Q ss_pred             H-hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHH-HhcCCcceEEEeccccc--CCchhhccc
Q 013567          167 V-QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRM-CRSGAIDLICVDSVSAL--TPRAEIEGE  242 (440)
Q Consensus       167 ~-~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l-~~~~~~~lvVIDsl~~l--~~~~el~~~  242 (440)
                      + ++....+.+.+++...|+.+...++.......+.+|.+.+..+-..... +..+..++++||+.+.+  .+..++.++
T Consensus        83 ~~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~  162 (326)
T KOG1433|consen   83 MLQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGR  162 (326)
T ss_pred             HHHhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhh
Confidence            4 6677888999999999998888888888888899998887666544333 25667899999999953  334455566


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc---ccccCCceeecccceeeeeceEEEEEeecccccccC
Q 013567          243 IGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI---GVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVK  319 (440)
Q Consensus       243 ~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i---g~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~  319 (440)
                      .+...+..+.+.+....+.+...+.......++++|.+...   +++.....+..+| ...+.+..++..+....++  .
T Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l~--~  239 (326)
T KOG1433|consen  163 SGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSLK--K  239 (326)
T ss_pred             hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccccccccc-ccchHHHHHHHHHHHHHHH--H
Confidence            66665555556665555555554444444456677765422   2333333444555 6666666655555555555  3


Q ss_pred             CCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCc
Q 013567          320 GDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNP  399 (440)
Q Consensus       320 g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~  399 (440)
                      ..+.+|..+   |++|++.++++.+   ++|+.  +....+.+....+.++.+.|.|| ++++.. ++++....+|.+++
T Consensus       240 la~~~g~~v---vitn~v~~~~d~~---~~f~~--~~~~~~~~~~~~H~~~tr~~~~~-~~g~~~-~~k~~~s~~l~e~~  309 (326)
T KOG1433|consen  240 LADEFGVAV---VITNQVTAQVDGA---IMFGS--DPKKPIGGNIWAHAVTTRLGLRK-GKGERR-ICKIADSPCLPEAE  309 (326)
T ss_pred             HHHhcCceE---EEecccccccccc---cccCc--ccccccccchHHHHHHHHHHHHh-ccccch-hhhhhcCCCCCcch
Confidence            344455544   9999999999888   77776  66667777777778888889999 777776 78889999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 013567          400 LLQEEIEKVVRSMMS  414 (440)
Q Consensus       400 ~~~~ei~~~~~~~~~  414 (440)
                      ..++.++..+..+..
T Consensus       310 ~~~~i~~~g~~~~~~  324 (326)
T KOG1433|consen  310 AVFAITEDGISDQRE  324 (326)
T ss_pred             hHHHHHhhhhhhhhh
Confidence            999999988876543

>PRK10908 cell division protein FtsE; Provisional

Probab=99.07  E-value=7.8e-10  Score=105.10  Aligned_cols=137  Identities=15%  Similarity=0.169  Sum_probs=82.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++....  .    .+.+.+++.+++..+....++.+.+..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  102 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTL-LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI  102 (222)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHh
Confidence            468999999999999999999 999999999999999998864322  1    134567777766544333343332221


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                                     +..++..     +-++....-. ..++++  |++|+...++++                    .+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  174 (222)
T PRK10908        103 PLIIAGASGDDIRRRVSAALDK-----VGLLDKAKNF-PIQLSG--GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE  174 (222)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHH-----cCChhhhhCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence                           1111111     1111111111 133443  666766666665                    22


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      .+..+....++.+.|||+++|..+.+.
T Consensus       175 ~l~~~l~~~~~~~~tiii~sH~~~~~~  201 (222)
T PRK10908        175 GILRLFEEFNRVGVTVLMATHDIGLIS  201 (222)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            333333333445899999999977554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.07  E-value=8e-10  Score=105.80  Aligned_cols=62  Identities=19%  Similarity=0.341  Sum_probs=47.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~  201 (440)
                      -|.+|++++|.||||+||||| ++++++...+..|.++++++..... ...+.+++.+++..++
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~   83 (232)
T PRK10771         21 TVERGERVAILGPSGAGKSTL-LNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLF   83 (232)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccc
Confidence            478999999999999999999 9999999999999999998754321 1234466666554333

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.07  E-value=9.6e-10  Score=99.87  Aligned_cols=131  Identities=23%  Similarity=0.324  Sum_probs=95.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC------------Chh----hhhhhcccccceeecCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF------------DPS----YSKALGVDVENLIVCQPD  204 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~------------~~~----~a~~lGv~~~~l~i~~~~  204 (440)
                      ..|+++.|.|.+||||||| |++++-+.+|..|.+.+++|+..            +..    +..++|+.++++.++...
T Consensus        30 ~~GdVisIIGsSGSGKSTf-LRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm  108 (256)
T COG4598          30 NAGDVISIIGSSGSGKSTF-LRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM  108 (256)
T ss_pred             CCCCEEEEecCCCCchhHH-HHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence            5799999999999999999 99999999999999999998631            111    345689999888765543


Q ss_pred             CH----------------HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------
Q 013567          205 NG----------------EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------  255 (440)
Q Consensus       205 ~~----------------ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------  255 (440)
                      ++                .+..+.++.++.     -|-|+.-...+| ..++|  |++|+..++|++             
T Consensus       109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~-----kVGi~ek~~~YP-~~LSG--GQQQR~aIARaLameP~vmLFDEPT  180 (256)
T COG4598         109 TVLENVIEAPVHVLGVSKAEAIERAEKYLA-----KVGIAEKADAYP-AHLSG--GQQQRVAIARALAMEPEVMLFDEPT  180 (256)
T ss_pred             HHHHHHHhcchHhhcCCHHHHHHHHHHHHH-----HhCchhhhhcCc-cccCc--hHHHHHHHHHHHhcCCceEeecCCc
Confidence            32                344555555543     344555555564 67776  888999999887             


Q ss_pred             --------HHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          256 --------SQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       256 --------~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                              .+.++-+..+ .+.|.|+++++|.+.
T Consensus       181 SALDPElVgEVLkv~~~L-AeEgrTMv~VTHEM~  213 (256)
T COG4598         181 SALDPELVGEVLKVMQDL-AEEGRTMVVVTHEMG  213 (256)
T ss_pred             ccCCHHHHHHHHHHHHHH-HHhCCeEEEEeeehh
Confidence                    3445444444 456899999999875

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.07  E-value=1.1e-09  Score=105.76  Aligned_cols=138  Identities=17%  Similarity=0.168  Sum_probs=84.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----------hhhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----------PSYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----------~~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -+++|++++|.|+||+||||| ++++++...+..|.+++++.....           ..+.+.+++.+++..+....++.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  103 (250)
T PRK11264         25 EVKPGEVVAIIGPSGSGKTTL-LRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVL  103 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHH
Confidence            478999999999999999999 999999998889999998764321           12344677777766555444544


Q ss_pred             HHHHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH----------------
Q 013567          208 MALEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------------  255 (440)
Q Consensus       208 e~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------------  255 (440)
                      +.+..                +..++.     .+-++....-. ..++++  |++|+...++++                
T Consensus       104 e~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--Gq~qrv~la~al~~~p~lllLDEPt~~L  175 (250)
T PRK11264        104 ENIIEGPVIVKGEPKEEATARARELLA-----KVGLAGKETSY-PRRLSG--GQQQRVAIARALAMRPEVILFDEPTSAL  175 (250)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCCcchhhCC-hhhCCh--HHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            43321                111111     11111111111 133443  677777777766                


Q ss_pred             ----HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                          ...+..+...+.+.+.|||+++|..+.+..
T Consensus       176 D~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~  209 (250)
T PRK11264        176 DPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARD  209 (250)
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence                233333333334458999999999775543

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.07  E-value=5.9e-10  Score=105.64  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =+++|++++|.|||||||||| ++++.++..+..|.++++++....  ..+.+.+++.+++..+....++.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   94 (220)
T cd03263          24 NVYKGEIFGLLGHNGAGKTTT-LKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE   94 (220)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence            478999999999999999999 999999999999999998875432  124455777776655444444433

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.07  E-value=8.1e-10  Score=108.03  Aligned_cols=63  Identities=24%  Similarity=0.459  Sum_probs=48.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~  202 (440)
                      -+++|++++|+||||+||||| ++++++...+..|.++++++....   ..+.+.+++.+++..+..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~   94 (265)
T PRK10253         29 EIPDGHFTAIIGPNGCGKSTL-LRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG   94 (265)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCC
Confidence            467999999999999999999 999999998889999998864321   123445677666544433

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.07  E-value=9.3e-10  Score=104.92  Aligned_cols=136  Identities=18%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h-----hhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S-----YSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~-----~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.||||+||||| +++++++..+..|.++++++.....  .     +.+.+++.+++..+....++.+.+.
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~  110 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTL-LAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE  110 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence            367999999999999999999 9999999999999999988653221  1     1245777776655544434433222


Q ss_pred             H---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          212 I---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       212 ~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                      .               +.+++..     +-++...... ..++++  |++|+...++++                    .
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~  182 (228)
T PRK10584        111 LPALLRGESSRQSRNGAKALLEQ-----LGLGKRLDHL-PAQLSG--GEQQRVALARAFNGRPDVLFADEPTGNLDRQTG  182 (228)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHH-----cCCHhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            1               1111111     1111111111 133333  666666666665                    2


Q ss_pred             HHH-HHHHHHHHhcCCEEEEEecccccc
Q 013567          257 QAL-RKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       257 ~~l-~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      +.+ ..|..++++.+.|||+++|..+.+
T Consensus       183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~  210 (228)
T PRK10584        183 DKIADLLFSLNREHGTTLILVTHDLQLA  210 (228)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            233 334444455689999999997644

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.07  E-value=8.5e-10  Score=105.17  Aligned_cols=73  Identities=22%  Similarity=0.269  Sum_probs=55.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -=+++|++++|+||||+||||| ++++.+...   +..|.++++++......+.+.+++.+++..++...++.+.+.
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTL-lk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~  103 (226)
T cd03234          28 LHVESGQVMAILGSSGSGKTTL-LDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLT  103 (226)
T ss_pred             EEEcCCeEEEEECCCCCCHHHH-HHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHH
Confidence            3578999999999999999999 999999988   788999998875433234556777777665555445544443

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.06  E-value=6.3e-10  Score=116.26  Aligned_cols=166  Identities=17%  Similarity=0.232  Sum_probs=102.1

Q ss_pred             CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chhhhhhhccc--ccceeecCC
Q 013567          128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPSYSKALGVD--VENLIVCQP  203 (440)
Q Consensus       128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~~a~~lGv~--~~~l~i~~~  203 (440)
                      |+..||.+- =-+.+|+++.+.|.||+||||| ++++.+...++.|.++++++...  ++.-++..|+.  .|++.+++.
T Consensus        20 gV~AL~~v~-l~v~~GEV~aL~GeNGAGKSTL-mKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~   97 (500)
T COG1129          20 GVKALDGVS-LTVRPGEVHALLGENGAGKSTL-MKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN   97 (500)
T ss_pred             Cceeeccce-eEEeCceEEEEecCCCCCHHHH-HHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC
Confidence            445555542 3578999999999999999999 99999999999999999988643  33345555542  333322222


Q ss_pred             CCH-------------------HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------
Q 013567          204 DNG-------------------EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------  255 (440)
Q Consensus       204 ~~~-------------------ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------  255 (440)
                      .++                   ..+...+.+++...+..   +| +....  .+++  .+++|+...+|++         
T Consensus        98 LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~---~~-~~~~v--~~Ls--iaqrQ~VeIArAl~~~arllIl  169 (500)
T COG1129          98 LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD---ID-PDTLV--GDLS--IAQRQMVEIARALSFDARVLIL  169 (500)
T ss_pred             ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC---CC-hhhhh--hhCC--HHHHHHHHHHHHHhcCCCEEEE
Confidence            222                   12222222332222221   11 11111  1111  2445555555544         


Q ss_pred             -----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          256 -----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       256 -----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                                 .+.+-.+.+.+++.|++||+|||-.+++-..++...+.-+|..+....
T Consensus       170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence                       345556667778899999999999888877777777777777655544

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.06  E-value=4.4e-10  Score=106.16  Aligned_cols=136  Identities=24%  Similarity=0.357  Sum_probs=83.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      +++ ++++|.||||+||||| ++++.+...+..|.++++++....       ..+.+.+++.+++..+....++.+.+..
T Consensus        21 i~~-e~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~   98 (214)
T cd03297          21 LNE-EVTGIFGASGAGKSTL-LRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAF   98 (214)
T ss_pred             Ecc-eeEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHH
Confidence            578 9999999999999999 999999999999999998865321       1134457777776555544454433221


Q ss_pred             -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHH
Q 013567          213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQA  258 (440)
Q Consensus       213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~  258 (440)
                                   +.+++.     .+-++...... ..++++  |++|+...++++                     ..+
T Consensus        99 ~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  170 (214)
T cd03297          99 GLKRKRNREDRISVDELLD-----LLGLDHLLNRY-PAQLSG--GEKQRVALARALAAQPELLLLDEPFSALDRALRLQL  170 (214)
T ss_pred             HHhhCCHHHHHHHHHHHHH-----HcCCHhHhhcC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence                         111111     11122211111 133443  666666666665                     223


Q ss_pred             HHHHHHHHHhcCCEEEEEecccccccc
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      ...|..++++.+.|||+++|..+.+..
T Consensus       171 ~~~l~~~~~~~~~tiii~sH~~~~~~~  197 (214)
T cd03297         171 LPELKQIKKNLNIPVIFVTHDLSEAEY  197 (214)
T ss_pred             HHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence            333444445568999999999876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.06  E-value=7.1e-10  Score=107.11  Aligned_cols=153  Identities=16%  Similarity=0.173  Sum_probs=104.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----------hhhhhhcccccceeecC-CCCH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----------SYSKALGVDVENLIVCQ-PDNG-  206 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----------~~a~~lGv~~~~l~i~~-~~~~-  206 (440)
                      -+.+|++++|+|++||||||+ -+++.++.++..|.++|++.+....          .+...+|...+.+.-++ ..++ 
T Consensus        35 ~i~~ge~~glVGESG~GKSTl-gr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG  113 (268)
T COG4608          35 SIKEGETLGLVGESGCGKSTL-GRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG  113 (268)
T ss_pred             EEcCCCEEEEEecCCCCHHHH-HHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence            578999999999999999999 7899999999999999998763221          02334453333222221 1222 


Q ss_pred             -HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          207 -EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       207 -ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                       .|-+.+++.+.  .+++++|.|........ .           .|    ++++.-|..+-++.|.+.+||+|+...+..
T Consensus       114 QrQRi~IARALa--l~P~liV~DEpvSaLDv-S-----------iq----aqIlnLL~dlq~~~~lt~lFIsHDL~vv~~  175 (268)
T COG4608         114 QRQRIGIARALA--LNPKLIVADEPVSALDV-S-----------VQ----AQILNLLKDLQEELGLTYLFISHDLSVVRY  175 (268)
T ss_pred             hhhhHHHHHHHh--hCCcEEEecCchhhcch-h-----------HH----HHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence             33445555553  36888888887766531 0           11    456777778888899999999999887776


Q ss_pred             ccCCceeecccceeeeeceEEEEEe
Q 013567          286 YYGNPEVTSGGIALKFFASVRLEIR  310 (440)
Q Consensus       286 ~~~~~~~~~gG~~l~~~a~~rl~l~  310 (440)
                      +++...++-.|+++.......++-.
T Consensus       176 isdri~VMy~G~iVE~g~~~~~~~~  200 (268)
T COG4608         176 ISDRIAVMYLGKIVEIGPTEEVFSN  200 (268)
T ss_pred             hcccEEEEecCceeEecCHHHHhhC
Confidence            6666666667777666655544443

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=8.9e-10  Score=106.18  Aligned_cols=137  Identities=16%  Similarity=0.222  Sum_probs=82.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALE----  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~----  211 (440)
                      =+++|++++|.|||||||||| ++++++...+..|.+++++.....   ..+.+.+++.+++..+++ .++.+.+.    
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~  102 (241)
T PRK14250         25 KFEGGAIYTIVGPSGAGKSTL-IKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPM  102 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchh
Confidence            367999999999999999999 999999999999999998865321   123445677666654443 23332221    


Q ss_pred             -------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------------HHHH-HHH
Q 013567          212 -------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL-RKM  262 (440)
Q Consensus       212 -------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l-~~L  262 (440)
                             .+..++..     +-++ .+.... ..++++  |++|+...++++                    .+.+ ..|
T Consensus       103 ~~~~~~~~~~~~l~~-----~~l~~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (241)
T PRK14250        103 LKGEKNVDVEYYLSI-----VGLNKEYATRD-VKNLSG--GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI  174 (241)
T ss_pred             hcCcHHHHHHHHHHH-----cCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence                   11111111     1111 111111 133443  677777777765                    2233 334


Q ss_pred             HHHHHhcCCEEEEEecccccccc
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      ..+.++.+.|||+++|..+.+..
T Consensus       175 ~~~~~~~g~tii~~sH~~~~~~~  197 (241)
T PRK14250        175 VKLKNKMNLTVIWITHNMEQAKR  197 (241)
T ss_pred             HHHHHhCCCEEEEEeccHHHHHH
Confidence            44444468999999999876543

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.06  E-value=4.5e-10  Score=107.05  Aligned_cols=137  Identities=18%  Similarity=0.278  Sum_probs=83.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ-----KLGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~-----~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+||+||||| ++++.+..     .+..|.++++++....     ..+.+.+++.+++..++ ..++.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e   99 (227)
T cd03260          22 DIPKGEITALIGPSGCGKSTL-LRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYD   99 (227)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHH
Confidence            477999999999999999999 99999999     8889999998875321     12345677777765544 445443


Q ss_pred             HHHH----------------HHHHHhcCCcceEEEecccccCC-chhhcccchhhhHHHHHHHH----------------
Q 013567          209 ALEI----------------ADRMCRSGAIDLICVDSVSALTP-RAEIEGEIGMQQIGLQARLM----------------  255 (440)
Q Consensus       209 ~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~-~~el~~~~g~~q~~~~ar~l----------------  255 (440)
                      .+..                +..+++     .+-++....-.+ ..++++  |++|+...++++                
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~L  172 (227)
T cd03260         100 NVAYGLRLHGIKLKEELDERVEEALR-----KAALWDEVKDRLHALGLSG--GQQQRLCLARALANEPEVLLLDEPTSAL  172 (227)
T ss_pred             HHHhHHHhcCCCcHHHHHHHHHHHHH-----HcCCChHHhccCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            3321                111111     111221111110 134444  778888778776                


Q ss_pred             ----HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                          ...+..+....++. .|||+++|..+.+..
T Consensus       173 D~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~  205 (227)
T cd03260         173 DPISTAKIEELIAELKKE-YTIVIVTHNMQQAAR  205 (227)
T ss_pred             CHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHH
Confidence                22333333333333 899999999875543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.06  E-value=9.5e-10  Score=106.65  Aligned_cols=69  Identities=17%  Similarity=0.270  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+.+|++++|.|+||+||||| ++++++...+..|.+++++......   .+ ...+++.+++..++...++.+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   99 (255)
T PRK11300         27 EVREQEIVSLIGPNGAGKTTV-FNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIE   99 (255)
T ss_pred             EEcCCeEEEEECCCCCCHHHH-HHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHH
Confidence            467999999999999999999 9999999999999999988753321   11 223555566554444444444

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.06  E-value=1.5e-09  Score=104.25  Aligned_cols=136  Identities=15%  Similarity=0.203  Sum_probs=82.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEI----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~----  212 (440)
                      -|.+|++++|.||||+||||| ++++.+...+..|.++++++....  ....+.+++.+++..+....++.+.+..    
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~  101 (236)
T TIGR03864        23 TVRPGEFVALLGPNGAGKSTL-FSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAAL  101 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHh
Confidence            477999999999999999999 999999999999999998864322  1223456776665444333343332221    


Q ss_pred             -----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567          213 -----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR  260 (440)
Q Consensus       213 -----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~  260 (440)
                                 +..+++.     +-++....-. ..++++  |++|+...++++                     ..+..
T Consensus       102 ~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~  173 (236)
T TIGR03864       102 HGLSRAEARERIAALLAR-----LGLAERADDK-VRELNG--GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA  173 (236)
T ss_pred             cCCCHHHHHHHHHHHHHH-----cCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence                       1111111     1111111111 133443  667776667665                     23334


Q ss_pred             HHHHHHHhcCCEEEEEecccccc
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      .|..++++.+.|||+++|..+.+
T Consensus       174 ~l~~~~~~~~~tiii~sH~~~~~  196 (236)
T TIGR03864       174 HVRALCRDQGLSVLWATHLVDEI  196 (236)
T ss_pred             HHHHHHHhCCCEEEEEecChhhH
Confidence            44444445689999999998755

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.05  E-value=1.2e-09  Score=106.16  Aligned_cols=137  Identities=16%  Similarity=0.169  Sum_probs=86.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----------------hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----------------PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----------------~~~a~~lGv~~~~l~i~~  202 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.++++++....                ..+.+.+++.+++..+..
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~  105 (257)
T PRK10619         27 QANAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  105 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence            578999999999999999999 999999999999999999875321                123456787777765555


Q ss_pred             CCCHHHHHHH----------------HHHHHhcCCcceEEEeccc-ccCCchhhcccchhhhHHHHHHHH----------
Q 013567          203 PDNGEMALEI----------------ADRMCRSGAIDLICVDSVS-ALTPRAEIEGEIGMQQIGLQARLM----------  255 (440)
Q Consensus       203 ~~~~ee~l~~----------------i~~l~~~~~~~lvVIDsl~-~l~~~~el~~~~g~~q~~~~ar~l----------  255 (440)
                      ..++.+.+..                +.++++.     +-++... .-. ..++++  |++++...+|++          
T Consensus       106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllD  177 (257)
T PRK10619        106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAK-----VGIDERAQGKY-PVHLSG--GQQQRVSIARALAMEPEVLLFD  177 (257)
T ss_pred             CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----cCCChhhhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEe
Confidence            4454443321                1111111     1121110 111 134443  777777777766          


Q ss_pred             ----------HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                                .+.+..+...+++.+.|||+++|..+.+.
T Consensus       178 EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~  216 (257)
T PRK10619        178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR  216 (257)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                      23333333334456999999999877554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.05  E-value=5.4e-10  Score=109.26  Aligned_cols=150  Identities=18%  Similarity=0.233  Sum_probs=86.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALE----  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~----  211 (440)
                      -|++|++++|.|+||+||||| ++++++...+..|.++++++....   ..+.+.+++.+++..+....++.+.+.    
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  111 (265)
T PRK10575         33 TFPAGKVTGLIGHNGSGKSTL-LKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRY  111 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcc
Confidence            467999999999999999999 999999998889999998864321   123445666665533333333332221    


Q ss_pred             ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                                     .+..++.     .+-++...... ...+++  |++++...++++                     
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~  183 (265)
T PRK10575        112 PWHGALGRFGAADREKVEEAIS-----LVGLKPLAHRL-VDSLSG--GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ  183 (265)
T ss_pred             cccccccCCCHHHHHHHHHHHH-----HcCCHHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence                           1111111     11112111111 133443  666666666665                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccc
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGI  297 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~  297 (440)
                      ..+...|..+.++.+.|||+++|..+.+...++.......|+
T Consensus       184 ~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~  225 (265)
T PRK10575        184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE  225 (265)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence            223333444445568999999999876644344333333343

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.05  E-value=5.7e-10  Score=106.11  Aligned_cols=67  Identities=19%  Similarity=0.349  Sum_probs=48.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -+.+|++++|.|+||+||||| ++++++...+..|.+++++....... .+.+++.+++..+....++.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~   88 (223)
T TIGR03740        22 TVPKNSVYGLLGPNGAGKSTL-LKMITGILRPTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR   88 (223)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence            367999999999999999999 99999999899999999876432111 23566655554444333443

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.05  E-value=1.3e-09  Score=101.45  Aligned_cols=122  Identities=14%  Similarity=0.168  Sum_probs=80.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEI----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~----  212 (440)
                      -+++|++++|.||||+||||| ++++.+..  .+..|.++++++... ..+.+.+++.+++..++...++.+.+..    
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (192)
T cd03232          29 YVKPGTLTALMGESGAGKTTL-LDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL  106 (192)
T ss_pred             EEeCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence            477999999999999999999 99999864  367888999887543 3334567777766554444455444332    


Q ss_pred             -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                                   ++.++  .+++++++|....-....             ..+.+.+.+   ..+ ++.+.|||+++|.
T Consensus       107 ~~LSgGe~qrv~la~al~--~~p~vlllDEP~~~LD~~-------------~~~~l~~~l---~~~-~~~~~tiiivtH~  167 (192)
T cd03232         107 RGLSVEQRKRLTIGVELA--AKPSILFLDEPTSGLDSQ-------------AAYNIVRFL---KKL-ADSGQAILCTIHQ  167 (192)
T ss_pred             hcCCHHHhHHHHHHHHHh--cCCcEEEEeCCCcCCCHH-------------HHHHHHHHH---HHH-HHcCCEEEEEEcC
Confidence                         22222  367899999877655310             011222333   333 3458999999999


Q ss_pred             cc
Q 013567          280 RY  281 (440)
Q Consensus       280 ~~  281 (440)
                      .+
T Consensus       168 ~~  169 (192)
T cd03232         168 PS  169 (192)
T ss_pred             Ch
Confidence            75

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.05  E-value=1.2e-09  Score=108.23  Aligned_cols=144  Identities=17%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eec
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVC  201 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~  201 (440)
                      .|+.+- --|++|++++|.|+|||||||| ++++.+...+..|.+++++.....       ..+.+.+|+.+++.  .++
T Consensus        22 ~l~~vs-l~i~~Ge~~~i~G~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   99 (286)
T PRK13646         22 AIHDVN-TEFEQGKYYAIVGQTGSGKSTL-IQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF   99 (286)
T ss_pred             ceeeeE-EEEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence            444432 4678999999999999999999 999999999999999999875432       12456788888763  222


Q ss_pred             CCCCHHHHHH---------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH----------
Q 013567          202 QPDNGEMALE---------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM----------  255 (440)
Q Consensus       202 ~~~~~ee~l~---------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l----------  255 (440)
                      . .++.+.+.               .+.+++.     .+-++ ....-. ...+++  |++|+...++++          
T Consensus       100 ~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--Gq~qrv~laraL~~~p~illlD  170 (286)
T PRK13646        100 E-DTVEREIIFGPKNFKMNLDEVKNYAHRLLM-----DLGFSRDVMSQS-PFQMSG--GQMRKIAIVSILAMNPDIIVLD  170 (286)
T ss_pred             h-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEE
Confidence            2 23332221               1222221     11121 111111 234444  777777777776          


Q ss_pred             ----------HHHH-HHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ----------SQAL-RKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ----------~~~l-~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                                ...+ ..|..+.++.++|||+++|..+.+..
T Consensus       171 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~  211 (286)
T PRK13646        171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR  211 (286)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence                      2233 33334444568999999999876543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.05  E-value=1.4e-09  Score=99.32  Aligned_cols=124  Identities=22%  Similarity=0.281  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHH------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMA------  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~------  209 (440)
                      =+++|+++.|.||||+||||| ++++++...+..|.++++++....   ..+.+.+++.+++..+++ .++.+.      
T Consensus        24 ~i~~G~~~~l~G~nGsGKstL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~  101 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTL-LKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQ  101 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHH
Confidence            478999999999999999999 999999999999999998875322   123455777776655543 344322      


Q ss_pred             ---HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          210 ---LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       210 ---l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                         +.+++.++  .+++++++|....-....            . .+.+.+.+   ..+ ++ +.|||+++|..+.+.
T Consensus       102 ~~rl~la~al~--~~p~llllDEP~~gLD~~------------~-~~~l~~~l---~~~-~~-~~tii~~sh~~~~~~  159 (171)
T cd03228         102 RQRIAIARALL--RDPPILILDEATSALDPE------------T-EALILEAL---RAL-AK-GKTVIVIAHRLSTIR  159 (171)
T ss_pred             HHHHHHHHHHh--cCCCEEEEECCCcCCCHH------------H-HHHHHHHH---HHh-cC-CCEEEEEecCHHHHH
Confidence               33344443  368999999877655311            0 11223333   233 23 689999999987553

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.05  E-value=4.9e-10  Score=107.67  Aligned_cols=56  Identities=25%  Similarity=0.437  Sum_probs=44.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDV  195 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~  195 (440)
                      =+++|++++|.|+||+||||| ++++++...+..|.++++++....  ..+.+.+++.+
T Consensus        43 ~i~~Ge~~~i~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~  100 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTT-LKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF  100 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEccccchhhcccEEEEc
Confidence            467999999999999999999 999999999999999998764322  12334566654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.04  E-value=1.1e-09  Score=107.75  Aligned_cols=59  Identities=19%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l  198 (440)
                      =|++|++++|.|+||+||||| ++++.+..++..|.+++++......   .+.+.+|+.+++.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   88 (274)
T PRK13647         27 SIPEGSKTALLGPNGAGKSTL-LLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDP   88 (274)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence            478999999999999999999 9999999999999999998754321   2345678777654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.04  E-value=9.7e-10  Score=109.00  Aligned_cols=138  Identities=17%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEM  208 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee  208 (440)
                      -=|++|++++|.|+||+||||| ++++.++..+..|.++++++....       ..+.+.+|+.+++.  .++. .++.+
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e  105 (290)
T PRK13634         28 VSIPSGSYVAIIGHTGSGKSTL-LQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEK  105 (290)
T ss_pred             EEEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHH
Confidence            4578999999999999999999 999999999999999999875421       12445688877764  2332 23333


Q ss_pred             HHH---------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          209 ALE---------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       209 ~l~---------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                      .+.               .+..+++     .+-++ .+.... ...+++  |++|+...++++                 
T Consensus       106 ni~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~P~llllDEPt~~LD  177 (290)
T PRK13634        106 DICFGPMNFGVSEEDAKQKAREMIE-----LVGLPEELLARS-PFELSG--GQMRRVAIAGVLAMEPEVLVLDEPTAGLD  177 (290)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH-----HCCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence            222               1122221     22221 111111 244444  777877777776                 


Q ss_pred             ----HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                          ..++..|..+.++.|.|||+++|..+.+..
T Consensus       178 ~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~  211 (290)
T PRK13634        178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR  211 (290)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence                234444555556679999999999876543

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.04  E-value=2.1e-09  Score=100.57  Aligned_cols=69  Identities=23%  Similarity=0.249  Sum_probs=51.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =+++|++++|.|+||+||||| ++++++...+..|.++++++.....  .+.+.+++.+++..+....++.+
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   93 (200)
T PRK13540         23 HLPAGGLLHLKGSNGAGKTTL-LKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE   93 (200)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHH
Confidence            367999999999999999999 9999999999999999998754321  23455676665544444444443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.04  E-value=4.7e-10  Score=104.47  Aligned_cols=165  Identities=17%  Similarity=0.238  Sum_probs=101.9

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCCh-----hhhhhhcccccceeecCCCCH-
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQPDNG-  206 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~~~~~-  206 (440)
                      -.||++++++|.||+||||||| |++++.+-..-     .|.+++++++..++     .+.+++|+.+++...++ .+. 
T Consensus        28 l~i~~~~VTAlIGPSGcGKST~-LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIy  105 (253)
T COG1117          28 LDIPKNKVTALIGPSGCGKSTL-LRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIY  105 (253)
T ss_pred             eeccCCceEEEECCCCcCHHHH-HHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHH
Confidence            6899999999999999999999 99999886532     37788999887765     26788999887544332 111 


Q ss_pred             --------------HHHHHHHHHHHhcCCcceEEEecccccCCc--hhhcccchhhhHHHHHHHH---------------
Q 013567          207 --------------EMALEIADRMCRSGAIDLICVDSVSALTPR--AEIEGEIGMQQIGLQARLM---------------  255 (440)
Q Consensus       207 --------------ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~--~el~~~~g~~q~~~~ar~l---------------  255 (440)
                                    .++.++++..++..    -.+|.+-.-...  ..++|  |++|+...||++               
T Consensus       106 dNVayG~r~~g~~~~~ldeiVe~sLk~A----aLWdEVKDrL~~sa~~LSG--GQQQRLcIARalAv~PeVlLmDEPtSA  179 (253)
T COG1117         106 DNVAYGLRLHGIKDKELDEIVESSLKKA----ALWDEVKDRLHKSALGLSG--GQQQRLCIARALAVKPEVLLMDEPTSA  179 (253)
T ss_pred             HHHHHhHHhhccchHHHHHHHHHHHHHh----HhHHHhHHHhhCCccCCCh--hHHHHHHHHHHHhcCCcEEEecCcccc
Confidence                          22223333322211    112222222111  22333  777777777776               


Q ss_pred             -----HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEee
Q 013567          256 -----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS  311 (440)
Q Consensus       256 -----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r  311 (440)
                           ...+..|..-++ .+.|||+++|.+.......+...+...|..+++..+..++..+
T Consensus       180 LDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P  239 (253)
T COG1117         180 LDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNP  239 (253)
T ss_pred             cCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCc
Confidence                 233444444444 5789999999986443222223344467777777766666554

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.03  E-value=1.6e-09  Score=105.31  Aligned_cols=60  Identities=18%  Similarity=0.321  Sum_probs=47.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhccccccee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLI  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~  199 (440)
                      -+++|++++|.|+||+||||| ++++++...+..|.++++++....   ..+.+.+++.+++..
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~   85 (256)
T TIGR03873        23 TAPPGSLTGLLGPNGSGKSTL-LRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD   85 (256)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc
Confidence            467999999999999999999 999999999999999998865322   123345676666543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.03  E-value=1.4e-09  Score=107.28  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=48.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l  198 (440)
                      -|.+|++++|.||||+||||| ++++.+..++..|.+++++......   .+.+.+|+.+++.
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTL-l~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~   90 (279)
T PRK13635         29 SVYEGEWVAIVGHNGSGKSTL-AKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP   90 (279)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence            578999999999999999999 9999999999999999998754321   2345677777654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.03  E-value=8.2e-10  Score=105.44  Aligned_cols=70  Identities=19%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -|++|++++|.|+|||||||| ++++++...+..|.++++++.....    ...+.+++.+++..++...++.+.
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   95 (230)
T TIGR03410        22 EVPKGEVTCVLGRNGVGKTTL-LKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEEN   95 (230)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHH
Confidence            478999999999999999999 9999999999999999988653321    123457777776555544454443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.03  E-value=1e-09  Score=105.04  Aligned_cols=141  Identities=20%  Similarity=0.332  Sum_probs=83.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHH--
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRM--  216 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l--  216 (440)
                      +.+|++++|.|+||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..++...++.+.+......  
T Consensus        23 i~~Ge~~~i~G~nGsGKSTL-l~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~  101 (232)
T cd03300          23 IKEGEFFTLLGPSGCGKTTL-LRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK  101 (232)
T ss_pred             ECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC
Confidence            67999999999999999999 9999999999999999988744321 1234577777665554443443332211000  


Q ss_pred             -----Hh---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHH-HHHHHHH
Q 013567          217 -----CR---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALR-KMSGNAS  267 (440)
Q Consensus       217 -----~~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~-~L~~lak  267 (440)
                           ..   ..-.+.+-++......+ .++++  |++++...+|++                    ...+. .|..+.+
T Consensus       102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~lS~--G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~  178 (232)
T cd03300         102 LPKAEIKERVAEALDLVQLEGYANRKP-SQLSG--GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK  178 (232)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence                 00   00011122222222221 33433  666666666665                    22333 3334444


Q ss_pred             hcCCEEEEEeccccccc
Q 013567          268 KAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       268 ~~~~tVI~inhl~~~ig  284 (440)
                      +.+.|||+++|....+.
T Consensus       179 ~~~~tiii~sh~~~~~~  195 (232)
T cd03300         179 ELGITFVFVTHDQEEAL  195 (232)
T ss_pred             HcCCEEEEEeCCHHHHH
Confidence            46899999999987554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.03  E-value=1.9e-09  Score=102.07  Aligned_cols=67  Identities=18%  Similarity=0.165  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG  206 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~  206 (440)
                      -+.+|++++|.|+||+||||| ++++.+...+..|.++++++......+.+.+++.+++..+....++
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~   99 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTL-LRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLST   99 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcH
Confidence            478999999999999999999 9999999999999999988754332233446666555444333333

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.03  E-value=1.1e-09  Score=101.54  Aligned_cols=59  Identities=20%  Similarity=0.383  Sum_probs=47.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-----hhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-----SYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-----~~a~~lGv~~~~l  198 (440)
                      -+++|++++|.|||||||||| ++++.+...+..|.+++++......     .+.+.+++.+++.
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   77 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTL-LLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP   77 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence            478999999999999999999 9999999999999999988654211     2345577777654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.03  E-value=7e-10  Score=110.84  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=85.3

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--------------------------C-hhhhhh
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--------------------------D-PSYSKA  190 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--------------------------~-~~~a~~  190 (440)
                      ==|.+|++++|.|+|||||||| ++++.++.++..|.++++++...                          . ..+.+.
T Consensus        28 l~i~~Ge~v~iiG~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (305)
T PRK13651         28 VEINQGEFIAIIGQTGSGKTTF-IEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR  106 (305)
T ss_pred             EEEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhc
Confidence            3578999999999999999999 99999999999999999765321                          1 124566


Q ss_pred             hcccccce--eecCCCCHHHHHH---------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHH
Q 013567          191 LGVDVENL--IVCQPDNGEMALE---------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQA  252 (440)
Q Consensus       191 lGv~~~~l--~i~~~~~~ee~l~---------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~a  252 (440)
                      +|+.+++.  .++. .++.+.+.               .+.+++.     .+-++ .+.... ...+++  |++|+...+
T Consensus       107 ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--GqkqrvalA  177 (305)
T PRK13651        107 VGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIE-----LVGLDESYLQRS-PFELSG--GQKRRVALA  177 (305)
T ss_pred             eEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-hhhCCH--HHHHHHHHH
Confidence            88888753  2222 24333222               1222222     22222 111222 244554  777777777


Q ss_pred             HHH--------------------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          253 RLM--------------------SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       253 r~l--------------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      +++                    ...+..+...+++.+.|||+++|..+.+..
T Consensus       178 ~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~  230 (305)
T PRK13651        178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE  230 (305)
T ss_pred             HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence            776                    223333333334569999999999875543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.03  E-value=1.2e-09  Score=103.07  Aligned_cols=57  Identities=26%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l  198 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++...  .+.+.+++.+++.
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~   77 (213)
T cd03235          21 EVKPGEFLAIVGPNGAGKSTL-LKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRR   77 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCccHH--HHHhheEEecccc
Confidence            478999999999999999999 99999999999999999876432  2334566665543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.03  E-value=8.3e-10  Score=106.99  Aligned_cols=42  Identities=26%  Similarity=0.559  Sum_probs=38.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      |=+.+|++++|.||||+||||| ++++++...+..|.+++++.
T Consensus        20 ~~i~~Ge~~~i~G~NGsGKSTL-lk~L~G~~~p~~G~i~~~g~   61 (246)
T cd03237          20 GSISESEVIGILGPNGIGKTTF-IKMLAGVLKPDEGDIEIELD   61 (246)
T ss_pred             CCcCCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCCeEEECCc
Confidence            6689999999999999999999 99999999988888888764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.02  E-value=1.7e-09  Score=105.84  Aligned_cols=140  Identities=12%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l  210 (440)
                      -+++|++++|.|+||+||||| +++++++..+..|.++++++.....      .+.+.+++.+++.  .+....++.+.+
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l  111 (265)
T TIGR02769        33 SIEEGETVGLLGRSGCGKSTL-ARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII  111 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHH
Confidence            468999999999999999999 9999999999999999998754321      1234578777764  233334444332


Q ss_pred             HH----------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          211 EI----------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       211 ~~----------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                      ..                +..+++     .+-++ .+.... ..++++  |++|+...+|++                  
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~~-~~~LSg--Ge~qrv~laral~~~p~illLDEPt~~LD~  183 (265)
T TIGR02769       112 GEPLRHLTSLDESEQKARIAELLD-----MVGLRSEDADKL-PRQLSG--GQLQRINIARALAVKPKLIVLDEAVSNLDM  183 (265)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            11                111111     12221 111111 234444  777777777776                  


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYY  287 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~  287 (440)
                         ..++..|..+.++.+.|||+++|..+.+...+
T Consensus       184 ~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~  218 (265)
T TIGR02769       184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFC  218 (265)
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHh
Confidence               23444455555556899999999987654333

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.02  E-value=1.8e-09  Score=105.22  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=49.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCC--------hhhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFD--------PSYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~--------~~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -|++|++++|+||||+||||| ++++++...+.   .|.++++++....        ..+.+.+++.+++..++...++.
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  104 (262)
T PRK09984         26 NIHHGEMVALLGPSGSGKSTL-LRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL  104 (262)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHH
Confidence            367999999999999999999 99999998765   4788998865321        12234577777665544433443

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=6.7e-10  Score=106.62  Aligned_cols=70  Identities=23%  Similarity=0.259  Sum_probs=52.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =-+.+|++++|+|+||+||||| ++++.+...+..|.+++++......    .+.+.+++.+++..++...++.+
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   99 (237)
T PRK11614         26 LHINQGEIVTLIGANGAGKTTL-LGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEE   99 (237)
T ss_pred             EEEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHH
Confidence            3578999999999999999999 9999999999999999988754321    12345777766554444334433

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.02  E-value=1.3e-09  Score=104.86  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h--hhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S--YSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~--~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+.+|++++|.|+||+||||| ++++.+...+..|.+++++......  .  ..+.+++.+++..++...++.+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   96 (242)
T TIGR03411        24 YVDPGELRVIIGPNGAGKTTM-MDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFE   96 (242)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHH
Confidence            477999999999999999999 9999999999999999998643221  1  2234777776655554444443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=7.6e-10  Score=107.53  Aligned_cols=150  Identities=15%  Similarity=0.248  Sum_probs=87.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEMALEI---  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee~l~~---  212 (440)
                      -+++|++++|.|+||+||||| ++++++...+..|.+++++.....  . .+.+.+++.+++..+....++.+.+..   
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~  102 (255)
T PRK11231         24 SLPTGKITALIGPNGCGKSTL-LKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRS  102 (255)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccc
Confidence            367999999999999999999 999999998889999998764321  1 234456776665444333333332221   


Q ss_pred             ----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          213 ----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       213 ----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                                      +..++.     .+-++...... ..++++  |++++...++++                    .
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~  174 (255)
T PRK11231        103 PWLSLWGRLSAEDNARVNQAME-----QTRINHLADRR-LTDLSG--GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ  174 (255)
T ss_pred             hhhhhccCCCHHHHHHHHHHHH-----HcCCHHHHcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence                            111111     11122211111 133443  666666666665                    2


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccc
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGI  297 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~  297 (440)
                      ..+..+....++.+.|||+++|..+.+...++.......|+
T Consensus       175 ~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~  215 (255)
T PRK11231        175 VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH  215 (255)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence            23333333333458999999999876654444333333343

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.02  E-value=1.4e-09  Score=102.34  Aligned_cols=69  Identities=25%  Similarity=0.234  Sum_probs=49.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -|++|++++|.|+||+||||| ++++.+...+..|.++++++......+.+.+++.++...+....++.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~   92 (207)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTL-LRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE   92 (207)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence            477999999999999999999 999999998889999998865322223444555554333333334433

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=9.9e-10  Score=108.47  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=82.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC---cEEEEcCCCCCCh---hhhhhhccccccee-ecCCCCHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG---NAMLVDAEHAFDP---SYSKALGVDVENLI-VCQPDNGEMAL  210 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~---~vv~id~E~~~~~---~~a~~lGv~~~~l~-i~~~~~~ee~l  210 (440)
                      =-|++|++++|.||||+||||| ++++++...+..   |.++++++.....   .+.+.+|+.+++.. .+...++.+.+
T Consensus        28 l~i~~Ge~~~I~G~nGaGKSTL-l~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl  106 (282)
T PRK13640         28 FSIPRGSWTALIGHNGSGKSTI-SKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV  106 (282)
T ss_pred             EEEcCCCEEEEECCCCCcHHHH-HHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHH
Confidence            3578999999999999999999 999999988765   7899988764321   23456777766542 22223333322


Q ss_pred             H---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567          211 E---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------  255 (440)
Q Consensus       211 ~---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------  255 (440)
                      .               .+..++..     +-++......+ ..+++  |++++...++++                    
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~-----~~L~~~~~~~~-~~LS~--G~~qrv~laral~~~P~llllDEPt~gLD~~~  178 (282)
T PRK13640        107 AFGLENRAVPRPEMIKIVRDVLAD-----VGMLDYIDSEP-ANLSG--GQKQRVAIAGILAVEPKIIILDESTSMLDPAG  178 (282)
T ss_pred             HhhHHhCCCCHHHHHHHHHHHHHH-----CCChhHhcCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence            2               11112111     11111111121 33333  666666666665                    


Q ss_pred             -HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          256 -SQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       256 -~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                       ..++..|..+.++.+.|||+++|..+.+
T Consensus       179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~  207 (282)
T PRK13640        179 KEQILKLIRKLKKKNNLTVISITHDIDEA  207 (282)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence             2333444444455689999999997654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=1.5e-09  Score=107.42  Aligned_cols=137  Identities=18%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee~  209 (440)
                      =+++|++++|.||||+||||| ++++.++..+..|.++++++....       ..+.+.+|+.+++.  .++ ..++.+.
T Consensus        29 ~i~~Ge~~~iiG~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~  106 (287)
T PRK13641         29 ELEEGSFVALVGHTGSGKSTL-MQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKD  106 (287)
T ss_pred             EEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHH
Confidence            478999999999999999999 999999999999999999875432       12344678777763  222 2344443


Q ss_pred             HHH---------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          210 LEI---------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       210 l~~---------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                      +..               +.+++.     .+-++ .+.... ..++++  |++|+...++++                  
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--Gq~qrl~laral~~~p~lLlLDEPt~gLD~  178 (287)
T PRK13641        107 VEFGPKNFGFSEDEAKEKALKWLK-----KVGLSEDLISKS-PFELSG--GQMRRVAIAGVMAYEPEILCLDEPAAGLDP  178 (287)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHH-----HcCCChhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence            321               111111     12222 111111 234444  777777777776                  


Q ss_pred             --HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                        ...+..+....++.+.|||+++|..+.+..
T Consensus       179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~  210 (287)
T PRK13641        179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAE  210 (287)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence              233333333334568999999999876543

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.02  E-value=1.4e-09  Score=104.54  Aligned_cols=144  Identities=16%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.||||+||||| ++++++..  .+..|.+++++......   .+ ...+++.+++..++...+..+.+..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~  100 (243)
T TIGR01978        22 TVKKGEIHAIMGPNGSGKSTL-SKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRS  100 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence            478999999999999999999 99999984  57889999988754321   11 2236666666555544455443332


Q ss_pred             HHHHHhc-----------------CCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567          213 ADRMCRS-----------------GAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-------------------  255 (440)
Q Consensus       213 i~~l~~~-----------------~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-------------------  255 (440)
                      .......                 .-...+-++ .+....+...+++  |++|+...++++                   
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~  178 (243)
T TIGR01978       101 ALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSG--GEKKRNEILQMALLEPKLAILDEIDSGLDID  178 (243)
T ss_pred             HHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence            1110000                 000111121 1111111112444  777887777776                   


Q ss_pred             -HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                       ...+..+....++.+.|||+++|..+.+..
T Consensus       179 ~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~  209 (243)
T TIGR01978       179 ALKIVAEGINRLREPDRSFLIITHYQRLLNY  209 (243)
T ss_pred             HHHHHHHHHHHHHHCCcEEEEEEecHHHHHh
Confidence             233333333334468999999999875543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.02  E-value=7.5e-10  Score=109.14  Aligned_cols=168  Identities=21%  Similarity=0.249  Sum_probs=111.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-c----CCcEEEEcCCCCCChh-------hhhhhccccccee-ecCCC-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-L----GGNAMLVDAEHAFDPS-------YSKALGVDVENLI-VCQPD-  204 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~----~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~-i~~~~-  204 (440)
                      -+.+|++++|+|.+||||||+++ .+.++.. +    .+|.++|++++.....       +.+.+++.+|+-. -..|. 
T Consensus        27 ~i~~GE~lgiVGESGsGKS~~~~-aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~  105 (316)
T COG0444          27 ELKKGEILGIVGESGSGKSVLAK-AIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM  105 (316)
T ss_pred             EEcCCcEEEEEcCCCCCHHHHHH-HHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh
Confidence            57899999999999999999954 4555553 2    3467888888644321       3445677776632 12221 


Q ss_pred             C-HHHHHHHHHHHHh-----------cCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          205 N-GEMALEIADRMCR-----------SGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       205 ~-~ee~l~~i~~l~~-----------~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                      + .+++.+.+.....           ..-.+.|-|+.   +...+| .+++|  |++|+...|-++              
T Consensus       106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSG--GMrQRV~IAmala~~P~LlIADEPTT  182 (316)
T COG0444         106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSG--GMRQRVMIAMALALNPKLLIADEPTT  182 (316)
T ss_pred             hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCC--cHHHHHHHHHHHhCCCCEEEeCCCcc
Confidence            1 2233222221100           00122344443   445564 77887  888888887776              


Q ss_pred             -------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEe
Q 013567          256 -------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR  310 (440)
Q Consensus       256 -------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~  310 (440)
                             .+++..|+.+.++.|+++|+|||+...+..+++...++-.|+.++......++-.
T Consensus       183 ALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~  244 (316)
T COG0444         183 ALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN  244 (316)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcC
Confidence                   5788888999999999999999999888888888888888888887776555443

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=1.9e-09  Score=106.82  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=86.3

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEM  208 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee  208 (440)
                      -=|++|++++|.|+||+||||| ++++++...+..|.+++++.....       ..+.+.+|+.+++.  .++.. ++.+
T Consensus        27 l~i~~Ge~v~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~~  104 (288)
T PRK13643         27 LEVKKGSYTALIGHTGSGKSTL-LQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE-TVLK  104 (288)
T ss_pred             EEEcCCCEEEEECCCCChHHHH-HHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc-hHHH
Confidence            4578999999999999999999 999999999999999999876421       12455678877764  23332 3333


Q ss_pred             HHHH---------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          209 ALEI---------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       209 ~l~~---------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                      .+..               +.+++.     .+-++ .+.... ...+++  |++|+...++++                 
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~l~-----~~~L~~~~~~~~-~~~LSg--GqkqrvaiA~aL~~~p~illLDEPt~gLD  176 (288)
T PRK13643        105 DVAFGPQNFGIPKEKAEKIAAEKLE-----MVGLADEFWEKS-PFELSG--GQMRRVAIAGILAMEPEVLVLDEPTAGLD  176 (288)
T ss_pred             HHHhHHHHcCCCHHHHHHHHHHHHH-----HcCCChhhccCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEECCccCCC
Confidence            2221               111111     11221 111111 234444  777777777776                 


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                         ...+..+...+++.+.|||+++|..+.+..
T Consensus       177 ~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~  209 (288)
T PRK13643        177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD  209 (288)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence               223333333334468999999999875543

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.01  E-value=1.9e-09  Score=103.44  Aligned_cols=68  Identities=21%  Similarity=0.284  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      |.+|++++|.|+||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..++...++.+
T Consensus        22 i~~Ge~~~i~G~nG~GKStL-l~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e   90 (235)
T cd03299          22 VERGDYFVILGPTGSGKSVL-LETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK   90 (235)
T ss_pred             EcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence            57999999999999999999 9999999999999999998754321 12345777776655554444433

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.01  E-value=2.3e-09  Score=105.60  Aligned_cols=59  Identities=22%  Similarity=0.381  Sum_probs=47.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l  198 (440)
                      =+++|++++|.|+||+||||| ++++++...+..|.+++++.....   ..+.+.+|+.+++.
T Consensus        26 ~i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   87 (277)
T PRK13652         26 IAPRNSRIAVIGPNGAGKSTL-FRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNP   87 (277)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCc
Confidence            468999999999999999999 999999999999999998875432   12445677776653

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.01  E-value=2.1e-09  Score=108.62  Aligned_cols=156  Identities=15%  Similarity=0.188  Sum_probs=99.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCCh---hh----hhhhccccccee--ecCCCCH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFDP---SY----SKALGVDVENLI--VCQPDNG  206 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~~---~~----a~~lGv~~~~l~--i~~~~~~  206 (440)
                      =|++|++++|+|+|||||||| ++++.++..+.   .|.++++++.....   .+    .+.+++.+++..  +.+..+.
T Consensus        38 ~i~~Ge~~~ivG~sGsGKSTL-~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v  116 (330)
T PRK09473         38 SLRAGETLGIVGESGSGKSQT-AFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRV  116 (330)
T ss_pred             EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCH
Confidence            478999999999999999999 89999998875   88899998764321   11    235777777642  2222333


Q ss_pred             HH-H---------------HHHHHHHHhcCCcceEEEecc---cccCCchhhcccchhhhHHHHHHHH------------
Q 013567          207 EM-A---------------LEIADRMCRSGAIDLICVDSV---SALTPRAEIEGEIGMQQIGLQARLM------------  255 (440)
Q Consensus       207 ee-~---------------l~~i~~l~~~~~~~lvVIDsl---~~l~~~~el~~~~g~~q~~~~ar~l------------  255 (440)
                      .+ +               ...+.+++.     .+-++..   ...++ .++++  |++|+...++++            
T Consensus       117 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~-----~vgL~~~~~~~~~~p-~~LSg--G~~QRv~IArAL~~~P~llilDEP  188 (330)
T PRK09473        117 GEQLMEVLMLHKGMSKAEAFEESVRMLD-----AVKMPEARKRMKMYP-HEFSG--GMRQRVMIAMALLCRPKLLIADEP  188 (330)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCCCChHHHhcCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEeCC
Confidence            22 1               122222222     2222211   11232 56665  888888888887            


Q ss_pred             ---------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567          256 ---------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA  303 (440)
Q Consensus       256 ---------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a  303 (440)
                               .+++..|..+.++.+.|||+|+|....+..+++.......|+.+....
T Consensus       189 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~  245 (330)
T PRK09473        189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN  245 (330)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence                     345555666666679999999999876655555555566666655443

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.01  E-value=1.4e-09  Score=102.39  Aligned_cols=69  Identities=19%  Similarity=0.315  Sum_probs=51.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -+++| +++|.||||+||||| +++++++..+..|.++++++....  ..+.+.+++.+++..++...++.+.
T Consensus        22 ~i~~g-~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   92 (211)
T cd03264          22 TLGPG-MYGLLGPNGAGKTTL-MRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF   92 (211)
T ss_pred             EEcCC-cEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence            46789 999999999999999 999999999999999998875432  2234567777766555444454433

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.01  E-value=1.8e-09  Score=118.02  Aligned_cols=153  Identities=13%  Similarity=0.109  Sum_probs=100.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l  210 (440)
                      -+++|++++|+|+|||||||| ++++.++.++..|.++++++.....      .+.+.+++.+++.  .+....++.+.+
T Consensus       346 ~i~~Ge~~~lvG~nGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l  424 (623)
T PRK10261        346 DLWPGETLSLVGESGSGKSTT-GRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI  424 (623)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence            478999999999999999999 9999999999999999988653221      1234678877764  233334444433


Q ss_pred             HH----------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          211 EI----------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       211 ~~----------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                      ..                +.+++     +.+-++ ...... ..++++  |++|+...++++                  
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~L-----~~~gL~~~~~~~~-~~~LSg--GqrQRv~iAraL~~~p~llllDEPts~LD~  496 (623)
T PRK10261        425 MEPLRVHGLLPGKAAAARVAWLL-----ERVGLLPEHAWRY-PHEFSG--GQRQRICIARALALNPKVIIADEAVSALDV  496 (623)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH-----HHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            21                11121     122232 222222 256666  888888888887                  


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                         .+++..|..+.++.+.|||+++|..+.+...++.......|+...
T Consensus       497 ~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~  544 (623)
T PRK10261        497 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE  544 (623)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence               344555555556679999999999887665555555555555543

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.01  E-value=2.3e-09  Score=100.60  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -+++|++++|.|+||+||||| ++++.+...   +..|.+++++......  .+.+.+++.+++..++...++.+.
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~  103 (202)
T cd03233          29 VVKPGEMVLVLGRPGSGCSTL-LKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRET  103 (202)
T ss_pred             EECCCcEEEEECCCCCCHHHH-HHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHH
Confidence            478999999999999999999 999999988   7789999988754322  234457776665444444454443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.01  E-value=2.1e-09  Score=103.55  Aligned_cols=137  Identities=15%  Similarity=0.225  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-----C----hhhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-----D----PSYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-----~----~~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -+.+|++++|.||||+||||| ++++++...+..|.++++++...     .    ..+.+.+++.+++..++...++.+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~  102 (242)
T PRK11124         24 DCPQGETLVLLGPSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN  102 (242)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence            467999999999999999999 99999999999999999987531     1    1134567777776655544454433


Q ss_pred             HHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          210 LEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       210 l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                      +..                +..++.     .+-++...... ...+++  |++|+...+|++                  
T Consensus       103 i~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llilDEPt~~LD~  174 (242)
T PRK11124        103 LIEAPCRVLGLSKDQALARAEKLLE-----RLRLKPYADRF-PLHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDP  174 (242)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence            321                111111     11122111111 133443  666766666665                  


Q ss_pred             --HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          256 --SQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                        ...+..+....++.+.|||+++|....+.
T Consensus       175 ~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  205 (242)
T PRK11124        175 EITAQIVSIIRELAETGITQVIVTHEVEVAR  205 (242)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence              22333333333456899999999977553

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.00  E-value=1.1e-09  Score=107.72  Aligned_cols=136  Identities=20%  Similarity=0.231  Sum_probs=82.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhccccccee-ecCCCCHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENLI-VCQPDNGEMALE--  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l~-i~~~~~~ee~l~--  211 (440)
                      =|++|++++|.|+||+||||| ++++.++.++..|.+++++.....    ..+.+.+|+.+++.. .+...++.+.+.  
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~  102 (274)
T PRK13644         24 VIKKGEYIGIIGKNGSGKSTL-ALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG  102 (274)
T ss_pred             EEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhh
Confidence            478999999999999999999 999999999999999999875432    123456777666532 122223322221  


Q ss_pred             -------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567          212 -------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA  258 (440)
Q Consensus       212 -------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~  258 (440)
                                   .+..++..     +-++...... ..++++  |++|+...++++                    ...
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~  174 (274)
T PRK13644        103 PENLCLPPIEIRKRVDRALAE-----IGLEKYRHRS-PKTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA  174 (274)
T ss_pred             HHHcCCCHHHHHHHHHHHHHH-----CCCHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence                         11222111     1122211111 133443  677777777766                    223


Q ss_pred             HHHHHHHHHhcCCEEEEEecccccc
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      +..+...+++.+.|||+++|..+.+
T Consensus       175 l~~~l~~l~~~g~til~~tH~~~~~  199 (274)
T PRK13644        175 VLERIKKLHEKGKTIVYITHNLEEL  199 (274)
T ss_pred             HHHHHHHHHhCCCEEEEEecCHHHH
Confidence            3333333345689999999998755

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.00  E-value=3.2e-09  Score=104.05  Aligned_cols=59  Identities=24%  Similarity=0.460  Sum_probs=47.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l  198 (440)
                      -|++|++++|.||||+||||| ++++++...+..|.+++++......   .+.+.+++.+++.
T Consensus        31 ~i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   92 (269)
T PRK13648         31 NIPKGQWTSIVGHNGSGKSTI-AKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP   92 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence            478999999999999999999 9999999999999999998754321   2345577766654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.00  E-value=1.8e-09  Score=100.83  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=50.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+.+|++++|.||||+||||| ++++.+...+..|.++++++....  ..+.+.+++.+++..+....++.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   92 (198)
T TIGR01189        22 TLNAGEALQVTGPNGIGKTTL-LRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE   92 (198)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence            377999999999999999999 999999999999999998875322  123345666665544433334433

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.00  E-value=1.1e-09  Score=106.69  Aligned_cols=60  Identities=23%  Similarity=0.355  Sum_probs=46.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhccccccee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLI  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~  199 (440)
                      -+++|++++|.|+||+||||| ++++++..++..|.++++++....   ..+.+.+++.+++..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~   86 (258)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTL-LRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS   86 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCc
Confidence            467999999999999999999 999999999999999998864322   123345666665543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.00  E-value=1.7e-09  Score=106.85  Aligned_cols=59  Identities=20%  Similarity=0.399  Sum_probs=48.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-C----hhhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-D----PSYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-~----~~~a~~lGv~~~~l  198 (440)
                      =|++|++++|.|+||+||||| ++++.++..+..|.++++++... .    ..+.+.+|+.+++.
T Consensus        28 ~i~~Ge~~~i~G~nGaGKSTL-l~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~   91 (283)
T PRK13636         28 NIKKGEVTAILGGNGAGKSTL-FQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP   91 (283)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence            468999999999999999999 99999999999999999987642 1    12445678877764

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.00  E-value=3.7e-10  Score=107.21  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=54.3

Q ss_pred             CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcc--cccceeecCC
Q 013567          128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGV--DVENLIVCQP  203 (440)
Q Consensus       128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv--~~~~l~i~~~  203 (440)
                      |+..+|.+- =-+++|++++|.||||+||||| ++++.+..+|+.|.+++.+++....  ....+.|+  .+|+..+++.
T Consensus        16 Gl~Al~~Vs-l~v~~Gei~~LIGPNGAGKTTl-fNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~   93 (250)
T COG0411          16 GLTAVNDVS-LEVRPGEIVGLIGPNGAGKTTL-FNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG   93 (250)
T ss_pred             CEEEEecee-EEEcCCeEEEEECCCCCCceee-eeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence            344444432 3578999999999999999999 9999999999999999999964332  22223333  3455444444


Q ss_pred             CCH
Q 013567          204 DNG  206 (440)
Q Consensus       204 ~~~  206 (440)
                      .++
T Consensus        94 lTV   96 (250)
T COG0411          94 LTV   96 (250)
T ss_pred             CcH
Confidence            443

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.99  E-value=3.8e-09  Score=97.41  Aligned_cols=114  Identities=19%  Similarity=0.171  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCH--HHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG--EMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~--ee~l~~i~~l  216 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.+++++..         +++.+++..    .+.  .+.+..++.+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~~----LSgGq~qrv~laral   86 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTA-VKILAGQLIPNGDNDEWDGIT---------PVYKPQYID----LSGGELQRVAIAAAL   86 (177)
T ss_pred             EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCcEEEECCEE---------EEEEcccCC----CCHHHHHHHHHHHHH
Confidence            568999999999999999999 999999999999999987642         333333322    332  2344555555


Q ss_pred             HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +.  +++++++|....-....             ..   ..+...+..+.++.+.|||+++|..+.+.
T Consensus        87 ~~--~p~lllLDEPts~LD~~-------------~~---~~l~~~l~~~~~~~~~tiiivsH~~~~~~  136 (177)
T cd03222          87 LR--NATFYLFDEPSAYLDIE-------------QR---LNAARAIRRLSEEGKKTALVVEHDLAVLD  136 (177)
T ss_pred             hc--CCCEEEEECCcccCCHH-------------HH---HHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            43  67899999877655311             01   12222333333444589999999986553

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.99  E-value=1e-09  Score=104.12  Aligned_cols=69  Identities=22%  Similarity=0.299  Sum_probs=51.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =+++|++++|.|+||+||||| ++++.+...+..|.+++++.....  +    .+.+.+++.+++..++...++.+
T Consensus        27 ~i~~G~~~~I~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~  101 (220)
T TIGR02982        27 EINPGEIVILTGPSGSGKTTL-LTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQ  101 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHH
Confidence            368999999999999999999 999999998999999998875421  1    13456777776655444334433

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.99  E-value=3.1e-09  Score=104.78  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhcccccce
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENL  198 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l  198 (440)
                      =-|++|++++|.|+||+||||| ++++.+...+..|.++++++....    ..+.+.+|+.+++.
T Consensus        31 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~   94 (280)
T PRK13633         31 LEVKKGEFLVILGRNGSGKSTI-AKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP   94 (280)
T ss_pred             EEEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecCh
Confidence            3578999999999999999999 999999999999999999876533    12345677777653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.99  E-value=2.5e-09  Score=102.23  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=45.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCCCCCChhh-hhhhcccccce
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAEHAFDPSY-SKALGVDVENL  198 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E~~~~~~~-a~~lGv~~~~l  198 (440)
                      +++|++++|.||||+||||| ++++++...+    ..|.++++++....... .+.+++.+++.
T Consensus         9 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   71 (230)
T TIGR02770         9 LKRGEVLALVGESGSGKSLT-CLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP   71 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCc
Confidence            67999999999999999999 9999999987    78889998865432222 24567766654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.99  E-value=5.3e-09  Score=96.33  Aligned_cols=128  Identities=20%  Similarity=0.293  Sum_probs=80.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccc--------cee--ecCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVE--------NLI--VCQPDN  205 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~--------~l~--i~~~~~  205 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.++++++....  . .+.+.+++.++        ...  .....+
T Consensus        21 ~i~~G~~~~l~G~nGsGKStL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS   99 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTL-LKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS   99 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence            478999999999999999999 999999999999999998865432  1 12333444322        100  011122


Q ss_pred             H--HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          206 G--EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       206 ~--ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      .  .+.+.+++.++.  +++++++|....-....             ..   ..+...|..+.++.+.|||+++|..+.+
T Consensus       100 ~G~~qrl~laral~~--~p~llllDEP~~~LD~~-------------~~---~~~~~~l~~~~~~~~~tiii~sh~~~~~  161 (180)
T cd03214         100 GGERQRVLLARALAQ--EPPILLLDEPTSHLDIA-------------HQ---IELLELLRRLARERGKTVVMVLHDLNLA  161 (180)
T ss_pred             HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHH-------------HH---HHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            2  233445555543  68899999877655311             01   1222333334344489999999998755


Q ss_pred             cc
Q 013567          284 GV  285 (440)
Q Consensus       284 g~  285 (440)
                      ..
T Consensus       162 ~~  163 (180)
T cd03214         162 AR  163 (180)
T ss_pred             HH
Confidence            43

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.99  E-value=3.5e-09  Score=102.66  Aligned_cols=70  Identities=17%  Similarity=0.287  Sum_probs=51.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCC----Ch-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAF----DP-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~----~~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.||||+||||| ++++++...+     ..|.++++++...    .. .+.+.+++.+++..++...++.+
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  104 (253)
T PRK14267         26 KIPQNGVFALMGPSGCGKSTL-LRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD  104 (253)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHH
Confidence            578999999999999999999 9999999876     3889999887543    11 23456777777655554444443


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       105 n  105 (253)
T PRK14267        105 N  105 (253)
T ss_pred             H
Confidence            3

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.99  E-value=2.1e-09  Score=108.57  Aligned_cols=154  Identities=16%  Similarity=0.155  Sum_probs=96.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCcEEEEcCCCCCCh---hh----hhhhccccccee--ecCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK----LGGNAMLVDAEHAFDP---SY----SKALGVDVENLI--VCQPDN  205 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~----~~~~vv~id~E~~~~~---~~----a~~lGv~~~~l~--i~~~~~  205 (440)
                      -|.+|++++|+|+|||||||| ++++.++..    +..|.++++++.....   .+    .+.+++.+++..  +.+..+
T Consensus        29 ~i~~Ge~~~ivG~sGsGKSTL-l~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~t  107 (330)
T PRK15093         29 TLTEGEIRGLVGESGSGKSLI-AKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER  107 (330)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcccc
Confidence            478999999999999999999 899999875    4678899988754321   11    235777777643  222233


Q ss_pred             HHHHHH---------------------HHHHHHhcCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH------
Q 013567          206 GEMALE---------------------IADRMCRSGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM------  255 (440)
Q Consensus       206 ~ee~l~---------------------~i~~l~~~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l------  255 (440)
                      +.+.+.                     .+.+++     +.+-++.   +..-. ..++++  |++|+...++++      
T Consensus       108 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-----~~~gL~~~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~l  179 (330)
T PRK15093        108 VGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELL-----HRVGIKDHKDAMRSF-PYELTE--GECQKVMIAIALANQPRL  179 (330)
T ss_pred             HHHHHHHHHHhhhccccccccHHHHHHHHHHHH-----HHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHCCCCE
Confidence            322221                     111111     1222221   11222 245665  888888888887      


Q ss_pred             ---------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          256 ---------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       256 ---------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                                     .+++..|..+.++.++|||+|+|....+..+++.......|+.+..
T Consensus       180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~  240 (330)
T PRK15093        180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET  240 (330)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence                           3445555555555799999999998776555555555556655443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.99  E-value=1.7e-09  Score=101.60  Aligned_cols=68  Identities=24%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.++++++....  ..+.+.+++.+++..+....++.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~   92 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSL-LRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL   92 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence            478999999999999999999 999999999999999998865432  12334555555544333333443

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.99  E-value=2.9e-09  Score=107.08  Aligned_cols=137  Identities=16%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------------------hhhhhhhcccccce
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------------------PSYSKALGVDVENL  198 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------------------~~~a~~lGv~~~~l  198 (440)
                      =-|++|++++|+|+|||||||| ++++.++..+..|.+++++.....                   ..+.+.+|+.+++.
T Consensus        47 l~i~~Ge~~~I~G~nGsGKSTL-l~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~  125 (320)
T PRK13631         47 YTFEKNKIYFIIGNSGSGKSTL-VTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP  125 (320)
T ss_pred             EEEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECc
Confidence            4578999999999999999999 999999999999999998754321                   12455678877653


Q ss_pred             --eecCCCCHHHHH---------------HHHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----
Q 013567          199 --IVCQPDNGEMAL---------------EIADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-----  255 (440)
Q Consensus       199 --~i~~~~~~ee~l---------------~~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-----  255 (440)
                        .++. .++.+.+               ..+..++.     .+-++ .+..-. ..++++  |++|+...+|++     
T Consensus       126 ~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--GqkqRvaiAraL~~~p~  196 (320)
T PRK13631        126 EYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLN-----KMGLDDSYLERS-PFGLSG--GQKRRVAIAGILAIQPE  196 (320)
T ss_pred             hhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHH-----HcCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCC
Confidence              2332 2332222               12222222     12222 111111 134444  788888888876     


Q ss_pred             ---------------HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          256 ---------------SQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       256 ---------------~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                                     .+.+..+...+++.+.|||+++|..+.+.
T Consensus       197 iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~  240 (320)
T PRK13631        197 ILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL  240 (320)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence                           22333333333345899999999987543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.99  E-value=2.8e-09  Score=104.43  Aligned_cols=142  Identities=17%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l  210 (440)
                      -|.+|++++|.||||+||||| ++++.+...+..|.+++++......      .+.+.+++.+++.  .+....+..+.+
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l  112 (268)
T PRK10419         34 SLKSGETVALLGRSGCGKSTL-ARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII  112 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHH
Confidence            468999999999999999999 9999999989999999988754321      1345677777764  233333333322


Q ss_pred             H----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567          211 E----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------------  255 (440)
Q Consensus       211 ~----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------------  255 (440)
                      .                .+..++...++.-    .+.... ...+++  |++++...++++                   
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~-~~~LS~--Ge~qrl~laral~~~p~lllLDEPt~~LD~~  185 (268)
T PRK10419        113 REPLRHLLSLDKAERLARASEMLRAVDLDD----SVLDKR-PPQLSG--GQLQRVCLARALAVEPKLLILDEAVSNLDLV  185 (268)
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHcCCCh----hHhhCC-CccCCh--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence            1                1122222111110    011111 123333  777777777766                   


Q ss_pred             --HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                        ..++..|..+.++.+.|||+++|..+.+...++
T Consensus       186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d  220 (268)
T PRK10419        186 LQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ  220 (268)
T ss_pred             HHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence              123334444545568999999999876644333

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.99  E-value=2.5e-09  Score=99.70  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=39.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      =+++|++++|.|+||+||||| ++++++...+..|.++++++..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i   64 (195)
T PRK13541         22 TFLPSAITYIKGANGCGKSSL-LRMIAGIMQPSSGNIYYKNCNI   64 (195)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCccc
Confidence            467999999999999999999 9999999999999999998754

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.98  E-value=1.9e-09  Score=105.58  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=47.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l  198 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++.....   .+.+.+++.+++.
T Consensus        35 ~i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   96 (267)
T PRK15112         35 TLREGQTLAIIGENGSGKSTL-AKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP   96 (267)
T ss_pred             EecCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCc
Confidence            578999999999999999999 9999999999999999988654321   1234577766653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.98  E-value=2.7e-09  Score=113.89  Aligned_cols=153  Identities=13%  Similarity=0.119  Sum_probs=94.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hh--hhhhhcccccceeecCCCCHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PS--YSKALGVDVENLIVCQPDNGEMALE---  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~--~a~~lGv~~~~l~i~~~~~~ee~l~---  211 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++++....  ..  ..+.+|+.+++..++...++.+.+.   
T Consensus        33 ~i~~Ge~~~liG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  111 (510)
T PRK15439         33 TLHAGEVHALLGGNGAGKSTL-MKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL  111 (510)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence            478999999999999999999 999999999999999998865322  11  1234677777655544445444322   


Q ss_pred             --------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHH
Q 013567          212 --------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMS  263 (440)
Q Consensus       212 --------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~  263 (440)
                              .+..++...+     ++...... ..++++  |++|+...++++                    ...+..+.
T Consensus       112 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l  183 (510)
T PRK15439        112 PKRQASMQKMKQLLAALG-----CQLDLDSS-AGSLEV--ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI  183 (510)
T ss_pred             ccchHHHHHHHHHHHHcC-----CCccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence                    1222222111     22211111 134444  677777777765                    22333333


Q ss_pred             HHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          264 GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       264 ~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      ...++.+.|||+++|..+.+...++.......|....
T Consensus       184 ~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  220 (510)
T PRK15439        184 RELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL  220 (510)
T ss_pred             HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            3334458999999999887665565555555665543

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.98  E-value=3.2e-09  Score=107.05  Aligned_cols=155  Identities=14%  Similarity=0.108  Sum_probs=98.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCCCCCCh---hh----hhhhccccccee--ecCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAEHAFDP---SY----SKALGVDVENLI--VCQPDN  205 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E~~~~~---~~----a~~lGv~~~~l~--i~~~~~  205 (440)
                      -|++|++++|+|+|||||||| ++++.++..+    ..|.+++++++....   .+    .+.+++.+++..  +.+..+
T Consensus        29 ~i~~Ge~~~lvG~sGsGKSTL-~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~  107 (326)
T PRK11022         29 SVKQGEVVGIVGESGSGKSVS-SLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT  107 (326)
T ss_pred             EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence            578999999999999999999 8899998763    578899998764322   11    234777777642  222233


Q ss_pred             HH-HHHH---------------HHHHHHhcCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567          206 GE-MALE---------------IADRMCRSGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM-----------  255 (440)
Q Consensus       206 ~e-e~l~---------------~i~~l~~~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l-----------  255 (440)
                      +. ++.+               .+.++++     .+-++.   ....+ ..++++  |++|+...++++           
T Consensus       108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~-----~~gL~~~~~~l~~~-p~~LSg--Gq~QRv~iArAL~~~P~llilDE  179 (326)
T PRK11022        108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLN-----QVGIPDPASRLDVY-PHQLSG--GMSQRVMIAMAIACRPKLLIADE  179 (326)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeC
Confidence            32 2111               1222222     222221   11222 256665  888888888887           


Q ss_pred             ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                                .+++..|..+.++.+.|||+++|....+..+++.......|+.+...
T Consensus       180 Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g  236 (326)
T PRK11022        180 PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG  236 (326)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence                      34555566666668999999999987665555555556666665543

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.98  E-value=4.4e-09  Score=101.77  Aligned_cols=70  Identities=19%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -+++|++++|.|+||+||||| ++++++...+     ..|.+++++.....   ..+.+.+|+.+++..+....++.+.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~en  102 (250)
T PRK14247         25 EIPDNTITALMGPSGSGKSTL-LRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFEN  102 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHH
Confidence            467999999999999999999 9999999863     57889998875432   1234567777776544444444443

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=3.2e-09  Score=104.60  Aligned_cols=138  Identities=14%  Similarity=0.208  Sum_probs=84.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEM  208 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee  208 (440)
                      =-|++|++++|.||||+||||| ++++++...+..|.++++++....       ..+.+.+++.+++.  .+.. .++.+
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e  105 (280)
T PRK13649         28 LTIEDGSYTAFIGHTGSGKSTI-MQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLK  105 (280)
T ss_pred             EEEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHH
Confidence            3578999999999999999999 999999999999999998865321       12345677777663  2232 34433


Q ss_pred             HHHH---------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          209 ALEI---------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       209 ~l~~---------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                      .+..               +..++.     .+-++ ...... ..++++  |++|+...++++                 
T Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD  177 (280)
T PRK13649        106 DVAFGPQNFGVSQEEAEALAREKLA-----LVGISESLFEKN-PFELSG--GQMRRVAIAGILAMEPKILVLDEPTAGLD  177 (280)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            3221               111111     11121 111111 134444  777777777776                 


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                         .+.+..+....++.+.|||+++|..+.+..
T Consensus       178 ~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~  210 (280)
T PRK13649        178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVAN  210 (280)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence               223333333233458999999999875543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.97  E-value=2.1e-09  Score=98.76  Aligned_cols=124  Identities=18%  Similarity=0.166  Sum_probs=83.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHH-------
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEM-------  208 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee-------  208 (440)
                      =-+++|++++|.|+||+||||| ++++.+...+..|.+++++.....  ..+.+.+++.+++..+.. .++.+       
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS  100 (178)
T cd03247          23 LELKQGEKIALLGRSGSGKSTL-LQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFS  100 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCC
Confidence            3578999999999999999999 999999999999999998864321  123455777776655443 23322       


Q ss_pred             -----HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          209 -----ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       209 -----~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                           .+.+++.++  .+++++++|....-....             ..+.+.+.++   .+ . .+.|||+++|..+.+
T Consensus       101 ~G~~qrv~laral~--~~p~~lllDEP~~~LD~~-------------~~~~l~~~l~---~~-~-~~~tii~~sh~~~~~  160 (178)
T cd03247         101 GGERQRLALARILL--QDAPIVLLDEPTVGLDPI-------------TERQLLSLIF---EV-L-KDKTLIWITHHLTGI  160 (178)
T ss_pred             HHHHHHHHHHHHHh--cCCCEEEEECCcccCCHH-------------HHHHHHHHHH---HH-c-CCCEEEEEecCHHHH
Confidence                 233444444  368899999887665310             0112333333   33 2 379999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.97  E-value=4.6e-09  Score=100.12  Aligned_cols=55  Identities=25%  Similarity=0.347  Sum_probs=44.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVEN  197 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~  197 (440)
                      +.+|++++|.|+|||||||| ++++++...+..|.++++++...  ...+.+++.+++
T Consensus         3 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~   57 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTL-LRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQR   57 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCccch--HhhCcEEEeccc
Confidence            67999999999999999999 99999999999999999987532  123345665554

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.97  E-value=2.8e-09  Score=101.16  Aligned_cols=142  Identities=18%  Similarity=0.231  Sum_probs=96.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH-------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE-------  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~-------  211 (440)
                      -+++|++.++.|+||+||||. ++++.++..+..|.+-+++.. ..+....++|+-|+.--+++..++++.+.       
T Consensus        24 ~v~~G~i~GllG~NGAGKTTt-fRmILglle~~~G~I~~~g~~-~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG  101 (300)
T COG4152          24 EVPPGEIFGLLGPNGAGKTTT-FRMILGLLEPTEGEITWNGGP-LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG  101 (300)
T ss_pred             eecCCeEEEeecCCCCCccch-HHHHhccCCccCceEEEcCcc-hhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence            468999999999999999999 999999999988888877653 33444567788776544444444332211       


Q ss_pred             ---------------------------------------HHHHHHhcCCcceEEEecc-cccCCchhhcccchhhhHHHH
Q 013567          212 ---------------------------------------IADRMCRSGAIDLICVDSV-SALTPRAEIEGEIGMQQIGLQ  251 (440)
Q Consensus       212 ---------------------------------------~i~~l~~~~~~~lvVIDsl-~~l~~~~el~~~~g~~q~~~~  251 (440)
                                                             .+..+  -+.++++++|.. +.+-| .             .
T Consensus       102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisav--iHePeLlILDEPFSGLDP-V-------------N  165 (300)
T COG4152         102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLDP-V-------------N  165 (300)
T ss_pred             CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHH--hcCCCEEEecCCccCCCh-h-------------h
Confidence                                                   11111  146888998863 22322 0             1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          252 ARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       252 ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                          .+.++....-.++.|.||||.+|.++.+..+|++......|..+-+.
T Consensus       166 ----~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G  212 (300)
T COG4152         166 ----VELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG  212 (300)
T ss_pred             ----HHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEec
Confidence                23344444555788999999999999998888777666666655443

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.97  E-value=4.1e-10  Score=103.88  Aligned_cols=162  Identities=14%  Similarity=0.176  Sum_probs=109.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhh-hhcccccceeecCCCCHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSK-ALGVDVENLIVCQPDNGEMALEIAD  214 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~-~lGv~~~~l~i~~~~~~ee~l~~i~  214 (440)
                      .+.+|+++++.||||+||||. ..++.++.+++.|.++++..+.....   +++ .+|+-++.-.++...++++.+..+-
T Consensus        26 ~v~~GEiVGLLGPNGAGKTT~-Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vl  104 (243)
T COG1137          26 EVNSGEIVGLLGPNGAGKTTT-FYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVL  104 (243)
T ss_pred             EEcCCcEEEEECCCCCCceeE-EEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHH
Confidence            467999999999999999998 99999999999999999999865543   222 3677788888877777766544322


Q ss_pred             HHHhcC------C------cceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHH
Q 013567          215 RMCRSG------A------IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKM  262 (440)
Q Consensus       215 ~l~~~~------~------~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L  262 (440)
                      +.....      .      .+-+-|..+..-. ...++|  |++.+...||++                    -.-++++
T Consensus       105 E~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~-a~sLSG--GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~i  181 (243)
T COG1137         105 EIREKDLKKAERKEELDALLEEFHITHLRDSK-AYSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRI  181 (243)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHhchHHHhcCc-cccccc--chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHH
Confidence            221100      0      0111122222211 133344  666666777776                    2456777


Q ss_pred             HHHHHhcCCEEEEEeccccccccccCCceeecccceeeeece
Q 013567          263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFAS  304 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~  304 (440)
                      ...++..|+-|+++.|..++.-..++....+..|..+.+...
T Consensus       182 I~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p  223 (243)
T COG1137         182 IKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP  223 (243)
T ss_pred             HHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCH
Confidence            888889999999999997665556666666666766666543

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.97  E-value=2.5e-09  Score=100.22  Aligned_cols=69  Identities=23%  Similarity=0.377  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-----hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-----SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-----~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++....  .     .+.+.+++.++...++...++.+
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e   95 (206)
T TIGR03608        20 TIEKGKMYAIIGESGSGKSTL-LNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEE   95 (206)
T ss_pred             EEeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHH
Confidence            367999999999999999999 999999999999999999876321  1     13445777666655444444433

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.97  E-value=4.2e-09  Score=101.75  Aligned_cols=68  Identities=21%  Similarity=0.385  Sum_probs=51.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+||+||||| ++++.+...+.     .|.+++++.....    . .+.+.+++.+++..++. .++.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  100 (247)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTL-LRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYD  100 (247)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHH
Confidence            478999999999999999999 99999999876     8999998875432    1 23456787777655444 44433

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.97  E-value=4.9e-09  Score=100.01  Aligned_cols=135  Identities=18%  Similarity=0.231  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEMALEIA--  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i--  213 (440)
                      =+++|++++|.||||+||||| ++++.+...+..|.++++++....  . .+.+.+++.+++..+++ .++.+.+...  
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~  106 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTL-LKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQ  106 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHh
Confidence            478999999999999999999 999999999999999998865322  1 23456777776655443 3444333211  


Q ss_pred             -----------HHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------------HHHH-H
Q 013567          214 -----------DRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL-R  260 (440)
Q Consensus       214 -----------~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l-~  260 (440)
                                 ..++.     .+-++ .+.... ..++++  |++++...++++                    .+.+ .
T Consensus       107 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  178 (225)
T PRK10247        107 IRNQQPDPAIFLDDLE-----RFALPDTILTKN-IAELSG--GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE  178 (225)
T ss_pred             hcCCChHHHHHHHHHH-----HcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence                       11111     11111 111111 133333  667777777765                    2233 3


Q ss_pred             HHHHHHHhcCCEEEEEecccccc
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      .|..+.++.+.|||+++|..+.+
T Consensus       179 ~l~~~~~~~~~tvii~sh~~~~~  201 (225)
T PRK10247        179 IIHRYVREQNIAVLWVTHDKDEI  201 (225)
T ss_pred             HHHHHHHhcCCEEEEEECChHHH
Confidence            34444455689999999997644

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.97  E-value=4.5e-09  Score=102.29  Aligned_cols=140  Identities=17%  Similarity=0.244  Sum_probs=82.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+|||||||| ++++.+...+     ..|.+++++.....    . .+.+.+++.+++..++. .++.+
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  111 (258)
T PRK14268         34 QIPKNSVTALIGPSGCGKSTF-IRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD  111 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence            478999999999999999999 9999998764     67889998765321    1 23456787777655544 45444


Q ss_pred             HHHHH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          209 ALEIA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       209 ~l~~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                      .+...               ..++...+..-. ++..... +...+++  |++|+...+|++                  
T Consensus       112 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~-~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~  187 (258)
T PRK14268        112 NVAYGPRIHGANKKDLDGVVENALRSAALWDE-TSDRLKS-PALSLSG--GQQQRLCIARTLAVKPKIILFDEPTSALDP  187 (258)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-hhhhhcC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence            33321               111111111000 0111011 1134443  777877778776                  


Q ss_pred             --HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                        ...+.++...+++ ++|||+++|..+.+..
T Consensus       188 ~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~  218 (258)
T PRK14268        188 ISTARIEDLIMNLKK-DYTIVIVTHNMQQAAR  218 (258)
T ss_pred             HHHHHHHHHHHHHhh-CCEEEEEECCHHHHHH
Confidence              2233333333333 7999999999875543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.97  E-value=2.5e-09  Score=112.59  Aligned_cols=162  Identities=18%  Similarity=0.205  Sum_probs=111.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC----CcEEEEcCCCCCChh-------hhhhhcccccce-eecCC-CC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG----GNAMLVDAEHAFDPS-------YSKALGVDVENL-IVCQP-DN  205 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~----~~vv~id~E~~~~~~-------~a~~lGv~~~~l-~i~~~-~~  205 (440)
                      -+.+|++++|+|.+||||||+ .+.+.++...+    +|.+++++.+.....       +.+++++.+++- ..+.| .+
T Consensus        31 ~v~~GE~lgIvGESGsGKSt~-a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~t  109 (539)
T COG1123          31 EVEPGEILGIVGESGSGKSTL-ALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMT  109 (539)
T ss_pred             EecCCcEEEEEcCCCCCHHHH-HHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhh
Confidence            467999999999999999999 56666776655    688888887433221       345567776652 22223 11


Q ss_pred             ----------------HHHHHHHHHHHHhcCCcceEEEeccc--ccCCchhhcccchhhhHHHHHHHH------------
Q 013567          206 ----------------GEMALEIADRMCRSGAIDLICVDSVS--ALTPRAEIEGEIGMQQIGLQARLM------------  255 (440)
Q Consensus       206 ----------------~ee~l~~i~~l~~~~~~~lvVIDsl~--~l~~~~el~~~~g~~q~~~~ar~l------------  255 (440)
                                      .++....+.++++     .|-+..-.  ..+| .+++|  |++|+...|+++            
T Consensus       110 Ig~Qi~E~~~~h~~~~~~ea~~~a~elL~-----~Vgl~~~~~~~~yP-heLSG--G~rQRv~iAmALa~~P~LLIaDEP  181 (539)
T COG1123         110 IGDQIREALRLHGKGSRAEARKRAVELLE-----QVGLPDPERRDRYP-HQLSG--GMRQRVMIAMALALKPKLLIADEP  181 (539)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHH-----HcCCCChhhhccCC-cccCc--hHHHHHHHHHHHhCCCCEEEECCC
Confidence                            2333333333333     22232222  2354 78887  889988888887            


Q ss_pred             ---------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEE
Q 013567          256 ---------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEI  309 (440)
Q Consensus       256 ---------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l  309 (440)
                               .+++..|+.+.++.|+++|+|||+...+..+++...++-.|..++......++-
T Consensus       182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence                     578888999999999999999999998888777777777888877766544443

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.96  E-value=4.9e-09  Score=93.24  Aligned_cols=108  Identities=20%  Similarity=0.262  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH--HHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE--MALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e--e~l~~i~~l  216 (440)
                      -+++|+++.|.|+||+||||| ++++.+...+..|.+++++.        ..+++.++       .+.-  +.+.+++.+
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~~~--------~~i~~~~~-------lS~G~~~rv~laral   85 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTL-LKLIAGELEPDEGIVTWGST--------VKIGYFEQ-------LSGGEKMRLALAKLL   85 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCceEEEECCe--------EEEEEEcc-------CCHHHHHHHHHHHHH
Confidence            578999999999999999999 99999999999999999863        23333332       3332  334455655


Q ss_pred             HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +.  +++++++|....-....            . ...+.+.+       ++.+.|||+++|..+.+.
T Consensus        86 ~~--~p~illlDEP~~~LD~~------------~-~~~l~~~l-------~~~~~til~~th~~~~~~  131 (144)
T cd03221          86 LE--NPNLLLLDEPTNHLDLE------------S-IEALEEAL-------KEYPGTVILVSHDRYFLD  131 (144)
T ss_pred             hc--CCCEEEEeCCccCCCHH------------H-HHHHHHHH-------HHcCCEEEEEECCHHHHH
Confidence            43  68899999876655310            0 11122222       233579999999876553

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=2.3e-09  Score=105.21  Aligned_cols=59  Identities=12%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l  198 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.+++++.....     ..+.+.+++.+++.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   86 (271)
T PRK13638         23 DFSLSPVTGLVGANGCGKSTL-FMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP   86 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeCh
Confidence            477999999999999999999 999999999999999998875421     12345677776653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=1.9e-09  Score=106.14  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccccccee-ecCCCCHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLI-VCQPDNGEMALE---  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~-i~~~~~~ee~l~---  211 (440)
                      =+.+|++++|+|+||+||||| ++++.+...+..|.++++++.....   .+.+.+|+.+++.. .+...++.+.+.   
T Consensus        29 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~  107 (277)
T PRK13642         29 SITKGEWVSIIGQNGSGKSTT-ARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM  107 (277)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhH
Confidence            467999999999999999999 9999999999999999998754321   23456777776532 222223332221   


Q ss_pred             ------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHH
Q 013567          212 ------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQA  258 (440)
Q Consensus       212 ------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~  258 (440)
                                  .+..++.     .+-++.+.... ...+++  |++++...+|++                     ..+
T Consensus       108 ~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l  179 (277)
T PRK13642        108 ENQGIPREEMIKRVDEALL-----AVNMLDFKTRE-PARLSG--GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI  179 (277)
T ss_pred             HHcCCCHHHHHHHHHHHHH-----HCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence                        1111111     11111111111 133443  666666666665                     233


Q ss_pred             HHHHHHHHHhcCCEEEEEecccccc
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      +..|..+.++.+.|||+++|..+.+
T Consensus       180 ~~~l~~l~~~~g~tiil~sH~~~~~  204 (277)
T PRK13642        180 MRVIHEIKEKYQLTVLSITHDLDEA  204 (277)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            4444445555699999999998754

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=4.2e-09  Score=103.38  Aligned_cols=60  Identities=22%  Similarity=0.312  Sum_probs=48.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL  198 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l  198 (440)
                      --+++|++++|.||||+||||| ++++.++..+..|.++++++.....   .+.+.+++.+++.
T Consensus        30 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~   92 (271)
T PRK13632         30 FEINEGEYVAILGHNGSGKSTI-SKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP   92 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCH
Confidence            4678999999999999999999 9999999999999999988754321   2345577766653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.96  E-value=4e-09  Score=112.83  Aligned_cols=137  Identities=16%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc-CCCC-----CC--h--hhhhhhcccccceeecCCCCHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD-AEHA-----FD--P--SYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id-~E~~-----~~--~--~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      +++|++++|.|||||||||| ++++.++.++..|.++++ ++..     ..  .  .+.+.+|+.+++..+....++.+.
T Consensus       307 i~~Ge~~~l~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~  385 (520)
T TIGR03269       307 VKEGEIFGIVGTSGAGKTTL-SKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN  385 (520)
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence            78999999999999999999 999999998889999995 4321     11  0  123457887777555554555444


Q ss_pred             HHH--------------HHHHHhcCCcceEEEec-----ccccCCchhhcccchhhhHHHHHHHH---------------
Q 013567          210 LEI--------------ADRMCRSGAIDLICVDS-----VSALTPRAEIEGEIGMQQIGLQARLM---------------  255 (440)
Q Consensus       210 l~~--------------i~~l~~~~~~~lvVIDs-----l~~l~~~~el~~~~g~~q~~~~ar~l---------------  255 (440)
                      +..              +..++.     .+-++.     +.... ..++++  |++|+...++++               
T Consensus       386 l~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lLllDEPt~~  457 (520)
T TIGR03269       386 LTEAIGLELPDELARMKAVITLK-----MVGFDEEKAEEILDKY-PDELSE--GERHRVALAQVLIKEPRIVILDEPTGT  457 (520)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHH-----hCCCCCccchhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            332              111111     122221     11112 245555  888888888877               


Q ss_pred             ------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                            ..++..|..++++.+.|||+++|..+.+..
T Consensus       458 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~  493 (520)
T TIGR03269       458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD  493 (520)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence                  234444445555679999999999876644

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.95  E-value=3e-09  Score=99.73  Aligned_cols=61  Identities=25%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i  200 (440)
                      =+++|++++|.|+||+||||| ++++.+...+..|.++++++....  ..+.+.+++.+++..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~   84 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTL-LRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI   84 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecccccc
Confidence            368999999999999999999 999999999999999998765322  2234456665554433

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=1.7e-09  Score=107.21  Aligned_cols=138  Identities=12%  Similarity=0.146  Sum_probs=84.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-------C-hhhhhhhccccccee--ecCCCCHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-------D-PSYSKALGVDVENLI--VCQPDNGE  207 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-------~-~~~a~~lGv~~~~l~--i~~~~~~e  207 (440)
                      =-+++|++++|.|||||||||| ++++.++..+..|.++++++...       . ..+.+.+++.+++..  +. +.++.
T Consensus        32 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~  109 (289)
T PRK13645         32 LTFKKNKVTCVIGTTGSGKSTM-IQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIE  109 (289)
T ss_pred             EEEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHH
Confidence            3578999999999999999999 99999999999999999886532       1 123445777666531  22 12333


Q ss_pred             HHHHH---------------HHHHHhcCCcceEEE-ecccccCCchhhcccchhhhHHHHHHHH----------------
Q 013567          208 MALEI---------------ADRMCRSGAIDLICV-DSVSALTPRAEIEGEIGMQQIGLQARLM----------------  255 (440)
Q Consensus       208 e~l~~---------------i~~l~~~~~~~lvVI-Dsl~~l~~~~el~~~~g~~q~~~~ar~l----------------  255 (440)
                      +.+..               +..++.     .+-+ +.+.... ..++++  |++|+...+|++                
T Consensus       110 enl~~~~~~~~~~~~~~~~~~~~ll~-----~~~L~~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~lLlLDEPt~~L  181 (289)
T PRK13645        110 KDIAFGPVNLGENKQEAYKKVPELLK-----LVQLPEDYVKRS-PFELSG--GQKRRVALAGIIAMDGNTLVLDEPTGGL  181 (289)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHH-----HcCCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence            32221               111111     1111 1111111 134444  777777777776                


Q ss_pred             ----HH-HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 ----SQ-ALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 ----~~-~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                          .+ ++..|..+.++.+.|||+++|..+.+..
T Consensus       182 D~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~  216 (289)
T PRK13645        182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLR  216 (289)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence                22 3333444555568999999999875543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.95  E-value=3.4e-09  Score=112.83  Aligned_cols=153  Identities=16%  Similarity=0.212  Sum_probs=94.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h-hhhhhcccccceeecCCCCHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S-YSKALGVDVENLIVCQPDNGEMALE---  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~-~a~~lGv~~~~l~i~~~~~~ee~l~---  211 (440)
                      -+.+|++++|+|||||||||| ++++++...+..|.+++++.....  . . +.+.+++.+++..++...++.+.+.   
T Consensus        26 ~i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  104 (501)
T PRK10762         26 NVYPGRVMALVGENGAGKSTM-MKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGR  104 (501)
T ss_pred             EEcCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcc
Confidence            467999999999999999999 999999999999999998865422  1 1 2345777776544443334433222   


Q ss_pred             ----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567          212 ----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------  255 (440)
Q Consensus       212 ----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------  255 (440)
                                      .+.+++..     +-+....... ..++++  |++|+...++++                    
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~  176 (501)
T PRK10762        105 EFVNRFGRIDWKKMYAEADKLLAR-----LNLRFSSDKL-VGELSI--GEQQMVEIAKVLSFESKVIIMDEPTDALTDTE  176 (501)
T ss_pred             ccccccCccCHHHHHHHHHHHHHH-----cCCCCCccCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence                            11222211     1122111111 234444  777777777766                    


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      ...+.++...+++.+.|||+++|..+.+...++.......|+...
T Consensus       177 ~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~  221 (501)
T PRK10762        177 TESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA  221 (501)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            233333333334568999999999887766666555555665543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.95  E-value=4.7e-09  Score=100.89  Aligned_cols=67  Identities=22%  Similarity=0.424  Sum_probs=50.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      +.+|++++|.|+||+||||| ++++.+...+..|.++++++..... ...+.+++.++...+++..+..
T Consensus        23 i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   90 (237)
T TIGR00968        23 VPTGSLVALLGPSGSGKSTL-LRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR   90 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence            77999999999999999999 9999999988899999988754322 2234566666655444433433

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.95  E-value=5.5e-09  Score=99.35  Aligned_cols=129  Identities=23%  Similarity=0.272  Sum_probs=80.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccc-----cceeec---CCCCHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDV-----ENLIVC---QPDNGEM--  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~-----~~l~i~---~~~~~ee--  208 (440)
                      -+.+|+.++|.|+|||||||| +++++++.+|+.|.+.+++.-+  +.+.-..|+++     +|+.+.   ...+.++  
T Consensus        49 ~i~~Ge~vGiiG~NGaGKSTL-lkliaGi~~Pt~G~v~v~G~v~--~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~  125 (249)
T COG1134          49 EIYKGERVGIIGHNGAGKSTL-LKLIAGIYKPTSGKVKVTGKVA--PLIELGAGFDPELTGRENIYLRGLILGLTRKEID  125 (249)
T ss_pred             EEeCCCEEEEECCCCCcHHHH-HHHHhCccCCCCceEEEcceEe--hhhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence            468999999999999999999 9999999999999999887643  22223334443     233221   1111111  


Q ss_pred             -----HHHHH----------------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHH
Q 013567          209 -----ALEIA----------------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRK  261 (440)
Q Consensus       209 -----~l~~i----------------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~  261 (440)
                           +.+..                      -.+.....++++++|.+.+.-          |.      ....+...+
T Consensus       126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG----------D~------~F~~K~~~r  189 (249)
T COG1134         126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG----------DA------AFQEKCLER  189 (249)
T ss_pred             HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC----------CH------HHHHHHHHH
Confidence                 11110                      011123468999999987653          21      223444555


Q ss_pred             HHHHHHhcCCEEEEEecccccccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYY  287 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~  287 (440)
                      +..+.+ .+.|||+++|....+...|
T Consensus       190 l~e~~~-~~~tiv~VSHd~~~I~~~C  214 (249)
T COG1134         190 LNELVE-KNKTIVLVSHDLGAIKQYC  214 (249)
T ss_pred             HHHHHH-cCCEEEEEECCHHHHHHhc
Confidence            555444 4599999999988776533

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=4.4e-09  Score=103.44  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=48.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-h----hhhhhhcccccce
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-P----SYSKALGVDVENL  198 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~----~~a~~lGv~~~~l  198 (440)
                      =-|.+|++++|.||||+||||| ++++.+...+..|.++++++.... .    .+.+.+++.+++.
T Consensus        23 l~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~   87 (275)
T PRK13639         23 FKAEKGEMVALLGPNGAGKSTL-FLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP   87 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeCh
Confidence            3578999999999999999999 999999999999999999876421 1    2345677777764

>PRK04296 thymidine kinase; Provisional

Probab=98.95  E-value=1.2e-08  Score=95.16  Aligned_cols=137  Identities=16%  Similarity=0.216  Sum_probs=91.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC--CCC-CChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA--EHA-FDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS  219 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~--E~~-~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~  219 (440)
                      |.++.|+||+|+||||++++++..+...+..++++..  +.. ....++.++|+....+.+   ...++++..+..  ..
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~---~~~~~~~~~~~~--~~   76 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV---SSDTDIFELIEE--EG   76 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEe---CChHHHHHHHHh--hC
Confidence            7899999999999999999999999888888888843  221 122356677766555322   344555555554  45


Q ss_pred             CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      +.+++|+||.++.+..                     +.+..|.+.++..+++||++....+-.+..|+.+      ..+
T Consensus        77 ~~~dvviIDEaq~l~~---------------------~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~------~~L  129 (190)
T PRK04296         77 EKIDCVLIDEAQFLDK---------------------EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGS------PYL  129 (190)
T ss_pred             CCCCEEEEEccccCCH---------------------HHHHHHHHHHHHcCCeEEEEecCcccccCcCchH------HHH
Confidence            6789999999965421                     1123456666788999999988876444333221      233


Q ss_pred             eeeceEEEEEee
Q 013567          300 KFFASVRLEIRS  311 (440)
Q Consensus       300 ~~~a~~rl~l~r  311 (440)
                      ...++....++.
T Consensus       130 ~~~aD~V~~l~~  141 (190)
T PRK04296        130 LALADKVTELKA  141 (190)
T ss_pred             HHhcCeEEEeeE
Confidence            445666665554

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.95  E-value=5.6e-09  Score=101.18  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=50.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =|++|++++|+|+|||||||| ++++++...  +   ..|.++++++....    . .+.+.+++.+++..++...++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  104 (252)
T PRK14256         26 DFPENSVTAIIGPSGCGKSTV-LRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYD  104 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHH
Confidence            368999999999999999999 999999875  3   46889998875432    1 23455777777655554444433

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.94  E-value=6.4e-09  Score=101.86  Aligned_cols=69  Identities=16%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -|++|++++|.|+|||||||| ++++.+...+     ..|.++++++....    . .+.+.+++.+++..++.. ++.+
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e  118 (267)
T PRK14235         41 DIPEKTVTAFIGPSGCGKSTF-LRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYE  118 (267)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHH
Confidence            478999999999999999999 9999999864     68899999875432    1 234557777766544432 4444


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       119 n  119 (267)
T PRK14235        119 N  119 (267)
T ss_pred             H
Confidence            3

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.94  E-value=6.4e-09  Score=100.80  Aligned_cols=69  Identities=16%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+||+||||| ++++.++..     +..|.++++++....    . .+.+.+++.+++..++. .++.+
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  105 (253)
T PRK14242         28 EFEQNQVTALIGPSGCGKSTF-LRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFE  105 (253)
T ss_pred             EEeCCCEEEEECCCCCCHHHH-HHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHH
Confidence            478999999999999999999 999999864     467889998865422    1 23456787777655444 35444


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       106 n  106 (253)
T PRK14242        106 N  106 (253)
T ss_pred             H
Confidence            3

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.93  E-value=4.4e-09  Score=111.69  Aligned_cols=153  Identities=12%  Similarity=0.126  Sum_probs=92.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALE---  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~---  211 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.++++++.....    .+.+.+++.+++..+....++.+.+.   
T Consensus        20 ~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~   98 (491)
T PRK10982         20 KVRPHSIHALMGENGAGKSTL-LKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR   98 (491)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccc
Confidence            478999999999999999999 9999999999999999988753211    12345677666543333333332221   


Q ss_pred             ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                                     .+..++...+     ++...... ..++++  |++|+...++++                    .
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~  170 (491)
T PRK10982         99 YPTKGMFVDQDKMYRDTKAIFDELD-----IDIDPRAK-VATLSV--SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV  170 (491)
T ss_pred             ccccccccCHHHHHHHHHHHHHHcC-----CCCCccCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence                           1222222111     12111111 234444  777777777766                    2


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      +.+..+...+++.+.|||+++|..+.+...++.......|+...
T Consensus       171 ~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~  214 (491)
T PRK10982        171 NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA  214 (491)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence            23333333334568999999999887665555555555665543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.93  E-value=4.5e-09  Score=112.15  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=91.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h--hhhhhcccccceeecCCCCHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S--YSKALGVDVENLIVCQPDNGEMAL----  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~--~a~~lGv~~~~l~i~~~~~~ee~l----  210 (440)
                      -+++|++++|.|||||||||| +++++++..+..|.++++++.....  .  +.+.+++.+++..++...++.+.+    
T Consensus        27 ~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  105 (510)
T PRK09700         27 TVYPGEIHALLGENGAGKSTL-MKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGR  105 (510)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcc
Confidence            478999999999999999999 9999999999999999988654321  1  223477766654433333332222    


Q ss_pred             ------------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          211 ------------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       211 ------------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                                        ..+..++...+     ++...... ..++++  |++|+...++++                 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--G~~qrv~ia~al~~~p~lllLDEPt~~LD  177 (510)
T PRK09700        106 HLTKKVCGVNIIDWREMRVRAAMMLLRVG-----LKVDLDEK-VANLSI--SHKQMLEIAKTLMLDAKVIIMDEPTSSLT  177 (510)
T ss_pred             ccccccccccccCHHHHHHHHHHHHHHcC-----CCCCcccc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence                              11222222111     11111111 134444  777777777766                 


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                         ...+..+...+++.+.|||+++|..+.+...++.......|+..
T Consensus       178 ~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~  224 (510)
T PRK09700        178 NKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV  224 (510)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence               22333333333445899999999987766555555555555543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.93  E-value=6.2e-09  Score=94.72  Aligned_cols=112  Identities=18%  Similarity=0.218  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeec-------------CCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVC-------------QPDN  205 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~-------------~~~~  205 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.+++++.        +.+++.+++..+.             ...+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~~~--------~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS   93 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSL-FRALAGLWPWGSGRIGMPEG--------EDLLFLPQRPYLPLGTLREQLIYPWDDVLS   93 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCC--------ceEEEECCCCccccccHHHHhhccCCCCCC
Confidence            478999999999999999999 99999999888888888653        2233333322211             1112


Q ss_pred             H--HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          206 G--EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       206 ~--ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      .  .+.+..++.++  .+++++++|....-....             ..+.+.+.+       ++.+.|+|+++|..+
T Consensus        94 ~G~~~rv~laral~--~~p~~lllDEPt~~LD~~-------------~~~~l~~~l-------~~~~~tiiivsh~~~  149 (166)
T cd03223          94 GGEQQRLAFARLLL--HKPKFVFLDEATSALDEE-------------SEDRLYQLL-------KELGITVISVGHRPS  149 (166)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEECCccccCHH-------------HHHHHHHHH-------HHhCCEEEEEeCChh
Confidence            1  12233445444  367899999877655310             011222333       233689999999865

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.92  E-value=5.8e-09  Score=111.31  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHHH-
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMALE-  211 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l~-  211 (440)
                      +++|++++|.|||||||||| ++++++..++..|.++++++....  .  .+.+.+|+.+++.   .+....++.+.+. 
T Consensus       286 i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~  364 (510)
T PRK09700        286 VCRGEILGFAGLVGSGRTEL-MNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI  364 (510)
T ss_pred             EcCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence            78999999999999999999 999999999999999998865322  1  1234567766642   2222223322211 


Q ss_pred             -----------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------
Q 013567          212 -----------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------  255 (440)
Q Consensus       212 -----------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------  255 (440)
                                             .+.+++..     +-+. ...... ..++++  |++|+...++++            
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~-~~~LSg--Gq~qrv~lAral~~~p~lLlLDEP  436 (510)
T PRK09700        365 SRSLKDGGYKGAMGLFHEVDEQRTAENQREL-----LALKCHSVNQN-ITELSG--GNQQKVLISKWLCCCPEVIIFDEP  436 (510)
T ss_pred             ccccccccccccccccChHHHHHHHHHHHHh-----cCCCCCCccCc-cccCCh--HHHHHHHHHHHHhcCCCEEEECCC
Confidence                                   12222221     1121 111111 245555  888888888877            


Q ss_pred             --------HHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567          256 --------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYY  287 (440)
Q Consensus       256 --------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~  287 (440)
                              .+.+.++...+++.+.|||+++|..+.+...+
T Consensus       437 t~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~  476 (510)
T PRK09700        437 TRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVC  476 (510)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC
Confidence                    23333333333356999999999987655433

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.92  E-value=5.8e-09  Score=97.72  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=80.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMAL--  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l--  210 (440)
                      -+.+|++++|.|+||+||||| ++++++..  .+..|.++++++.....   .+ ...+++.+++..+....+..+.+  
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~  100 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTL-AKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY  100 (200)
T ss_pred             EECCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence            467999999999999999999 99999984  57888999998754321   12 23367766654444333333322  


Q ss_pred             -------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013567          211 -------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLN  277 (440)
Q Consensus       211 -------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~in  277 (440)
                                   ..++.++  .+++++++|....-....             -.+.+.+.   |..+ ++.+.|||+++
T Consensus       101 ~~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD~~-------------~~~~l~~~---L~~~-~~~~~tiii~s  161 (200)
T cd03217         101 VNEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLDID-------------ALRLVAEV---INKL-REEGKSVLIIT  161 (200)
T ss_pred             ccccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCCHH-------------HHHHHHHH---HHHH-HHCCCEEEEEe
Confidence                         2333333  368899999877655310             01122233   3333 34589999999


Q ss_pred             ccccccc
Q 013567          278 QIRYKIG  284 (440)
Q Consensus       278 hl~~~ig  284 (440)
                      |..+.+.
T Consensus       162 h~~~~~~  168 (200)
T cd03217         162 HYQRLLD  168 (200)
T ss_pred             cCHHHHH
Confidence            9876543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.92  E-value=8.9e-09  Score=100.17  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=39.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      -+.+|++++|.|+||+||||| ++++++...+..|.++++++.
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~   69 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTL-LNALSARLAPDAGEVHYRMRD   69 (258)
T ss_pred             EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCcc
Confidence            378999999999999999999 999999999999999999875

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.92  E-value=6.3e-09  Score=110.44  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=89.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee--c-C-----CCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV--C-Q-----PDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i--~-~-----~~~~e  207 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.+++++.....   ..+.+.+|+.+++..+  . .     ..++.
T Consensus        25 ~i~~Ge~~~liG~nGsGKSTL-l~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~  103 (490)
T PRK10938         25 TLNAGDSWAFVGANGSGKSAL-ARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA  103 (490)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence            478999999999999999999 999999999988999887754322   1233457776654321  1 0     12222


Q ss_pred             HHH-------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHH
Q 013567          208 MAL-------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QAL  259 (440)
Q Consensus       208 e~l-------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l  259 (440)
                      +.+       ..+..++..     +-++...... ..++++  |++|+...++++                    . .+.
T Consensus       104 ~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~  175 (490)
T PRK10938        104 EIIQDEVKDPARCEQLAQQ-----FGITALLDRR-FKYLST--GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA  175 (490)
T ss_pred             HhcccchhHHHHHHHHHHH-----cCCHhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence            221       122222221     1122221222 234444  666666666665                    2 233


Q ss_pred             HHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          260 RKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       260 ~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      ..|..+ ++.+.|||+++|..+.+...++.......|+...
T Consensus       176 ~~l~~~-~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~  215 (490)
T PRK10938        176 ELLASL-HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE  215 (490)
T ss_pred             HHHHHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence            333333 3458999999999877665555555555565543

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.91  E-value=5.8e-09  Score=100.04  Aligned_cols=62  Identities=26%  Similarity=0.368  Sum_probs=48.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|.|+||+||||| ++++++...+..|.++++++....  . .+.+.+++.+++..++
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~   88 (237)
T cd03252          24 RIKPGEVVGIVGRSGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF   88 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc
Confidence            468999999999999999999 999999999999999998864321  1 2345577777665443

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.91  E-value=8.9e-09  Score=100.02  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCCCCCChh-hhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAEHAFDPS-YSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E~~~~~~-~a~~lGv~~~~l  198 (440)
                      =+++|++++|.|+||+||||| ++++.+...+    ..|.+++++....... +.+.+++.+++.
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~   88 (254)
T PRK10418         25 TLQRGRVLALVGGSGSGKSLT-CAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP   88 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCC
Confidence            467999999999999999999 9999999887    7888999876542222 224567766654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.90  E-value=6.2e-09  Score=102.23  Aligned_cols=43  Identities=26%  Similarity=0.469  Sum_probs=39.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.++++++..
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i   71 (272)
T PRK15056         29 TVPGGSIAALVGVNGSGKSTL-FKALMGFVRLASGKISILGQPT   71 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEh
Confidence            477999999999999999999 9999999999999999988653

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.90  E-value=1.2e-08  Score=98.81  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+||+||||| ++++++...+     ..|.++++++....    . .+.+.+++.+++..++. .++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e  103 (251)
T PRK14270         26 PIYENKITALIGPSGCGKSTF-LRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYD  103 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHH
Confidence            478999999999999999999 9999998764     57889998875432    1 23456788777655543 44443


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       104 n  104 (251)
T PRK14270        104 N  104 (251)
T ss_pred             H
Confidence            3

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.90  E-value=8.5e-09  Score=100.48  Aligned_cols=62  Identities=19%  Similarity=0.390  Sum_probs=47.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC-----hhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~  201 (440)
                      -|++|++++|.||||+||||| ++++++...     +..|.++++++....     ..+.+.+++.+++..++
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~  106 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTL-LRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF  106 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence            578999999999999999999 999999876     367889998865421     12345677777665443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.90  E-value=6.5e-09  Score=98.50  Aligned_cols=62  Identities=26%  Similarity=0.417  Sum_probs=47.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~  201 (440)
                      =+++|++++|.||||+||||| ++++.+...+..|.++++++....  . .+.+.+++.+++..++
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~   90 (220)
T cd03245          26 TIRAGEKVAIIGRVGSGKSTL-LKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF   90 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccc
Confidence            368999999999999999999 999999998899999998864321  1 1334567766654433

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.89  E-value=7.5e-09  Score=110.24  Aligned_cols=154  Identities=14%  Similarity=0.135  Sum_probs=93.9

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhcccccceeecCCCCHHHHHH--
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENLIVCQPDNGEMALE--  211 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l~i~~~~~~ee~l~--  211 (440)
                      =-+++|++++|.||||+||||| ++++.+...+..|.+++++.....  .  .+.+.+|+.+++..++...++.+.+.  
T Consensus        25 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  103 (501)
T PRK11288         25 FDCRAGQVHALMGENGAGKSTL-LKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLG  103 (501)
T ss_pred             EEEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhc
Confidence            3678999999999999999999 999999999999999998764321  1  13345777666544433333322221  


Q ss_pred             ----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567          212 ----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------  255 (440)
Q Consensus       212 ----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------  255 (440)
                                      .+..++...+     ++...... ..++++  |++|+...++++                    
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~  175 (501)
T PRK11288        104 QLPHKGGIVNRRLLNYEAREQLEHLG-----VDIDPDTP-LKYLSI--GQRQMVEIAKALARNARVIAFDEPTSSLSARE  175 (501)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHcC-----CCCCcCCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence                            1222222111     22111111 244554  777777777776                    


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      .+.+.++....++.+.|||+++|..+.+...++.......|....
T Consensus       176 ~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~  220 (501)
T PRK11288        176 IEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA  220 (501)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            223333333334568999999999876655555555555665543

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.89  E-value=6.4e-09  Score=100.15  Aligned_cols=131  Identities=18%  Similarity=0.271  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc---ceee-------------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE---NLIV-------------  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~---~l~i-------------  200 (440)
                      -||+|+++++.|+||+||||+ ++++.+...+.+|.+-+.+..+++..  +.+++++.+.   .++.             
T Consensus        46 ~IP~G~ivgflGaNGAGKSTt-LKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~  124 (325)
T COG4586          46 EIPKGEIVGFLGANGAGKSTT-LKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL  124 (325)
T ss_pred             ecCCCcEEEEEcCCCCcchhh-HHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence            689999999999999999999 99999999999999999999888753  5555554331   1111             


Q ss_pred             -cCCC--C----HH---HHH---------------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567          201 -CQPD--N----GE---MAL---------------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG  249 (440)
Q Consensus       201 -~~~~--~----~e---e~l---------------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~  249 (440)
                       ++..  .    .+   +++                     +.+..+  -+.++++++|..+-=..            ..
T Consensus       125 Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaL--Lh~p~VLfLDEpTvgLD------------V~  190 (325)
T COG4586         125 IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAAL--LHPPKVLFLDEPTVGLD------------VN  190 (325)
T ss_pred             HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHh--cCCCcEEEecCCccCcc------------hh
Confidence             1000  0    00   111                     011111  24678888887653321            00


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      .|    ..+.+-|+....++++||++++|..+++...|.
T Consensus       191 aq----~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~  225 (325)
T COG4586         191 AQ----ANIREFLKEYNEERQATVLLTTHIFDDIATLCD  225 (325)
T ss_pred             HH----HHHHHHHHHHHHhhCceEEEEecchhhHHHhhh
Confidence            11    233444577788999999999999988766444

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.89  E-value=1.4e-08  Score=98.89  Aligned_cols=63  Identities=16%  Similarity=0.300  Sum_probs=47.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~  202 (440)
                      =+++|++++|.|+||+||||| ++++++...  +   ..|.++++++....    . .+.+.+++.+++..++.
T Consensus        34 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  106 (259)
T PRK14274         34 SIPENEVTAIIGPSGCGKSTF-IKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP  106 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence            378999999999999999999 999999876  3   47888998875421    1 23456787777655443

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.89  E-value=7e-09  Score=99.54  Aligned_cols=60  Identities=18%  Similarity=0.359  Sum_probs=46.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccccee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLI  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~  199 (440)
                      =+++|++++|.|+|||||||| ++++.+...+..|.++++++....  . .+.+.+++.+++..
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~   87 (238)
T cd03249          25 TIPPGKTVALVGSSGCGKSTV-VSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV   87 (238)
T ss_pred             EecCCCEEEEEeCCCCCHHHH-HHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh
Confidence            368999999999999999999 999999999999999998864321  1 23345666665543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.89  E-value=1.1e-08  Score=98.92  Aligned_cols=67  Identities=16%  Similarity=0.329  Sum_probs=49.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -|++|++++|.|+|||||||| ++++.++..+     ..|.++++++....    . .+.+.+++.+++..++. .++.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~  101 (250)
T PRK14240         25 DIEENQVTALIGPSGCGKSTF-LRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIY  101 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHH
Confidence            477999999999999999999 9999998652     47889999875432    1 23445777777654443 3443

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.89  E-value=1.3e-08  Score=99.08  Aligned_cols=70  Identities=16%  Similarity=0.339  Sum_probs=51.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|||||||||| ++++++...+     ..|.+++++.....    . .+.+.+++.+++..++...++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL-l~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~  104 (258)
T PRK14241         26 NIEPRSVTAFIGPSGCGKSTV-LRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD  104 (258)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHH
Confidence            478999999999999999999 9999999864     58889998865321    1 23456777777655544444444


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       105 n  105 (258)
T PRK14241        105 N  105 (258)
T ss_pred             H
Confidence            3

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=7.8e-09  Score=110.22  Aligned_cols=153  Identities=15%  Similarity=0.189  Sum_probs=92.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALE-  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~-  211 (440)
                      -+.+|++++|.|||||||||| ++++++...+  ..|.+++++......    .+.+.+|+.+++..++...++.+.+. 
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  105 (506)
T PRK13549         27 KVRAGEIVSLCGENGAGKSTL-MKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFL  105 (506)
T ss_pred             EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhh
Confidence            478999999999999999999 9999999885  689999988654321    12345777776654443334333221 


Q ss_pred             -----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567          212 -----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------------  255 (440)
Q Consensus       212 -----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------------  255 (440)
                                       .+..++..     +-++...... ..++++  |++|+...++++                   
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~LD~~  177 (506)
T PRK13549        106 GNEITPGGIMDYDAMYLRAQKLLAQ-----LKLDINPATP-VGNLGL--GQQQLVEIAKALNKQARLLILDEPTASLTES  177 (506)
T ss_pred             cccccccCCcCHHHHHHHHHHHHHH-----cCCCCCcccc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence                             12222221     1122211111 244554  777777777766                   


Q ss_pred             -HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                       ...+..+...+++.+.|||+++|..+.+...++.......|+...
T Consensus       178 ~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~  223 (506)
T PRK13549        178 ETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG  223 (506)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence             223333333334568999999999876655555555555565543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.88  E-value=1.4e-08  Score=98.31  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      =+++|++++|.|+||+||||| ++++.+...+..|.++++++.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~   66 (253)
T TIGR02323        25 DLYPGEVLGIVGESGSGKSTL-LGCLAGRLAPDHGTATYIMRS   66 (253)
T ss_pred             EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEEeccc
Confidence            478999999999999999999 999999999999999998764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.88  E-value=9.8e-09  Score=98.19  Aligned_cols=62  Identities=26%  Similarity=0.550  Sum_probs=48.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++....   ..+.+.+++.+++..++
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~   88 (234)
T cd03251          24 DIPAGETVALVGPSGSGKSTL-VNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF   88 (234)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeec
Confidence            478999999999999999999 999999999999999998865322   12345577777665443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.88  E-value=1.2e-08  Score=98.81  Aligned_cols=68  Identities=25%  Similarity=0.397  Sum_probs=50.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -|.+|++++|.||||+||||| ++++++...+.     .|.++++++....    . .+.+.+++.+++..++.. ++.+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e  103 (251)
T PRK14249         26 DFPERQITAIIGPSGCGKSTL-LRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFD  103 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHH
Confidence            367999999999999999999 99999998775     5889998875432    1 234567887777655432 4443

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.88  E-value=4.1e-09  Score=106.26  Aligned_cols=149  Identities=17%  Similarity=0.257  Sum_probs=92.4

Q ss_pred             EEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH-------h-
Q 013567          148 IFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC-------R-  218 (440)
Q Consensus       148 I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~-------~-  218 (440)
                      |.|||||||||| +++++++.++..|.++++++..... ...+.+++.+++..++...++.+.+.......       . 
T Consensus         1 l~G~nGsGKSTL-l~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTL-LRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            579999999999 9999999999999999998754322 23456888887766665556555433211000       0 


Q ss_pred             --cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCEEEE
Q 013567          219 --SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAGCTLIF  275 (440)
Q Consensus       219 --~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~tVI~  275 (440)
                        ..-.+.+-++.+..-. ..++++  |++|+...+|++                     ..+...|..+.++.+.|||+
T Consensus        80 ~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii  156 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRK-PHQLSG--GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF  156 (325)
T ss_pred             HHHHHHHHcCCcchhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence              0001122223222222 245554  788888888876                     23334445555667999999


Q ss_pred             EeccccccccccCCceeecccceee
Q 013567          276 LNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       276 inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      ++|..+.+..+++.......|+...
T Consensus       157 vTHd~~e~~~~~d~i~vl~~G~i~~  181 (325)
T TIGR01187       157 VTHDQEEAMTMSDRIAIMRKGKIAQ  181 (325)
T ss_pred             EeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999876655555445555555543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.87  E-value=1.1e-08  Score=109.04  Aligned_cols=141  Identities=15%  Similarity=0.216  Sum_probs=86.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhccccccee---ecCCCCHHHHHH-
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENLI---VCQPDNGEMALE-  211 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l~---i~~~~~~ee~l~-  211 (440)
                      +++|++++|.|||||||||| ++++.+..++..|.++++++....  .  ...+.+++.+++..   ++...++.+.+. 
T Consensus       276 i~~Ge~~~iiG~NGsGKSTL-lk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~  354 (501)
T PRK11288        276 VRAGEIVGLFGLVGAGRSEL-MKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI  354 (501)
T ss_pred             EeCCcEEEEEcCCCCCHHHH-HHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence            68999999999999999999 999999998899999998764321  1  12234666665431   232333322211 


Q ss_pred             --------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------
Q 013567          212 --------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------------  255 (440)
Q Consensus       212 --------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------------  255 (440)
                                          .+.+++.     .+-++ ....-. ...+++  |++|+...++++               
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gq~qrl~la~al~~~p~lllLDEPt~~  426 (501)
T PRK11288        355 SARRHHLRAGCLINNRWEAENADRFIR-----SLNIKTPSREQL-IMNLSG--GNQQKAILGRWLSEDMKVILLDEPTRG  426 (501)
T ss_pred             ccchhhcccccccChHHHHHHHHHHHH-----hcCcccCCccCc-cccCCH--HHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence                                1122222     12221 111111 245555  788888888876               


Q ss_pred             -----HHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567          256 -----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN  289 (440)
Q Consensus       256 -----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~  289 (440)
                           .+.+.++...+++.+.|||+++|..+.+...++.
T Consensus       427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~  465 (501)
T PRK11288        427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR  465 (501)
T ss_pred             CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence                 2344444444456699999999998876554443

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.87  E-value=1.4e-08  Score=99.24  Aligned_cols=62  Identities=18%  Similarity=0.332  Sum_probs=48.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|.|+||+||||| ++++.+...+     ..|.++++++....    . .+.+.+++.+++..++
T Consensus        30 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  101 (261)
T PRK14263         30 PIRKNEITGFIGPSGCGKSTV-LRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF  101 (261)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence            478999999999999999999 9999999865     57889999876432    1 2345577777665444

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.87  E-value=9.1e-09  Score=98.54  Aligned_cols=62  Identities=27%  Similarity=0.537  Sum_probs=48.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.++++++....  . .+.+.+++.+++..++
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~   87 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKSTI-LRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF   87 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh
Confidence            478999999999999999999 999999999999999998865432  1 2344577776665443

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.87  E-value=5.6e-09  Score=98.93  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=82.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      =+++|++++|.||||+||||| ++++++...+..|.++++++.....       .+.+.+++.+++..++ +.++.+.+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~  100 (218)
T cd03290          23 RIPTGQLTMIVGQVGCGKSSL-LLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENIT  100 (218)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHh
Confidence            467999999999999999999 9999999999999999988753221       1234567766665444 233333222


Q ss_pred             H--------HHHHHhcCCcceEEEec-------ccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567          212 I--------ADRMCRSGAIDLICVDS-------VSALTPRAEIEGEIGMQQIGLQARLM--------------------S  256 (440)
Q Consensus       212 ~--------i~~l~~~~~~~lvVIDs-------l~~l~~~~el~~~~g~~q~~~~ar~l--------------------~  256 (440)
                      .        ........++.- .++.       ..... ...+++  |++++...++++                    .
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~  176 (218)
T cd03290         101 FGSPFNKQRYKAVTDACSLQP-DIDLLPFGDQTEIGER-GINLSG--GQRQRICVARALYQNTNIVFLDDPFSALDIHLS  176 (218)
T ss_pred             hcCcCCHHHHHHHHHHhCcHH-HHHhCcCccccCcccC-CCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHH
Confidence            1        011111101000 0000       00001 133443  777777777776                    2


Q ss_pred             HHHHH--HHHHHHhcCCEEEEEecccccc
Q 013567          257 QALRK--MSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       257 ~~l~~--L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ..+.+  +...+++.+.|||+++|..+.+
T Consensus       177 ~~l~~~~ll~~~~~~~~tii~~sH~~~~~  205 (218)
T cd03290         177 DHLMQEGILKFLQDDKRTLVLVTHKLQYL  205 (218)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCChHHH
Confidence            23333  4555666789999999997654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.87  E-value=2.1e-08  Score=90.02  Aligned_cols=119  Identities=24%  Similarity=0.309  Sum_probs=78.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCH-H-HHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNG-E-MALEIA  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~-e-e~l~~i  213 (440)
                      -+++|+++.|.|+||+||||| ++++.+...+..+.++++++.....   .+.+.+++.++       .+. + +.+.++
T Consensus        21 ~i~~g~~~~i~G~nGsGKStl-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~   92 (157)
T cd00267          21 TLKAGEIVALVGPNGSGKSTL-LRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALA   92 (157)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHH
Confidence            367999999999999999999 9999999988999999998754331   12333444443       332 2 233445


Q ss_pred             HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          214 DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       214 ~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      ..+..  .++++++|....-....            . ...+.+.   +..+.. .+.|+|+++|..+.+.
T Consensus        93 ~~l~~--~~~i~ilDEp~~~lD~~------------~-~~~l~~~---l~~~~~-~~~tii~~sh~~~~~~  144 (157)
T cd00267          93 RALLL--NPDLLLLDEPTSGLDPA------------S-RERLLEL---LRELAE-EGRTVIIVTHDPELAE  144 (157)
T ss_pred             HHHhc--CCCEEEEeCCCcCCCHH------------H-HHHHHHH---HHHHHH-CCCEEEEEeCCHHHHH
Confidence            55543  57899999887655311            0 1112222   333333 3789999999987554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.87  E-value=1.5e-08  Score=97.95  Aligned_cols=68  Identities=13%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+.+|++++|+|+||+||||| ++++++...   +..|.++++++.....   .+.+.+++.+++..++. .++.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~e   97 (246)
T PRK14269         24 QIEQNKITALIGASGCGKSTF-LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYE   97 (246)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHH
Confidence            367999999999999999999 999999874   5788899988754322   23456777777655443 34433

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.86  E-value=1.5e-08  Score=99.25  Aligned_cols=63  Identities=17%  Similarity=0.366  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~  202 (440)
                      -+++|++++|.|+||+||||| ++++++...     +..|.++++++....    . .+.+.+++.+++..++.
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  115 (268)
T PRK14248         43 DIEKHAVTALIGPSGCGKSTF-LRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP  115 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence            467999999999999999999 999999764     467889998765422    1 23456777777654443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.86  E-value=1.8e-08  Score=95.78  Aligned_cols=136  Identities=23%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC---CC---Ch-h----hhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH---AF---DP-S----YSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~---~~---~~-~----~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      =|++|++++|.|+||+||||| ++++.+...+..|.+++++..   ..   .. .    +.+.+++.+++..+....++.
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  108 (224)
T TIGR02324        30 TVNAGECVALSGPSGAGKSTL-LKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSAL  108 (224)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHH
Confidence            467999999999999999999 999999999888999997421   11   11 1    123577777766555444444


Q ss_pred             HHHHH---------------HHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH----------------
Q 013567          208 MALEI---------------ADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM----------------  255 (440)
Q Consensus       208 e~l~~---------------i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l----------------  255 (440)
                      +.+..               +..+++.     +-++. +.... ..++++  |++|+...++++                
T Consensus       109 e~l~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~L  180 (224)
T TIGR02324       109 EVVAEPLLERGVPREAARARARELLAR-----LNIPERLWHLP-PATFSG--GEQQRVNIARGFIADYPILLLDEPTASL  180 (224)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHH-----cCCchhhhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            33221               1111111     11111 11111 233443  677777777765                


Q ss_pred             ----HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          256 ----SQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                          ...+..+....++.++|||+++|..+.+
T Consensus       181 D~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~  212 (224)
T TIGR02324       181 DAANRQVVVELIAEAKARGAALIGIFHDEEVR  212 (224)
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence                2233333333345589999999997644

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.86  E-value=1.4e-08  Score=99.78  Aligned_cols=58  Identities=22%  Similarity=0.332  Sum_probs=43.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--------CcEEEEcCCCCCC--h-hhhhhhcccccc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--------GNAMLVDAEHAFD--P-SYSKALGVDVEN  197 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--------~~vv~id~E~~~~--~-~~a~~lGv~~~~  197 (440)
                      -|.+|++++|.||||+||||| ++++++...+.        .|.++++++....  . .+.+.+++.+++
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTL-l~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~   91 (272)
T PRK13547         23 RIEPGRVTALLGRNGAGKSTL-LKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA   91 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence            477999999999999999999 99999998876        7889998865322  1 233345555443

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.86  E-value=2.2e-08  Score=96.86  Aligned_cols=68  Identities=16%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hc--CCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ---KL--GGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~---~~--~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =+++|++++|.|+|||||||| +++++++.   .+  ..|.+++++.....     ..+.+.+++.+++..++. .++.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~  102 (250)
T PRK14245         25 EIEEKSVVAFIGPSGCGKSTF-LRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFE  102 (250)
T ss_pred             EEeCCCEEEEECCCCCCHHHH-HHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHH
Confidence            377999999999999999999 99998863   33  37889998875432     123456787777655443 34433

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.86  E-value=1.4e-08  Score=108.11  Aligned_cols=149  Identities=15%  Similarity=0.172  Sum_probs=90.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| ++++.+..++..|.++++++....  .  .+.+.+|+.+++.   .+....++.+.+.
T Consensus       274 ~i~~Ge~~~liG~NGsGKSTL-l~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~  352 (501)
T PRK10762        274 TLRKGEILGVSGLMGAGRTEL-MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS  352 (501)
T ss_pred             EEcCCcEEEEecCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence            478999999999999999999 999999999999999998864321  1  1234577777663   2333334433222


Q ss_pred             H---------------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          212 I---------------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       212 ~---------------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                      .                     +++++.     .+-++ ....-. ..++++  |++|+...++++              
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gekqrv~lA~al~~~p~lllLDEPt~  424 (501)
T PRK10762        353 LTALRYFSRAGGSLKHADEQQAVSDFIR-----LFNIKTPSMEQA-IGLLSG--GNQQKVAIARGLMTRPKVLILDEPTR  424 (501)
T ss_pred             hhhhhhhcccccccCHHHHHHHHHHHHH-----hcCCCCCCccCc-hhhCCH--HHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence            1                     112211     12221 111111 245555  788888888876              


Q ss_pred             ------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccc
Q 013567          256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGG  296 (440)
Q Consensus       256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG  296 (440)
                            .+.+..+.....+.|.|||+++|..+.+...++.......|
T Consensus       425 ~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  471 (501)
T PRK10762        425 GVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG  471 (501)
T ss_pred             CCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence                  23333333333445899999999987665444333333333

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.86  E-value=1.3e-08  Score=98.98  Aligned_cols=40  Identities=23%  Similarity=0.487  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -|++|++++|.||||+||||| ++++++...+..|.++++.
T Consensus        26 ~i~~Ge~~~I~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~~   65 (251)
T PRK09544         26 ELKPGKILTLLGPNGAGKSTL-VRVVLGLVAPDEGVIKRNG   65 (251)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECC
Confidence            478999999999999999999 9999999988888887764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.85  E-value=1.7e-08  Score=97.92  Aligned_cols=68  Identities=15%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =|++|++++|.|+||+||||| ++++++...+     ..|.++++++....    . .+.+.+++.+++..++. .++.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  106 (254)
T PRK14273         29 KILKNSITALIGPSGCGKSTF-LRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYD  106 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHH
Confidence            478999999999999999999 9999999875     37889998865321    1 23455777776654442 44443

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.85  E-value=1.4e-08  Score=108.20  Aligned_cols=153  Identities=14%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChh----hhhhhcccccceeecCCCCHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPS----YSKALGVDVENLIVCQPDNGEMALE-  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~----~a~~lGv~~~~l~i~~~~~~ee~l~-  211 (440)
                      -+++|++++|.|||||||||| ++++++...+  ..|.++++++......    +.+.+|+.+++..++...++.+.+. 
T Consensus        23 ~i~~Ge~~~liG~nGsGKSTL-l~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~  101 (500)
T TIGR02633        23 EVRPGECVGLCGENGAGKSTL-MKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL  101 (500)
T ss_pred             EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence            578999999999999999999 9999999875  5888999876543211    2345777776654444334433222 


Q ss_pred             ------------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          212 ------------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       212 ------------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                                        .+..++...+     ++....-.+..++++  |++|+...++++                  
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~~LSg--G~~qrv~iA~al~~~p~lllLDEPt~~LD~  174 (500)
T TIGR02633       102 GNEITLPGGRMAYNAMYLRAKNLLRELQ-----LDADNVTRPVGDYGG--GQQQLVEIAKALNKQARLLILDEPSSSLTE  174 (500)
T ss_pred             hccccccccccCHHHHHHHHHHHHHHcC-----CCCCcccCchhhCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence                              1222222111     211110011245555  788888888876                  


Q ss_pred             --HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                        ...+..+...+++.+.|||+++|..+.+...++.......|+..
T Consensus       175 ~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~  220 (500)
T TIGR02633       175 KETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV  220 (500)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence              23333333333456999999999988766555555555555544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=1.8e-08  Score=107.55  Aligned_cols=141  Identities=16%  Similarity=0.191  Sum_probs=86.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l  210 (440)
                      -+++|++++|.|+|||||||| ++++.++.+ +..|.++++++....  .  .+.+.+++.+++.   .+....++.+.+
T Consensus       284 ~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l  362 (506)
T PRK13549        284 SLRRGEILGIAGLVGAGRTEL-VQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI  362 (506)
T ss_pred             EEcCCcEEEEeCCCCCCHHHH-HHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence            478999999999999999999 999999988 478999998764321  1  1234467766653   123333333322


Q ss_pred             H--------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          211 E--------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       211 ~--------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                      .                    .+..++.     .+-++ ...... ..++++  |++|+...++++              
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--G~kqrv~lA~al~~~p~lllLDEPt~  434 (506)
T PRK13549        363 TLAALDRFTGGSRIDDAAELKTILESIQ-----RLKVKTASPELA-IARLSG--GNQQKAVLAKCLLLNPKILILDEPTR  434 (506)
T ss_pred             hhhhhhhhccCcccChHHHHHHHHHHHH-----hcCccCCCcccc-cccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence            1                    1112211     12222 111111 245555  888888888876              


Q ss_pred             ------HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                            .+.+..+...+++.+.|||+++|..+.+...++
T Consensus       435 ~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d  473 (506)
T PRK13549        435 GIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSD  473 (506)
T ss_pred             CcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC
Confidence                  233344444344569999999999876654444

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.85  E-value=2.7e-08  Score=96.39  Aligned_cols=42  Identities=26%  Similarity=0.521  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      -+++|++++|.|+|||||||| ++++++... ..|.++++++..
T Consensus        18 ~i~~Gei~~l~G~nGsGKSTL-l~~l~Gl~~-~~G~i~~~g~~i   59 (248)
T PRK03695         18 EVRAGEILHLVGPNGAGKSTL-LARMAGLLP-GSGSIQFAGQPL   59 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHcCCCC-CCeEEEECCEec
Confidence            378999999999999999999 999999875 478899988753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.85  E-value=2.6e-08  Score=89.81  Aligned_cols=136  Identities=15%  Similarity=0.293  Sum_probs=87.1

Q ss_pred             cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h-hhhhhcccc--------
Q 013567          127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S-YSKALGVDV--------  195 (440)
Q Consensus       127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~-~a~~lGv~~--------  195 (440)
                      ++-+-||.+- =-+.+|+.+.|.||+||||||| +++++.+..++.|.++|.+|.....  . +..++.+..        
T Consensus        14 ~~a~il~~is-l~v~~Ge~iaitGPSG~GKStl-lk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~   91 (223)
T COG4619          14 GDAKILNNIS-LSVRAGEFIAITGPSGCGKSTL-LKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD   91 (223)
T ss_pred             CCCeeeccee-eeecCCceEEEeCCCCccHHHH-HHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence            4444455432 3578999999999999999999 9999999999999999999975433  2 333333322        


Q ss_pred             ---cceeec------CCC-------------------------C--HHHHHHHHHHHHhcCCcceEEEecccccCCchhh
Q 013567          196 ---ENLIVC------QPD-------------------------N--GEMALEIADRMCRSGAIDLICVDSVSALTPRAEI  239 (440)
Q Consensus       196 ---~~l~i~------~~~-------------------------~--~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el  239 (440)
                         +|+.+-      +++                         +  ..+....++.+  ...++++.+|.++.....   
T Consensus        92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L--q~~P~ILLLDE~TsALD~---  166 (223)
T COG4619          92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL--QFMPKILLLDEITSALDE---  166 (223)
T ss_pred             chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh--hcCCceEEecCchhhcCh---
Confidence               232210      000                         0  01223344443  346788888988766531   


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567          240 EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       240 ~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~  282 (440)
                                .-.+.+..++   .++.++.+++|+.|+|..+.
T Consensus       167 ----------~nkr~ie~mi---~~~v~~q~vAv~WiTHd~dq  196 (223)
T COG4619         167 ----------SNKRNIEEMI---HRYVREQNVAVLWITHDKDQ  196 (223)
T ss_pred             ----------hhHHHHHHHH---HHHhhhhceEEEEEecChHH
Confidence                      1123344444   44556889999999998764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.85  E-value=7.1e-09  Score=124.15  Aligned_cols=157  Identities=12%  Similarity=0.112  Sum_probs=98.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADR  215 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~  215 (440)
                      =++++|++++|.|+||+||||| ++++.+...+..|.+++++......  ...+.+|+.++...+.+..++.+.+.....
T Consensus      1960 f~I~~GEi~gLLG~NGAGKTTL-lkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~ 2038 (2272)
T TIGR01257      1960 VGVRPGECFGLLGVNGAGKTTT-FKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR 2038 (2272)
T ss_pred             EEEcCCcEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH
Confidence            4789999999999999999999 9999999999999999998765322  234568888877666666666665443211


Q ss_pred             HHh-------c---CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHH
Q 013567          216 MCR-------S---GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGN  265 (440)
Q Consensus       216 l~~-------~---~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~l  265 (440)
                      +..       .   .-.+.+-++...... ..++++  |++++...++++                    ++.+..+...
T Consensus      2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-~~~LSG--GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257      2039 LRGVPAEEIEKVANWSIQSLGLSLYADRL-AGTYSG--GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            100       0   000111111111111 133443  666666666655                    3344444443


Q ss_pred             HHhcCCEEEEEeccccccccccCCceeecccce
Q 013567          266 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       266 ak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      .++.|.|||+++|..+.+...|+.......|+.
T Consensus      2116 l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257      2116 IIREGRAVVLTSHSMEECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred             HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            444589999999999877665655545545544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.84  E-value=2.4e-08  Score=96.69  Aligned_cols=43  Identities=37%  Similarity=0.522  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCcEEEEcCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEV--QKLGGNAMLVDAEHA  182 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~--~~~~~~vv~id~E~~  182 (440)
                      -+++|++++|+|+||+||||| ++++++.  ..+..|.+++++...
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~G~i~~~g~~~   73 (252)
T CHL00131         29 SINKGEIHAIMGPNGSGKSTL-SKVIAGHPAYKILEGDILFKGESI   73 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHcCCCcCcCCCceEEECCEEc
Confidence            478999999999999999999 8999997  357788899987643

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.84  E-value=2e-08  Score=97.94  Aligned_cols=68  Identities=12%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCC----C-hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAF----D-PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~----~-~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =+++|++++|.|+||+||||| ++++.+...+.     .|.++++++...    . ..+.+.+++.+++..++. .++.+
T Consensus        29 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~e  106 (261)
T PRK14258         29 EIYQSKVTAIIGPSGCGKSTF-LKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYD  106 (261)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHH
Confidence            478999999999999999999 99999998764     577888876532    1 123445676666544443 44433

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.84  E-value=2.4e-08  Score=96.67  Aligned_cols=69  Identities=12%  Similarity=0.231  Sum_probs=49.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC---h--hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD---P--SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~---~--~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -|++|++++|.|+||+||||| ++++++...     +..|.++++++....   .  .+.+.+++.+++..++. .++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e  103 (251)
T PRK14251         26 DFEEKELTALIGPSGCGKSTF-LRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYD  103 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHH
Confidence            478999999999999999999 999999986     357889998875322   1  23445777766654443 34444


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       104 n  104 (251)
T PRK14251        104 N  104 (251)
T ss_pred             H
Confidence            3

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.84  E-value=2e-08  Score=97.11  Aligned_cols=64  Identities=27%  Similarity=0.447  Sum_probs=48.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCCh-----hhhhhhcccccceeecC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~  202 (440)
                      =-+++|++++|.|+||+||||| +++++++..+     ..|.++++++.....     .+.+.+++.+++..++.
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14262         24 MKIFKNQITAIIGPSGCGKTTL-LRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP   97 (250)
T ss_pred             EeecCCCEEEEECCCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence            3578999999999999999999 9999998763     678899988654321     23456777776654443

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.84  E-value=2.3e-08  Score=96.65  Aligned_cols=67  Identities=18%  Similarity=0.314  Sum_probs=49.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC---h-hhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD---P-SYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~---~-~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -|.+|++++|.||||+||||| ++++.+...+     ..|.++++++....   . .+.+.+++.+++..++. .++.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~  100 (249)
T PRK14253         25 PIPARQVTALIGPSGCGKSTL-LRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIY  100 (249)
T ss_pred             EecCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHH
Confidence            477999999999999999999 9999998875     47889998865421   1 23456777776655443 3443

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.84  E-value=2e-08  Score=98.61  Aligned_cols=68  Identities=21%  Similarity=0.371  Sum_probs=49.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+||+||||| ++++++...+     ..|.+++++.....    . .+.+.+++.+++..++.. ++.+
T Consensus        47 ~i~~Ge~~~I~G~nGsGKSTL-l~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e  124 (272)
T PRK14236         47 RIPKNRVTAFIGPSGCGKSTL-LRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYE  124 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHH
Confidence            478999999999999999999 9999998763     67889998865432    1 234567777766544433 4443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.84  E-value=1.9e-08  Score=107.46  Aligned_cols=142  Identities=13%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h--hhhhhcccccce---eecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S--YSKALGVDVENL---IVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~--~a~~lGv~~~~l---~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| ++++.+..++..|.+++++......  .  +.+.+++.+++.   .++...++.+.+.
T Consensus       285 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~  363 (510)
T PRK15439        285 EVRAGEILGLAGVVGAGRTEL-AETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC  363 (510)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence            478999999999999999999 9999999988899999987643221  1  123466666542   1222223322211


Q ss_pred             ------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          212 ------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       212 ------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                                        .+..++.     .+-++ ...... ..++++  |++|+...++++                 
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--G~kqrl~la~al~~~p~lLlLDEPt~gLD  435 (510)
T PRK15439        364 ALTHNRRGFWIKPARENAVLERYRR-----ALNIKFNHAEQA-ARTLSG--GNQQKVLIAKCLEASPQLLIVDEPTRGVD  435 (510)
T ss_pred             hhhhhhhccccChHHHHHHHHHHHH-----HcCCCCCCccCc-cccCCc--HHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence                              1112221     11121 111111 244555  788888888876                 


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN  289 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~  289 (440)
                         .+.+..+...+++.+.|||+++|..+.+..+++.
T Consensus       436 ~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~  472 (510)
T PRK15439        436 VSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADR  472 (510)
T ss_pred             hhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence               2334444333344689999999998876654443

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.83  E-value=1.2e-08  Score=96.83  Aligned_cols=61  Identities=21%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i  200 (440)
                      -+++|++++|.||||+||||| ++++++...+..|.++++++....   ..+.+.+++.+++..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l   89 (221)
T cd03244          26 SIKPGEKVGIVGRTGSGKSSL-LLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVL   89 (221)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcc
Confidence            478999999999999999999 999999999999999998865322   1244567776665443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.83  E-value=1e-08  Score=110.00  Aligned_cols=144  Identities=17%  Similarity=0.174  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---hhhhhcccccce--eecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---YSKALGVDVENL--IVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~a~~lGv~~~~l--~i~~~~~~ee~l  210 (440)
                      -+++|++++|.|||||||||| ++++.++.. ..|.++++++.....   .   +.+.+|+.+++.  .+....++.+.+
T Consensus       308 ~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l  385 (529)
T PRK15134        308 TLRPGETLGLVGESGSGKSTT-GLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII  385 (529)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence            478999999999999999999 999999884 788999988653221   1   234578777764  234444554433


Q ss_pred             HHHHHHH---------hc---CCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          211 EIADRMC---------RS---GAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       211 ~~i~~l~---------~~---~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                      .......         ..   .-++.+-++ ...... ..++++  |++|+...++++                     .
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~  462 (529)
T PRK15134        386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-PAEFSG--GQRQRIAIARALILKPSLIILDEPTSSLDKTVQA  462 (529)
T ss_pred             HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-CccCCH--HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHH
Confidence            2210000         00   001112222 111111 245555  888888888877                     2


Q ss_pred             HHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYY  287 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~  287 (440)
                      .++..|..++++.+.|||+++|..+.+...+
T Consensus       463 ~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~  493 (529)
T PRK15134        463 QILALLKSLQQKHQLAYLFISHDLHVVRALC  493 (529)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeCCHHHHHHhc
Confidence            3444445555556999999999987654433

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.83  E-value=2.3e-08  Score=98.99  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=49.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -|.+|++++|.|+||+||||| ++++.++..     +..|.++++++....    . .+.+.+++.+++..++.. ++.+
T Consensus        61 ~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e  138 (286)
T PRK14275         61 DILSKYVTAIIGPSGCGKSTF-LRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFD  138 (286)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHH
Confidence            578999999999999999999 999999754     378889998865321    1 234567777776554432 4433

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.83  E-value=2.5e-08  Score=96.24  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=38.6

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHA  182 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~  182 (440)
                      --+++|++++|.|+||+||||| ++++.+..  .+..|.++++++..
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~   67 (248)
T PRK09580         22 LEVRPGEVHAIMGPNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDL   67 (248)
T ss_pred             eEEcCCCEEEEECCCCCCHHHH-HHHHcCCccCCCCceEEEECCCcc
Confidence            3578999999999999999999 99999984  57889999998754

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.83  E-value=1.4e-08  Score=96.94  Aligned_cols=42  Identities=24%  Similarity=0.461  Sum_probs=38.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      -+++|++++|.|+||+||||| ++++++...+..|.++++++.
T Consensus        44 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~   85 (224)
T cd03220          44 EVPRGERIGLIGRNGAGKSTL-LRLLAGIYPPDSGTVTVRGRV   85 (224)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEE
Confidence            467999999999999999999 999999999999999998764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.83  E-value=2.7e-08  Score=96.38  Aligned_cols=63  Identities=14%  Similarity=0.258  Sum_probs=46.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC-----hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~  202 (440)
                      -|.+|++++|.|+||+||||| ++++++...     +..|.++++++....     ..+.+.+++.+++..++.
T Consensus        27 ~i~~Ge~~~I~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~   99 (251)
T PRK14244         27 DIYKREVTAFIGPSGCGKSTF-LRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP   99 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence            477999999999999999999 999999875     357888998764321     123456777777654443

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=2.5e-08  Score=98.22  Aligned_cols=63  Identities=21%  Similarity=0.437  Sum_probs=47.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~~~a~~lGv~~~~l~i~~  202 (440)
                      -|++|++++|.|+||+||||| ++++.+...+     ..|.++++++....    ..+.+.+++.+++..++.
T Consensus        43 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~  114 (276)
T PRK14271         43 GFPARAVTSLMGPTGSGKTTF-LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP  114 (276)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence            468999999999999999999 9999998874     57889998865432    123456777776654443

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.82  E-value=2.7e-08  Score=93.48  Aligned_cols=62  Identities=16%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|.|+||+||||| ++++.+...+..|.+++++.....  . .+.+.+++.+++..+.
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~   94 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTL-ILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLF   94 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCccc
Confidence            468999999999999999999 999999999999999998864321  1 2344567766654433

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]

Probab=98.82  E-value=1.3e-08  Score=100.45  Aligned_cols=192  Identities=18%  Similarity=0.142  Sum_probs=121.1

Q ss_pred             CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccc--------
Q 013567          128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDV--------  195 (440)
Q Consensus       128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~--------  195 (440)
                      -+|.|+++| +|..+|+++.+.||.|+|||||.......+..+|-..+|-+.|......    +.+-.|+..        
T Consensus       259 RFpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~  337 (514)
T KOG2373|consen  259 RFPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYK  337 (514)
T ss_pred             hhhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhh
Confidence            367999999 9999999999999999999999878888888888899999988764432    122223322        


Q ss_pred             ------ccee--e---cCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567          196 ------ENLI--V---CQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG  264 (440)
Q Consensus       196 ------~~l~--i---~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~  264 (440)
                            +++-  +   ......+..++.+...+--.++.-||||.++-|.....+..   ++ ...|    ..++--+..
T Consensus       338 HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~---Dr-f~~Q----D~iig~fR~  409 (514)
T KOG2373|consen  338 HWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMAL---DR-FHLQ----DRIIGYFRQ  409 (514)
T ss_pred             HHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhcc---ch-hhhH----HHHHHHHHH
Confidence                  1111  1   11122334444444433335678899999998875433332   11 1112    234445566


Q ss_pred             HHHhcCCEEEEEeccccccccccCCceee---cccce-eeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC
Q 013567          265 NASKAGCTLIFLNQIRYKIGVYYGNPEVT---SGGIA-LKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR  339 (440)
Q Consensus       265 lak~~~~tVI~inhl~~~ig~~~~~~~~~---~gG~~-l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~  339 (440)
                      +|.+++|-|-++-|.++.-+.    .+..   .+|.+ ...-++..+.+....      -+...| +.++.|.|||+.-
T Consensus       410 fAT~nn~HvTlVvHPRKed~d----~El~t~s~fGsAkatQEADNVliiQdkr------l~~~rg-kkyLqi~KNRy~G  477 (514)
T KOG2373|consen  410 FATQNNIHVTLVVHPRKEDGD----TELDTQSFFGSAKATQEADNVLIIQDKR------LDRDRG-KKYLQILKNRYYG  477 (514)
T ss_pred             HhhccceeEEEEecccccCCC----ceeeehhhccccccccccccEEEEeecc------cccccc-hhhhhhhhhcccC
Confidence            788999999999999875432    2221   23433 345566777765431      111223 4588999999754

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.82  E-value=3e-08  Score=97.13  Aligned_cols=68  Identities=18%  Similarity=0.219  Sum_probs=49.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+||+||||| ++++.+...     +..|.+++++.....    . .+.+.+++.+++..++. .++.+
T Consensus        42 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  119 (267)
T PRK14237         42 QFEKNKITALIGPSGSGKSTY-LRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYE  119 (267)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHH
Confidence            478999999999999999999 999999875     468889998875422    1 23456787777654443 34433

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.82  E-value=1.8e-08  Score=107.29  Aligned_cols=140  Identities=15%  Similarity=0.176  Sum_probs=85.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMALE  211 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l~  211 (440)
                      +.+|++++|.|||||||||| ++++++...+ ..|.++++++....  .  .+.+.+|+.+++.   .+++..++.+.+.
T Consensus       283 i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~  361 (500)
T TIGR02633       283 LRRGEILGVAGLVGAGRTEL-VQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT  361 (500)
T ss_pred             EeCCcEEEEeCCCCCCHHHH-HHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence            78999999999999999999 9999999885 68889998765421  1  2344577766653   1222223322211


Q ss_pred             --------------------HHHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH---------------
Q 013567          212 --------------------IADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM---------------  255 (440)
Q Consensus       212 --------------------~i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l---------------  255 (440)
                                          .+..++...     -+.. ..... ...+++  |++|+...++++               
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~l~~~~~~~~-~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~  433 (500)
T TIGR02633       362 LSVLKSFCFKMRIDAAAELQIIGSAIQRL-----KVKTASPFLP-IGRLSG--GNQQKAVLAKMLLTNPRVLILDEPTRG  433 (500)
T ss_pred             chhhhhhccCCcCCHHHHHHHHHHHHHhc-----CccCCCccCc-cccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence                                122222211     1211 11111 245554  788888888876               


Q ss_pred             -----HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          256 -----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       256 -----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                           .+.+..+...+++.+.|||+++|..+.+...++
T Consensus       434 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d  471 (500)
T TIGR02633       434 VDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD  471 (500)
T ss_pred             cCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence                 234444444444569999999999876654333

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=2.4e-08  Score=98.25  Aligned_cols=62  Identities=21%  Similarity=0.437  Sum_probs=46.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~  201 (440)
                      =+++|++++|.|+||+||||| ++++.++..+     ..|.++++++....    . .+.+.+++.+++..++
T Consensus        42 ~i~~Ge~~~IiG~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~  113 (274)
T PRK14265         42 KIPAKKIIAFIGPSGCGKSTL-LRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF  113 (274)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence            367999999999999999999 9999998752     46888898875432    1 2345677777765444

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=2.4e-08  Score=98.90  Aligned_cols=69  Identities=16%  Similarity=0.360  Sum_probs=50.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =|++|++++|.|+||+||||| +++++++..     +..|.++++++....    . .+.+.+++.+++..++.. ++.+
T Consensus        61 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e  138 (285)
T PRK14254         61 DIPENQVTAMIGPSGCGKSTF-LRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYD  138 (285)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHH
Confidence            478999999999999999999 999999976     478899998875421    1 234567777776554433 5444


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       139 n  139 (285)
T PRK14254        139 N  139 (285)
T ss_pred             H
Confidence            3

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.82  E-value=4.9e-09  Score=99.94  Aligned_cols=60  Identities=27%  Similarity=0.442  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccccee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLI  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~  199 (440)
                      =+++|+++.|.||||+||||| ++++++...+..|.+++++.....  . .+.+.+++.+++..
T Consensus        25 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~   87 (229)
T cd03254          25 SIKPGETVAIVGPTGAGKTTL-INLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF   87 (229)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch
Confidence            578999999999999999999 999999999999999998864322  1 23445677665543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=2.9e-08  Score=96.03  Aligned_cols=69  Identities=22%  Similarity=0.403  Sum_probs=50.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+.+|++++|.|+||+||||| ++++++...+.     .|.++++++....    . .+.+.+++.+++..++...++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e  104 (252)
T PRK14272         26 DVQRGTVNALIGPSGCGKTTF-LRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD  104 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence            478999999999999999999 99999987653     6889998865432    1 23445777777655554444443

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.82  E-value=3e-08  Score=106.09  Aligned_cols=152  Identities=12%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcC-----------------------CCC-------C--C
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDA-----------------------EHA-------F--D  184 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~-----------------------E~~-------~--~  184 (440)
                      -+.+|++++|.|||||||||| ++++++..  .+..|.+++++                       ...       .  .
T Consensus        22 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  100 (520)
T TIGR03269        22 TIEEGEVLGILGRSGAGKSVL-MHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS  100 (520)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccC
Confidence            577999999999999999999 99999996  67888888862                       100       0  0


Q ss_pred             h----hhhhhhcccccc-eeecCCCCHHHHHHH---------------HHHHHhcCCcceEEEecccccCCchhhcccch
Q 013567          185 P----SYSKALGVDVEN-LIVCQPDNGEMALEI---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIG  244 (440)
Q Consensus       185 ~----~~a~~lGv~~~~-l~i~~~~~~ee~l~~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g  244 (440)
                      .    .+.+.+|+.+++ ..++...++.+.+..               +..++.     .+-++...... ..++++  |
T Consensus       101 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LSg--G  172 (520)
T TIGR03269       101 DKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE-----MVQLSHRITHI-ARDLSG--G  172 (520)
T ss_pred             HHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----HcCChhhhhcC-cccCCH--H
Confidence            0    123446777665 333333343332221               111221     12223222222 245555  7


Q ss_pred             hhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          245 MQQIGLQARLM---------------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       245 ~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      ++|+...++++                     ..++..|..++++.+.|||+++|..+.+...++.......|+..
T Consensus       173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~  248 (520)
T TIGR03269       173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK  248 (520)
T ss_pred             HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe
Confidence            88888888876                     23444455566667999999999988765555554444455443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.81  E-value=1.8e-08  Score=108.74  Aligned_cols=139  Identities=16%  Similarity=0.165  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH-----HH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM-----AL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee-----~l  210 (440)
                      =+++|++++|+||+|+||||| ++++.+...+..|.+++++.+..+.   .+.+.+++.+++..+++....++     ..
T Consensus       364 ~i~~G~~~aivG~sGsGKSTl-~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~  442 (555)
T TIGR01194       364 RIAQGDIVFIVGENGCGKSTL-AKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASL  442 (555)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhH
Confidence            478999999999999999999 9999999999999999998765432   35566787777655443211111     11


Q ss_pred             HHHHHHHhcCCcceEEEeccc-ccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHh
Q 013567          211 EIADRMCRSGAIDLICVDSVS-ALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASK  268 (440)
Q Consensus       211 ~~i~~l~~~~~~~lvVIDsl~-~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~  268 (440)
                      +.+.+.++..+.+-. ++.+. .+-....+++  |++|+...+|++                     ..+...+...++.
T Consensus       443 ~~~~~~~~~~~l~~~-~~~lp~g~~t~~~LSg--Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~  519 (555)
T TIGR01194       443 DNAQQYLQRLEIADK-VKIEDGGFSTTTALST--GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR  519 (555)
T ss_pred             HHHHHHHHHcCCchh-hcccccccCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            112222222221111 11100 0000123444  778888888876                     1222333333445


Q ss_pred             cCCEEEEEecccc
Q 013567          269 AGCTLIFLNQIRY  281 (440)
Q Consensus       269 ~~~tVI~inhl~~  281 (440)
                      .+.|+|+++|..+
T Consensus       520 ~~~tiiiisH~~~  532 (555)
T TIGR01194       520 QGKTIIIISHDDQ  532 (555)
T ss_pred             CCCEEEEEeccHH
Confidence            6899999999754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.81  E-value=3.8e-08  Score=95.87  Aligned_cols=69  Identities=13%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|+||+||||| ++++.+...+     ..|.++++++....     ..+...+++.+++..++. .++.+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e  106 (259)
T PRK14260         29 DIYRNKVTAIIGPSGCGKSTF-IKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYE  106 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHH
Confidence            467999999999999999999 9999998764     36888888765422     123456787777765544 45444


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       107 n  107 (259)
T PRK14260        107 N  107 (259)
T ss_pred             H
Confidence            3

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.81  E-value=2.6e-08  Score=97.70  Aligned_cols=63  Identities=21%  Similarity=0.501  Sum_probs=47.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCC----Ch-hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAF----DP-SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~----~~-~~a~~lGv~~~~l~i~~  202 (440)
                      -|++|++++|.|||||||||| +++++++..     +..|.++++++...    +. .+.+.+++.+++..++.
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  107 (269)
T PRK14259         35 DIPRGKVTALIGPSGCGKSTV-LRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP  107 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence            578999999999999999999 999999876     46788889876532    11 23455777776654443

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.80  E-value=3e-08  Score=108.25  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=102.9

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      -|+.+ .+=+++|++++|.||+|+||||| ++++.+...++   .|.+++++.......+.+.+|+.+++-.+....++.
T Consensus        40 iL~~v-s~~i~~Ge~~aI~G~sGsGKSTL-L~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~  117 (617)
T TIGR00955        40 LLKNV-SGVAKPGELLAVMGSSGAGKTTL-MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR  117 (617)
T ss_pred             cccCC-EEEEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence            35553 37899999999999999999999 99999887654   678999987654344566778887776655555665


Q ss_pred             HHHHH------------------HHHHHhcCCcceEEEeccc-ccCC----chhhcccchhhhHHHHHHHH---------
Q 013567          208 MALEI------------------ADRMCRSGAIDLICVDSVS-ALTP----RAEIEGEIGMQQIGLQARLM---------  255 (440)
Q Consensus       208 e~l~~------------------i~~l~~~~~~~lvVIDsl~-~l~~----~~el~~~~g~~q~~~~ar~l---------  255 (440)
                      |.+..                  ++.+++.-+     ++... ....    ...+++  |++++...++++         
T Consensus       118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-----L~~~~~t~vg~~~~~~~LSg--GqrkRvsia~aL~~~p~vlll  190 (617)
T TIGR00955       118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-----LRKCANTRIGVPGRVKGLSG--GERKRLAFASELLTDPPLLFC  190 (617)
T ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-----chhcCcCccCCCCCCCCcCc--chhhHHHHHHHHHcCCCEEEe
Confidence            54432                  222222111     11111 1111    023444  778888888876         


Q ss_pred             ------------HHHHHHHHHHHHhcCCEEEEEecccc-ccccccCCceeecccceeeee
Q 013567          256 ------------SQALRKMSGNASKAGCTLIFLNQIRY-KIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       256 ------------~~~l~~L~~lak~~~~tVI~inhl~~-~ig~~~~~~~~~~gG~~l~~~  302 (440)
                                  ...+..|+.+++ .|.|||+++|... .+-.++++.....+|+...+.
T Consensus       191 DEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G  249 (617)
T TIGR00955       191 DEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG  249 (617)
T ss_pred             eCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence                        244555555554 5899999999864 455556666566666555443

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.80  E-value=1.2e-08  Score=111.49  Aligned_cols=152  Identities=16%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC------------CCh-h----hhhhhcccccce--e
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA------------FDP-S----YSKALGVDVENL--I  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~------------~~~-~----~a~~lGv~~~~l--~  199 (440)
                      -+++|++++|+|+|||||||| ++++.++..+..|.+++++...            ... .    +.+.+|+.+++.  .
T Consensus        38 ~v~~Ge~~~lvG~nGsGKSTL-l~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~  116 (623)
T PRK10261         38 SLQRGETLAIVGESGSGKSVT-ALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTS  116 (623)
T ss_pred             EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhh
Confidence            467999999999999999999 9999999988888888866311            011 1    123577777764  2


Q ss_pred             ecCCCCHHHHHHH----------------HHHHHhcCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH-----
Q 013567          200 VCQPDNGEMALEI----------------ADRMCRSGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM-----  255 (440)
Q Consensus       200 i~~~~~~ee~l~~----------------i~~l~~~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l-----  255 (440)
                      +....++.+.+..                +.+++.     .+-+..   ..... ..++++  |++|+...++++     
T Consensus       117 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~~~-~~~LSg--Gq~QRv~iA~AL~~~P~  188 (623)
T PRK10261        117 LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD-----QVRIPEAQTILSRY-PHQLSG--GMRQRVMIAMALSCRPA  188 (623)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HCCCCChhhHHhCC-CccCCH--HHHHHHHHHHHHhCCCC
Confidence            3333444443321                111111     222211   11122 255665  888888888887     


Q ss_pred             ----------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          256 ----------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       256 ----------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                                      .+++..|..+.++.+.|||+++|....+..+++.......|+..
T Consensus       189 lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~  248 (623)
T PRK10261        189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV  248 (623)
T ss_pred             EEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence                            23444555555567999999999987766555555555555554

>PLN03211 ABC transporter G-25; Provisional

Probab=98.80  E-value=2.7e-08  Score=109.22  Aligned_cols=162  Identities=20%  Similarity=0.206  Sum_probs=96.5

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHH
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      |+.+ .+=+++|++++|.||||+||||| ++++++..+++  .|.++++++... ....+++|+.+++..+....++.|.
T Consensus        84 L~~v-s~~i~~Ge~~aI~GpnGaGKSTL-L~iLaG~~~~~~~sG~I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~  160 (659)
T PLN03211         84 LNGV-TGMASPGEILAVLGPSGSGKSTL-LNALAGRIQGNNFTGTILANNRKPT-KQILKRTGFVTQDDILYPHLTVRET  160 (659)
T ss_pred             eeCC-EEEEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCceeEEEEECCEECc-hhhccceEEECcccccCCcCCHHHH
Confidence            4443 36789999999999999999999 99999988764  788999987543 2334567887777666555566555


Q ss_pred             HHHHHHHHhcCC-------------cceEEEecccc-c---CCchhhcccchhhhHHHHHHHH-----------------
Q 013567          210 LEIADRMCRSGA-------------IDLICVDSVSA-L---TPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       210 l~~i~~l~~~~~-------------~~lvVIDsl~~-l---~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                      +.....+.....             ++.+-++.... .   .....+++  |++++...++++                 
T Consensus       161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSg--GerqRv~ia~aL~~~P~iLlLDEPtsgLD  238 (659)
T PLN03211        161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEPTSGLD  238 (659)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcCh--hhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence            543221100000             00111111100 0   00123444  777887777776                 


Q ss_pred             ----HHHHHHHHHHHHhcCCEEEEEecccc-ccccccCCceeeccccee
Q 013567          256 ----SQALRKMSGNASKAGCTLIFLNQIRY-KIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tVI~inhl~~-~ig~~~~~~~~~~gG~~l  299 (440)
                          ...++.|+.++ +.|.|||+++|..+ .+-..++.......|+.+
T Consensus       239 ~~~~~~l~~~L~~l~-~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv  286 (659)
T PLN03211        239 ATAAYRLVLTLGSLA-QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL  286 (659)
T ss_pred             HHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence                23344444444 36899999999876 344444444444455443

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.79  E-value=2.2e-08  Score=107.40  Aligned_cols=40  Identities=15%  Similarity=0.297  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -|.+|++++|.|||||||||| ++++++...+..|.+++++
T Consensus        23 ~i~~Ge~~~liG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~   62 (530)
T PRK15064         23 KFGGGNRYGLIGANGCGKSTF-MKILGGDLEPSAGNVSLDP   62 (530)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecC
Confidence            578999999999999999999 9999999988888888875

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.79  E-value=2.1e-08  Score=95.41  Aligned_cols=60  Identities=18%  Similarity=0.343  Sum_probs=47.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccccee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLI  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~  199 (440)
                      =|++|++++|.||||+||||| ++++.+...+..|.++++++....  . .+.+.+++.+++..
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~   98 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTV-VALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV   98 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccH
Confidence            478999999999999999999 999999999999999999875321  1 23345666665543

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.79  E-value=2.5e-08  Score=97.96  Aligned_cols=63  Identities=16%  Similarity=0.341  Sum_probs=47.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC-----hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~  202 (440)
                      =|++|++++|.|+|||||||| ++++.+...     +..|.+++++.....     ..+.+.+++.+++..++.
T Consensus        46 ~i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  118 (271)
T PRK14238         46 DIHENEVTAIIGPSGCGKSTY-IKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP  118 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence            478999999999999999999 999999986     477889998764321     123456777777655443

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.79  E-value=3.5e-08  Score=96.40  Aligned_cols=62  Identities=15%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCC------Ch-hhhhhhcccccceeecC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAF------DP-SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~------~~-~~a~~lGv~~~~l~i~~  202 (440)
                      |++|++++|+|+||+||||| ++++.+...+     ..|.++++++...      .. .+.+.+++.+++..++.
T Consensus        39 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~  112 (265)
T PRK14252         39 VHEKQVTALIGPSGCGKSTF-LRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP  112 (265)
T ss_pred             EcCCcEEEEECCCCCCHHHH-HHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCc
Confidence            78999999999999999999 9999998764     5788888876431      11 23445677776654443

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.79  E-value=4.8e-08  Score=95.23  Aligned_cols=68  Identities=25%  Similarity=0.380  Sum_probs=46.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC------CCCC--Ch-hhhhhhcccccceeecCCCCHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA------EHAF--DP-SYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~------E~~~--~~-~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      =+.+|++++|.|+||+||||| ++++++...+..|.+++++      +...  .. .+.+.+++.+++..++...++.
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTL-l~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  108 (257)
T PRK14246         32 KIPNNSIFGIMGPSGSGKSTL-LKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIY  108 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHH
Confidence            467999999999999999999 9999999887765444443      3321  11 2344567766665444333443

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.79  E-value=2.2e-08  Score=100.98  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=107.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhccccccee--ecCCCCHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLI--VCQPDNGEMA-  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~--i~~~~~~ee~-  209 (440)
                      -+++|+.++|+|.+|||||||++ .+..+..+. |.++|+++......      +.+++-+.+++.+  +.+..++.++ 
T Consensus       309 ~L~~gqTlGlVGESGSGKsTlG~-allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII  386 (534)
T COG4172         309 TLRRGQTLGLVGESGSGKSTLGL-ALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII  386 (534)
T ss_pred             EecCCCeEEEEecCCCCcchHHH-HHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence            36899999999999999999954 455666544 88999998654332      3455555554432  1222333333 


Q ss_pred             ----------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          210 ----------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       210 ----------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                                      ...+...+.     -+-+|.-..-..+.|++|  |++|+..+||++                  
T Consensus       387 ~EGL~vh~~~ls~~eR~~rv~~aL~-----EVGLDp~~r~RYPhEFSG--GQRQRIAIARAliLkP~~i~LDEPTSALD~  459 (534)
T COG4172         387 EEGLRVHEPKLSAAERDQRVIEALE-----EVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEPTSALDR  459 (534)
T ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHH-----HcCCChhHhhcCCcccCc--chhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence                            222222222     344565444444578887  888888888887                  


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEE
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE  308 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~  308 (440)
                         .+++.-|+.+-++++.+-+||+|+...+..+|...-++-.|+.++......++
T Consensus       460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if  515 (534)
T COG4172         460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF  515 (534)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence               57778888888999999999999998887766666666666666665554433

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.79  E-value=1.5e-08  Score=112.36  Aligned_cols=136  Identities=19%  Similarity=0.257  Sum_probs=86.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC-----------C-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ-----------P-  203 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~-----------~-  203 (440)
                      =+++|+.++|+|++||||||| ++++.+...+..|.+++|+.+..+-   .+.+.+|+.+++..++.           + 
T Consensus       501 ~i~~Ge~vaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~  579 (710)
T TIGR03796       501 TLQPGQRVALVGGSGSGKSTI-AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT  579 (710)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC
Confidence            478999999999999999999 9999999999999999998764322   36778888876654432           2 


Q ss_pred             CCHHHHHHHHHHH-----HhcC--CcceEEEecccccCCchhhcccchhhhHHHHHHHHH-----------------HHH
Q 013567          204 DNGEMALEIADRM-----CRSG--AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS-----------------QAL  259 (440)
Q Consensus       204 ~~~ee~l~~i~~l-----~~~~--~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~-----------------~~l  259 (440)
                      .+.+++.+.++..     +.+.  +.+-.+-+.      ...++|  |++|+...+|++-                 ..-
T Consensus       580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~------G~~LSG--GQrQRiaLARall~~p~iliLDEptS~LD~~te  651 (710)
T TIGR03796       580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEG------GANLSG--GQRQRLEIARALVRNPSILILDEATSALDPETE  651 (710)
T ss_pred             CCHHHHHHHHHHhCCHHHHHhCcCcccceeccC------CCCCCH--HHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence            2233333332221     1111  111111110      123444  7888888888761                 122


Q ss_pred             HHHHHHHHhcCCEEEEEecccccc
Q 013567          260 RKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       260 ~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ..+...+++.++|+|+++|-.+.+
T Consensus       652 ~~i~~~l~~~~~T~IiitHrl~~i  675 (710)
T TIGR03796       652 KIIDDNLRRRGCTCIIVAHRLSTI  675 (710)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHH
Confidence            233333445689999999987544

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.79  E-value=3.1e-08  Score=95.91  Aligned_cols=69  Identities=17%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.||||+||||| ++++.+...  +   ..|.++++++....     ..+.+.+++.+++..++. .++.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  104 (252)
T PRK14239         27 DFYPNEITALIGPSGSGKSTL-LRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYE  104 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHH
Confidence            468999999999999999999 999998743  4   37889998865421     123456777777655544 44443


Q ss_pred             H
Q 013567          209 A  209 (440)
Q Consensus       209 ~  209 (440)
                      .
T Consensus       105 n  105 (252)
T PRK14239        105 N  105 (252)
T ss_pred             H
Confidence            3

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.79  E-value=1.6e-08  Score=121.23  Aligned_cols=155  Identities=14%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      .+++|++++|.|+||+||||| ++++.++..+..|.+++++.+....  ...+.+|+.+++..+.+..++.+.+.....+
T Consensus       952 ~I~~Gei~aLLG~NGAGKSTL-LkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257       952 TFYENQITAFLGHNGAGKTTT-LSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred             EEcCCcEEEEECCCCChHHHH-HHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence            588999999999999999999 9999999999999999998764322  2345688888776666666666654432111


Q ss_pred             Hh-------c---CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CR-------S---GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~-------~---~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ..       .   .-++.+-++...... ..++++  |++|+...++++                    ++.+.++....
T Consensus      1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257      1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEE-AQDLSG--GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            00       0   001111122222222 244444  677777777766                    23333333333


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccce
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      + .|.|||+++|..+.+...++.......|+.
T Consensus      1108 ~-~g~TIIltTHdmdea~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257      1108 R-SGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138 (2272)
T ss_pred             h-CCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence            4 489999999998876655554445555554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.79  E-value=4.4e-08  Score=104.09  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=82.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccccce---eecCCCCHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVENL---IVCQPDNGEM---  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~~l---~i~~~~~~ee---  208 (440)
                      -+++|++++|.|+|||||||| ++++.+..++..|.++++++......    +.+.+++.+++.   .+++..+..+   
T Consensus       270 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~  348 (491)
T PRK10982        270 DLHKGEILGIAGLVGAKRTDI-VETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSL  348 (491)
T ss_pred             EEeCCcEEEEecCCCCCHHHH-HHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhee
Confidence            378999999999999999999 99999999999999999876432211    123355554431   1122111110   


Q ss_pred             ------------------HHHHHHHHHhcCCcceEEE-ecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          209 ------------------ALEIADRMCRSGAIDLICV-DSVSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       209 ------------------~l~~i~~l~~~~~~~lvVI-Dsl~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                                        ....++.++.     .+-+ +...... ..++++  |++|+...++++              
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gq~qrv~la~al~~~p~illLDEPt~  420 (491)
T PRK10982        349 ISNIRNYKNKVGLLDNSRMKSDTQWVID-----SMRVKTPGHRTQ-IGSLSG--GNQQKVIIGRWLLTQPEILMLDEPTR  420 (491)
T ss_pred             hhhhhhhcccccccCcHHHHHHHHHHHH-----hcCccCCCcccc-cccCCc--HHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence                              0111111111     1112 1111111 245555  777877777776              


Q ss_pred             ------HHHHHHHHHHHHhcCCEEEEEeccccccccc
Q 013567          256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGVY  286 (440)
Q Consensus       256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~  286 (440)
                            ...+.++...+++.+.|||+++|..+.+...
T Consensus       421 gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~  457 (491)
T PRK10982        421 GIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI  457 (491)
T ss_pred             ccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhh
Confidence                  3344444444456799999999998766543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.78  E-value=2.2e-08  Score=107.33  Aligned_cols=152  Identities=13%  Similarity=0.135  Sum_probs=92.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCCh---h---h-hhhhccccccee--ecCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDP---S---Y-SKALGVDVENLI--VCQPD  204 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~---~---~-a~~lGv~~~~l~--i~~~~  204 (440)
                      -+.+|++++|.|||||||||| ++++++...+     ..|.++++++.....   .   + .+.+|+.+++..  +....
T Consensus        31 ~i~~Ge~~~iiG~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~  109 (529)
T PRK15134         31 QIEAGETLALVGESGSGKSVT-ALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH  109 (529)
T ss_pred             EEeCCCEEEEECCCCCcHHHH-HHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchh
Confidence            567999999999999999999 9999999875     578899988754221   1   1 135788777642  22223


Q ss_pred             CHHHHHH----------------HHHHHHhcCCcceEEEeccc---ccCCchhhcccchhhhHHHHHHHH----------
Q 013567          205 NGEMALE----------------IADRMCRSGAIDLICVDSVS---ALTPRAEIEGEIGMQQIGLQARLM----------  255 (440)
Q Consensus       205 ~~ee~l~----------------~i~~l~~~~~~~lvVIDsl~---~l~~~~el~~~~g~~q~~~~ar~l----------  255 (440)
                      ++.+.+.                .+.+++.     .+-++...   .-. ..++++  |++|+...++++          
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~~~~-~~~LSg--Ge~qrv~iAraL~~~p~llllD  181 (529)
T PRK15134        110 TLEKQLYEVLSLHRGMRREAARGEILNCLD-----RVGIRQAAKRLTDY-PHQLSG--GERQRVMIAMALLTRPELLIAD  181 (529)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HCCCCChHHHHhhC-CcccCH--HHHHHHHHHHHHhcCCCEEEEc
Confidence            3333221                1111111     12222211   111 245555  788888888876          


Q ss_pred             -----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          256 -----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       256 -----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                                 ..++..|.++.++.+.|||+++|..+.+...++.......|...
T Consensus       182 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~  236 (529)
T PRK15134        182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV  236 (529)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence                       23344444544556899999999987665555555455555543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.78  E-value=3.6e-08  Score=95.61  Aligned_cols=62  Identities=24%  Similarity=0.489  Sum_probs=45.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCCh-----hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDP-----SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~  201 (440)
                      -|++|++++|.|||||||||| ++++.++..+     ..|.++++++.....     ...+.+++.+++..++
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   99 (253)
T PRK14261         28 SIPKNRVTALIGPSGCGKSTL-LRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF   99 (253)
T ss_pred             EECCCcEEEEECCCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence            468999999999999999999 9999988642     368888887653321     2334577776665444

>PRK13409 putative ATPase RIL; Provisional

Probab=98.78  E-value=1.3e-08  Score=110.24  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=36.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      .-+++|++++|.||||+||||| ++++++..++..|.++++
T Consensus       360 ~~i~~Geiv~l~G~NGsGKSTL-lk~L~Gl~~p~~G~I~~~  399 (590)
T PRK13409        360 GEIYEGEVIGIVGPNGIGKTTF-AKLLAGVLKPDEGEVDPE  399 (590)
T ss_pred             eEECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEEe
Confidence            4579999999999999999999 999999999888888775

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.78  E-value=4.3e-08  Score=96.03  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      -|++|++++|.||||+||||| ++++++...+..|.++++++
T Consensus        46 ~i~~Ge~~~liG~NGsGKSTL-lk~L~Gl~~p~~G~I~~~g~   86 (264)
T PRK13546         46 KAYEGDVIGLVGINGSGKSTL-SNIIGGSLSPTVGKVDRNGE   86 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCE
Confidence            367999999999999999999 99999999888888888774

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.78  E-value=3.9e-08  Score=99.37  Aligned_cols=155  Identities=12%  Similarity=0.133  Sum_probs=89.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCCh-----hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -|++|++++|+|++||||||| ++++.+...     +..|.++|++......     .+.+.+++.++...++. .+..+
T Consensus       104 ~I~~Ge~v~IvG~~GsGKSTL-l~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~e  181 (329)
T PRK14257        104 DIKRNKVTAFIGPSGCGKSTF-LRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFD  181 (329)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHH
Confidence            588999999999999999999 899988875     3578899998865321     23456787777655543 33332


Q ss_pred             HHHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          209 ALEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       209 ~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                      .+..                +...++.....- -++....-. ...+++  |++|+...+|++                 
T Consensus       182 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~l~~~~~~~-~~~LSg--GqkqRl~LARAl~~~p~IlLLDEPts~LD  257 (329)
T PRK14257        182 NVAYGPRNNGINDRKILEKIVEKSLKSAALWD-EVKDDLDKA-GNALSG--GQQQRLCIARAIALEPEVLLMDEPTSALD  257 (329)
T ss_pred             HHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-hhhhhhhCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence            2221                111111111100 011111111 133443  788888888876                 


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                         ...+..+...+.+ ++|||+++|..+.+...++.......|....
T Consensus       258 ~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e  304 (329)
T PRK14257        258 PIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEE  304 (329)
T ss_pred             HHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence               2233333333333 6999999999876554344444444444433

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.77  E-value=2.7e-08  Score=93.31  Aligned_cols=40  Identities=35%  Similarity=0.531  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|++++|.||||+||||| ++++.+...+..|.+++++
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTL-l~~i~G~~~~~~G~i~~~g   66 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSL-LSALLGELEKLSGSVSVPG   66 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCcCCCCCCeEEEcC
Confidence            478999999999999999999 9999999999899888876

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.77  E-value=4.2e-08  Score=96.70  Aligned_cols=61  Identities=25%  Similarity=0.386  Sum_probs=48.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -|++|++++|+|++|+||||| ++++.++.. ..|.+++++......   .+.+.+++.+++..++
T Consensus        26 ~I~~Ge~~~IvG~nGsGKSTL-l~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf   89 (275)
T cd03289          26 SISPGQRVGLLGRTGSGKSTL-LSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIF   89 (275)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccc
Confidence            578999999999999999999 999999987 679999998754321   2455678877665544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.77  E-value=3.1e-08  Score=109.42  Aligned_cols=138  Identities=23%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC-----------CC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ-----------PD  204 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~-----------~~  204 (440)
                      =+++|+.++|+|++||||||| ++++.+...+..|.+++|+.+..+.   .+.+.+|+.+++..+++           +.
T Consensus       475 ~i~~Ge~vaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~  553 (686)
T TIGR03797       475 QIEPGEFVAIVGPSGSGKSTL-LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL  553 (686)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCC
Confidence            488999999999999999999 9999999999999999998764332   36677888887665543           22


Q ss_pred             CHHHHHHHHHHH-----HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------HHHHHHH
Q 013567          205 NGEMALEIADRM-----CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------------SQALRKM  262 (440)
Q Consensus       205 ~~ee~l~~i~~l-----~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------------~~~l~~L  262 (440)
                      +.+++.+.++..     +.+..-   -.|..-.-- ...+++  |++|+...+|++                 ...-+.+
T Consensus       554 ~~e~i~~al~~a~l~~~i~~lp~---G~dt~ige~-G~~LSG--GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i  627 (686)
T TIGR03797       554 TLDEAWEAARMAGLAEDIRAMPM---GMHTVISEG-GGTLSG--GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV  627 (686)
T ss_pred             CHHHHHHHHHHcCcHHHHHhccc---cccccccCC-CCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence            333333332221     111000   011110000 123343  788888888876                 1122333


Q ss_pred             HHHHHhcCCEEEEEecccccc
Q 013567          263 SGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       263 ~~lak~~~~tVI~inhl~~~i  283 (440)
                      .+.+++.++|+|+++|-.+.+
T Consensus       628 ~~~L~~~~~T~IiItHr~~~i  648 (686)
T TIGR03797       628 SESLERLKVTRIVIAHRLSTI  648 (686)
T ss_pred             HHHHHHhCCeEEEEecChHHH
Confidence            334445578999999987544

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.77  E-value=2.5e-08  Score=107.99  Aligned_cols=62  Identities=21%  Similarity=0.396  Sum_probs=51.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+.   .+.+.+++.+++..++
T Consensus       365 ~i~~G~~~aIvG~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf  429 (582)
T PRK11176        365 KIPAGKTVALVGRSGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF  429 (582)
T ss_pred             EeCCCCEEEEECCCCCCHHHH-HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee
Confidence            478999999999999999999 9999999999999999998754322   3567788888765543

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.76  E-value=5.8e-08  Score=94.01  Aligned_cols=68  Identities=13%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      =|.+|++++|.|+||+||||| ++++.++..  +   ..|.++++++....    . .+.+.+++.+++..++. .++.+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~  104 (252)
T PRK14255         27 DFNQNEITALIGPSGCGKSTY-LRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYE  104 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHH
Confidence            478999999999999999999 999999764  3   37889998875421    1 23345777776654443 34443

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=98.75  E-value=7.6e-08  Score=94.53  Aligned_cols=133  Identities=17%  Similarity=0.251  Sum_probs=91.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh----------hcCCcEEEEcCCCCCChh------hhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ----------KLGGNAMLVDAEHAFDPS------YSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~----------~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~~  202 (440)
                      -+..|-...|+|++|.||||++|.++..+.          ...++++|++.|...+..      ...++|+.+.++...+
T Consensus        85 ~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~d  164 (402)
T COG3598          85 FFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMD  164 (402)
T ss_pred             HhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhhee
Confidence            345666788889999999999998877664          245899999999877664      2446787765443222


Q ss_pred             C------CC----H-HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 013567          203 P------DN----G-EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGC  271 (440)
Q Consensus       203 ~------~~----~-ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~  271 (440)
                      .      ..    + ..++........+..++++|||++..++...+..        ..+   +..+++++.+++..++|
T Consensus       165 ltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s--------~vq---v~~fi~~~rkla~~l~c  233 (402)
T COG3598         165 LTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSIS--------DVQ---VKEFIKKTRKLARNLEC  233 (402)
T ss_pred             ccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccch--------hHH---HHHHHHHHHHHHHhcCC
Confidence            2      11    0 1234444444556679999999999888532222        122   45667777778899999


Q ss_pred             EEEEEeccccc
Q 013567          272 TLIFLNQIRYK  282 (440)
Q Consensus       272 tVI~inhl~~~  282 (440)
                      .||++.|....
T Consensus       234 aIiy~hHtsks  244 (402)
T COG3598         234 AIIYIHHTSKS  244 (402)
T ss_pred             eEEEEeccccc
Confidence            99999998753

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.75  E-value=3.6e-08  Score=106.11  Aligned_cols=140  Identities=11%  Similarity=0.128  Sum_probs=84.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHH----HHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGE----MALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~e----e~l~  211 (440)
                      -+++|+.++|+||+||||||| ++++.+...+..|.+++++.+..+.   .+.+.+++.+++..+++....+    .-.+
T Consensus       345 ~i~~G~~~aivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~  423 (547)
T PRK10522        345 TIKRGELLFLIGGNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPA  423 (547)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHH
Confidence            478999999999999999999 8999999999999999998754332   3556778877766544321100    0011


Q ss_pred             HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcC
Q 013567          212 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAG  270 (440)
Q Consensus       212 ~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~  270 (440)
                      .+.+.++..+.+..+ +..........+++  |++|+...+|++                     ..+.+.|....++.+
T Consensus       424 ~~~~~~~~~~l~~~~-~~~~~~~~G~~LSg--Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~  500 (547)
T PRK10522        424 LVEKWLERLKMAHKL-ELEDGRISNLKLSK--GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG  500 (547)
T ss_pred             HHHHHHHHcCCchhh-hccccCCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            122222221211110 00000000123444  788888888876                     223344444444568


Q ss_pred             CEEEEEeccccc
Q 013567          271 CTLIFLNQIRYK  282 (440)
Q Consensus       271 ~tVI~inhl~~~  282 (440)
                      .|||+++|..+.
T Consensus       501 ~tvi~itH~~~~  512 (547)
T PRK10522        501 KTIFAISHDDHY  512 (547)
T ss_pred             CEEEEEEechHH
Confidence            999999997643

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.74  E-value=5.8e-08  Score=94.91  Aligned_cols=63  Identities=17%  Similarity=0.373  Sum_probs=47.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCC----C-hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAF----D-PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~----~-~~~a~~lGv~~~~l~i~~  202 (440)
                      =+++|++++|.|+||+||||| +++++++..     +..|.++++++...    . ..+.+.+++.+++..++.
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  104 (264)
T PRK14243         32 DIPKNQITAFIGPSGCGKSTI-LRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP  104 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence            478999999999999999999 999999875     25788999886532    1 123456777777655443

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.74  E-value=1.1e-07  Score=88.71  Aligned_cols=70  Identities=20%  Similarity=0.257  Sum_probs=53.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      -+++|++.+|.||||+||||| |+.+.+...+++|.+-+++......   .+++..++.+++-.+.-|.++.++
T Consensus        23 ~~~pGev~ailGPNGAGKSTl-Lk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV   95 (259)
T COG4559          23 DLRPGEVLAILGPNGAGKSTL-LKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV   95 (259)
T ss_pred             eccCCcEEEEECCCCccHHHH-HHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHH
Confidence            478999999999999999999 9999999998888887776653322   367778888877665545444443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.74  E-value=5.6e-08  Score=103.25  Aligned_cols=57  Identities=23%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCC--h--hhhhhhcccccc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFD--P--SYSKALGVDVEN  197 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~--~--~~a~~lGv~~~~  197 (440)
                      +++|++++|.|||||||||| ++++.+...+ ..|.++++++....  .  .+.+.+|+.+++
T Consensus       283 i~~Ge~~~i~G~NGsGKSTL-l~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~  344 (490)
T PRK10938        283 VNPGEHWQIVGPNGAGKSTL-LSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSS  344 (490)
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHH
Confidence            78999999999999999999 9999997654 47888888764311  1  123456666654

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.73  E-value=2.3e-08  Score=109.82  Aligned_cols=61  Identities=28%  Similarity=0.380  Sum_probs=52.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccccccee
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLI  199 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~  199 (440)
                      =-|++|+.++|+|++||||||| ++++.++..|..|.+++|+-+-.+-   .+++.+|+.+++..
T Consensus       494 L~I~~Ge~vaIvG~SGsGKSTL-~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~  557 (709)
T COG2274         494 LEIPPGEKVAIVGRSGSGKSTL-LKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF  557 (709)
T ss_pred             EEeCCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence            3699999999999999999999 9999999999999999998864332   26788998886544

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.73  E-value=6.5e-08  Score=96.66  Aligned_cols=62  Identities=16%  Similarity=0.373  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~  201 (440)
                      -|.+|++++|+|+||+||||| ++++++...     +..|.+++++.....    . .+.+.+++.+++..++
T Consensus        67 ~i~~Ge~~~IvG~nGsGKSTL-l~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  138 (305)
T PRK14264         67 DIPEKSVTALIGPSGCGKSTF-LRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPF  138 (305)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccc
Confidence            378999999999999999999 999999875     468889998864321    1 2345677777765444

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.73  E-value=3.4e-08  Score=107.13  Aligned_cols=60  Identities=25%  Similarity=0.357  Sum_probs=49.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i  200 (440)
                      -+++|+.++|+|++||||||| ++++.+.. +..|.+++++.+..+-   .+.+.+++.+++.++
T Consensus       372 ~i~~G~~vaIvG~SGsGKSTL-~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L  434 (588)
T PRK11174        372 TLPAGQRIALVGPSGAGKTSL-LNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL  434 (588)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC
Confidence            478999999999999999999 89999999 8899999998654322   366778888766544

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.72  E-value=8.1e-08  Score=103.68  Aligned_cols=147  Identities=16%  Similarity=0.131  Sum_probs=88.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-HHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA-DRM-  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-~~l-  216 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.++++..        ..+|+.+++..+.+..++.+.+... ..+ 
T Consensus        29 ~i~~Ge~~~iiG~NGsGKSTL-lk~i~G~~~p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~   99 (556)
T PRK11819         29 SFFPGAKIGVLGLNGAGKSTL-LRIMAGVDKEFEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVK   99 (556)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHH
Confidence            578999999999999999999 99999999888888887531        2355555554444333443332210 000 


Q ss_pred             -----H-------hcC--------------------------------CcceEEEecccccCCchhhcccchhhhHHHHH
Q 013567          217 -----C-------RSG--------------------------------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQA  252 (440)
Q Consensus       217 -----~-------~~~--------------------------------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~a  252 (440)
                           .       ...                                -.+.+-++.. .. +..++++  |++++...+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~-~~~~LSg--Gqkqrv~la  175 (556)
T PRK11819        100 AALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DA-KVTKLSG--GERRRVALC  175 (556)
T ss_pred             HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcc-cC-chhhcCH--HHHHHHHHH
Confidence                 0       000                                0001111111 11 1244554  777777777


Q ss_pred             HHH-----------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccce
Q 013567          253 RLM-----------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       253 r~l-----------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      +++                 ......+..++++.+.|||+++|..+.+...++.......|..
T Consensus       176 ~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i  238 (556)
T PRK11819        176 RLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG  238 (556)
T ss_pred             HHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence            776                 2344455666666677999999998877655554445555544

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.72  E-value=4.6e-08  Score=90.22  Aligned_cols=134  Identities=22%  Similarity=0.250  Sum_probs=87.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH----------
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE----------  207 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e----------  207 (440)
                      =+|.+|+.+.+.||+||||||| |+++++...+..|.+-+++.....+-  ..-|+.++|--+.+-.++-          
T Consensus        26 L~ia~ge~vv~lGpSGcGKTTL-Lnl~AGf~~P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~  102 (259)
T COG4525          26 LTIASGELVVVLGPSGCGKTTL-LNLIAGFVTPSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR  102 (259)
T ss_pred             eeecCCCEEEEEcCCCccHHHH-HHHHhcCcCcccceEEECCEeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhc
Confidence            4788999999999999999999 99999999999999988876433221  1234555544333332222          


Q ss_pred             -----HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHH-H
Q 013567          208 -----MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALR-K  261 (440)
Q Consensus       208 -----e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~-~  261 (440)
                           +-.+++.+++.     +|-+.....-+ ..+++|  |++|+...+|++                    ++.++ .
T Consensus       103 Gi~k~~R~~~a~q~l~-----~VgL~~~~~~~-i~qLSG--GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQel  174 (259)
T COG4525         103 GIEKAQRREIAHQMLA-----LVGLEGAEHKY-IWQLSG--GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL  174 (259)
T ss_pred             CCCHHHHHHHHHHHHH-----HhCcccccccc-eEeecc--hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHH
Confidence                 22223333322     23333322222 255565  788888888876                    23333 3


Q ss_pred             HHHHHHhcCCEEEEEeccccc
Q 013567          262 MSGNASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~  282 (440)
                      |..+.++.|.-+++|+|..++
T Consensus       175 Lldlw~~tgk~~lliTH~ieE  195 (259)
T COG4525         175 LLDLWQETGKQVLLITHDIEE  195 (259)
T ss_pred             HHHHHHHhCCeEEEEeccHHH
Confidence            556778899999999998764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.72  E-value=4.1e-08  Score=108.93  Aligned_cols=62  Identities=19%  Similarity=0.348  Sum_probs=51.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+||+|+||||| ++++.+...+.+|.+++|+.+..+.   .+.+.+++.+++..++
T Consensus       503 ~i~~Ge~vaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF  567 (711)
T TIGR00958       503 TLHPGEVVALVGPSGSGKSTV-AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF  567 (711)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccc
Confidence            478999999999999999999 9999999999999999998754322   3567788877765543

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.71  E-value=8.7e-08  Score=92.68  Aligned_cols=62  Identities=18%  Similarity=0.411  Sum_probs=46.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~  201 (440)
                      -|++|++++|.|+||+||||| ++++.+...  +   ..|.+++++.....    . .+.+.+++.+++..++
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~   96 (250)
T PRK14266         25 DIPKNSVTALIGPSGCGKSTF-IRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF   96 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence            478999999999999999999 999998764  2   67889998875432    1 2345677777664443

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.70  E-value=8.2e-08  Score=93.46  Aligned_cols=61  Identities=20%  Similarity=0.275  Sum_probs=47.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i  200 (440)
                      =+++|++++|.|+||+||||| ++++.+...+..|.+++++.....   ..+.+.+++.+++..+
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l  106 (257)
T cd03288          43 YIKPGQKVGICGRTGSGKSSL-SLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPIL  106 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcc
Confidence            478999999999999999999 999999999999999998865322   1234556766655433

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.69  E-value=5.7e-08  Score=105.22  Aligned_cols=62  Identities=19%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+||+|+||||| ++++.+...+..|.+++++.+..+.   .+.+.+++.+++..++
T Consensus       362 ~i~~G~~~aivG~sGsGKSTL-~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  426 (574)
T PRK11160        362 QIKAGEKVALLGRTGCGKSTL-LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF  426 (574)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhh
Confidence            478999999999999999999 9999999999999999998754332   3566788887765544

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.68  E-value=1.1e-07  Score=92.82  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML  176 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~  176 (440)
                      .|+.+-  =+.+|++++|.||||+||||| ++++.++.++..|.++
T Consensus        16 ~l~~i~--~i~~Ge~~~IvG~nGsGKSTL-lk~l~Gl~~p~~G~I~   58 (255)
T cd03236          16 KLHRLP--VPREGQVLGLVGPNGIGKSTA-LKILAGKLKPNLGKFD   58 (255)
T ss_pred             hhhcCC--CCCCCCEEEEECCCCCCHHHH-HHHHhCCcCCCCceEe
Confidence            455543  278999999999999999999 9999999999888886

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.68  E-value=3e-07  Score=84.66  Aligned_cols=123  Identities=15%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-h---------hhhhhhccccccee-ecCCCCH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-P---------SYSKALGVDVENLI-VCQPDNG-  206 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~---------~~a~~lGv~~~~l~-i~~~~~~-  206 (440)
                      =+++|+++.|.||||+||||| ++++..    ..+.+.+....... .         .....+++....+. .....+. 
T Consensus        17 ~i~~G~~~~l~G~nG~GKSTL-l~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgG   91 (176)
T cd03238          17 SIPLNVLVVVTGVSGSGKSTL-VNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGG   91 (176)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhh----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHH
Confidence            478999999999999999999 777742    33445454331110 0         12233443211000 0111222 


Q ss_pred             -HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          207 -EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       207 -ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                       .+.+.+++.++..+.++++++|....-.+..             ..+.+.+.+   ..+ ++.+.|||+++|..+.+
T Consensus        92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~-------------~~~~l~~~l---~~~-~~~g~tvIivSH~~~~~  152 (176)
T cd03238          92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQ-------------DINQLLEVI---KGL-IDLGNTVILIEHNLDVL  152 (176)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH-------------HHHHHHHHH---HHH-HhCCCEEEEEeCCHHHH
Confidence             3345566666664458999999987665311             111223333   333 34699999999997643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.67  E-value=5.9e-08  Score=103.98  Aligned_cols=62  Identities=24%  Similarity=0.356  Sum_probs=51.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+||+||||||| ++++.+...+..|.+++++.+..  ...+.+.+++.+++.+++
T Consensus       357 ~i~~G~~vaIvG~SGsGKSTL-l~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF  420 (529)
T TIGR02868       357 DLPPGERVAILGPSGSGKSTL-LMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLF  420 (529)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccc
Confidence            478999999999999999999 89999999999999999986533  223566788888766544

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.67  E-value=7.2e-08  Score=104.71  Aligned_cols=63  Identities=17%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~  202 (440)
                      =+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+  . .+.+.+++.+++..+++
T Consensus       363 ~i~~Ge~iaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~  428 (592)
T PRK10790        363 SVPSRGFVALVGHTGSGKSTL-ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA  428 (592)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc
Confidence            478999999999999999999 999999999999999999875432  2 36777888887665543

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.67  E-value=9.2e-08  Score=103.42  Aligned_cols=79  Identities=23%  Similarity=0.304  Sum_probs=59.9

Q ss_pred             ccccccCcHH----HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccc
Q 013567          122 VETFPSGCLT----LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVD  194 (440)
Q Consensus       122 ~~~i~TGi~~----LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~  194 (440)
                      .+.++.+++.    |+.+- =-+++|+.++|+||+||||||+ .+++.+...+..|.+++|+.+..+-   .+.+.+++.
T Consensus       331 f~~vsf~y~~~~~vl~~is-~~i~~Ge~vaiVG~sGsGKSTl-~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V  408 (567)
T COG1132         331 FENVSFSYPGKKPVLKDIS-FSIEPGEKVAIVGPSGSGKSTL-IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV  408 (567)
T ss_pred             EEEEEEEcCCCCccccCce-EEEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence            4456666653    33221 3489999999999999999999 9999999999999999987654433   367788888


Q ss_pred             ccceeecC
Q 013567          195 VENLIVCQ  202 (440)
Q Consensus       195 ~~~l~i~~  202 (440)
                      +++.+++.
T Consensus       409 ~Qd~~LF~  416 (567)
T COG1132         409 SQDPLLFS  416 (567)
T ss_pred             cccceeec
Confidence            87665544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.66  E-value=1.4e-07  Score=101.81  Aligned_cols=62  Identities=18%  Similarity=0.132  Sum_probs=46.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      --|++|++++|.|||||||||| ++++++...+..|.++++..        ..+|+.+++..+.+..++.+
T Consensus        26 ~~i~~Ge~~~liG~NGsGKSTL-l~~i~G~~~p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e   87 (552)
T TIGR03719        26 LSFFPGAKIGVLGLNGAGKSTL-LRIMAGVDKEFNGEARPAPG--------IKVGYLPQEPQLDPTKTVRE   87 (552)
T ss_pred             EEECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC--------CEEEEEeccCCCCCCCcHHH
Confidence            3578999999999999999999 99999999888888887631        24555555544444434433

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.65  E-value=9.2e-08  Score=102.49  Aligned_cols=62  Identities=21%  Similarity=0.342  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+||+|+||||| ++++.+...+..|.+++++.+..+   ..+.+.+++.+++.+++
T Consensus       344 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf  408 (529)
T TIGR02857       344 TVPPGERVALVGPSGAGKSTL-LNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF  408 (529)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc
Confidence            578999999999999999999 999999999999999999875432   23567788887766554

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=1.1e-07  Score=102.00  Aligned_cols=40  Identities=25%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -|++|++++|.|||||||||| ++++++...+..|.+++++
T Consensus       341 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~G~~~p~~G~i~~~~  380 (530)
T PRK15064        341 LLEAGERLAIIGENGVGKTTL-LRTLVGELEPDSGTVKWSE  380 (530)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECC
Confidence            478999999999999999999 9999999988888888865

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.65  E-value=7.4e-08  Score=101.96  Aligned_cols=43  Identities=33%  Similarity=0.415  Sum_probs=38.6

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      =-+++|++++|.||||+||||| ++++++...+..|.+++++..
T Consensus        45 fsI~~GEivgIiGpNGSGKSTL-LkiLaGLl~P~sGeI~I~G~~   87 (549)
T PRK13545         45 FEVPEGEIVGIIGLNGSGKSTL-SNLIAGVTMPNKGTVDIKGSA   87 (549)
T ss_pred             EEEeCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCceEEEECCEe
Confidence            3578999999999999999999 999999999989999887653

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=98.65  E-value=1.3e-07  Score=86.60  Aligned_cols=120  Identities=16%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc----cccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV----DVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv----~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      ++.|.|++|||||+||.+++..   .+.+++|+.+....+..+.+++.-    .+..+...  ....++.+.+..   ..
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~--E~~~~l~~~l~~---~~   72 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI--ETPRDLVSALKE---LD   72 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe--ecHHHHHHHHHh---cC
Confidence            4789999999999999999865   467899999999888875555322    12222111  112222232222   12


Q ss_pred             CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013567          221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ  278 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inh  278 (440)
                      +.+.|+||+++.+.. ..+..+.+  ..   ...+...+..|...+++.++++|+++.
T Consensus        73 ~~~~VLIDclt~~~~-n~l~~~~~--~~---~~~~~~~i~~l~~~l~~~~~~~viVsn  124 (169)
T cd00544          73 PGDVVLIDCLTLWVT-NLLFADLE--EW---EAAIADEIDALLAAVRNKPGTLILVSN  124 (169)
T ss_pred             CCCEEEEEcHhHHHH-HhCCCccc--cc---hhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            567899999999874 33321100  00   011334556667777778888887764

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.64  E-value=1.3e-07  Score=97.97  Aligned_cols=64  Identities=20%  Similarity=0.370  Sum_probs=54.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC--CChh-hhhhhcccccceeecCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA--FDPS-YSKALGVDVENLIVCQP  203 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~--~~~~-~a~~lGv~~~~l~i~~~  203 (440)
                      -+++|+..+|.||+||||||| .+++.+...+..|.+.+|+-+-  ++++ +-+.+|+-++++.+++.
T Consensus       358 ~l~~G~~lgIIGPSgSGKSTL-aR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G  424 (580)
T COG4618         358 ALQAGEALGIIGPSGSGKSTL-ARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG  424 (580)
T ss_pred             EecCCceEEEECCCCccHHHH-HHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC
Confidence            368999999999999999999 8999999999999999998753  3333 67789999988876643

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.64  E-value=9.5e-08  Score=105.75  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=50.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i  200 (440)
                      -+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+-   .+.+.+++.+++..+
T Consensus       479 ~i~~G~~vaivG~sGsGKSTL-~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l  542 (694)
T TIGR01846       479 DIKPGEFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL  542 (694)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence            479999999999999999999 9999999999999999998764322   356678887766544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.63  E-value=7.7e-08  Score=105.45  Aligned_cols=38  Identities=24%  Similarity=0.447  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      -|.+|++++|+|||||||||| ++++.+...+..|.+++
T Consensus       341 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~G~~~p~~G~i~~  378 (635)
T PRK11147        341 QVQRGDKIALIGPNGCGKTTL-LKLMLGQLQADSGRIHC  378 (635)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEE
Confidence            478999999999999999999 99999998888888877

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.63  E-value=4.8e-07  Score=81.15  Aligned_cols=135  Identities=16%  Similarity=0.277  Sum_probs=88.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC-----CC-h---hhhhhhcccccceeecCCCCHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA-----FD-P---SYSKALGVDVENLIVCQPDNGE--  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~-----~~-~---~~a~~lGv~~~~l~i~~~~~~e--  207 (440)
                      --+.|+.+.+.||+|+|||+| ++.+.-+.-+..|.+-|.+.+-     +. .   .+.+.+|+.++...+++..++-  
T Consensus        24 ~~~~getlvllgpsgagkssl-lr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~en  102 (242)
T COG4161          24 DCPEGETLVLLGPSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQEN  102 (242)
T ss_pred             cCCCCCEEEEECCCCCchHHH-HHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHH
Confidence            347899999999999999999 9998888888888887765431     11 1   1567789999887776655442  


Q ss_pred             --------------HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567          208 --------------MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       208 --------------e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------  255 (440)
                                    +....+.++++     .+-+...+.-+| -.++|  |++|+..++|++                  
T Consensus       103 lieap~kv~gl~~~qa~~~a~ellk-----rlrl~~~adr~p-lhlsg--gqqqrvaiaralmmkpqvllfdeptaaldp  174 (242)
T COG4161         103 LIEAPCRVLGLSKDQALARAEKLLK-----RLRLKPYADRYP-LHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDP  174 (242)
T ss_pred             HHhhhHHHhCCCHHHHHHHHHHHHH-----HhccccccccCc-eeccc--chhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence                          22233333332     222333444443 44555  778888888875                  


Q ss_pred             --HHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567          256 --SQALRKMSGNASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       256 --~~~l~~L~~lak~~~~tVI~inhl~~~  282 (440)
                        ...+-.+.+-+.+.|+|-++++|..+.
T Consensus       175 eitaqvv~iikel~~tgitqvivthev~v  203 (242)
T COG4161         175 EITAQIVSIIKELAETGITQVIVTHEVEV  203 (242)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence              222333444456789999999998653

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.63  E-value=1.1e-07  Score=102.37  Aligned_cols=62  Identities=23%  Similarity=0.370  Sum_probs=50.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+||+|+||||| ++++.+...+..|.+++++....+   ..+.+.+++.+++..++
T Consensus       340 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf  404 (544)
T TIGR01842       340 RLQAGEALAIIGPSGSGKSTL-ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF  404 (544)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc
Confidence            478999999999999999999 999999999999999998865322   12456678777765543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.4e-07  Score=99.32  Aligned_cols=62  Identities=18%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|+.++|+|++|+||||| ++++.+..++..|.+.+++-+..+.   .+.+++.+..++-+++
T Consensus       343 t~~~g~~talvG~SGaGKSTL-l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf  407 (559)
T COG4988         343 TIKAGQLTALVGASGAGKSTL-LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF  407 (559)
T ss_pred             EecCCcEEEEECCCCCCHHHH-HHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence            479999999999999999999 9999999999999999997654333   4788888877665544

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.62  E-value=1.3e-07  Score=104.59  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=50.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i  200 (440)
                      =+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+-   .+.+.+++.+++..+
T Consensus       487 ~i~~G~~iaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l  550 (694)
T TIGR03375       487 TIRPGEKVAIIGRIGSGKSTL-LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL  550 (694)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh
Confidence            478999999999999999999 9999999999999999998754322   356778887765443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.62  E-value=1e-07  Score=103.57  Aligned_cols=61  Identities=23%  Similarity=0.378  Sum_probs=50.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i  200 (440)
                      =+++|+.++|+|++|+||||| ++++.+...+..|.+++++.+..+   ..+.+.+++.+++..+
T Consensus       357 ~i~~G~~v~IvG~sGsGKSTL-l~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l  420 (588)
T PRK13657        357 EAKPGQTVAIVGPTGAGKSTL-INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL  420 (588)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc
Confidence            478999999999999999999 899999999999999999875432   2356778887766544

>PLN03140 ABC transporter G family member; Provisional

Probab=98.61  E-value=7.9e-08  Score=113.53  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=98.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIAD  214 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~  214 (440)
                      |-+++|++++|.|||||||||| |+++++...+.   .|.+++++....+....+.+++..++..+....++.|.+....
T Consensus       186 ~~i~~Ge~~~llGpnGSGKSTL-Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a  264 (1470)
T PLN03140        186 GIIKPSRMTLLLGPPSSGKTTL-LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA  264 (1470)
T ss_pred             EEEeCCeEEEEEcCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence            6689999999999999999999 99999998776   7888888765432222345677776655555556666554332


Q ss_pred             HHHh-------------cC---------C----------------------cceEEEecccc-cC---Cchhhcccchhh
Q 013567          215 RMCR-------------SG---------A----------------------IDLICVDSVSA-LT---PRAEIEGEIGMQ  246 (440)
Q Consensus       215 ~l~~-------------~~---------~----------------------~~lvVIDsl~~-l~---~~~el~~~~g~~  246 (440)
                      .+..             ..         .                      .+.+-++.... ..   ....+++  |++
T Consensus       265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSG--Ger  342 (1470)
T PLN03140        265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG--GQK  342 (1470)
T ss_pred             HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCc--ccc
Confidence            2100             00         0                      00111111100 00   0123444  677


Q ss_pred             hHHHHHHHH---------------------HHHHHHHHHHHHhcCCEEEEEeccc-cccccccCCceeecccceeee
Q 013567          247 QIGLQARLM---------------------SQALRKMSGNASKAGCTLIFLNQIR-YKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       247 q~~~~ar~l---------------------~~~l~~L~~lak~~~~tVI~inhl~-~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      ++...++++                     .++++.|+.++++.+.|||+++|.. ..+-.+|++......|+.+.+
T Consensus       343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~  419 (1470)
T PLN03140        343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ  419 (1470)
T ss_pred             eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe
Confidence            777777665                     3556666677777799999999864 455555666556666655443

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.60  E-value=1.7e-07  Score=103.96  Aligned_cols=61  Identities=15%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i  200 (440)
                      =+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+  . .+.+.+|+.+++.++
T Consensus       496 ~i~~G~~vaIvG~SGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l  559 (708)
T TIGR01193       496 TIKMNSKTTIVGMSGSGKSTL-AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI  559 (708)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence            479999999999999999999 899999999999999999875322  2 366778888776544

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=2.1e-07  Score=100.02  Aligned_cols=59  Identities=20%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l  198 (440)
                      -|+||++++++||+|+||||+ ..++.++..|.+|.+.+|+.+..+-.   +.+.+|..-++.
T Consensus       490 ti~pGe~vALVGPSGsGKSTi-asLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP  551 (716)
T KOG0058|consen  490 TIRPGEVVALVGPSGSGKSTI-ASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP  551 (716)
T ss_pred             eeCCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence            589999999999999999999 89999999999999999998754432   556777765443

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.59  E-value=1.6e-07  Score=89.01  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE-EcCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML-VDAE  180 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~-id~E  180 (440)
                      -|++|++++|.|||||||||| ++++++...+..|.++ ++..
T Consensus         9 ~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~~~sG~i~~~~~~   50 (213)
T PRK15177          9 VMGYHEHIGILAAPGSGKTTL-TRLLCGLDAPDEGDFIGLRGD   50 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCccCCCCCEEEecCc
Confidence            378999999999999999999 9999999888888776 6553

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.57  E-value=1.6e-07  Score=101.34  Aligned_cols=39  Identities=33%  Similarity=0.626  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      -+.+|++++|.|||||||||| ++++.+...+..|.+++.
T Consensus       346 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~G~~~p~~G~i~~~  384 (556)
T PRK11819        346 SLPPGGIVGIIGPNGAGKSTL-FKMITGQEQPDSGTIKIG  384 (556)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEEC
Confidence            478999999999999999999 999999998888888874

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.57  E-value=9.7e-08  Score=105.06  Aligned_cols=39  Identities=26%  Similarity=0.501  Sum_probs=35.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      -+++|++++|.||||+||||| ++++.+...+.+|.++++
T Consensus       474 ~i~~Ge~~~IvG~nGsGKSTL-l~lL~Gl~~~~~G~i~~~  512 (659)
T TIGR00954       474 EVPSGNHLLICGPNGCGKSSL-FRILGELWPVYGGRLTKP  512 (659)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEeec
Confidence            478999999999999999999 999999988877877765

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.57  E-value=5.5e-07  Score=85.86  Aligned_cols=56  Identities=21%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC----CChhhhhhhcccc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA----FDPSYSKALGVDV  195 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~----~~~~~a~~lGv~~  195 (440)
                      -+++|+-..|+|||||||||| ++++.+..-+..+.+.+-++..    ....+.+++|+..
T Consensus        53 ~V~~ge~W~I~G~NGsGKTTL-L~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS  112 (257)
T COG1119          53 QVNPGEHWAIVGPNGAGKTTL-LSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVS  112 (257)
T ss_pred             eecCCCcEEEECCCCCCHHHH-HHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccC
Confidence            479999999999999999999 9999998877677666655532    1145677788764

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.57  E-value=1e-07  Score=94.20  Aligned_cols=40  Identities=28%  Similarity=0.357  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      =+++|++++|+|+||+||||| ++++.+...+..|.+++++
T Consensus        59 ~i~~Ge~~~liG~NGsGKSTL-l~~I~Gl~~p~~G~I~i~g   98 (282)
T cd03291          59 KIEKGEMLAITGSTGSGKTSL-LMLILGELEPSEGKIKHSG   98 (282)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECC
Confidence            478999999999999999999 9999999988888777765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=6.2e-07  Score=82.33  Aligned_cols=45  Identities=29%  Similarity=0.440  Sum_probs=41.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP  185 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~  185 (440)
                      |.+|+++.|.||||+||||| |++++++.++..|-+|+.++.....
T Consensus        25 l~~Ge~~~i~G~NG~GKTtL-LRilaGLl~p~~G~v~~~~~~i~~~   69 (209)
T COG4133          25 LNAGEALQITGPNGAGKTTL-LRILAGLLRPDAGEVYWQGEPIQNV   69 (209)
T ss_pred             EcCCCEEEEECCCCCcHHHH-HHHHHcccCCCCCeEEecCCCCccc
Confidence            57899999999999999999 9999999999999999998875543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.57  E-value=1.6e-07  Score=101.40  Aligned_cols=39  Identities=31%  Similarity=0.606  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      -+++|++++|.|||||||||| ++++.+...+..|.++++
T Consensus       344 ~i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~G~i~~~  382 (552)
T TIGR03719       344 KLPPGGIVGVIGPNGAGKSTL-FRMITGQEQPDSGTIKIG  382 (552)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCeEEEEC
Confidence            478999999999999999999 999999988888888874

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.56  E-value=2.1e-07  Score=100.50  Aligned_cols=61  Identities=21%  Similarity=0.400  Sum_probs=50.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i  200 (440)
                      =+++|+.++|.|++|+||||| ++++.+...+..|.+++++.+..+   ..+.+.+++.+++.++
T Consensus       354 ~i~~G~~v~IvG~sGsGKSTL-l~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l  417 (571)
T TIGR02203       354 VIEPGETVALVGRSGSGKSTL-VNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL  417 (571)
T ss_pred             EecCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc
Confidence            478999999999999999999 999999999999999999865322   2356678887765544

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.3e-07  Score=103.64  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      -|.+|++++|+|||||||||| ++++++...++.|.++++..
T Consensus        23 ~i~~Ge~v~LvG~NGsGKSTL-LkiL~G~~~pd~G~I~~~~~   63 (638)
T PRK10636         23 TINPGQKVGLVGKNGCGKSTL-LALLKNEISADGGSYTFPGN   63 (638)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC
Confidence            578999999999999999999 99999998899999888764

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.56  E-value=4.3e-07  Score=80.61  Aligned_cols=63  Identities=21%  Similarity=0.390  Sum_probs=45.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCC-hhhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFD-PSYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~  202 (440)
                      -|.+|+|+.|.||+||||||| +.++.+.....   .|.++++...... +...+.+|+-+++-++++
T Consensus        24 Tia~GeivtlMGPSGcGKSTL-ls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp   90 (213)
T COG4136          24 TIAKGEIVTLMGPSGCGKSTL-LSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP   90 (213)
T ss_pred             EecCCcEEEEECCCCccHHHH-HHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence            477999999999999999999 99998887643   4667777654322 224567888775544433

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.56  E-value=2.2e-07  Score=105.24  Aligned_cols=158  Identities=23%  Similarity=0.297  Sum_probs=94.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhccccccee-----------ecCCC-
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLI-----------VCQPD-  204 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~-----------i~~~~-  204 (440)
                      +|+|+.++|+|++||||||+ ++++.+...|..|.+++|+++..+..   +..++|+..+...           +-.++ 
T Consensus       376 i~~G~~valVG~SGsGKST~-i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da  454 (1228)
T KOG0055|consen  376 IPSGQTVALVGPSGSGKSTL-IQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA  454 (1228)
T ss_pred             eCCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence            79999999999999999999 99999999999999999999765442   5667888776533           22222 


Q ss_pred             CHHHHHHHHHH-----HHhc--CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          205 NGEMALEIADR-----MCRS--GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       205 ~~ee~l~~i~~-----l~~~--~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                      +.+++.+..+.     .+..  .+.+-.+-+.      ...++|  |++|+...||++                    .+
T Consensus       455 t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~------g~qLSG--GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~  526 (1228)
T KOG0055|consen  455 TREEIEEAAKAANAHDFILKLPDGYDTLVGER------GVQLSG--GQKQRIAIARALVRNPKILLLDEATSALDAESER  526 (1228)
T ss_pred             cHHHHHHHHHHccHHHHHHhhHHhhcccccCC------CCCCCh--HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH
Confidence            23333222211     0100  0111111111      122344  677777777766                    22


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEE
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE  308 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~  308 (440)
                      ...+....+.+ |.|.|+|+|-.+.+.. .+.......|+.++...+..|.
T Consensus       527 ~Vq~ALd~~~~-grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi  575 (1228)
T KOG0055|consen  527 VVQEALDKASK-GRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELI  575 (1228)
T ss_pred             HHHHHHHHhhc-CCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHH
Confidence            33343444444 5577778887665543 2333455567776666554433

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.56  E-value=2.3e-07  Score=100.83  Aligned_cols=62  Identities=24%  Similarity=0.335  Sum_probs=50.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+||+|+||||| ++++.+...+..|.+++++.+..+   ..+.+.+++.+++..++
T Consensus       357 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf  421 (585)
T TIGR01192       357 EAKAGQTVAIVGPTGAGKTTL-INLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF  421 (585)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC
Confidence            478999999999999999999 999999999999999999875332   23556778877665443

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PLN03140 ABC transporter G family member; Provisional

Probab=98.55  E-value=3.5e-07  Score=108.13  Aligned_cols=164  Identities=14%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -|+.+ .+-+++|++++|.|||||||||| ++++++....  ..|.+++++.......+.+.+|+..++..+.+..++.|
T Consensus       895 iL~~v-s~~i~~Gel~aL~G~sGaGKTTL-L~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E  972 (1470)
T PLN03140        895 LLREV-TGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE  972 (1470)
T ss_pred             EeeCc-EEEEECCeEEEEECCCCCCHHHH-HHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence            34443 37899999999999999999999 9999998653  35778888765433334556788777655555556665


Q ss_pred             HHHHHHHHHhcC-------------CcceEEEecccccCC----chhhcccchhhhHHHHHHHH----------------
Q 013567          209 ALEIADRMCRSG-------------AIDLICVDSVSALTP----RAEIEGEIGMQQIGLQARLM----------------  255 (440)
Q Consensus       209 ~l~~i~~l~~~~-------------~~~lvVIDsl~~l~~----~~el~~~~g~~q~~~~ar~l----------------  255 (440)
                      .+.....+....             -++.+-++.......    ...+++  |++++...++++                
T Consensus       973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg--GerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140        973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST--EQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence            544322110000             001111222111110    023444  777777777766                


Q ss_pred             -----HHHHHHHHHHHHhcCCEEEEEecccc-ccccccCCceeec-cccee
Q 013567          256 -----SQALRKMSGNASKAGCTLIFLNQIRY-KIGVYYGNPEVTS-GGIAL  299 (440)
Q Consensus       256 -----~~~l~~L~~lak~~~~tVI~inhl~~-~ig~~~~~~~~~~-gG~~l  299 (440)
                           ..+++.|++++ +.|.|||+++|..+ .+-..++...... ||+.+
T Consensus      1051 D~~~a~~v~~~L~~l~-~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140       1051 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred             CHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence                 23444445544 45899999999876 3333444444444 45544

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.55  E-value=1.6e-07  Score=110.95  Aligned_cols=164  Identities=15%  Similarity=0.088  Sum_probs=100.7

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh----hcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCC
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ----KLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDN  205 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~----~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~  205 (440)
                      |+.+ .+-+++|++++|.|||||||||| ++++++..    .+..|.+++++....+  ..+.+.+++..++..+.+..+
T Consensus        77 L~~v-s~~i~~Ge~~aIlG~nGsGKSTL-Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT  154 (1394)
T TIGR00956        77 LKPM-DGLIKPGELTVVLGRPGSGCSTL-LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT  154 (1394)
T ss_pred             eeCC-EEEEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence            5553 37889999999999999999999 99999875    3467889998865322  123344777777655555566


Q ss_pred             HHHHHHHHHHHHh--------------cC----CcceEEEecccccC----CchhhcccchhhhHHHHHHHH--------
Q 013567          206 GEMALEIADRMCR--------------SG----AIDLICVDSVSALT----PRAEIEGEIGMQQIGLQARLM--------  255 (440)
Q Consensus       206 ~ee~l~~i~~l~~--------------~~----~~~lvVIDsl~~l~----~~~el~~~~g~~q~~~~ar~l--------  255 (440)
                      +.|.+.....+..              +.    -.+.+-++....-.    ....+++  |++++...++++        
T Consensus       155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSG--GERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCc--ccchHHHHHHHHHhCCCEEE
Confidence            6665544322100              00    00111122111100    0134555  888888888876        


Q ss_pred             -------------HHHHHHHHHHHHhcCCEEEEEeccc-cccccccCCceeeccccee
Q 013567          256 -------------SQALRKMSGNASKAGCTLIFLNQIR-YKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       256 -------------~~~l~~L~~lak~~~~tVI~inhl~-~~ig~~~~~~~~~~gG~~l  299 (440)
                                   ..+++.|+.++++.|.|||+++|.. ..+-..+++......|+.+
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv  290 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI  290 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence                         3456666666666799999999874 4454445554455555543

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.55  E-value=2.9e-07  Score=99.63  Aligned_cols=62  Identities=24%  Similarity=0.323  Sum_probs=50.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~  201 (440)
                      =+++|+.++|+||+||||||| ++++.+...+..|.+++++.+..+   ..+.+.+++.+++..++
T Consensus       337 ~i~~G~~~~ivG~sGsGKSTL-l~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf  401 (569)
T PRK10789        337 TLKPGQMLGICGPTGSGKSTL-LSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF  401 (569)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence            478999999999999999999 999999999999999998875332   13556678877665544

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.8e-07  Score=102.58  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      -|.+|++++|+|||||||||| ++++.+...+..|.++++
T Consensus       334 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~G~~~p~~G~i~~~  372 (638)
T PRK10636        334 NLVPGSRIGLLGRNGAGKSTL-IKLLAGELAPVSGEIGLA  372 (638)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEEC
Confidence            578999999999999999999 999999998888888775

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.54  E-value=3.9e-07  Score=98.57  Aligned_cols=61  Identities=16%  Similarity=0.330  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i  200 (440)
                      =+++|+.++|.|++|+||||| ++++.+...+..|.+++++.+..+   ..+.+.+++.+++.++
T Consensus       362 ~i~~Ge~i~IvG~sGsGKSTL-lklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l  425 (576)
T TIGR02204       362 TVRPGETVALVGPSGAGKSTL-FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL  425 (576)
T ss_pred             EecCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc
Confidence            478999999999999999999 999999999999999999865322   2356678887766544

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.53  E-value=1.6e-07  Score=102.02  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML  176 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~  176 (440)
                      +++|++++|.||||+||||| ++++++..+++.|.+.
T Consensus        96 i~~Gev~gLvG~NGaGKSTL-lkiL~G~l~p~~G~i~  131 (590)
T PRK13409         96 PKEGKVTGILGPNGIGKTTA-VKILSGELIPNLGDYE  131 (590)
T ss_pred             CCCCCEEEEECCCCCCHHHH-HHHHhCCccCCCcccc
Confidence            67999999999999999999 9999999999888886

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.53  E-value=3.1e-07  Score=108.83  Aligned_cols=64  Identities=16%  Similarity=0.301  Sum_probs=50.5

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC-CCCC--Ch-hhhhhhcccccceeecC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA-EHAF--DP-SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~-E~~~--~~-~~a~~lGv~~~~l~i~~  202 (440)
                      =-+++|++++|+||+||||||| ++++.++..+..|.++++. ....  +. .+.+.+|+.+++..++.
T Consensus       406 l~i~~Ge~vaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~  473 (1466)
T PTZ00265        406 FTLTEGKTYAFVGESGCGKSTI-LKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS  473 (1466)
T ss_pred             EEEcCCCEEEEECCCCCCHHHH-HHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh
Confidence            3589999999999999999999 9999999999999999953 3221  22 24567888887765553

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.53  E-value=3.7e-07  Score=99.41  Aligned_cols=159  Identities=19%  Similarity=0.205  Sum_probs=97.7

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH---
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE---  211 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~---  211 (440)
                      |=+.+|++++|.||+||||||| |.++++-...   -.|.+.++++......+.+..|+..|+-.+.+..+++|.+.   
T Consensus        51 g~~~~Gel~AimG~SGsGKtTL-L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A  129 (613)
T KOG0061|consen   51 GTAKPGELLAIMGPSGSGKTTL-LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSA  129 (613)
T ss_pred             EEEecCeEEEEECCCCCCHHHH-HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHH
Confidence            7789999999999999999999 8888887653   47899999976666666777788777655555555554433   


Q ss_pred             ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                                     +++.++.+-+.. -+-|++-.-.....+++  |++.+...+.++                     
T Consensus       130 ~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSG--GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA  206 (613)
T KOG0061|consen  130 LLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSG--GERKRVSIALELLTDPSILFLDEPTSGLDSFSA  206 (613)
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCcccc--chhhHHHHHHHHHcCCCEEEecCCCCCcchhhH
Confidence                           333332221111 00111110000011222  444444444443                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccc-cccccccCCceeecccceeee
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIR-YKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~-~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      .+.++-|+++|++ |.|||++-|.. ..+=.+|++....+.|..+-+
T Consensus       207 ~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~  252 (613)
T KOG0061|consen  207 LQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYS  252 (613)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence            3567778888988 99999988875 344455666555555544433

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.52  E-value=5.7e-07  Score=98.83  Aligned_cols=150  Identities=16%  Similarity=0.205  Sum_probs=90.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh----hhhhcccccceeecCCCCHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY----SKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~----a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      +++|+++.|.|+||+||||| ++++.+...+..|.++++++.....   .+    .+.+++.+++..+++..+..+.+..
T Consensus        31 i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~  109 (648)
T PRK10535         31 IYAGEMVAIVGASGSGKSTL-MNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV  109 (648)
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH
Confidence            67999999999999999999 9999999999999999998764331   11    3457887777665554443332221


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                                     +..+++     .+-++...... ...+++  |++|+...+|++                    .+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~-----~lgl~~~~~~~-~~~LS~--Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~  181 (648)
T PRK10535        110 PAVYAGLERKQRLLRAQELLQ-----RLGLEDRVEYQ-PSQLSG--GQQQRVSIARALMNGGQVILADEPTGALDSHSGE  181 (648)
T ss_pred             HHHHcCCCHHHHHHHHHHHHH-----HCCChhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence                           111111     11112211111 123333  666666666665                    23


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      .+..+...+++.+.|+|+++|..+.+. .++.......|+..
T Consensus       182 ~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~  222 (648)
T PRK10535        182 EVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV  222 (648)
T ss_pred             HHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE
Confidence            333333334456899999999987553 34433344444444

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.51  E-value=2.3e-06  Score=72.72  Aligned_cols=125  Identities=26%  Similarity=0.336  Sum_probs=70.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA  221 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~  221 (440)
                      ++..+.|+||||+||||++..++..+......+++++.+........... ... ................+....+...
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   78 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-LII-VGGKKASGSGELRLRLALALARKLK   78 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-hhh-hhccCCCCCHHHHHHHHHHHHHhcC
Confidence            36789999999999999977776666655557999998876554433221 000 0000111222223333333344445


Q ss_pred             cceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          222 IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       222 ~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                      +.++++|.+..+.......         ..  ................+..+|++++.
T Consensus        79 ~~viiiDei~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       79 PDVLILDEITSLLDAEQEA---------LL--LLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCEEEEECCcccCCHHHHH---------HH--HhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            7999999999887421110         00  00000223344445677888888875

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF13479 AAA_24: AAA domain

Probab=98.50  E-value=9.9e-07  Score=83.63  Aligned_cols=125  Identities=25%  Similarity=0.262  Sum_probs=75.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHh-cC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCR-SG  220 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~-~~  220 (440)
                      +-.+.|+|+||+||||||..+        .+++||+.|...... ...       +....+..+.+++.+.+..+.. ..
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~-------~~~~i~i~s~~~~~~~~~~l~~~~~   67 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLD-------DGDVIPITSWEDFLEALDELEEDEA   67 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhc-------CCCeeCcCCHHHHHHHHHHHHhccC
Confidence            346899999999999997665        689999999874432 111       1222333477777776665432 35


Q ss_pred             CcceEEEecccccCCc--hhhc-------ccchhhhHHHHHHHHHHHHHHHHH-HHHhcCCEEEEEeccccc
Q 013567          221 AIDLICVDSVSALTPR--AEIE-------GEIGMQQIGLQARLMSQALRKMSG-NASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~~--~el~-------~~~g~~q~~~~ar~l~~~l~~L~~-lak~~~~tVI~inhl~~~  282 (440)
                      ..+.||||++..+...  ....       ...+......-...+.+.+..+.. +.+..+..||+|.|....
T Consensus        68 ~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~  139 (213)
T PF13479_consen   68 DYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEE  139 (213)
T ss_pred             CCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEE
Confidence            7899999999886421  1111       000110001112233444444444 455689999999998754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.50  E-value=4e-07  Score=99.81  Aligned_cols=41  Identities=17%  Similarity=0.336  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      -|++|++++|+|||||||||| ++++++...++.|.++++..
T Consensus        25 ~i~~Ge~v~LvG~NGsGKSTL-LriiaG~~~p~~G~I~~~~~   65 (635)
T PRK11147         25 HIEDNERVCLVGRNGAGKSTL-MKILNGEVLLDDGRIIYEQD   65 (635)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCeEEEeCCC
Confidence            578999999999999999999 99999999998898888753

>PLN03130 ABC transporter C family member; Provisional

Probab=98.50  E-value=4.3e-07  Score=108.67  Aligned_cols=159  Identities=18%  Similarity=0.227  Sum_probs=96.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC-----------CC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ-----------PD  204 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~-----------~~  204 (440)
                      -|++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+-   .+++++++.+++..+++           ..
T Consensus      1261 ~I~~GekVaIVGrSGSGKSTL-l~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~ 1339 (1622)
T PLN03130       1261 EISPSEKVGIVGRTGAGKSSM-LNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH 1339 (1622)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCC
Confidence            589999999999999999999 9999999999999999999875433   36678898887655433           22


Q ss_pred             CHHHHHHHHHHH-----HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHH-----------------HHHHHH
Q 013567          205 NGEMALEIADRM-----CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS-----------------QALRKM  262 (440)
Q Consensus       205 ~~ee~l~~i~~l-----~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~-----------------~~l~~L  262 (440)
                      +.+++.+.++..     +.+..-   -+|+.-.-. ...+++  |++|+...||++-                 +.=..+
T Consensus      1340 tdeei~~Al~~a~l~~~I~~lp~---GLdt~Vge~-G~nLSg--GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I 1413 (1622)
T PLN03130       1340 NDADLWESLERAHLKDVIRRNSL---GLDAEVSEA-GENFSV--GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413 (1622)
T ss_pred             CHHHHHHHHHHcCcHHHHHhCcc---ccCccccCC-CCCCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence            333443333321     111000   011111000 122333  7777777777761                 111112


Q ss_pred             HHHHHh--cCCEEEEEeccccccccccCCceeecccceeeeeceE
Q 013567          263 SGNASK--AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASV  305 (440)
Q Consensus       263 ~~lak~--~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~  305 (440)
                      .+.+++  .++|||+|+|-.+.+.. ++...+...|+..++..+.
T Consensus      1414 q~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130       1414 QKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred             HHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHH
Confidence            222222  47999999998765542 4555556667666655443

>PLN03232 ABC transporter C family member; Provisional

Probab=98.48  E-value=5.8e-07  Score=107.12  Aligned_cols=62  Identities=15%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+-   .+.+++++.+++..++
T Consensus      1258 ~I~~GekvaIVG~SGSGKSTL-~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF 1322 (1495)
T PLN03232       1258 FVSPSEKVGVVGRTGAGKSSM-LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322 (1495)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeee
Confidence            478999999999999999999 9999999999999999999765432   3677889888776554

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=6.5e-07  Score=93.55  Aligned_cols=132  Identities=23%  Similarity=0.331  Sum_probs=87.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccccceeecCC-----------
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLIVCQP-----------  203 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~i~~~-----------  203 (440)
                      .-||+|+-++|+|+|||||||+ ++++..... ..|.++||+.+...-.   +++.+|+.||+-.++..           
T Consensus       373 f~I~kGekVaIvG~nGsGKSTi-lr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~  450 (591)
T KOG0057|consen  373 FTIPKGEKVAIVGSNGSGKSTI-LRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP  450 (591)
T ss_pred             EEecCCCEEEEECCCCCCHHHH-HHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC
Confidence            4589999999999999999999 999999998 7899999998754432   56778999976544322           


Q ss_pred             -CCHHHHHHHHHHHHhcCCcceEEEecccccC-------Cc--hhhcccchhhhHHHHHHHH------------------
Q 013567          204 -DNGEMALEIADRMCRSGAIDLICVDSVSALT-------PR--AEIEGEIGMQQIGLQARLM------------------  255 (440)
Q Consensus       204 -~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~-------~~--~el~~~~g~~q~~~~ar~l------------------  255 (440)
                       .+.+++++.+++.    +.    =|.+..+.       ..  ..++|  |++|+...+|++                  
T Consensus       451 sas~eeV~e~~k~a----~~----hd~i~~l~~GY~T~VGerG~~LSG--GekQrvslaRa~lKda~Il~~DEaTS~LD~  520 (591)
T KOG0057|consen  451 SASDEEVVEACKRA----GL----HDVISRLPDGYQTLVGERGLMLSG--GEKQRVSLARAFLKDAPILLLDEATSALDS  520 (591)
T ss_pred             CcCHHHHHHHHHHc----Cc----HHHHHhccccchhhHhhccccccc--chHHHHHHHHHHhcCCCeEEecCcccccch
Confidence             2345565555432    11    12222221       10  12233  677777777765                  


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                         .++++.+..  ...+.|+|+|-|..+-+
T Consensus       521 ~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll  549 (591)
T KOG0057|consen  521 ETEREILDMIMD--VMSGRTVIMIVHRLDLL  549 (591)
T ss_pred             hhHHHHHHHHHH--hcCCCeEEEEEecchhH
Confidence               234444433  34688999999987644

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.46  E-value=4.9e-07  Score=107.89  Aligned_cols=62  Identities=13%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+-   .+++++++.+++..++
T Consensus      1308 ~I~~GekiaIVGrTGsGKSTL-~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF 1372 (1522)
T TIGR00957      1308 TIHGGEKVGIVGRTGAGKSSL-TLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF 1372 (1522)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc
Confidence            478999999999999999999 8999999999999999999875433   3677889888776554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.46  E-value=3.9e-07  Score=107.75  Aligned_cols=77  Identities=23%  Similarity=0.363  Sum_probs=56.2

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      |+.+ .+-+++|++++|.||||+||||| ++++++...   +..|.+++++.... ..+.+.+|+.+++..+....++.+
T Consensus       779 L~~v-s~~i~~Ge~~aI~G~sGaGKSTL-L~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E  855 (1394)
T TIGR00956       779 LNNV-DGWVKPGTLTALMGASGAGKTTL-LNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRE  855 (1394)
T ss_pred             eeCC-EEEEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHH
Confidence            4443 27799999999999999999999 999999876   45688999987643 234566788776544444445555


Q ss_pred             HHH
Q 013567          209 ALE  211 (440)
Q Consensus       209 ~l~  211 (440)
                      .+.
T Consensus       856 ~L~  858 (1394)
T TIGR00956       856 SLR  858 (1394)
T ss_pred             HHH
Confidence            443

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.46  E-value=5.5e-07  Score=106.74  Aligned_cols=62  Identities=16%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------------------------------------------------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------------------------------------------------  170 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------------------------------------------------  170 (440)
                      =+++|+.++|+||+||||||| ++++.++..+                                                
T Consensus      1190 ~i~~G~~vAIVG~SGsGKSTl-~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 (1466)
T PTZ00265       1190 SCDSKKTTAIVGETGSGKSTV-MSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGE 1268 (1466)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999 9999999887                                                


Q ss_pred             ------CCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          171 ------GGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       171 ------~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                            ..|.+++|+.+..+-   .+.+.+++.+++.+++
T Consensus      1269 ~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265       1269 DSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF 1308 (1466)
T ss_pred             ccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc
Confidence                  588999998865432   3667789888765544

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.8e-06  Score=78.36  Aligned_cols=136  Identities=24%  Similarity=0.225  Sum_probs=80.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC-CCCChh-------h----hhhhcccccce------eec
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE-HAFDPS-------Y----SKALGVDVENL------IVC  201 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E-~~~~~~-------~----a~~lGv~~~~l------~i~  201 (440)
                      +.||++.+|+|.+||||||| |.++..-+.++.+.+-.... ..+...       +    .-.+|+.-+|.      .+.
T Consensus        29 l~PGeVLgiVGESGSGKtTL-L~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VS  107 (258)
T COG4107          29 LYPGEVLGIVGESGSGKTTL-LKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVS  107 (258)
T ss_pred             ecCCcEEEEEecCCCcHHhH-HHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeec
Confidence            67999999999999999999 89888888777665544433 222111       1    11245544332      121


Q ss_pred             CCCC-HH-----------HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          202 QPDN-GE-----------MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       202 ~~~~-~e-----------e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                      ...+ .|           ++...+..++++-.++.--||.....+     ++  |++|+-.++|-+              
T Consensus       108 AG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtF-----SG--GMqQRLQiARnLVt~PrLvfMDEPTG  180 (258)
T COG4107         108 AGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTF-----SG--GMQQRLQIARNLVTRPRLVFMDEPTG  180 (258)
T ss_pred             cCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccccc-----ch--HHHHHHHHHHHhccCCceEEecCCCC
Confidence            1111 11           222233334444455555555543333     33  555555555543              


Q ss_pred             -------HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          256 -------SQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       256 -------~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                             ++.+.-|..+.++.+.++++++|.....
T Consensus       181 GLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va  215 (258)
T COG4107         181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA  215 (258)
T ss_pred             CcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH
Confidence                   4556667778889999999999986543

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.44  E-value=5.3e-07  Score=90.92  Aligned_cols=124  Identities=15%  Similarity=0.193  Sum_probs=81.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccccceeecCC----C---CH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLIVCQP----D---NG--  206 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~i~~~----~---~~--  206 (440)
                      -|.+|+++-|+|.|||||||| +.++.++.+|..|-+++|++......   |.+-+.-.+.++++++.    .   +.  
T Consensus       345 ~ikrGelvFliG~NGsGKST~-~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~  423 (546)
T COG4615         345 TIKRGELVFLIGGNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQL  423 (546)
T ss_pred             EEecCcEEEEECCCCCcHHHH-HHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHH
Confidence            478999999999999999999 78999999999999999998654432   44444444444333221    0   11  


Q ss_pred             -HHH-----------------------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHH
Q 013567          207 -EMA-----------------------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS  256 (440)
Q Consensus       207 -ee~-----------------------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~  256 (440)
                       +.-                             +..+-.+++  .-+++|+|..++=-.            . .-.   +
T Consensus       424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQD------------P-aFR---R  485 (546)
T COG4615         424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQD------------P-AFR---R  485 (546)
T ss_pred             HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCC------------h-HHH---H
Confidence             111                             111122222  345788888765321            0 111   3


Q ss_pred             HHHHHHHHHHHhcCCEEEEEecccc
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      .+-..+...+|+.|.||+.|+|+-.
T Consensus       486 ~FY~~lLp~LK~qGKTI~aIsHDd~  510 (546)
T COG4615         486 EFYQVLLPLLKEQGKTIFAISHDDH  510 (546)
T ss_pred             HHHHHHhHHHHHhCCeEEEEecCch
Confidence            4456678889999999999999854

>PLN03073 ABC transporter F family; Provisional

Probab=98.43  E-value=5e-07  Score=100.06  Aligned_cols=40  Identities=23%  Similarity=0.416  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -|++|++++|+|||||||||| ++++.+...+..|.++++.
T Consensus       531 ~i~~Ge~i~LvG~NGsGKSTL-Lk~L~Gll~p~~G~I~~~~  570 (718)
T PLN03073        531 GIDLDSRIAMVGPNGIGKSTI-LKLISGELQPSSGTVFRSA  570 (718)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCceEEECC
Confidence            578999999999999999999 9999999988888777653

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1e-06  Score=92.07  Aligned_cols=61  Identities=21%  Similarity=0.335  Sum_probs=49.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---Chhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~~~l~i  200 (440)
                      -+.+|+-+.|.|++||||||| +|++.+...++.|.+-+++.+..   ++.+.+.+++..++.++
T Consensus       360 ~l~~GEkvAIlG~SGsGKSTl-lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl  423 (573)
T COG4987         360 TLAQGEKVAILGRSGSGKSTL-LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL  423 (573)
T ss_pred             eecCCCeEEEECCCCCCHHHH-HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence            578999999999999999999 99999999999999999876543   23367777777654443

>PTZ00243 ABC transporter; Provisional

Probab=98.42  E-value=8.6e-07  Score=105.86  Aligned_cols=63  Identities=17%  Similarity=0.257  Sum_probs=53.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~  202 (440)
                      =|++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+-   .+.+.+++.+++..+++
T Consensus      1332 ~I~~GekVaIVGrTGSGKSTL-l~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243       1332 RIAPREKVGIVGRTGSGKSTL-LLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence            378999999999999999999 9999999999999999999865432   36778899887766543

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.41  E-value=1.1e-06  Score=79.51  Aligned_cols=135  Identities=23%  Similarity=0.231  Sum_probs=90.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-----------hhhhhhcccccceeecCCCC--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-----------SYSKALGVDVENLIVCQPDN--  205 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-----------~~a~~lGv~~~~l~i~~~~~--  205 (440)
                      -+..|+.+.+.||+|+||||| |+++++...+++|.+++-.++..-.           .+.+.+|+..+-+.+++..+  
T Consensus        33 sV~aGECvvL~G~SG~GKStl-lr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL  111 (235)
T COG4778          33 SVNAGECVVLHGPSGSGKSTL-LRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL  111 (235)
T ss_pred             EecCccEEEeeCCCCCcHHHH-HHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence            467899999999999999999 9999999999999999977654322           13456788776665544332  


Q ss_pred             -------------HHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          206 -------------GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       206 -------------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                                   .+.....+..++.+-++    =.-+-.+.| ..++|  |++|+.+++|-+                 
T Consensus       112 dVvaePll~~gv~~~~a~~~a~~Ll~rLnl----perLW~LaP-aTFSG--GEqQRVNIaRgfivd~pILLLDEPTasLD  184 (235)
T COG4778         112 DVVAEPLLARGVPREVARAKAADLLTRLNL----PERLWSLAP-ATFSG--GEQQRVNIARGFIVDYPILLLDEPTASLD  184 (235)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----CHHHhcCCC-cccCC--chheehhhhhhhhccCceEEecCCccccc
Confidence                         22233334444332221    112223332 55555  666777776654                 


Q ss_pred             ---HHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          256 ---SQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       256 ---~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                         ++..-.|.+-+|..|+++|-|=|+.+
T Consensus       185 a~Nr~vVveli~e~Ka~GaAlvGIFHDee  213 (235)
T COG4778         185 ATNRAVVVELIREAKARGAALVGIFHDEE  213 (235)
T ss_pred             ccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence               45677788889999999999999865

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.40  E-value=1e-06  Score=80.67  Aligned_cols=121  Identities=12%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccc----ccceeecC-CCCHHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD----VENLIVCQ-PDNGEMALEIADRMC  217 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~----~~~l~i~~-~~~~ee~l~~i~~l~  217 (440)
                      +.++.|.|+|||||||+|.+++...   +.+++|+.+....+....+++...    ++.+.... +....++   +....
T Consensus         1 ~~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~---i~~~~   74 (170)
T PRK05800          1 GMLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAEL---LRADA   74 (170)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHH---HHhhc
Confidence            3578999999999999999887653   456899998777776654443211    22222221 2232222   22211


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                        .+.++|+||+++.+.. ..+..+.        ...+...+..+...+++.++|+|+|+...
T Consensus        75 --~~~~~VlID~Lt~~~~-n~l~~~~--------~~~~~~~l~~li~~L~~~~~tvVlVs~Ev  126 (170)
T PRK05800         75 --APGRCVLVDCLTTWVT-NLLFEEG--------EEAIAAEIDALLAALQQLPAKIILVTNEV  126 (170)
T ss_pred             --CCCCEEEehhHHHHHH-HHhcccc--------hHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence              2356899999999863 2221100        01123445666777778898888887543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.39  E-value=1.3e-06  Score=75.31  Aligned_cols=114  Identities=18%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMAL  210 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l  210 (440)
                      +.+.++.|+|++|+|||+++.+++......     ...++|++........     ++..++.....     ..+..++.
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~   76 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR   76 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence            456789999999999999988888776543     5678888765544332     34444444333     45677777


Q ss_pred             HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          211 EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       211 ~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                      +.+.+.+......+++||.+..+..                    ...+..|+.++.+.+++||++.+.
T Consensus        77 ~~~~~~l~~~~~~~lviDe~~~l~~--------------------~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   77 SLLIDALDRRRVVLLVIDEADHLFS--------------------DEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHHCTEEEEEEETTHHHHT--------------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HHHHHHHHhcCCeEEEEeChHhcCC--------------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence            7777777777778999999877520                    123444455566889999998775

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.38  E-value=2.4e-07  Score=80.78  Aligned_cols=68  Identities=25%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      +++|++++|+|+||+||||| ++++.+...+..|.++++......   ..+.+.+++.+++..+....++.+
T Consensus         8 i~~g~~~~i~G~nGsGKStL-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~   78 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTL-LKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE   78 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHH-HHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred             EcCCCEEEEEccCCCccccc-eeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            67999999999999999999 999999999999999999876665   235667788777766666665544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.7e-06  Score=80.43  Aligned_cols=47  Identities=30%  Similarity=0.491  Sum_probs=38.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPS  186 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~  186 (440)
                      -+++|++++|.|||||||||| ..++.+.-  +...|-+.|++++..+..
T Consensus        26 ~v~~GEvhaiMGPNGsGKSTL-a~~i~G~p~Y~Vt~G~I~~~GedI~~l~   74 (251)
T COG0396          26 TVKEGEVHAIMGPNGSGKSTL-AYTIMGHPKYEVTEGEILFDGEDILELS   74 (251)
T ss_pred             eEcCCcEEEEECCCCCCHHHH-HHHHhCCCCceEecceEEECCcccccCC
Confidence            368999999999999999999 55666654  467899999999876653

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.33  E-value=3.4e-06  Score=95.78  Aligned_cols=60  Identities=20%  Similarity=0.385  Sum_probs=51.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhccccccee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLI  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~  199 (440)
                      -+++|+.++|+||+||||||. .+++.+...+..|.++||+.+..+..   +++++|+..++..
T Consensus      1012 ~i~~GqTvALVG~SGsGKSTv-I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTV-ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred             EecCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch
Confidence            478999999999999999999 99999999999999999988765543   5677887765443

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.32  E-value=1.6e-06  Score=103.31  Aligned_cols=62  Identities=24%  Similarity=0.383  Sum_probs=50.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~  202 (440)
                      =|++|+.++|+|++||||||| ++++.++.. ..|.++||+.+..+-   .+.+++++.+++..+++
T Consensus      1241 ~I~~GekvaIvGrSGsGKSTL-l~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271      1241 SVEGGQRVGLLGRTGSGKSTL-LSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS 1305 (1490)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCc
Confidence            478999999999999999999 888888876 689999999875432   36678888887766553

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.31  E-value=5.7e-06  Score=77.64  Aligned_cols=57  Identities=32%  Similarity=0.451  Sum_probs=47.2

Q ss_pred             CcHHHHHHhcC---CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh
Q 013567          128 GCLTLDLALGG---GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP  185 (440)
Q Consensus       128 Gi~~LD~~LgG---Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~  185 (440)
                      |.+.=+.+|.|   -|+.|+++.|.|.||+||||| ++.+++...+++|-++|++.+....
T Consensus        14 g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTl-ln~iaG~l~~t~G~I~Idg~dVtk~   73 (263)
T COG1101          14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTL-LNAIAGDLKPTSGQILIDGVDVTKK   73 (263)
T ss_pred             CChhHHHHHhcCceeecCCceEEEEcCCCccHHHH-HHHhhCccccCCceEEECceecccC
Confidence            44444455532   589999999999999999999 9999999999999999999876544

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.30  E-value=2.3e-06  Score=88.29  Aligned_cols=70  Identities=19%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             ccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccc
Q 013567          126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVEN  197 (440)
Q Consensus       126 ~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~  197 (440)
                      .+|-|-|..+- =-+++|+.++++||+|+||||+ ++++.+......|++.||+.+...-   .+.+.+|+.+++
T Consensus       548 ~p~k~vl~dis-F~v~pGktvAlVG~SGaGKSTi-mRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQD  620 (790)
T KOG0056|consen  548 DPGKPVLSDIS-FTVQPGKTVALVGPSGAGKSTI-MRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQD  620 (790)
T ss_pred             CCCCceeecce-EEecCCcEEEEECCCCCchhHH-HHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence            35555554432 3478999999999999999999 9999999999999999999876543   267789998864

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.30  E-value=6.5e-06  Score=75.44  Aligned_cols=55  Identities=24%  Similarity=0.329  Sum_probs=44.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDV  195 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~  195 (440)
                      +..|+..+|.|.|||||||| .++++++..|.+|-+.|+.+.-....   +++.+.+.+
T Consensus        36 L~~~QTlaiIG~NGSGKSTL-akMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiF   93 (267)
T COG4167          36 LREGQTLAIIGENGSGKSTL-AKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIF   93 (267)
T ss_pred             ecCCcEEEEEccCCCcHhHH-HHHHhcccCCCCceEEECCccccccchHhhhhheeeee
Confidence            56799999999999999999 78999999999999999988654333   455555444

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.28  E-value=7e-06  Score=77.07  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ..|+++.|+||||+||||| ++.+.+..
T Consensus        23 ~~g~~~~ltGpNg~GKSTl-lr~i~~~~   49 (199)
T cd03283          23 EKKNGILITGSNMSGKSTF-LRTIGVNV   49 (199)
T ss_pred             cCCcEEEEECCCCCChHHH-HHHHHHHH
Confidence            3479999999999999999 77776554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.27  E-value=6e-06  Score=88.21  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+.+|+-++|+|+||+||||| |+++++...+..|.+....
T Consensus        25 ~~~~G~riGLvG~NGaGKSTL-LkilaG~~~~~~G~i~~~~   64 (530)
T COG0488          25 TLNPGERIGLVGRNGAGKSTL-LKILAGELEPDSGEVTRPK   64 (530)
T ss_pred             eeCCCCEEEEECCCCCCHHHH-HHHHcCCCcCCCCeEeecC
Confidence            578999999999999999999 9999999887766655543

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=98.27  E-value=2e-06  Score=97.54  Aligned_cols=145  Identities=17%  Similarity=0.173  Sum_probs=102.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALEIA  213 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~~i  213 (440)
                      -.+++|++.++.|+||+||||+ ++++.+..++.+|.+++.+......    ...+.+|+-++.-.+.+..+..|.+...
T Consensus       586 ~~V~~gecfgLLG~NGAGKtT~-f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~  664 (885)
T KOG0059|consen  586 FAVPPGECFGLLGVNGAGKTTT-FKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFY  664 (885)
T ss_pred             EEecCCceEEEecCCCCCchhh-HHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHH
Confidence            6899999999999999999999 9999999999999999976654321    2567899998876666666655543321


Q ss_pred             H---------------HHHh-----------------------------cCCcceEEEecccccCCchhhcccchhhhHH
Q 013567          214 D---------------RMCR-----------------------------SGAIDLICVDSVSALTPRAEIEGEIGMQQIG  249 (440)
Q Consensus       214 ~---------------~l~~-----------------------------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~  249 (440)
                      .               .+++                             -+.+.+|.+|..++-..+             
T Consensus       665 arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP-------------  731 (885)
T KOG0059|consen  665 ARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDP-------------  731 (885)
T ss_pred             HHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCH-------------
Confidence            1               1110                             134678888875443320             


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                       .   -++.+..+..-+++.+..||+++|.+++-..+|++......|+..-
T Consensus       732 -~---arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c  778 (885)
T KOG0059|consen  732 -K---ARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC  778 (885)
T ss_pred             -H---HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE
Confidence             0   1345666666667766699999999998877787766665555543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.25  E-value=9e-06  Score=76.19  Aligned_cols=28  Identities=39%  Similarity=0.717  Sum_probs=24.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +++| +++|+||||+||||| ++.+..+..
T Consensus        20 ~~~g-~~~i~G~nGsGKStl-l~al~~l~~   47 (197)
T cd03278          20 FPPG-LTAIVGPNGSGKSNI-IDAIRWVLG   47 (197)
T ss_pred             cCCC-cEEEECCCCCCHHHH-HHHHHHHhc
Confidence            5678 999999999999999 888887764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.24  E-value=2.4e-06  Score=86.59  Aligned_cols=166  Identities=18%  Similarity=0.247  Sum_probs=107.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCcEEEEcCCCCCChh-------hhhhhcccccceee-cCCC-C
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK----LGGNAMLVDAEHAFDPS-------YSKALGVDVENLIV-CQPD-N  205 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~----~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i-~~~~-~  205 (440)
                      -+.+|+.++|+|.+|||||..|+.++.-+..    ..++.+.|++++.....       +-.++++.+++... ..|. +
T Consensus        32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t  111 (534)
T COG4172          32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT  111 (534)
T ss_pred             eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence            3679999999999999999998777655443    34678888888754331       22345665554322 1111 1


Q ss_pred             -HHHHHH---------------HHHHHHhcCCcceEEEecccc---cCCchhhcccchhhhHHHHHHHH-----------
Q 013567          206 -GEMALE---------------IADRMCRSGAIDLICVDSVSA---LTPRAEIEGEIGMQQIGLQARLM-----------  255 (440)
Q Consensus       206 -~ee~l~---------------~i~~l~~~~~~~lvVIDsl~~---l~~~~el~~~~g~~q~~~~ar~l-----------  255 (440)
                       ..++.+               .+.+++     +.|-|.....   -+| .+++|  |++|+..++.++           
T Consensus       112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL-----~~VgI~~p~~rl~~yP-HeLSG--GqRQRVMIAMALan~P~lLIADE  183 (534)
T COG4172         112 IGKQLAEVLRLHRGLSRAAARARALELL-----ELVGIPEPEKRLDAYP-HELSG--GQRQRVMIAMALANEPDLLIADE  183 (534)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHH-----HHcCCCchhhhhhhCC-cccCc--chhhHHHHHHHHcCCCCeEeecC
Confidence             122222               222222     2233332211   122 56666  778887777766           


Q ss_pred             ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeec
Q 013567          256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRST  312 (440)
Q Consensus       256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~  312 (440)
                                .+++.-|+.+-++.|..++||+|+-..+..+.+...++.-|..++.....+++-.+.
T Consensus       184 PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~Pq  250 (534)
T COG4172         184 PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ  250 (534)
T ss_pred             CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCC
Confidence                      578888899999999999999999877766666677777888888877777766543

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.17  E-value=1.5e-05  Score=92.45  Aligned_cols=69  Identities=22%  Similarity=0.353  Sum_probs=56.5

Q ss_pred             HHHHHhcC---CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567          131 TLDLALGG---GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV  200 (440)
Q Consensus       131 ~LD~~LgG---Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i  200 (440)
                      .|+.+|-|   =|++|+-++|+|+.||||||| .+.+.++..+.+|.+.||+-+..+-   .+++++++.||+..+
T Consensus      1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL-~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSL-ILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred             CCcchhcCceEEEcCCceEEEeCCCCCCHHHH-HHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence            45666632   378999999999999999999 8888899988999999999887654   367888888876554

>PLN03073 ABC transporter F family; Provisional

Probab=98.17  E-value=4.1e-06  Score=92.93  Aligned_cols=40  Identities=28%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcC-CcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ---KLG-GNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~---~~~-~~vv~id~  179 (440)
                      -|++|+.++|+|+||+||||| ++++++..   .+. +.+.|+.-
T Consensus       199 ~i~~Ge~~gLvG~NGsGKSTL-Lr~l~g~~~~g~p~~g~I~~~~Q  242 (718)
T PLN03073        199 TLAFGRHYGLVGRNGTGKTTF-LRYMAMHAIDGIPKNCQILHVEQ  242 (718)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCCCCEEEEEec
Confidence            489999999999999999999 99998642   233 34445543

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.16  E-value=1e-05  Score=84.58  Aligned_cols=109  Identities=25%  Similarity=0.351  Sum_probs=71.6

Q ss_pred             cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-h-hhhhccc-cc-ce
Q 013567          123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-Y-SKALGVD-VE-NL  198 (440)
Q Consensus       123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~-a~~lGv~-~~-~l  198 (440)
                      +.+.||+..+|.++  =+.+|+.+.|.|++|+||||| ++++.+...++.+++.+.+|...+-. + .+.++-. .. .+
T Consensus       140 ~~l~tg~~vid~l~--~i~~Gq~i~I~G~sG~GKStL-l~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v  216 (438)
T PRK07721        140 EPMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTL-MGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSI  216 (438)
T ss_pred             cccccchhhhheee--eecCCcEEEEECCCCCCHHHH-HHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeE
Confidence            36889999999985  588999999999999999999 78898888888888888777654322 1 1112111 11 22


Q ss_pred             eec-CC-C-CHH------HHHHHHHHHHhcCCcceEEEecccccC
Q 013567          199 IVC-QP-D-NGE------MALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       199 ~i~-~~-~-~~e------e~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      .+. .. . ...      -.+.+++.+..++.--++++||++.+.
T Consensus       217 ~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A  261 (438)
T PRK07721        217 VVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVA  261 (438)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHH
Confidence            222 11 1 122      233445555455544577899998775

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.15  E-value=7.9e-06  Score=97.49  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|++++|.||+||||||| ++++.+...+..|.+++++
T Consensus       448 ~i~~G~~~~I~G~~GsGKSTL-l~~l~G~~~~~~G~i~~~g  487 (1490)
T TIGR01271       448 KLEKGQLLAVAGSTGSGKSSL-LMMIMGELEPSEGKIKHSG  487 (1490)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECC
Confidence            478999999999999999999 9999999998888888875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.13  E-value=1.5e-05  Score=74.80  Aligned_cols=25  Identities=40%  Similarity=0.672  Sum_probs=21.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +|++++|+||||+||||| ++.+...
T Consensus        28 ~~~~~~l~G~Ng~GKStl-l~~i~~~   52 (202)
T cd03243          28 SGRLLLITGPNMGGKSTY-LRSIGLA   52 (202)
T ss_pred             CCeEEEEECCCCCccHHH-HHHHHHH
Confidence            359999999999999999 7777644

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins

Probab=98.13  E-value=4.9e-05  Score=77.03  Aligned_cols=133  Identities=20%  Similarity=0.263  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhh----hcccccc--------ee-------ec
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA----LGVDVEN--------LI-------VC  201 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~----lGv~~~~--------l~-------i~  201 (440)
                      ..|+...|-|.||+|||||++.++..+.. ...++|+++.-..+..+..-    -.++..+        +.       ..
T Consensus         8 ~~G~TLLIKG~PGTGKTtfaLelL~~l~~-~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~~~vp~   86 (484)
T PF07088_consen    8 EPGQTLLIKGEPGTGKTTFALELLNSLKD-HGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELPLDKDVPF   86 (484)
T ss_pred             CCCcEEEEecCCCCCceeeehhhHHHHhc-cCCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhccccccCcc
Confidence            57999999999999999999999887764 56789999874433332111    1122111        11       11


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          202 QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       202 ~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      .....+.+.+.++++-......+|++||+-++..  .+..+.+..      ..+-.....|..+|++.++-+|++++-.+
T Consensus        87 ~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiie--yla~~~~~~------ed~e~l~~dLv~lard~g~~LIlVsEsa~  158 (484)
T PF07088_consen   87 ERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIE--YLAEEHDEP------EDIETLTNDLVELARDMGINLILVSESAE  158 (484)
T ss_pred             cccCHHHHHHHHHHhhhcccCcEEEEecHHHHHH--HhhhhhcCc------HHHHHHHHHHHHHHhhcCceEEEEEecCC
Confidence            1233556666666543345667999999766641  111111111      11445566777888999999999988765


Q ss_pred             c
Q 013567          282 K  282 (440)
Q Consensus       282 ~  282 (440)
                      .
T Consensus       159 ~  159 (484)
T PF07088_consen  159 N  159 (484)
T ss_pred             C
Confidence            3

GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.13  E-value=4.1e-06  Score=77.48  Aligned_cols=51  Identities=25%  Similarity=0.406  Sum_probs=43.5

Q ss_pred             CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      |+..|+.+. =-+.+|++-.|.||||+||||+ +.++.+-.++..|.+||++.
T Consensus        17 GF~Aln~ls-~~v~~Gelr~lIGpNGAGKTT~-mD~ItGKtrp~~G~v~f~g~   67 (249)
T COG4674          17 GFKALNDLS-FSVDPGELRVLIGPNGAGKTTL-MDVITGKTRPQEGEVLFDGD   67 (249)
T ss_pred             ceeeeeeeE-EEecCCeEEEEECCCCCCceee-eeeecccCCCCcceEEEcCc
Confidence            555565543 4688999999999999999999 99999999999999999883

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.10  E-value=1.3e-05  Score=78.75  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhcccccceeecCCCCHH--HHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENLIVCQPDNGE--MALEIADRMC  217 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l~i~~~~~~e--e~l~~i~~l~  217 (440)
                      ..+.|.||||+||||| ++.+++...++.+.+++++.....    ..++..++..+++-.....+..+  .-..-+..++
T Consensus       112 ~~~~i~g~~g~GKttl-~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i  190 (270)
T TIGR02858       112 LNTLIISPPQCGKTTL-LRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI  190 (270)
T ss_pred             eEEEEEcCCCCCHHHH-HHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence            5789999999999999 999999999999999998876532    12444444444433221111111  1111234445


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      +...++++++|.+...                       ..+..+...++ .|.+||+++|...
T Consensus       191 ~~~~P~villDE~~~~-----------------------e~~~~l~~~~~-~G~~vI~ttH~~~  230 (270)
T TIGR02858       191 RSMSPDVIVVDEIGRE-----------------------EDVEALLEALH-AGVSIIATAHGRD  230 (270)
T ss_pred             HhCCCCEEEEeCCCcH-----------------------HHHHHHHHHHh-CCCEEEEEechhH
Confidence            5568999999985311                       11122222223 5999999999743

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.09  E-value=1.3e-05  Score=95.78  Aligned_cols=40  Identities=23%  Similarity=0.420  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|++++|+||+||||||| ++++.+...+..|.+++++
T Consensus       660 ~i~~G~~v~IvG~~GsGKSTL-l~~l~g~~~~~~G~i~~~g  699 (1522)
T TIGR00957       660 SIPEGALVAVVGQVGCGKSSL-LSALLAEMDKVEGHVHMKG  699 (1522)
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCccCCcEEEECC
Confidence            478999999999999999999 9999999988888888875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=98.08  E-value=3.3e-05  Score=73.62  Aligned_cols=124  Identities=13%  Similarity=0.033  Sum_probs=69.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh-cCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR-SGA  221 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~-~~~  221 (440)
                      ...+.|+|+||+||||+|.++       ..+.++++.+......... -.++  -+.+-.+.+.+.+.+.+..+-. ...
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~-------~~~~~~~~~d~~~~~l~g~-~~~~--v~~~d~~~~~~~~~d~l~~~~~~~~~   81 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYL-------PGKTLVLSFDMSSKVLIGD-ENVD--IADHDDMPPIQAMVEFYVMQNIQAVK   81 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhc-------CCCCEEEeccccchhccCC-CCCc--eeecCCCCCHHHHHHHHHHHHhcccc
Confidence            467999999999999996554       2457778777643222100 0111  1112234456666666554321 246


Q ss_pred             cceEEEecccccCCchhh-----cccc---hhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          222 IDLICVDSVSALTPRAEI-----EGEI---GMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       222 ~~lvVIDsl~~l~~~~el-----~~~~---g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      ++.||||++..+.. .-+     .+..   ..+..+.    +...+..+...+...+.+||+++|...
T Consensus        82 ydtVVIDsI~~l~~-~~~~~~~r~~k~~~~~~~~yg~----~~~~fl~~l~~L~~~g~nII~tAhe~~  144 (220)
T TIGR01618        82 YDNIVIDNISALQN-LWLENIGRAAKNGQPELQHYQK----LDLWFLDLLTVLKESNKNIYATAWELT  144 (220)
T ss_pred             CCEEEEecHHHHHH-HHHHHHhhhcCCCCcccccHHH----HHHHHHHHHHHHHhCCCcEEEEEeecc
Confidence            89999999988753 111     0000   1111112    233333344444568999999999864

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.06  E-value=2.7e-05  Score=72.96  Aligned_cols=23  Identities=35%  Similarity=0.684  Sum_probs=19.6

Q ss_pred             CC-CEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KG-RIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G-~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      +| +++.|+||||+||||| ++.+.
T Consensus        26 ~~~~~~~ltG~Ng~GKStl-l~~i~   49 (200)
T cd03280          26 ENKRVLVITGPNAGGKTVT-LKTLG   49 (200)
T ss_pred             CCceEEEEECCCCCChHHH-HHHHH
Confidence            44 6899999999999999 66665

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.06  E-value=2.4e-05  Score=76.60  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=23.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      -||.|.++.|+|++|||||||+..++.
T Consensus        17 ~ip~g~~~~vtGvSGsGKStL~~~~l~   43 (261)
T cd03271          17 DIPLGVLTCVTGVSGSGKSSLINDTLY   43 (261)
T ss_pred             eccCCcEEEEECCCCCchHHHHHHHHH
Confidence            489999999999999999999766654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.04  E-value=8.8e-06  Score=75.09  Aligned_cols=79  Identities=23%  Similarity=0.353  Sum_probs=49.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      -+..+.-+.|+|++|+|||.||..++..+...+..|.|++..+-.     ..+-..      ......++.+   ..+. 
T Consensus        43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~-----~~l~~~------~~~~~~~~~~---~~l~-  107 (178)
T PF01695_consen   43 FIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL-----DELKQS------RSDGSYEELL---KRLK-  107 (178)
T ss_dssp             S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH-----HHHHCC------HCCTTHCHHH---HHHH-
T ss_pred             CcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee-----cccccc------ccccchhhhc---Cccc-
Confidence            345678899999999999999999999999989999999764322     221100      1112233333   3332 


Q ss_pred             cCCcceEEEecccccC
Q 013567          219 SGAIDLICVDSVSALT  234 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~  234 (440)
                        .++++|||.+....
T Consensus       108 --~~dlLilDDlG~~~  121 (178)
T PF01695_consen  108 --RVDLLILDDLGYEP  121 (178)
T ss_dssp             --TSSCEEEETCTSS-
T ss_pred             --cccEecccccceee
Confidence              58999999997654

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.03  E-value=3.6e-05  Score=82.33  Aligned_cols=126  Identities=18%  Similarity=0.196  Sum_probs=74.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc---------EEEEcCCCCC-Ch--h---hh--------------
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN---------AMLVDAEHAF-DP--S---YS--------------  188 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~---------vv~id~E~~~-~~--~---~a--------------  188 (440)
                      -.+.+|+-++|+||||+||||| ++++.+...+..|         +.||+-+... ..  .   +.              
T Consensus       343 ~~i~~g~riaiiG~NG~GKSTL-lk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~  421 (530)
T COG0488         343 FRIDRGDRIAIVGPNGAGKSTL-LKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRA  421 (530)
T ss_pred             EEecCCCEEEEECCCCCCHHHH-HHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHH
Confidence            5789999999999999999999 9999877655433         4455433211 00  0   00              


Q ss_pred             --hhhccccccee-ecCCCCHHH-HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567          189 --KALGVDVENLI-VCQPDNGEM-ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG  264 (440)
Q Consensus       189 --~~lGv~~~~l~-i~~~~~~ee-~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~  264 (440)
                        .++++..+... -+...++-| ..-.+..+ --.++.++++|..+....                    ...+..|..
T Consensus       422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~l-l~~~pNvLiLDEPTNhLD--------------------i~s~~aLe~  480 (530)
T COG0488         422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKL-LLQPPNLLLLDEPTNHLD--------------------IESLEALEE  480 (530)
T ss_pred             HHHHcCCChHHHhCchhhcCHhHHHHHHHHHH-hccCCCEEEEcCCCccCC--------------------HHHHHHHHH
Confidence              11111111110 011112222 21222222 234788999999887764                    122344566


Q ss_pred             HHHhcCCEEEEEecccccccc
Q 013567          265 NASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       265 lak~~~~tVI~inhl~~~ig~  285 (440)
                      .+..+.-|||+|+|++.-+..
T Consensus       481 aL~~f~Gtvl~VSHDr~Fl~~  501 (530)
T COG0488         481 ALLDFEGTVLLVSHDRYFLDR  501 (530)
T ss_pred             HHHhCCCeEEEEeCCHHHHHh
Confidence            678889999999999986653

>PTZ00243 ABC transporter; Provisional

Probab=98.01  E-value=1.3e-05  Score=96.01  Aligned_cols=39  Identities=23%  Similarity=0.566  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      =+++|++++|.||+||||||| ++++.+...+..|.+++.
T Consensus       682 ~i~~G~~~~IiG~nGsGKSTL-L~~i~G~~~~~~G~i~~~  720 (1560)
T PTZ00243        682 SVPRGKLTVVLGATGSGKSTL-LQSLLSQFEISEGRVWAE  720 (1560)
T ss_pred             EECCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEEC
Confidence            378999999999999999999 999999988888877763

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=6.3e-05  Score=76.87  Aligned_cols=90  Identities=20%  Similarity=0.246  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----h--hhhhhhcccccceeecCCCCHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----P--SYSKALGVDVENLIVCQPDNGEMALEIA  213 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i  213 (440)
                      +.+|+++.|+||+|+||||++.+++..+...+..+.+++......    +  .+++.+++.+     ....+..++...+
T Consensus       203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al  277 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV  277 (407)
T ss_pred             ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence            567999999999999999999999888777778888988753211    1  1344444422     1234566666656


Q ss_pred             HHHHhcCCcceEEEecccccC
Q 013567          214 DRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       214 ~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      ..+....+.++|+||......
T Consensus       278 ~~l~~~~~~D~VLIDTAGr~~  298 (407)
T PRK12726        278 QYMTYVNCVDHILIDTVGRNY  298 (407)
T ss_pred             HHHHhcCCCCEEEEECCCCCc
Confidence            555433568999999987654

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.97  E-value=4.4e-05  Score=73.35  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      |++++|+||||+||||| +.++..
T Consensus        23 ~~~~~i~GpNGsGKStl-l~ai~~   45 (243)
T cd03272          23 PKHNVVVGRNGSGKSNF-FAAIRF   45 (243)
T ss_pred             CCcEEEECCCCCCHHHH-HHHHHH
Confidence            57999999999999999 777763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.94  E-value=2.8e-05  Score=80.05  Aligned_cols=125  Identities=22%  Similarity=0.313  Sum_probs=74.3

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcE---E-------EEcCC--CCCChhhhhhhc--cccc--ceeec
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA---M-------LVDAE--HAFDPSYSKALG--VDVE--NLIVC  201 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~v---v-------~id~E--~~~~~~~a~~lG--v~~~--~l~i~  201 (440)
                      |.|..|+++++.||||.||||| .+++++..+++++.   +       ||..+  ++..+.+.....  +...  +..+.
T Consensus       362 G~i~~gEvigilGpNgiGKTTF-vk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~  440 (591)
T COG1245         362 GEIYDGEVIGILGPNGIGKTTF-VKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV  440 (591)
T ss_pred             CeeecceEEEEECCCCcchHHH-HHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhc
Confidence            7899999999999999999999 89999999987663   1       22211  111111111111  1111  11233


Q ss_pred             CCCCHHHHH---------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567          202 QPDNGEMAL---------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA  266 (440)
Q Consensus       202 ~~~~~ee~l---------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la  266 (440)
                      .|...+.++               .++..+  ....++.++|..+++.. .        .|+..    .++.+   .+++
T Consensus       441 ~pl~l~~i~e~~v~~LSGGELQRvaIaa~L--~reADlYllDEPSA~LD-v--------EqR~~----vakvI---RR~~  502 (591)
T COG1245         441 KPLNLEDLLERPVDELSGGELQRVAIAAAL--SREADLYLLDEPSAYLD-V--------EQRII----VAKVI---RRFI  502 (591)
T ss_pred             CccchHHHHhcccccCCchhHHHHHHHHHh--ccccCEEEecCchhhcc-H--------HHHHH----HHHHH---HHHH
Confidence            344443332               233333  44688999999888874 1        12222    23333   4456


Q ss_pred             HhcCCEEEEEecccc
Q 013567          267 SKAGCTLIFLNQIRY  281 (440)
Q Consensus       267 k~~~~tVI~inhl~~  281 (440)
                      ...+.|.+++.|.--
T Consensus       503 e~~~kta~vVdHDi~  517 (591)
T COG1245         503 ENNEKTALVVDHDIY  517 (591)
T ss_pred             hhcCceEEEEeccee
Confidence            678899999999854

>PLN03130 ABC transporter C family member; Provisional

Probab=97.94  E-value=3.3e-05  Score=92.81  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-cEEEE
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG-NAMLV  177 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~-~vv~i  177 (440)
                      =+++|++++|+||+||||||| ++++.+...+.. |.+.+
T Consensus       639 ~i~~Ge~vaIvG~sGSGKSTL-l~lLlG~~~~~~GG~I~l  677 (1622)
T PLN03130        639 DVPVGSLVAIVGSTGEGKTSL-ISAMLGELPPRSDASVVI  677 (1622)
T ss_pred             EecCCCEEEEECCCCCCHHHH-HHHHHHhhccCCCceEEE
Confidence            478999999999999999999 899999888776 66664

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=97.94  E-value=4.4e-05  Score=71.87  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ++.|.||||+||||| +..+.
T Consensus        24 ~~~i~G~NGsGKTTL-l~ai~   43 (204)
T cd03240          24 LTLIVGQNGAGKTTI-IEALK   43 (204)
T ss_pred             eEEEECCCCCCHHHH-HHHHH
Confidence            999999999999999 67664

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.93  E-value=5.4e-05  Score=64.79  Aligned_cols=115  Identities=21%  Similarity=0.297  Sum_probs=60.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceE
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLI  225 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lv  225 (440)
                      +.|+||||+|||+++..++ ...  +...+.++.....+.               ........+...+.+......+.++
T Consensus         1 ill~G~~G~GKT~l~~~la-~~l--~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl   62 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALA-QYL--GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVL   62 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHH-HHT--TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEE
T ss_pred             CEEECcCCCCeeHHHHHHH-hhc--ccccccccccccccc---------------cccccccccccccccccccccceee
Confidence            5799999999999954444 443  345666665432111               1111222333344443222237899


Q ss_pred             EEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEeccccccc
Q 013567          226 CVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK-AGCTLIFLNQIRYKIG  284 (440)
Q Consensus       226 VIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~-~~~tVI~inhl~~~ig  284 (440)
                      +||.+..+.+..  .....    ....+.+...+..+...... .++.||++++..+.+.
T Consensus        63 ~iDe~d~l~~~~--~~~~~----~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~  116 (132)
T PF00004_consen   63 FIDEIDKLFPKS--QPSSS----SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID  116 (132)
T ss_dssp             EEETGGGTSHHC--STSSS----HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred             eeccchhccccc--ccccc----cccccccceeeecccccccccccceeEEeeCChhhCC
Confidence            999999998533  11101    11122233333333333332 4578888888766553

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.92  E-value=7.1e-05  Score=71.56  Aligned_cols=26  Identities=38%  Similarity=0.721  Sum_probs=22.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      =+++|++++|+|+||||||||+...+
T Consensus        17 ~i~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270          17 DIPRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             ecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            37899999999999999999964433

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.91  E-value=0.0001  Score=63.18  Aligned_cols=41  Identities=27%  Similarity=0.425  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      .+..+.|.||+|+|||+++..++..+...+..+++++....
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~   58 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL   58 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence            56789999999999999977777777666777888876543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK08181 transposase; Validated

Probab=97.90  E-value=4.1e-05  Score=75.25  Aligned_cols=118  Identities=18%  Similarity=0.257  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS  219 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~  219 (440)
                      +..++-+.|+||+|+|||.|+..++..+...+..++|++..+-.     ..+...      ....+.++.+.   .+   
T Consensus       103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~-----~~l~~a------~~~~~~~~~l~---~l---  165 (269)
T PRK08181        103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV-----QKLQVA------RRELQLESAIA---KL---  165 (269)
T ss_pred             HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHH-----HHHHHH------HhCCcHHHHHH---HH---
Confidence            45778899999999999999888888888888889998764322     111100      01122223222   22   


Q ss_pred             CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc-ccccccccCCce
Q 013567          220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI-RYKIGVYYGNPE  291 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl-~~~ig~~~~~~~  291 (440)
                      ..++++|||.+..... .+           .    -...+..+.....+.+ ++|++++. ...++..++++.
T Consensus       166 ~~~dLLIIDDlg~~~~-~~-----------~----~~~~Lf~lin~R~~~~-s~IiTSN~~~~~w~~~~~D~~  221 (269)
T PRK08181        166 DKFDLLILDDLAYVTK-DQ-----------A----ETSVLFELISARYERR-SILITANQPFGEWNRVFPDPA  221 (269)
T ss_pred             hcCCEEEEeccccccC-CH-----------H----HHHHHHHHHHHHHhCC-CEEEEcCCCHHHHHHhcCCcc
Confidence            2578999999986542 10           0    1223334444333334 55555554 456666665543

>PRK06526 transposase; Provisional

Probab=97.90  E-value=2.4e-05  Score=76.22  Aligned_cols=42  Identities=24%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      -+..+.-+.|+||||+|||+||..++..+...+..++|++..
T Consensus        94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~  135 (254)
T PRK06526         94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA  135 (254)
T ss_pred             hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence            356778899999999999999999988888888888886543

>PRK09183 transposase/IS protein; Provisional

Probab=97.89  E-value=5.1e-05  Score=74.18  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++.|+.+.|+||||+|||+|+..++..+...+..+.|++..
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~  139 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA  139 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence            78899999999999999999877766666777788888754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.88  E-value=0.00015  Score=68.04  Aligned_cols=88  Identities=22%  Similarity=0.360  Sum_probs=56.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHH-HHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMAL-EIADRM  216 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l-~~i~~l  216 (440)
                      .++.++||+|+||||.+.++++.+...+.++.+++.....    ++  .+++.+|+.+...  ....+..++. +.+++.
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~--~~~~~~~~~~~~~l~~~   79 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVA--RTESDPAEIAREALEKF   79 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES--STTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchh--hcchhhHHHHHHHHHHH
Confidence            4789999999999999999999998778888888865321    11  2577777654221  1122333333 344443


Q ss_pred             HhcCCcceEEEecccccC
Q 013567          217 CRSGAIDLICVDSVSALT  234 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~  234 (440)
                       +..+.++|+||+.....
T Consensus        80 -~~~~~D~vlIDT~Gr~~   96 (196)
T PF00448_consen   80 -RKKGYDLVLIDTAGRSP   96 (196)
T ss_dssp             -HHTTSSEEEEEE-SSSS
T ss_pred             -hhcCCCEEEEecCCcch
Confidence             44578999999976543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.87  E-value=1.4e-05  Score=91.21  Aligned_cols=64  Identities=22%  Similarity=0.366  Sum_probs=48.2

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CcEEEEcCCCCCChhhhhhhcccccc
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--GNAMLVDAEHAFDPSYSKALGVDVEN  197 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--~~vv~id~E~~~~~~~a~~lGv~~~~  197 (440)
                      |+.+- |-+.||.+++|.|++|+||||| |+++++-...|  .|-+.|++-...+...+|..|+.-++
T Consensus       807 L~~V~-G~~kPG~LTALMG~SGAGKTTL-LdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~  872 (1391)
T KOG0065|consen  807 LNNVS-GAFKPGVLTALMGESGAGKTTL-LDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQ  872 (1391)
T ss_pred             hhcCc-eEecCCceeehhcCCCCchHHH-HHHHhcCcccceEEeEEEECCeeCchhhhccccceeecc
Confidence            34433 8899999999999999999999 88887654332  46677887654445678888887654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.86  E-value=0.00033  Score=63.74  Aligned_cols=86  Identities=22%  Similarity=0.286  Sum_probs=53.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhcccccceeecCCCCHHHHHH-HHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLIVCQPDNGEMALE-IADRMC  217 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~~~~~~ee~l~-~i~~l~  217 (440)
                      ++.+.|+||+||||++.+++..+.+.+..+++++........      +++..|++..  ....+.+..+++. .+.. .
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~   78 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF--EEGEGKDPVSIAKRAIEH-A   78 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE--ecCCCCCHHHHHHHHHHH-H
Confidence            688999999999999999998888778889999876422111      1223332211  1112233444432 2332 2


Q ss_pred             hcCCcceEEEeccccc
Q 013567          218 RSGAIDLICVDSVSAL  233 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l  233 (440)
                      ...+.++++||.....
T Consensus        79 ~~~~~d~viiDt~g~~   94 (173)
T cd03115          79 REENFDVVIVDTAGRL   94 (173)
T ss_pred             HhCCCCEEEEECcccc
Confidence            3457889999986544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]

Probab=97.85  E-value=0.00014  Score=68.16  Aligned_cols=135  Identities=20%  Similarity=0.138  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChhhh-hhh-----cccc--------------
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPSYS-KAL-----GVDV--------------  195 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~~a-~~l-----Gv~~--------------  195 (440)
                      .|.+++|.||.++|||....|+++...-|      +.-|+|||....++..+. +.+     ..+.              
T Consensus        37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~  116 (293)
T KOG2859|consen   37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQL  116 (293)
T ss_pred             cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHH
Confidence            68999999999999999988888887643      346899999998887521 111     1111              


Q ss_pred             --------cceeecCCCCHHHHHHH---HHHH-HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHH
Q 013567          196 --------ENLIVCQPDNGEMALEI---ADRM-CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS  263 (440)
Q Consensus       196 --------~~l~i~~~~~~ee~l~~---i~~l-~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~  263 (440)
                              .++.+.......+++..   ++.. +...++.++++||+.+++......+  ++. ...+.+.++.....|.
T Consensus       117 eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~--le~-~n~~~~~lr~~~q~Le  193 (293)
T KOG2859|consen  117 EEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKI--LEK-RNSMYRHLRLLQQRLE  193 (293)
T ss_pred             HHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccch--Hhh-hhhHHHHHHHHHHHHH
Confidence                    23334333333333322   2222 3344578999999999987554443  221 1233444555566667


Q ss_pred             HHHHhcCCEEEEEecc
Q 013567          264 GNASKAGCTLIFLNQI  279 (440)
Q Consensus       264 ~lak~~~~tVI~inhl  279 (440)
                      ++++.+-..++.+.+.
T Consensus       194 KL~~d~~lv~~aT~~t  209 (293)
T KOG2859|consen  194 KLCKDAILVGMATVET  209 (293)
T ss_pred             HHHhhheeeeeeehhH
Confidence            7777766666666554

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00013  Score=74.66  Aligned_cols=60  Identities=22%  Similarity=0.476  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhccccccee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLI  199 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~  199 (440)
                      =+|+|+.+.|+|++|+||||+ ++++.+....+.|++.+|+.+..+..   ..+.+|+.+++-.
T Consensus       285 ~i~~g~tvAiVg~SG~gKsTI-~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv  347 (497)
T COG5265         285 TIPLGKTVAIVGESGAGKSTI-LRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV  347 (497)
T ss_pred             cccCccEEEEEeCCCCcHHHH-HHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce
Confidence            479999999999999999999 99999999999999999998765543   5677899887543

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.80  E-value=0.00031  Score=63.50  Aligned_cols=113  Identities=17%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhhhhccc--ccc---eee-cCCCC-HHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSKALGVD--VEN---LIV-CQPDN-GEMALEIAD  214 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~~lGv~--~~~---l~i-~~~~~-~ee~l~~i~  214 (440)
                      +.++.|+||||+|||++ ++.+.-+. ....+... ..+.        +.|..  ...   +.. .+... ..+......
T Consensus        21 ~~~~~i~G~NgsGKS~~-l~~i~~~~~~~~~~~~~-~~~~--------~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~   90 (162)
T cd03227          21 GSLTIITGPNGSGKSTI-LDAIGLALGGAQSATRR-RSGV--------KAGCIVAAVSAELIFTRLQLSGGEKELSALAL   90 (162)
T ss_pred             CCEEEEECCCCCCHHHH-HHHHHHHHHhcchhhhc-cCcc--------cCCCcceeeEEEEehheeeccccHHHHHHHHH
Confidence            47999999999999999 55543332 22212221 0000        01100  000   111 11111 233444444


Q ss_pred             HHHhc--CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567          215 RMCRS--GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       215 ~l~~~--~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~  282 (440)
                      .+...  ..++++++|.+..-....+             .+.+..   .+.....+ ++++|+++|..+.
T Consensus        91 ~L~~~~~~~~~llllDEp~~gld~~~-------------~~~l~~---~l~~~~~~-~~~vii~TH~~~~  143 (162)
T cd03227          91 ILALASLKPRPLYILDEIDRGLDPRD-------------GQALAE---AILEHLVK-GAQVIVITHLPEL  143 (162)
T ss_pred             HHHhcCCCCCCEEEEeCCCCCCCHHH-------------HHHHHH---HHHHHHhc-CCEEEEEcCCHHH
Confidence            44432  2689999999876653111             112333   33444455 8999999998763

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=97.79  E-value=0.00012  Score=74.83  Aligned_cols=128  Identities=23%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--------cCCcEEEEcC---------CC--CCCh-hhhhhhcccccce
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--------LGGNAMLVDA---------EH--AFDP-SYSKALGVDVENL  198 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--------~~~~vv~id~---------E~--~~~~-~~a~~lGv~~~~l  198 (440)
                      -+.+|+++.|.|++|+||||+ ++++.+.+.        +++|.+-+-.         |.  .+.. .+.+.++-++.++
T Consensus       405 ~ikpGdvvaVvGqSGaGKttl-lRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~  483 (593)
T COG2401         405 EIKPGDVVAVVGQSGAGKTTL-LRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDL  483 (593)
T ss_pred             EecCCCeEEEEecCCCCcchH-HHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCch
Confidence            478999999999999999999 999998874        3344433211         10  1110 0112221111110


Q ss_pred             ----------------ee----cCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567          199 ----------------IV----CQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA  258 (440)
Q Consensus       199 ----------------~i----~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~  258 (440)
                                      .+    .+-.+...-...+.+++. .++.++++|-+.+....  +.              ....
T Consensus       484 ~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla-erpn~~~iDEF~AhLD~--~T--------------A~rV  546 (593)
T COG2401         484 NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA-ERPNVLLIDEFAAHLDE--LT--------------AVRV  546 (593)
T ss_pred             hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh-cCCCcEEhhhhhhhcCH--HH--------------HHHH
Confidence                            00    000111111223333333 35789999999888741  11              2356


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccc
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      .+++.+++++.++|+++++|-.+...
T Consensus       547 ArkiselaRe~giTlivvThrpEv~~  572 (593)
T COG2401         547 ARKISELAREAGITLIVVTHRPEVGN  572 (593)
T ss_pred             HHHHHHHHHHhCCeEEEEecCHHHHh
Confidence            77888999999999999999766443

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.78  E-value=0.00011  Score=69.78  Aligned_cols=24  Identities=38%  Similarity=0.624  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ++++|+||||+||||| ++.+....
T Consensus        31 ~~~~l~Gpn~sGKstl-lr~i~~~~   54 (216)
T cd03284          31 QILLITGPNMAGKSTY-LRQVALIA   54 (216)
T ss_pred             eEEEEECCCCCChHHH-HHHHHHHH
Confidence            8999999999999999 77776544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PLN03232 ABC transporter C family member; Provisional

Probab=97.78  E-value=4.8e-05  Score=91.00  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=29.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN  173 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~  173 (440)
                      =+++|++++|+||+||||||| ++++.+...+..|
T Consensus       639 ~i~~Ge~vaIvG~sGSGKSTL-l~lLlG~~~~~~G  672 (1495)
T PLN03232        639 EIPVGSLVAIVGGTGEGKTSL-ISAMLGELSHAET  672 (1495)
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCcccCC
Confidence            478999999999999999999 8999988876543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.75  E-value=0.00066  Score=66.86  Aligned_cols=90  Identities=22%  Similarity=0.370  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCH-HHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNG-EMALEIAD  214 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~-ee~l~~i~  214 (440)
                      ++.++.++|++|+||||++.+++..+.+.+..+++++.....    .+  .+++..|+..-  ......+. ......+.
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l~  148 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAIQ  148 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHH
Confidence            467999999999999999999998888777889888876311    11  14555553210  01111122 22233333


Q ss_pred             HHHhcCCcceEEEecccccC
Q 013567          215 RMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       215 ~l~~~~~~~lvVIDsl~~l~  234 (440)
                      .. ...+.++|+||......
T Consensus       149 ~~-~~~~~D~ViIDT~G~~~  167 (272)
T TIGR00064       149 KA-KARNIDVVLIDTAGRLQ  167 (272)
T ss_pred             HH-HHCCCCEEEEeCCCCCc
Confidence            32 23568999999987654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.75  E-value=0.00011  Score=69.42  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=21.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+|+++.|.||||+||||| ++.+..
T Consensus        26 ~~~~~~~i~G~NGsGKSTl-l~~i~~   50 (213)
T cd03279          26 DNNGLFLICGPTGAGKSTI-LDAITY   50 (213)
T ss_pred             CccCEEEEECCCCCCHHHH-HHHhee
Confidence            4588999999999999999 777763

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.74  E-value=0.00022  Score=64.22  Aligned_cols=31  Identities=29%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAM  175 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv  175 (440)
                      -+.|+|+||+||||++++++..+...+-++.
T Consensus         7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg   37 (179)
T COG1618           7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVG   37 (179)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence            4789999999999998888877776654443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.73  E-value=0.00057  Score=68.81  Aligned_cols=90  Identities=19%  Similarity=0.316  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----h--hhhhhhcccccceeecCCCCH-HHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----P--SYSKALGVDVENLIVCQPDNG-EMALEI  212 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~--~~a~~lGv~~~~l~i~~~~~~-ee~l~~  212 (440)
                      .+|.++.|+||||+||||++.+++..+...+..+++++.. ...     +  .++.+.++..-  ........ ..+.+.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D-~~r~~a~eql~~~a~~~~i~~~--~~~~~~dpa~~v~~~  188 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD-TFRAAAIEQLQVWGERVGVPVI--AQKEGADPASVAFDA  188 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC-ccchhhHHHHHHHHHHcCceEE--EeCCCCCHHHHHHHH
Confidence            4689999999999999999888887777666677777654 221     1  13444443210  00111111 222222


Q ss_pred             HHHHHhcCCcceEEEecccccC
Q 013567          213 ADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      +... ...+.++|+||....+.
T Consensus       189 l~~~-~~~~~D~ViIDTaGr~~  209 (318)
T PRK10416        189 IQAA-KARGIDVLIIDTAGRLH  209 (318)
T ss_pred             HHHH-HhCCCCEEEEeCCCCCc
Confidence            2222 23578999999987665

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.72  E-value=0.00026  Score=67.68  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=26.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHH-HhhcCCcE
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAE-VQKLGGNA  174 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~-~~~~~~~v  174 (440)
                      +.+|+++.|.||||+||||| ++.+.. ...+..|+
T Consensus        28 ~~~g~~~~itG~N~~GKStl-l~~i~~~~~la~~G~   62 (222)
T cd03287          28 AEGGYCQIITGPNMGGKSSY-IRQVALITIMAQIGS   62 (222)
T ss_pred             ecCCcEEEEECCCCCCHHHH-HHHHHHHHHHHhCCC
Confidence            56899999999999999999 777766 44444444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08727 hypothetical protein; Validated

Probab=97.71  E-value=0.0003  Score=67.65  Aligned_cols=95  Identities=22%  Similarity=0.321  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCc
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAI  222 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~  222 (440)
                      ...+.|+|++|+|||.|+.-++..+.+.+..++|++.++...                       .+...++.+   ...
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~-----------------------~~~~~~~~l---~~~   94 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG-----------------------RLRDALEAL---EGR   94 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh-----------------------hHHHHHHHH---hcC
Confidence            356999999999999996666666677788889987543110                       011122222   357


Q ss_pred             ceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       223 ~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                      ++++||.+..+.....                ....+-.+....++.+.+||++++.
T Consensus        95 dlLiIDDi~~l~~~~~----------------~~~~lf~l~n~~~~~~~~vI~ts~~  135 (233)
T PRK08727         95 SLVALDGLESIAGQRE----------------DEVALFDFHNRARAAGITLLYTARQ  135 (233)
T ss_pred             CEEEEeCcccccCChH----------------HHHHHHHHHHHHHHcCCeEEEECCC
Confidence            8999999976642110                0122334555556778888888775

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=97.71  E-value=2.2e-05  Score=81.86  Aligned_cols=109  Identities=23%  Similarity=0.335  Sum_probs=69.7

Q ss_pred             cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-h-hhhhccccc-ce-
Q 013567          123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-Y-SKALGVDVE-NL-  198 (440)
Q Consensus       123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~-a~~lGv~~~-~l-  198 (440)
                      ..+.||+..+|.++  -+.+|+.+.|+|++|+||||| ++++.+...++.+++.+.+|...+-. + .+.++-... .+ 
T Consensus       147 ~~l~TGi~aID~L~--~I~~Gqri~I~G~SGsGKTTL-L~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~  223 (450)
T PRK06002        147 TGLRTGVRVIDIFT--PLCAGQRIGIFAGSGVGKSTL-LAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVA  223 (450)
T ss_pred             EEcCCCcEEeeeec--eecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEE
Confidence            45779999999886  599999999999999999999 78888888777777777665433321 1 111110011 12 


Q ss_pred             eecCCCC--H------HHHHHHHHHHHhcCCcceEEEecccccC
Q 013567          199 IVCQPDN--G------EMALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       199 ~i~~~~~--~------ee~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      ++.+.+.  .      ...+.+++.+..++.--++++||++.+.
T Consensus       224 vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A  267 (450)
T PRK06002        224 VVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFA  267 (450)
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHH
Confidence            2232221  2      2233445555545444477899988765

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.70  E-value=0.00017  Score=71.43  Aligned_cols=82  Identities=27%  Similarity=0.418  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-C-CcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL-G-GNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~-~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      +.+.++.|+||+|+||||++.+++..+... + ..+.+++.+...    ++  .+++.+|+++.     ...+..++...
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-----~~~~~~~l~~~  266 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-----VARDPKELRKA  266 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----ccCCHHHHHHH
Confidence            468899999999999999999988888765 4 688899876421    11  13444454331     12334455555


Q ss_pred             HHHHHhcCCcceEEEecc
Q 013567          213 ADRMCRSGAIDLICVDSV  230 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl  230 (440)
                      +..+   ...++|+||..
T Consensus       267 l~~~---~~~d~vliDt~  281 (282)
T TIGR03499       267 LDRL---RDKDLILIDTA  281 (282)
T ss_pred             HHHc---cCCCEEEEeCC
Confidence            5544   35799999974

>PRK12377 putative replication protein; Provisional

Probab=97.70  E-value=0.00016  Score=70.29  Aligned_cols=105  Identities=14%  Similarity=0.229  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      .-+.|+|+||+|||.||..++..+...+..|+|++..+..... ...+  +       ...+..+   .++.+   ..++
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l-~~~~--~-------~~~~~~~---~l~~l---~~~d  165 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-HESY--D-------NGQSGEK---FLQEL---CKVD  165 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH-HHHH--h-------ccchHHH---HHHHh---cCCC
Confidence            5789999999999999888888888888889998765322211 1111  0       1111222   23333   3689


Q ss_pred             eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                      +++||.+..... .+           ..    ...+..+...-.+.+.++|++|++.
T Consensus       166 LLiIDDlg~~~~-s~-----------~~----~~~l~~ii~~R~~~~~ptiitSNl~  206 (248)
T PRK12377        166 LLVLDEIGIQRE-TK-----------NE----QVVLNQIIDRRTASMRSVGMLTNLN  206 (248)
T ss_pred             EEEEcCCCCCCC-CH-----------HH----HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            999999976542 11           01    2234444444344556777777654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.69  E-value=9.8e-05  Score=68.38  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      +..|+++.|.||+||||||| ++.+.+...+..+.+.+.
T Consensus        22 v~~g~~i~I~G~tGSGKTTl-l~aL~~~i~~~~~~i~ie   59 (186)
T cd01130          22 VEARKNILISGGTGSGKTTL-LNALLAFIPPDERIITIE   59 (186)
T ss_pred             HhCCCEEEEECCCCCCHHHH-HHHHHhhcCCCCCEEEEC
Confidence            56789999999999999999 788888888888888874

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.69  E-value=0.00029  Score=66.39  Aligned_cols=29  Identities=38%  Similarity=0.434  Sum_probs=24.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ....|+++.|.||||+||||+ ++.+..++
T Consensus        25 ~~~~~~~~~l~G~n~~GKstl-l~~i~~~~   53 (204)
T cd03282          25 TRGSSRFHIITGPNMSGKSTY-LKQIALLA   53 (204)
T ss_pred             eeCCCcEEEEECCCCCCHHHH-HHHHHHHH
Confidence            345789999999999999999 77776554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=0.001  Score=68.54  Aligned_cols=87  Identities=16%  Similarity=0.251  Sum_probs=57.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      +.++.|+||+|+||||++..++..+...+..+.+++.....    ++  .+++.+|+.     +....+...+...+..+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-----v~v~~d~~~L~~aL~~l  315 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTYF  315 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-----EEecCCHHHHHHHHHHH
Confidence            47999999999999999999888887777788888865321    11  133344432     22223455555555554


Q ss_pred             HhcCCcceEEEecccccC
Q 013567          217 CRSGAIDLICVDSVSALT  234 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~  234 (440)
                      ....+.++|+||......
T Consensus       316 k~~~~~DvVLIDTaGRs~  333 (436)
T PRK11889        316 KEEARVDYILIDTAGKNY  333 (436)
T ss_pred             HhccCCCEEEEeCccccC
Confidence            333468999999877654

>PRK10867 signal recognition particle protein; Provisional

Probab=97.67  E-value=0.00046  Score=72.17  Aligned_cols=89  Identities=21%  Similarity=0.281  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALEIAD  214 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~~i~  214 (440)
                      ..++.++|++|+||||++.+++..+.+. +..++++++.. ..+.       +++..|+++-.  .....++.++...+-
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~-~R~aa~eQL~~~a~~~gv~v~~--~~~~~dp~~i~~~a~  176 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV-YRPAAIEQLKTLGEQIGVPVFP--SGDGQDPVDIAKAAL  176 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc-cchHHHHHHHHHHhhcCCeEEe--cCCCCCHHHHHHHHH
Confidence            4799999999999999999999988877 78899998763 2221       34455544211  111234444443333


Q ss_pred             HHHhcCCcceEEEecccccC
Q 013567          215 RMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       215 ~l~~~~~~~lvVIDsl~~l~  234 (440)
                      ...+..+.++|+||....+.
T Consensus       177 ~~a~~~~~DvVIIDTaGrl~  196 (433)
T PRK10867        177 EEAKENGYDVVIVDTAGRLH  196 (433)
T ss_pred             HHHHhcCCCEEEEeCCCCcc
Confidence            33445678999999987654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.0003  Score=72.93  Aligned_cols=84  Identities=20%  Similarity=0.314  Sum_probs=53.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHH-hhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEV-QKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~-~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      |..++.++.|+||+|+||||++.+++... ...+..+.+++++.--    .+  .+++.+|++..        ...++..
T Consensus       219 g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--------~~~~~~~  290 (432)
T PRK12724        219 GKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--------PVKDIKK  290 (432)
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee--------ehHHHHH
Confidence            34567899999999999999999999866 4567788888876411    11  13444555321        1112222


Q ss_pred             HHHHHHhcCCcceEEEeccc
Q 013567          212 IADRMCRSGAIDLICVDSVS  231 (440)
Q Consensus       212 ~i~~l~~~~~~~lvVIDsl~  231 (440)
                      .... +...+.++|+||+..
T Consensus       291 l~~~-l~~~~~D~VLIDTaG  309 (432)
T PRK12724        291 FKET-LARDGSELILIDTAG  309 (432)
T ss_pred             HHHH-HHhCCCCEEEEeCCC
Confidence            2222 234578999999944

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.65  E-value=0.00016  Score=75.06  Aligned_cols=124  Identities=22%  Similarity=0.323  Sum_probs=64.9

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -|++++.-+.|+||||+|||+||-.++.. .  +...+.+.+..    .....+|            ..+..+..+-...
T Consensus       174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~-l--~~~fi~i~~s~----l~~k~~g------------e~~~~lr~lf~~A  234 (398)
T PTZ00454        174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHH-T--TATFIRVVGSE----FVQKYLG------------EGPRMVRDVFRLA  234 (398)
T ss_pred             cCCCCCceEEEECCCCCCHHHHHHHHHHh-c--CCCEEEEehHH----HHHHhcc------------hhHHHHHHHHHHH
Confidence            47888899999999999999996544433 2  22223332210    0001111            1111121111223


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      +...+.+++||.+..+.+.. .....+. . ....+.+.+.+..+..+....++.||++++..+.+
T Consensus       235 ~~~~P~ILfIDEID~i~~~r-~~~~~~~-d-~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L  297 (398)
T PTZ00454        235 RENAPSIIFIDEVDSIATKR-FDAQTGA-D-REVQRILLELLNQMDGFDQTTNVKVIMATNRADTL  297 (398)
T ss_pred             HhcCCeEEEEECHhhhcccc-ccccCCc-c-HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence            34578899999999886422 1111111 0 11223444555554444344678888888866544

>PF13173 AAA_14: AAA domain

Probab=97.63  E-value=0.00028  Score=61.18  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=33.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      ++++.|.||.|+||||++.+++.... .....+|++.++.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~   40 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP   40 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH
Confidence            57899999999999999888887776 6678899987754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.63  E-value=0.00065  Score=71.07  Aligned_cols=85  Identities=20%  Similarity=0.291  Sum_probs=56.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      ..|+++.|+||+|+||||++.+++..+.  ..+..+.+++.....    ++  .+++.+|+..     ....+..++...
T Consensus       219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-----~~~~~~~~l~~~  293 (424)
T PRK05703        219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-----EVVYDPKELAKA  293 (424)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----EccCCHHhHHHH
Confidence            4578999999999999999999988876  456789999875421    11  1344455432     112334455555


Q ss_pred             HHHHHhcCCcceEEEeccccc
Q 013567          213 ADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl~~l  233 (440)
                      +..+   ...++|+||.....
T Consensus       294 l~~~---~~~DlVlIDt~G~~  311 (424)
T PRK05703        294 LEQL---RDCDVILIDTAGRS  311 (424)
T ss_pred             HHHh---CCCCEEEEeCCCCC
Confidence            5443   35799999987643

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.00014  Score=76.01  Aligned_cols=52  Identities=15%  Similarity=0.123  Sum_probs=37.4

Q ss_pred             HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       210 l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ++.++.+..  ++|++.+|..+.+..                    ...+.-|-.++..+.+|+|+++|.+.-.
T Consensus       207 laLARAlf~--~pDlLLLDEPTNhLD--------------------v~av~WLe~yL~t~~~T~liVSHDr~FL  258 (582)
T KOG0062|consen  207 LALARALFA--KPDLLLLDEPTNHLD--------------------VVAVAWLENYLQTWKITSLIVSHDRNFL  258 (582)
T ss_pred             HHHHHHHhc--CCCEEeecCCcccch--------------------hHHHHHHHHHHhhCCceEEEEeccHHHH
Confidence            445555543  688999998887763                    1234456788888999999999998744

>PRK06893 DNA replication initiation factor; Validated

Probab=97.61  E-value=0.00054  Score=65.65  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +..+.|+||||+|||+|+..++..+.+.+.++.|++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            34789999999999999666666677777889998864

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.58  E-value=0.00027  Score=67.49  Aligned_cols=26  Identities=35%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .++++++.|.||||+||||+ ++.+..
T Consensus        27 ~~~~~~~~l~G~n~~GKstl-l~~i~~   52 (222)
T cd03285          27 RGKSRFLIITGPNMGGKSTY-IRQIGV   52 (222)
T ss_pred             ecCCeEEEEECCCCCChHHH-HHHHHH
Confidence            45789999999999999999 555543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=97.58  E-value=4.3e-05  Score=79.58  Aligned_cols=48  Identities=21%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG  172 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~  172 (440)
                      -+.+.||+..||.++  =+.+|+.+.|+|++|+||||| ++++.+...++.
T Consensus       136 ~~~l~TGi~aID~ll--~I~~GQ~igI~G~sGaGKSTL-l~~I~g~~~~dv  183 (434)
T PRK07196        136 DTPLDVGVNAINGLL--TIGKGQRVGLMAGSGVGKSVL-LGMITRYTQADV  183 (434)
T ss_pred             ccccccceeeccceE--eEecceEEEEECCCCCCccHH-HHHHhcccCCCe
Confidence            457899999999986  678999999999999999999 788888776553

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.58  E-value=0.0003  Score=68.94  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHH--HhhcCCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAE--VQKLGGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMALEIA  213 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~--~~~~~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l~~i  213 (440)
                      +...++.|+|++|+||||||.+++..  ....-..++|++........     +.+.++......  ..+.+.++....+
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l   94 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--SDPKDIEELQDQL   94 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS--SCCSSHHHHHHHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            78899999999999999999998876  33344578888876554332     334444443222  3455667777777


Q ss_pred             HHHHhcCCcceEEEecccc
Q 013567          214 DRMCRSGAIDLICVDSVSA  232 (440)
Q Consensus       214 ~~l~~~~~~~lvVIDsl~~  232 (440)
                      .+.+... .-++|+|.+..
T Consensus        95 ~~~L~~~-~~LlVlDdv~~  112 (287)
T PF00931_consen   95 RELLKDK-RCLLVLDDVWD  112 (287)
T ss_dssp             HHHHCCT-SEEEEEEEE-S
T ss_pred             hhhhccc-cceeeeeeecc
Confidence            7766544 66899998653

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.57  E-value=0.00036  Score=70.58  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      .-+.|+|++|+|||.|+..++..+...+..|+|++..+.++......+         ......++   .+..+   ..++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~---------~~~~~~~~---~~~~l---~~~D  248 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF---------NNDKELEE---VYDLL---INCD  248 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh---------ccchhHHH---HHHHh---ccCC
Confidence            568999999999999988888888888889999986543222111000         00011111   13333   3589


Q ss_pred             eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                      ++|||.+..... .+.               ....+..+.......+.++|+++...
T Consensus       249 LLIIDDlG~e~~-t~~---------------~~~~Lf~iin~R~~~~k~tIiTSNl~  289 (329)
T PRK06835        249 LLIIDDLGTEKI-TEF---------------SKSELFNLINKRLLRQKKMIISTNLS  289 (329)
T ss_pred             EEEEeccCCCCC-CHH---------------HHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            999999987642 110               11233444444445566677776653

>PRK14974 cell division protein FtsY; Provisional

Probab=97.57  E-value=0.0018  Score=65.68  Aligned_cols=88  Identities=17%  Similarity=0.282  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHH-HHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMA-LEIAD  214 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~-l~~i~  214 (440)
                      +.++.++|+||+||||++.+++..+...+..++++++.. +..       .++..+|+..-..  ....+...+ .+.++
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt-~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~~ai~  216 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT-FRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAYDAIE  216 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc-CcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHHHHHH
Confidence            579999999999999998888877766667788877542 211       1345555533211  111122222 23333


Q ss_pred             HHHhcCCcceEEEecccccC
Q 013567          215 RMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       215 ~l~~~~~~~lvVIDsl~~l~  234 (440)
                      . ....+.++|+||....+.
T Consensus       217 ~-~~~~~~DvVLIDTaGr~~  235 (336)
T PRK14974        217 H-AKARGIDVVLIDTAGRMH  235 (336)
T ss_pred             H-HHhCCCCEEEEECCCccC
Confidence            2 234568899999987665

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=97.56  E-value=0.00029  Score=65.95  Aligned_cols=45  Identities=33%  Similarity=0.548  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD  184 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~  184 (440)
                      -+|.|.-+.++|.||+||||| |+++.+-.-.+.+++-+.+...+.
T Consensus        36 dlp~gsRcLlVGaNGaGKtTl-LKiLsGKhmv~~~~v~VlgrsaFh   80 (291)
T KOG2355|consen   36 DLPAGSRCLLVGANGAGKTTL-LKILSGKHMVGGGVVQVLGRSAFH   80 (291)
T ss_pred             ccCCCceEEEEecCCCchhhh-HHHhcCcccccCCeEEEcCcCccc
Confidence            689999999999999999999 999987655556777776665554

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.55  E-value=0.00049  Score=70.58  Aligned_cols=87  Identities=20%  Similarity=0.337  Sum_probs=54.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cC-CcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LG-GNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMAL  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~-~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l  210 (440)
                      -++.|.++.|+||+|+||||++.+++..+.. .+ ..+.+++.+...    ++  .+++.+|+...   .  ..+..++.
T Consensus       133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---~--~~~~~~l~  207 (374)
T PRK14722        133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---A--VKDGGDLQ  207 (374)
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE---e--cCCcccHH
Confidence            3677999999999999999998888887653 34 467777755321    11  14555665331   1  11222222


Q ss_pred             HHHHHHHhcCCcceEEEeccccc
Q 013567          211 EIADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       211 ~~i~~l~~~~~~~lvVIDsl~~l  233 (440)
                      ..+.++   .+.++|+||.....
T Consensus       208 ~~l~~l---~~~DlVLIDTaG~~  227 (374)
T PRK14722        208 LALAEL---RNKHMVLIDTIGMS  227 (374)
T ss_pred             HHHHHh---cCCCEEEEcCCCCC
Confidence            333332   35789999998644

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.55  E-value=0.00065  Score=63.62  Aligned_cols=26  Identities=35%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKL  170 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~  170 (440)
                      ++.|+||+||||||++..++......
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~   28 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKN   28 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            79999999999999944444444333

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.55  E-value=0.0012  Score=65.45  Aligned_cols=131  Identities=15%  Similarity=0.071  Sum_probs=84.2

Q ss_pred             CcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChh-----hhhhhcccc
Q 013567          128 GCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPS-----YSKALGVDV  195 (440)
Q Consensus       128 Gi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~-----~a~~lGv~~  195 (440)
                      -+..|..++. ..-.+=-...|+|+++.|||+++-++....-.      ..-+|+++.....++..     +...+|+..
T Consensus        45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~  124 (302)
T PF05621_consen   45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY  124 (302)
T ss_pred             HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence            3445555553 12222234899999999999997777754321      11367888765555442     344555543


Q ss_pred             cceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Q 013567          196 ENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIF  275 (440)
Q Consensus       196 ~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~  275 (440)
                      .     ...+.......+..+++..+++++|||.+..+..        |.      .+.-+.++..|+.+..+.++++|.
T Consensus       125 ~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs------~~~qr~~Ln~LK~L~NeL~ipiV~  185 (302)
T PF05621_consen  125 R-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GS------YRKQREFLNALKFLGNELQIPIVG  185 (302)
T ss_pred             C-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------cc------HHHHHHHHHHHHHHhhccCCCeEE
Confidence            2     2334555555666777788999999999988763        21      122356777788889999999998


Q ss_pred             Ee
Q 013567          276 LN  277 (440)
Q Consensus       276 in  277 (440)
                      +.
T Consensus       186 vG  187 (302)
T PF05621_consen  186 VG  187 (302)
T ss_pred             ec
Confidence            84

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.55  E-value=0.00057  Score=65.78  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .+..+.|+||+|+|||+|+..++..+...+..+.|++.+
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~   82 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD   82 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence            346889999999999999665666666677788898764

>PF05729 NACHT: NACHT domain

Probab=97.53  E-value=0.00071  Score=60.01  Aligned_cols=123  Identities=19%  Similarity=0.254  Sum_probs=61.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCC------cEEEEcCCCCCChhhhhhhcccccceeecC-CCCHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGG------NAMLVDAEHAFDPSYSKALGVDVENLIVCQ-PDNGEMALEIADRM  216 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~------~vv~id~E~~~~~~~a~~lGv~~~~l~i~~-~~~~ee~l~~i~~l  216 (440)
                      +++.|.|++|+||||++.+++........      -++|+.............    +.++.... .............+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~   76 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRS----LADLLFDQLPESIAPIEELLQEL   76 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccch----HHHHHHHhhccchhhhHHHHHHH
Confidence            47899999999999998888877775431      234455443332211101    11111100 11111111123333


Q ss_pred             HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                      ......-+++||.+-.+......          ...+.+...+..+.....-.++.+|+++-..
T Consensus        77 ~~~~~~~llilDglDE~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~  130 (166)
T PF05729_consen   77 LEKNKRVLLILDGLDELEEQDQS----------QERQRLLDLLSQLLPQALPPGVKLIITSRPR  130 (166)
T ss_pred             HHcCCceEEEEechHhcccchhh----------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence            33445557899998877631110          0111234444444443333577788776543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.52  E-value=0.00052  Score=71.93  Aligned_cols=123  Identities=22%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      |+.++.-+.|+||||+|||++|- .+++...  ...+.+.+.+..    ...+|            .....+..+-....
T Consensus       213 gi~~p~gVLL~GPPGTGKT~LAr-aIA~el~--~~fi~V~~seL~----~k~~G------------e~~~~vr~lF~~A~  273 (438)
T PTZ00361        213 GIKPPKGVILYGPPGTGKTLLAK-AVANETS--ATFLRVVGSELI----QKYLG------------DGPKLVRELFRVAE  273 (438)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHH-HHHHhhC--CCEEEEecchhh----hhhcc------------hHHHHHHHHHHHHH
Confidence            78888889999999999999954 4444332  223333321110    00001            11111111112223


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      .+.+.+++||.+..+..........++.   ...+.+.+.+..+..+....++.||++++..+.+
T Consensus       274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~---e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L  335 (438)
T PTZ00361        274 ENAPSIVFIDEIDAIGTKRYDATSGGEK---EIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL  335 (438)
T ss_pred             hCCCcEEeHHHHHHHhccCCCCCCcccH---HHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence            4567899999988776432211111211   1233445555555555556688899888765544

>PRK13695 putative NTPase; Provisional

Probab=97.52  E-value=0.00038  Score=63.54  Aligned_cols=29  Identities=34%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGN  173 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~  173 (440)
                      .+.|.|+||+|||||+..++..+...+..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~   30 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYK   30 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence            47899999999999955554444433433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
3cmu_A	2050	Mechanism Of Homologous Recombination From The Reca		1e-95
3cmt_A	1706	Mechanism Of Homologous Recombination From The Reca		1e-95
1n03_A	352	Model For Active Reca Filament Length = 352		2e-95
3cmv_A	1357	Mechanism Of Homologous Recombination From The Reca		2e-95
1u94_A	356	Crystal Structure Of E. Coli Reca In A Compressed H		2e-95
2rec_A	353	Reca Hexamer Model, Electron Microscopy Length = 35		2e-95
1ubc_A	349	Structure Of Reca Protein Length = 349		2e-95
2zr0_A	349	Msreca-Q196e Mutant Length = 349		6e-95
2zrc_A	349	Msreca Q196n Form Iv Length = 349		1e-94
2zrh_A	349	Msreca Q196a Form Iv Length = 349		1e-94
1g18_A	350	Reca-Adp-Alf4 Complex Length = 350		3e-94
3hr8_A	356	Crystal Structure Of Thermotoga Maritima Reca Lengt		7e-88
1xp8_A	366	"deinococcus Radiodurans Reca In Complex With Atp-G		1e-86
2dfl_A	324	Crystal Structure Of Left-Handed Rada Filament Leng		3e-12
2bke_A	324	Conformational Flexibility Revealed By The Crystal		9e-12
1aa3_A	63	C-Terminal Domain Of The E. Coli Reca, Nmr, Minimiz		3e-07
1pzn_A	349	Rad51 (Rada) Length = 349		7e-07
1v5w_A	343	Crystal Structure Of The Human Dmc1 Protein Length		6e-06
2zjb_A	343	Crystal Structure Of The Human Dmc1-M200v Polymorph		8e-06
2cvf_A	220	Crystal Structure Of The Radb Recombinase Length =		1e-05
4b2i_A	231	Humanised Monomeric Rada In Complex With Indazole L		3e-05
1szp_A	321	A Crystal Structure Of The Rad51 Filament Length =		4e-05
2gdj_A	264	Delta-62 Rada Recombinase In Complex With Amp-Pnp A		5e-05
4dc9_A	266	Hexameric Ring Of Methanococcus Voltae Rada Length		6e-05
3lda_A	400	Yeast Rad51 H352y Filament Interface Mutant Length		6e-05
3etl_A	322	Rada Recombinase From Methanococcus Maripaludis In		9e-05
1t4g_A	322	Atpase In Complex With Amp-pnp Length = 322		1e-04
3ntu_A	319	Rada Recombinase D302k Mutant In Complex With Amp-P		1e-04
2f1h_A	322	Recombinase In Complex With Amp-pnp And Potassium L		3e-04
4a6p_A	231	Rada C-Terminal Atpase Domain From Pyrococcus Furio		4e-04

>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 2050

Iteration: 1
 Score =  346 bits (888), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K            
Sbjct: 509 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 566
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
             A  +L+DNP   +EIEK VR ++
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELL 651

>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1706

Iteration: 1
 Score =  346 bits (888), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/343 (50%), Positives = 229/343 (66%), Gaps = 5/343 (1%)
Query: 74   GKVNGFSSDSGDSRFLD--RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLT 131
            G     S  +G    +D  +Q+AL AA+  I   FGKGS+ RLG      VET  +G L+
Sbjct: 1359 GSTGSMSGRTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLS 1418
Query: 132  LDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA 190
            LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ 
Sbjct: 1419 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 1478
Query: 191  LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGL 250
            LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL
Sbjct: 1479 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 1538
Query: 251  QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
             AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR
Sbjct: 1539 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 1598
Query: 311  STGKIKSXXXXXXXXXXXXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIV 370
              G +K                       P+KQAEF+I++GEG++  G ++D      ++
Sbjct: 1599 RIGAVKE--GENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLI 1656
Query: 371  VRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
             + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++
Sbjct: 1657 EKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 1699

>pdb|1N03|A Chain A, Model For Active Reca Filament Length = 352

Iteration: 1
 Score =  346 bits (887), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct: 5   NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 64
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct: 65  YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 124
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct: 125 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 184
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K            
Sbjct: 185 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 242
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct: 243 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 302
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
             A  +L+DNP   +EIEK VR ++
Sbjct: 303 ANATAWLKDNPETAKEIEKKVRELL 327

>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1357

Iteration: 1
 Score =  346 bits (887), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K            
Sbjct: 509 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 566
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
             A  +L+DNP   +EIEK VR ++
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELL 651

>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical Filament Form 2 Length = 356

Iteration: 1
 Score =  346 bits (887), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct: 9   NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 68
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct: 69  YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 128
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct: 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 188
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K            
Sbjct: 189 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 246
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct: 247 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 306
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
             A  +L+DNP   +EIEK VR ++
Sbjct: 307 ANATAWLKDNPETAKEIEKKVRELL 331

>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy Length = 353

Iteration: 1
 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct: 66  YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K            
Sbjct: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 243
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
             A  +L+DNP   +EIEK VR ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELL 328

>pdb|1UBC|A Chain A, Structure Of Reca Protein Length = 349

Iteration: 1
 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/330 (50%), Positives = 232/330 (70%), Gaps = 3/330 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ AM  I+ +FGKGSV RLG      +   P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +G T IF+NQ+R KIGV +G+PE T+GG ALKF+ASVRL++R    +K            
Sbjct: 187 SGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++G+G+S+ G ++D       + + G+W++Y  ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           + A ++L +N  +  EIEK ++  +  G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334

>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant Length = 349

Iteration: 1
 Score =  344 bits (883), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 232/330 (70%), Gaps = 3/330 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ AM  I+ +FGKGSV RLG      +   P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +G T IF+N++R KIGV +G+PE T+GG ALKF+ASVRL++R    +K            
Sbjct: 187 SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++G+G+S+ G ++D       + + G+W++Y  ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           + A ++L +N  +  EIEK ++  +  G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334

>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv Length = 349

Iteration: 1
 Score =  343 bits (880), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 231/330 (70%), Gaps = 3/330 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ AM  I+ +FGKGSV RLG      +   P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +G T IF+N +R KIGV +G+PE T+GG ALKF+ASVRL++R    +K            
Sbjct: 187 SGTTAIFINNLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++G+G+S+ G ++D       + + G+W++Y  ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           + A ++L +N  +  EIEK ++  +  G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334

>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv Length = 349

Iteration: 1
 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 231/330 (70%), Gaps = 3/330 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ AM  I+ +FGKGSV RLG      +   P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +G T IF+N +R KIGV +G+PE T+GG ALKF+ASVRL++R    +K            
Sbjct: 187 SGTTAIFINALREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++G+G+S+ G ++D       + + G+W++Y  ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           + A ++L +N  +  EIEK ++  +  G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334

>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex Length = 350

Iteration: 1
 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 231/330 (70%), Gaps = 3/330 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ A+  I  S+GKGSV RLG      +   P+G + LD+ALG GGLP+GR++EI
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEI 65
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 66  YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D++ +DSV+AL PRAE+EGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +G T IF+NQ+R KIGV +G+PE T+GG ALKF+ASVR+++R    +K            
Sbjct: 186 SGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKD--GTNAVGNRT 243
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+KQAEF+I++G+G+S+ G ++D      ++ + GAW++Y  ++LGQG+
Sbjct: 244 RVKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGK 303
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
           + A  +L +N  + +EIEK ++  +  G+V
Sbjct: 304 ENARNFLVENADVADEIEKKIKEKLGIGAV 333

>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca Length = 356

Iteration: 1
 Score =  320 bits (821), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 165/327 (50%), Positives = 220/327 (67%), Gaps = 9/327 (2%)
Query: 91  RQRALDAAMNDINSSFGKGSVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++  L+ A+  I  +FGKGS+  LG       VE  P+G L +D+A G GG P+GRIVEI
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           FG ESSGKTTLALHAIAE QK+GG A  +DAEHA DP Y+K LGVD+++L++ QPD+GE 
Sbjct: 67  FGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI D + RSG +DLI VDSV+AL PRAEIEG +G  Q+GLQARLMSQALRK++G+ +K
Sbjct: 127 ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
           +   +IF NQIR KIGV +G+PE T+GG+ALKF+A++R+E+R    IK            
Sbjct: 187 SKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKE--GKDVIGNVI 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQR----- 383
                      P+K A+  II+G+G+ +   + + A    IV RKG+WY Y   +     
Sbjct: 245 SVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVS 304
Query: 384 LGQGRDKALQYLRDNPLLQEEIEKVVR 410
           LGQG   A+Q+L+DNP +  EIE+ +R
Sbjct: 305 LGQGSSNAVQFLKDNPEIAGEIERRIR 331

>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S" Length = 366

Iteration: 1
 Score =  317 bits (811), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 227/329 (68%), Gaps = 2/329 (0%)
Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           +R +A++ AM+ I  +FGKGS+ +LG+     V+   +G L+LDLALG GG+P+GRI EI
Sbjct: 20  ERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEI 79
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPES GKTTLAL  +A+ QK GG    +DAEHA DP Y++ALGV+ + L+V QPDNGE 
Sbjct: 80  YGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ 139
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI + + RSGAID++ VDSV+ALTPRAEIEG++G    GLQARLMSQALRK++   SK
Sbjct: 140 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK 199
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
            G   IF+NQ+R KIGV YGNPE T+GG ALKF+ASVRL++R  G+  +           
Sbjct: 200 TGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQ-PTKVGNDAVANTV 258
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
                      P+K+ E  +++G+G  +L  ++  A  MDI+ + G++YSYGD+R+GQG+
Sbjct: 259 KIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGK 318
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGS 417
           +K + Y+ + P +++EI   V + +  G+
Sbjct: 319 EKTIAYIAERPEMEQEIRDRVMAAIRAGN 347

>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament Length = 324

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------KLGGNAM 175
           V+   +G   LD  L GG+    + E FG   SGKT L       VQ       L G A+
Sbjct: 86  VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAV 145
Query: 176 LVDAEHAFD----PSYSKALGVDVENLI----VCQPDNGEMALEIADRM----CRSGAID 223
            +D E  F      + +KALG+D++N++      +  N +  + I D +     +  +I 
Sbjct: 146 YIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIK 205
Query: 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283
           LI VDSV++   RAE  G    + + ++ + +++ L +++  A      +I  NQ+  + 
Sbjct: 206 LIVVDSVTSHF-RAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261
Query: 284 GVYYGNPEVTSGGIALKFFASVRLEIRST 312
            ++YG+P V  GG  L     +R++++ +
Sbjct: 262 DMFYGDPTVAVGGHTLYHVPGIRIQLKKS 290

>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal Structure Of A Crenarchaeal Rada Length = 324

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------KLGGNAM 175
           V+   +G   LD  L GG+      E FG   SGKT L       VQ       L G A+
Sbjct: 86  VKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAV 145
Query: 176 LVDAEHAFD----PSYSKALGVDVEN----LIVCQPDNGEMALEIADRM----CRSGAID 223
            +D E  F      + +KALG+D++N    +   +  N +  + I D +     +  +I 
Sbjct: 146 YIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELVSKDPSIK 205
Query: 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283
           LI VDSV++   RAE  G    + + ++ + +++ L +++  A      +I  NQ+  + 
Sbjct: 206 LIVVDSVTSHF-RAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVXARP 261
Query: 284 GVYYGNPEVTSGGIALKFFASVRLEIRST 312
             +YG+P V  GG  L     +R++++ +
Sbjct: 262 DXFYGDPTVAVGGHTLYHVPGIRIQLKKS 290

>pdb|1AA3|A Chain A, C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized Average Structure Length = 63

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 358 GCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
           G ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++
Sbjct: 5   GELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 60

>pdb|1PZN|A Chain A, Rad51 (Rada) Length = 349

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 38/212 (17%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA-------EVQKLGGNAMLVDA 179
           +G  +LD  LGGG+    I E+FG   SGKT LA H +A       E   L G+ + +D 
Sbjct: 115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVXVQLPPEEGGLNGSVIWIDT 173
Query: 180 EHAFDPS---------------------YSKALGVDVENLIVCQPDNGEMALEIADRMCR 218
           E+ F P                       ++A   + + L+V Q ++    L   DR  +
Sbjct: 174 ENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKELLNTDRPVK 233
Query: 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ 278
                L+ VDS+++   R+E    IG   +  + + +++ L  +   A+     +   NQ
Sbjct: 234 -----LLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284
Query: 279 IRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
           ++ +   ++G+P    GG  L   A++R+ +R
Sbjct: 285 VQARPDAFFGDPTRPIGGHILAHSATLRVYLR 316

>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein Length = 343

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 28/213 (13%)
Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGN 173
           +V    +G    D  LGGG+    I E FG   +GKT L+ H +    +L       GG 
Sbjct: 100 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGK 158
Query: 174 AMLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIADRMC-----RSG 220
            + +D E+ F P      +    VD    ++N++  +    E  +E+ D +       +G
Sbjct: 159 IIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAG 218
Query: 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280
              L+ +DS+ AL  R +  G     ++  + + ++Q L ++   + +    +   NQ+ 
Sbjct: 219 IFKLLIIDSIMALF-RVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274
Query: 281 YKIG---VYYGNPEVTSGGIALKFFASVRLEIR 310
              G    +  +P+   GG  L   ++ R+ +R
Sbjct: 275 ADPGATMTFQADPKKPIGGHILAHASTTRISLR 307

>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic Variant Length = 343

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 28/213 (13%)
Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGN 173
           +V    +G    D  LGGG+    I E FG   +GKT L+ H +    +L       GG 
Sbjct: 100 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGK 158
Query: 174 AMLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIADRMC-----RSG 220
            + +D E+ F P      +    VD    ++N++  +    E  +E+ D +       +G
Sbjct: 159 IIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDYVAAKFHEEAG 218
Query: 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280
              L+ +DS+ AL  R +  G     ++  + + ++Q L ++   + +    +   NQ+ 
Sbjct: 219 IFKLLIIDSIMALF-RVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274
Query: 281 YKIG---VYYGNPEVTSGGIALKFFASVRLEIR 310
              G    +  +P+   GG  L   ++ R+ +R
Sbjct: 275 ADPGATMTFQADPKKPIGGHILAHASTTRISLR 307

>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase Length = 220

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM-LVDAEHAFDP 185
           +G  +LD  LGGG   G + +++GP +SGKTTLAL    +   L G  +  VD E  F P
Sbjct: 4   TGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL----QTGLLSGKKVAYVDTEGGFSP 59
Query: 186 ----SYSKALGVDVE----NLIVCQPDNGEMALEIADRMCRS--GAIDLICVDSVSALTP 235
                 ++  G++ E      I+  P + +    +   + ++      L+ VDS++A   
Sbjct: 60  ERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY- 118
Query: 236 RAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281
           RAE        + GL A L S+ L+ +   A K    +I +NQ+ +
Sbjct: 119 RAE------ENRSGLIAEL-SRQLQVLLWIARKHNIPVIVINQVHF 157

>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 50/219 (22%)
Query: 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA-------EVQKLGG 172
           A +    +G  +LD  LGGG+    I E+FG   SGKT LA H +A       E   L G
Sbjct: 2   ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNG 60
Query: 173 NAMLVDAEHAFDP---------------------SYSKALGVDVENLIVCQPDNGEMALE 211
           + M +D E+ F P                     +Y++A   + + L+V Q ++    L 
Sbjct: 61  SVMWIDTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMIKELL 120
Query: 212 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGC 271
             DR      + L+ VDS+++   R+E  G   + +         Q L K   +  +   
Sbjct: 121 NTDR-----PVKLLIVDSLTSHF-RSEYIGRGALAE-------RQQKLAKHLADLHRLAN 167
Query: 272 TLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
                    Y I V+  N    +GG  L   A++R+ +R
Sbjct: 168 L--------YDIAVFVTNQVQANGGHILAHSATLRVYLR 198

>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-------GNAMLVDA 179
           +G   LD  LGGG+  G I E+FG   +GK+ L  H +A   ++        G  + +D 
Sbjct: 83  TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDT 141
Query: 180 EHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIAD---RMCRSGAIDLICVD 228
           E  F P    S ++  G+D    + N+   +  N +  L + D   +M       LI VD
Sbjct: 142 EGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVD 201
Query: 229 SVSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMS 263
           SV AL  R +    GE+  +Q+ L A+ M +AL++++
Sbjct: 202 SVMALY-RTDFSGRGELSARQMHL-AKFM-RALQRLA 235

>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And Magnesium Length = 264

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
           LD  LGGGL    + E  G   SGKT + +H                 A+++ +     A
Sbjct: 29  LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 87
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
           + +D E  F P      ++  G+D    ++N  V +  N +M +    +I D +     I
Sbjct: 88  VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 147
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
            L+ +DS+++ T R E  G     ++  + + + + +  ++  A    C ++  NQ+  K
Sbjct: 148 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 203
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
              ++G  E   GG  +   A+ R  +R
Sbjct: 204 PDAFFGMAEQAIGGHIVGHAATFRFFVR 231

>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
           LD  LGGGL    + E  G   SGKT + +H                 A+++ +     A
Sbjct: 31  LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 89
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
           + +D E  F P      ++  G+D    ++N  V +  N +M +    +I D +     I
Sbjct: 90  VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 149
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
            L+ +DS+++ T R E  G     ++  + + + + +  ++  A    C ++  NQ+  K
Sbjct: 150 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 205
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
              ++G  E   GG  +   A+ R  +R
Sbjct: 206 PDAFFGMAEQAIGGHIVGHAATFRFFVR 233

>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant Length = 400

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-------GNAMLVDA 179
           +G   LD  LGGG+  G I E+FG   +GK+ L  H +A   ++        G  + +D 
Sbjct: 162 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDT 220
Query: 180 EHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIAD---RMCRSGAIDLICVD 228
           E  F P    S ++  G+D    + N+   +  N +  L + D   +M       LI VD
Sbjct: 221 EGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVD 280
Query: 229 SVSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMS 263
           SV AL  R +    GE+  +Q+ L A+ M +AL++++
Sbjct: 281 SVMALY-RTDFSGRGELSARQMHL-AKFM-RALQRLA 314

>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex With Amppnp Length = 322

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 32/219 (14%)
Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------------- 168
           V    +G   LD  L GG+    + E  G   SGKT +       +Q             
Sbjct: 77  VWRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFADLEGVV 136
Query: 169 ---KLGGNAMLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIA 213
                   A+ +D E  F P      ++  G+D    ++N  V +  N +M +    +I 
Sbjct: 137 EEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQMLFAEKIE 196
Query: 214 DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTL 273
           D +     I L+ +DS+++ T R E  G     ++  + + + + +  ++  A    C +
Sbjct: 197 DLIKGGNNIKLVIIDSLTS-TFRNEFTGR---GKLAERQQKLGRHMATLNKLADLYNCIV 252
Query: 274 IFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRST 312
           +  NQ+  K   Y+G  E   GG  +   A+ R  +R +
Sbjct: 253 LVTNQVAAKPDAYFGVAEQAIGGHVVGHAATFRFFLRKS 291

>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp Length = 322

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
           LD  LGGGL    + E  G   SGKT + +H                 A+++ +     A
Sbjct: 87  LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 145
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
           + +D E  F P      ++  G+D    ++N  V +  N +M +    +I D +     I
Sbjct: 146 VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 205
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
            L+ +DS+++ T R E  G     ++  + + + + +  ++  A    C ++  NQ+  K
Sbjct: 206 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 261
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
              ++G  E   GG  +   A+ R  +R
Sbjct: 262 PDAFFGMAEQAIGGHIVGHAATFRFFVR 289

>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
           LD  LGGGL    + E  G   SGKT + +H                 A+++ +     A
Sbjct: 84  LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 142
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
           + +D E  F P      ++  G+D    ++N  V +  N +M +    +I D +     I
Sbjct: 143 VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 202
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
            L+ +DS+++ T R E  G     ++  + + + + +  ++  A    C ++  NQ+  K
Sbjct: 203 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 258
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
              ++G  E   GG  +   A+ R  +R
Sbjct: 259 PDAFFGMAEQAIGGHIVGHAATFRFFVR 286

>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium Length = 322

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
           LD  LGGGL    + E  G   SGKT + +H                 A+++ +     A
Sbjct: 87  LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 145
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
           + +D +  F P      ++  G+D    ++N  V +  N +M +    +I D +     I
Sbjct: 146 VYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 205
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
            L+ +DS+++ T R E  G     ++  + + + + +  ++  A    C ++  NQ+  K
Sbjct: 206 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 261
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
              ++G  E   GG  +   A+ R  +R
Sbjct: 262 PDAFFGMAEQAIGGHIVGHAATFRFFVR 289

>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 40/214 (18%)
Query: 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA-------EVQKLGG 172
           A +    +G  +LD  LGGG+    I E+FG   SGKT LA H +A       E   L G
Sbjct: 2   ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNG 60
Query: 173 NAMLVDAEHAFDPSYSKAL----GVD----VENLIVCQP--DNGEMAL------EIADRM 216
           + + +D E+ F P   + +    G+D    ++++ V +    N +M L      +I + +
Sbjct: 61  SVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELL 120
Query: 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 276
                + L+ VDS+++   R+E  G   + +         Q L K   +  +        
Sbjct: 121 NTDRPVKLLIVDSLTSHF-RSEYIGRGALAE-------RQQKLAKHLADLHRLANL---- 168
Query: 277 NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
               Y I V+  N    +GG  L   A++R+ +R
Sbjct: 169 ----YDIAVFVTNQVQANGGHILAHSATLRVYLR 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	0.0
1u94_A	356	RECA protein, recombinase A; homologous recombinat	0.0
1xp8_A	366	RECA protein, recombinase A; recombination, radior	0.0
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	1e-179
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-167
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-166
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-165
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-165
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-153
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-165
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-165
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-164
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-163
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-162
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-153
3io5_A	333	Recombination and repair protein; storage dimer, i	1e-133
2z43_A	324	DNA repair and recombination protein RADA; archaea	4e-65
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	3e-59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	2e-52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	8e-52
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	4e-50
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	1e-48
2cvh_A	220	DNA repair and recombination protein RADB; filamen	1e-14
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	2e-11
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	2e-08
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	9e-09
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	1e-08
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	6e-05
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	3e-04

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Length = 349

 Score =  513 bits (1324), Expect = 0.0
 Identities = 174/325 (53%), Positives = 243/325 (74%), Gaps = 3/325 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ AM  I+ +FGKGSV RLG      +   P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
           +G T IF+N++R KIGV +G+PE T+GG ALKF+ASVRL++R    +K   G + VG R 
Sbjct: 187 SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLK--DGTDAVGNRT 244

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           RV+V K+KVS P+KQAEF+I++G+G+S+ G ++D       + + G+W++Y  ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
           + A ++L +N  +  EIEK ++  +
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKL 329

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Length = 356

 Score =  511 bits (1317), Expect = 0.0
 Identities = 184/352 (52%), Positives = 246/352 (69%), Gaps = 5/352 (1%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct: 9   NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 68

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct: 69  YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 128

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct: 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 188

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
           +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K  +G+  VG   
Sbjct: 189 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSET 246

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
           RV+V K+K++ P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct: 247 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 306

Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEEF 440
             A  +L+DNP   +EIEK VR ++         F  + S    E N  E+F
Sbjct: 307 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETN--EDF 356

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Length = 366

 Score =  508 bits (1309), Expect = 0.0
 Identities = 168/330 (50%), Positives = 240/330 (72%), Gaps = 4/330 (1%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           +R +A++ AM+ I  +FGKGS+ +LG+     V+   +G L+LDLALG GG+P+GRI EI
Sbjct: 20  ERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEI 79

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPES GKTTLAL  +A+ QK GG    +DAEHA DP Y++ALGV+ + L+V QPDNGE 
Sbjct: 80  YGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ 139

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI + + RSGAID++ VDSV+ALTPRAEIEG++G    GLQARLMSQALRK++   SK
Sbjct: 140 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK 199

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGK-IKSVKGDEDVGVR 327
            G   IF+NQ+R KIGV YGNPE T+GG ALKF+ASVRL++R  G+  K   G++ V   
Sbjct: 200 TGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTK--VGNDAVANT 257

Query: 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQG 387
           V+++  K+KV+ P+K+ E  +++G+G  +L  ++  A  MDI+ + G++YSYGD+R+GQG
Sbjct: 258 VKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQG 317

Query: 388 RDKALQYLRDNPLLQEEIEKVVRSMMSDGS 417
           ++K + Y+ + P +++EI   V + +  G+
Sbjct: 318 KEKTIAYIAERPEMEQEIRDRVMAAIRAGN 347

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Length = 356

 Score =  504 bits (1299), Expect = e-179
 Identities = 171/331 (51%), Positives = 233/331 (70%), Gaps = 9/331 (2%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVE 147
            ++  L+ A+  I  +FGKGS+  LG       VE  P+G L +D+A G GG P+GRIVE
Sbjct: 6   QKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 148 IFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE 207
           IFG ESSGKTTLALHAIAE QK+GG A  +DAEHA DP Y+K LGVD+++L++ QPD+GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 208 MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNAS 267
            ALEI D + RSG +DLI VDSV+AL PRAEIEG +G  Q+GLQARLMSQALRK++G+ +
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 268 KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327
           K+   +IF NQIR KIGV +G+PE T+GG+ALKF+A++R+E+R    IK  +G + +G  
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIK--EGKDVIGNV 243

Query: 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQ----- 382
           + V++ K+KV+ P+K A+  II+G+G+ +   + + A    IV RKG+WY Y        
Sbjct: 244 ISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEV 303

Query: 383 RLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
            LGQG   A+Q+L+DNP +  EIE+ +R   
Sbjct: 304 SLGQGSSNAVQFLKDNPEIAGEIERRIREKY 334

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  510 bits (1315), Expect = e-167
 Identities = 180/376 (47%), Positives = 244/376 (64%), Gaps = 3/376 (0%)

Query: 61  ARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGA 120
                   S           S    +   ++Q+AL AA+  I   FGKGS+ RLG     
Sbjct: 300 ELLLSNPNSTTGSTGSGTTGSTGSMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM 359

Query: 121 LVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179
            VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DA
Sbjct: 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419

Query: 180 EHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEI 239
           EHA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEI
Sbjct: 420 EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 479

Query: 240 EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299
           EGEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG AL
Sbjct: 480 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 539

Query: 300 KFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359
           KF+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG++  G 
Sbjct: 540 KFYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 597

Query: 360 MLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVH 419
           ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++      
Sbjct: 598 LVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 657

Query: 420 QGSFLRNVSLPNQEEN 435
                 ++       +
Sbjct: 658 TTGSTGSMGHTTGSMS 673

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  509 bits (1313), Expect = e-166
 Identities = 182/376 (48%), Positives = 247/376 (65%), Gaps = 3/376 (0%)

Query: 61   ARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGA 120
                    S        G ++ S  +   ++Q+AL AA+  I   FGKGS+ RLG     
Sbjct: 649  ELLLSNPNSTTGSTGSMGHTTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM 708

Query: 121  LVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179
             VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DA
Sbjct: 709  DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768

Query: 180  EHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEI 239
            EHA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEI
Sbjct: 769  EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 828

Query: 240  EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299
            EGEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG AL
Sbjct: 829  EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 888

Query: 300  KFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359
            KF+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG++  G 
Sbjct: 889  KFYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 946

Query: 360  MLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVH 419
            ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++      
Sbjct: 947  LVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 1006

Query: 420  QGSFLRNVSLPNQEEN 435
                  + S  +    
Sbjct: 1007 TTGSTGSASGSSTGSM 1022

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  506 bits (1306), Expect = e-165
 Identities = 179/348 (51%), Positives = 241/348 (69%), Gaps = 3/348 (0%)

Query: 70   CEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGC 129
                       + S  +   ++Q+AL AA+  I   FGKGS+ RLG      VET  +G 
Sbjct: 1357 TTGSTGSMSGRTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGS 1416

Query: 130  LTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS 188
            L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y+
Sbjct: 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 1476

Query: 189  KALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQI 248
            + LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +
Sbjct: 1477 RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 1536

Query: 249  GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE 308
            GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+
Sbjct: 1537 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 1596

Query: 309  IRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMD 368
            IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG++  G ++D      
Sbjct: 1597 IRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEK 1654

Query: 369  IVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDG 416
            ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++   
Sbjct: 1655 LIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSN 1702

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  505 bits (1302), Expect = e-165
 Identities = 184/381 (48%), Positives = 253/381 (66%), Gaps = 3/381 (0%)

Query: 56   SKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLG 115
             K+      +   +    G  +G S+ S  +   ++Q+AL AA+  I   FGKGS+ RLG
Sbjct: 994  KKVRELLLSNPNSTTGSTGSASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLG 1053

Query: 116  SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA 174
                  VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G   
Sbjct: 1054 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 1113

Query: 175  MLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALT 234
              +DAEHA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALT
Sbjct: 1114 AFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173

Query: 235  PRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTS 294
            P+AEIEGEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+
Sbjct: 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 1233

Query: 295  GGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354
            GG ALKF+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG+
Sbjct: 1234 GGNALKFYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 1291

Query: 355  SKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS 414
            +  G ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++ 
Sbjct: 1292 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 1351

Query: 415  DGSVHQGSFLRNVSLPNQEEN 435
                       ++S      +
Sbjct: 1352 SNPNSTTGSTGSMSGRTGSMS 1372

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  473 bits (1220), Expect = e-153
 Identities = 164/315 (52%), Positives = 222/315 (70%), Gaps = 3/315 (0%)

Query: 122 VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
           VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DAE
Sbjct: 12  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71

Query: 181 HAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240
           HA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEIE
Sbjct: 72  HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131

Query: 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300
           GEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG ALK
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191

Query: 301 FFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCM 360
           F+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG++  G +
Sbjct: 192 FYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249

Query: 361 LDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQ 420
           +D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++       
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNST 309

Query: 421 GSFLRNVSLPNQEEN 435
                + +  +    
Sbjct: 310 TGSTGSGTTGSTGSM 324

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  510 bits (1315), Expect = e-165
 Identities = 181/380 (47%), Positives = 247/380 (65%), Gaps = 3/380 (0%)

Query: 61  ARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGA 120
                   S           S    +   ++Q+AL AA+  I   FGKGS+ RLG     
Sbjct: 300 ELLLSNPNSTTGSTGSGTTGSTGSMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM 359

Query: 121 LVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179
            VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DA
Sbjct: 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419

Query: 180 EHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEI 239
           EHA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEI
Sbjct: 420 EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 479

Query: 240 EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299
           EGEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG AL
Sbjct: 480 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 539

Query: 300 KFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359
           KF+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG++  G 
Sbjct: 540 KFYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 597

Query: 360 MLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVH 419
           ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++      
Sbjct: 598 LVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 657

Query: 420 QGSFLRNVSLPNQEENILEE 439
                 ++       + ++E
Sbjct: 658 TTGSTGSMGHTTGAMSAIDE 677

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  509 bits (1314), Expect = e-165
 Identities = 180/376 (47%), Positives = 248/376 (65%), Gaps = 3/376 (0%)

Query: 61   ARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGA 120
                    S        G ++ +  +   ++Q+AL AA+  I   FGKGS+ RLG     
Sbjct: 649  ELLLSNPNSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM 708

Query: 121  LVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179
             VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DA
Sbjct: 709  DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768

Query: 180  EHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEI 239
            EHA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEI
Sbjct: 769  EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 828

Query: 240  EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299
            EGEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG AL
Sbjct: 829  EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 888

Query: 300  KFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359
            KF+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG++  G 
Sbjct: 889  KFYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 946

Query: 360  MLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVH 419
            ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++      
Sbjct: 947  LVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 1006

Query: 420  QGSFLRNVSLPNQEEN 435
                  +++      +
Sbjct: 1007 TTGSTGSMASTGSTGS 1022

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  507 bits (1307), Expect = e-164
 Identities = 181/376 (48%), Positives = 246/376 (65%), Gaps = 3/376 (0%)

Query: 61   ARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGA 120
                    S          +  +G +   ++Q+AL AA+  I   FGKGS+ RLG     
Sbjct: 998  ELLLSNPNSTTGSTGSMASTGSTGSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM 1057

Query: 121  LVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179
             VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G     +DA
Sbjct: 1058 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 1117

Query: 180  EHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEI 239
            EHA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEI
Sbjct: 1118 EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 1177

Query: 240  EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299
            EGEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE T+GG AL
Sbjct: 1178 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 1237

Query: 300  KFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359
            KF+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GEG++  G 
Sbjct: 1238 KFYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 1295

Query: 360  MLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVH 419
            ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++      
Sbjct: 1296 LVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 1355

Query: 420  QGSFLRNVSLPNQEEN 435
                   +S      +
Sbjct: 1356 TTGATGAMSGRMSAID 1371

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  506 bits (1305), Expect = e-163
 Identities = 179/347 (51%), Positives = 240/347 (69%), Gaps = 3/347 (0%)

Query: 90   DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
            ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI
Sbjct: 1373 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 1432

Query: 149  FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
            +GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE 
Sbjct: 1433 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1492

Query: 209  ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
            ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  +
Sbjct: 1493 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1552

Query: 269  AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
            +   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K  +G+  VG   
Sbjct: 1553 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSET 1610

Query: 329  RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
            RV+V K+K++ P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  +++GQG+
Sbjct: 1611 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1670

Query: 389  DKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEEN 435
              A  +L+DNP   +EIEK VR ++            + S       
Sbjct: 1671 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSGSSTGSMSA 1717

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  503 bits (1297), Expect = e-162
 Identities = 178/333 (53%), Positives = 239/333 (71%), Gaps = 3/333 (0%)

Query: 85   DSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKG 143
             +   ++Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP G
Sbjct: 1716 SAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 1775

Query: 144  RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQP 203
            RIVEI+GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QP
Sbjct: 1776 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 1835

Query: 204  DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS 263
            D GE ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++
Sbjct: 1836 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1895

Query: 264  GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDED 323
            GN  ++   LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K  +G+  
Sbjct: 1896 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENV 1953

Query: 324  VGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQR 383
            VG   RV+V K+K++ P+KQAEF+I++GEG++  G ++D      ++ + GAWYSY  ++
Sbjct: 1954 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 2013

Query: 384  LGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDG 416
            +GQG+  A  +L+DNP   +EIEK VR ++   
Sbjct: 2014 IGQGKANATAWLKDNPETAKEIEKKVRELLLSN 2046

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  476 bits (1227), Expect = e-153
 Identities = 165/323 (51%), Positives = 224/323 (69%), Gaps = 3/323 (0%)

Query: 114 LGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG 172
           +G      VET  +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IA  Q+ G 
Sbjct: 4   MGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 63

Query: 173 NAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSA 232
               +DAEHA DP Y++ LGVD++NL+  QPD GE ALEI D + RSGA+D+I VDSV+A
Sbjct: 64  TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 123

Query: 233 LTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEV 292
           LTP+AEIEGEIG   +GL AR+MSQA+RK++GN  ++   LIF+NQIR KIGV +GNPE 
Sbjct: 124 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 183

Query: 293 TSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGE 352
           T+GG ALKF+ASVRL+IR  G +K  +G+  VG   RV+V K+K++ P+KQAEF+I++GE
Sbjct: 184 TTGGNALKFYASVRLDIRRIGAVK--EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 241

Query: 353 GVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSM 412
           G++  G ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR +
Sbjct: 242 GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVREL 301

Query: 413 MSDGSVHQGSFLRNVSLPNQEEN 435
           +            + +  +    
Sbjct: 302 LLSNPNSTTGSTGSGTTGSTGSM 324

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Length = 333

 Score =  385 bits (990), Expect = e-133
 Identities = 57/335 (17%), Positives = 136/335 (40%), Gaps = 20/335 (5%)

Query: 119 GALVETFPSGCLTLDLALG----GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK--LGG 172
           G+ ++   +    +++AL     GG+  G ++ + GP  S K+   L  ++   +     
Sbjct: 1   GSHMDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDA 59

Query: 173 NAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE-MALEIADRMC--RSGAIDLICVDS 229
             +  D+E    P+Y +++GVD E +I     + E + +++ +++     G   ++ +DS
Sbjct: 60  VCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDS 119

Query: 230 VSALTPRAEIEGEIGMQQIG--LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287
           +  L  + E E  +  + +    +A+ M    R ++   S      I +N       ++ 
Sbjct: 120 LGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMF- 178

Query: 288 GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFE 347
              +   GG     +++  + I    +IK   G +  G +  + V+KS+  +   +   +
Sbjct: 179 --SKTVMGGGTGPMYSADTVFIIGKRQIK--DGSDLQGYQFVLNVEKSRTVKEKSKFFID 234

Query: 348 IIFGEGVSKLGCMLDCAEMMDIVVRK-GAWYS--YGDQRLGQGRDKALQYLRDNPLLQEE 404
           + F  G+     +LD A  +  VV+    WY+  + D+  G+   +   +   +      
Sbjct: 235 VKFDGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETGEMIREEKSWRAKDTNCTTF 294

Query: 405 IEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEE 439
              + +      ++ +   L  +      E  ++E
Sbjct: 295 WGPLFKHQPFRDAIKRAYQLGAIDSNEIVEAEVDE 329

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Length = 324

 Score =  211 bits (538), Expect = 4e-65
 Identities = 67/283 (23%), Positives = 120/283 (42%), Gaps = 38/283 (13%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
             Q+ +  A + ++  F      +        V+   +G   LD  L GG+    + E F
Sbjct: 57  TAQKIIKEARDALDIRFKTALEVKKERMN---VKKISTGSQALDGLLAGGIETRTMTEFF 113

Query: 150 GPESSGKTTLALHAIAEVQ------KLGGNAMLVDAEHAFDP----SYSKALGVDVE--- 196
           G   SGKT L       VQ       L G A+ +D E  F      + +KALG+D++   
Sbjct: 114 GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVM 173

Query: 197 -NLIVCQPDNGEMALEIADR----MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQ 251
            N+   +  N +  + I D     + +  +I LI VDSV++   RAE  G    + + ++
Sbjct: 174 NNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH-FRAEYPGR---ENLAVR 229

Query: 252 ARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS 311
            + +++ L +++  A      +I  NQ+  +  ++YG+P V  GG  L     +R++++ 
Sbjct: 230 QQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289

Query: 312 TGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354
           +            G R   RV  +    P  +  F  +  EG+
Sbjct: 290 SR-----------GNRRIARVVDAP-HLPEGEVVF-ALTEEGI 319

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Length = 343

 Score =  196 bits (500), Expect = 3e-59
 Identities = 59/289 (20%), Positives = 107/289 (37%), Gaps = 40/289 (13%)

Query: 93  RALDAAMNDINSSFGKGSVTRLG-SAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGP 151
             +D      N     G +T    S    +V    +G    D  LGGG+    I E FG 
Sbjct: 71  AKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 130

Query: 152 ESSGKTTLALHAIAEVQ------KLGGNAMLVDAEHAFDPSY----SKALGVDVE----N 197
             +GKT L+       Q        GG  + +D E+ F P      +    VD +    N
Sbjct: 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 190

Query: 198 LIVCQPDNGEMALEIADRMC-----RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQA 252
           ++  +    E  +E+ D +       +G   L+ +DS+ AL  R +  G     ++  + 
Sbjct: 191 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF-RVDFSGR---GELAERQ 246

Query: 253 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV---YYGNPEVTSGGIALKFFASVRLEI 309
           + ++Q L ++   + +    +   NQ+    G    +  +P+   GG  L   ++ R+ +
Sbjct: 247 QKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISL 306

Query: 310 RSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358
           R               +R+  ++  S    P  +A F I    G+    
Sbjct: 307 RKGRG----------ELRI-AKIYDS-PEMPENEATFAIT-AGGIGDAK 342

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Length = 400

 Score =  180 bits (457), Expect = 2e-52
 Identities = 59/286 (20%), Positives = 108/286 (37%), Gaps = 40/286 (13%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149
              + L+ A   +   F   +   +  +    +    +G   LD  LGGG+  G I E+F
Sbjct: 128 KADKLLNEAARLVPMGFVTAADFHMRRSE---LICLTTGSKNLDTLLGGGVETGSITELF 184

Query: 150 GPESSGKTTLALHAIAEVQ------KLGGNAMLVDAEHAFDP----SYSKALGVDVENLI 199
           G   +GK+ L        Q         G  + +D E  F P    S ++  G+D ++ +
Sbjct: 185 GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDAL 244

Query: 200 -------VCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQA 252
                      D+    L+ A +M       LI VDSV AL  R +  G   +     + 
Sbjct: 245 NNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMAL-YRTDFSGRGEL---SARQ 300

Query: 253 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIG---VYYGNPEVTSGGIALKFFASVRLEI 309
             +++ +R +   A + G  ++  NQ+  ++     +  +P+   GG  + + ++ RL  
Sbjct: 301 MHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGF 360

Query: 310 RSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355
           +              G +   +V  S    P  +  F I   +GV 
Sbjct: 361 KKGK-----------GCQRLCKVVDSP-CLPEAECVFAIY-EDGVG 393

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Length = 349

 Score =  177 bits (449), Expect = 8e-52
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 41/286 (14%)

Query: 93  RALDAAMNDINSSFGKGSVTRLG--SAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFG 150
                 +     +   G+  R        A +    +G  +LD  LGGG+    I E+FG
Sbjct: 79  GTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFG 138

Query: 151 PESSGKTTLALHAIAEVQ------KLGGNAMLVDAEHAFDPS----YSKALGVDVE---- 196
              SGKT LA      VQ       L G+ + +D E+ F P      ++  G+D +    
Sbjct: 139 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK 198

Query: 197 NLIVCQPDNGEMAL--------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQI 248
           ++ V +  N    +        +I + +     + L+ VDS+++          IG   +
Sbjct: 199 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH----FRSEYIGRGAL 254

Query: 249 GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE 308
             + + +++ L  +   A+     +   NQ++ +   ++G+P    GG  L   A++R+ 
Sbjct: 255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314

Query: 309 IRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354
           +R              G +   R+  +    P  +A F I   +G+
Sbjct: 315 LRKGK-----------GGKRIARLIDAP-HLPEGEAVFSIT-EKGI 347

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Length = 243

 Score =  169 bits (429), Expect = 4e-50
 Identities = 55/254 (21%), Positives = 98/254 (38%), Gaps = 37/254 (14%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------KLGGNAM 175
           +    +G   LD  L GG+  G I E+FG   +GKT +        Q         G AM
Sbjct: 3   IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAM 62

Query: 176 LVDAEHAFDPS----YSKALGVDVENLI-------VCQPDNGEMALEIADRMCRSGAIDL 224
            +D E  F P      ++  G+   +++           D+    L  A  M       L
Sbjct: 63  YIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYAL 122

Query: 225 ICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284
           + VDS +AL  R +  G     ++  +   +++ LR +   A + G  ++  NQ+  ++ 
Sbjct: 123 LIVDSATALY-RTDYSGR---GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178

Query: 285 ---VYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 341
              ++  +P+   GG  +   ++ RL +R                R+  ++  S    P 
Sbjct: 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGRG----------ETRI-CKIYDS-PCLPE 226

Query: 342 KQAEFEIIFGEGVS 355
            +A F I   +GV 
Sbjct: 227 AEAMFAIN-ADGVG 239

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Length = 322

 Score =  167 bits (425), Expect = 1e-48
 Identities = 57/291 (19%), Positives = 106/291 (36%), Gaps = 48/291 (16%)

Query: 92  QRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGP 151
            + +  A +  +  F  G       +    V    +    LD  LGGGL    + E  G 
Sbjct: 50  AKMIMGARDLCDLGFKSGIDLLKQRST---VWKLSTSSSELDSVLGGGLESQSVTEFAGV 106

Query: 152 ESSGKTTLALHAIAEVQK----------------LGGNAMLVDAEHAFDPS----YSKAL 191
             SGKT +   +   +Q                     A+ +D E  F P      ++  
Sbjct: 107 FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166

Query: 192 GVDVE----NLIVCQPDNGEMALEIADR----MCRSGAIDLICVDSVSALTPRAEIEGEI 243
           G+D +    N  V +  N +M +  A++    +     I L+ +DS+++   R E  G  
Sbjct: 167 GIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST-FRNEYTGR- 224

Query: 244 GMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303
              ++  + + + + +  ++  A    C ++  NQ+  K   ++G  E   GG  +   A
Sbjct: 225 --GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAA 282

Query: 304 SVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354
           + R  +R                RV  ++  S    P  +A F I   +G+
Sbjct: 283 TFRFFVRKGKG----------DKRV-AKLYDSP-HLPDAEAIFRIT-EKGI 320

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Length = 220

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 34/221 (15%)

Query: 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD 184
             +G  +LD  LGGG   G + +++GP +SGKTTLAL         G     VD E  F 
Sbjct: 2   LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFS 58

Query: 185 PSY----SKALGVDVE----NLIVCQPDNGEMALEIAD--RMCRSGAIDLICVDSVSALT 234
           P      ++  G++ E      I+  P + +    +    +        L+ VDS++A  
Sbjct: 59  PERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118

Query: 235 PRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTS 294
            RAE      + ++  Q +     L  +   A K    +I +NQ+ +        P    
Sbjct: 119 -RAEENRSGLIAELSRQLQ----VLLWI---ARKHNIPVIVINQVHFDSRTEMTKP---V 167

Query: 295 GGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKS 335
               L +     L +               G+RV   +++ 
Sbjct: 168 AEQTLGYRCKDILRLD---------KLPKPGLRV-AVLERH 198

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 41/195 (21%), Positives = 61/195 (31%), Gaps = 29/195 (14%)

Query: 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183
              SG + LD   GGG  K  I+   G   +GKT L    +         A+L   E + 
Sbjct: 262 RVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR 321

Query: 184 D--PSYSKALGVDVENL-------IVCQPDNG---EMALEIADRMCRSGAIDLICVDSVS 231
                 + + G+D E +       IVC        E  L+I            I +DS+S
Sbjct: 322 AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLS 381

Query: 232 ALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPE 291
           AL                   R     +      A +   T +F N     +G +     
Sbjct: 382 ALARGVSNN----------AFRQFVIGVTGY---AKQEEITGLFTNTSDQFMGAHSITDS 428

Query: 292 VTS----GGIALKFF 302
             S      I L++ 
Sbjct: 429 HISTITDTIILLQYV 443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 37/291 (12%), Positives = 84/291 (28%), Gaps = 56/291 (19%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAE-VQKLGGNAMLVDAE 180
           +    +     D    GGLP GR   + G   +GKT  ++  +   + +     + V  E
Sbjct: 18  IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77

Query: 181 HAFD--PSYSKALGVDVENLI------------------VCQPDNGEMALEIADRMCRSG 220
                    +++ G D+  L+                  V    +    +E  +   +  
Sbjct: 78  ETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKY 137

Query: 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280
               + +DSV+++    + +            R     L        + G T +   +  
Sbjct: 138 RARRVSIDSVTSV--FQQYDAS-------SVVRRELFRLVAR---LKQIGATTVMTTERI 185

Query: 281 YKIGVY--YGNPE-VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKV 337
            + G    YG  E V+   + L+                    + +   R  + + K + 
Sbjct: 186 EEYGPIARYGVEEFVSDNVVILRN-----------------VLEGERRRR-TLEILKLR- 226

Query: 338 SRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYG-DQRLGQG 387
              + + E+     +    +  +            + +      D+  G G
Sbjct: 227 GTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGG 277

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 49/263 (18%), Positives = 91/263 (34%), Gaps = 63/263 (23%)

Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
           +V    +G L  D  + GG+P+G  + + G   +GKT  +LH IA+  + G   + V  E
Sbjct: 1   MVSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60

Query: 181 HAFDPSYSKA--LGVDVENLI-------------------VCQPDNGEMALEIADRMCRS 219
            + D    +A     D E  I                   +      E+  ++ +   + 
Sbjct: 61  ESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKL 120

Query: 220 GA-IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ 278
           G     + +DSVSAL                  AR +S  L+++    +K   T+   +Q
Sbjct: 121 GYGKARLVIDSVSALFLDKP-----------AMARKISYYLKRV---LNKWNFTIYATSQ 166

Query: 279 IRYKIGVYYGNPEVTSGGIALKFFAS--VRLEIRSTGKIKSVKGDEDVGVRVR-VRVQK- 334
                          + G  ++  A   +R                  G   R + ++K 
Sbjct: 167 Y--------AITTSQAFGFGVEHVADGIIRFR-----------RMIRNGELHRYILIEKM 207

Query: 335 --SKVSRPYKQAEFEIIFGEGVS 355
             +   +     E +I+ G+G+ 
Sbjct: 208 RQTDHDKHVW--EIDIVNGKGIV 228

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 4e-10
 Identities = 69/393 (17%), Positives = 112/393 (28%), Gaps = 122/393 (31%)

Query: 83  SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPK 142
           S  +R    QR  D   ND N  F K +V+RL        + +    L L  AL   L  
Sbjct: 106 SMMTRMYIEQR--DRLYND-NQVFAKYNVSRL--------QPY----LKLRQALLE-LRP 149

Query: 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQ 202
            + V I G   SGKT +A     +V         +  +                  + C+
Sbjct: 150 AKNVLIDGVLGSGKTWVA----LDV--------CLSYK------------------VQCK 179

Query: 203 PDNGEMALEIADRMCRSGAIDL-----ICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQ 257
            D     L + +  C S    L     +        T R++         I L+   +  
Sbjct: 180 MDFKIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQA 232

Query: 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKS 317
            LR++  +     C L+ LN       V   N +          F ++  +I  T + K 
Sbjct: 233 ELRRLLKSKPYENCLLVLLN-------VQ--NAKA------WNAF-NLSCKILLTTRFKQ 276

Query: 318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLD--------------- 362
           V   + +       +     S      E + +       L C                  
Sbjct: 277 VT--DFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLS 331

Query: 363 -CAEMM-DIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQ 420
             AE + D +     W      +L    + +L  L   P    E     R M    SV  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EP---AEY----RKMFDRLSV-- 380

Query: 421 GSFLRNVSLPNQ-------------EENILEEF 440
             F  +  +P                  ++ + 
Sbjct: 381 --FPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 70/518 (13%), Positives = 135/518 (26%), Gaps = 162/518 (31%)

Query: 23  FSPFN-------MKTHSCLLSISSSP---LH----CQSSRSRFFTASSKLSAARKRDKKI 68
           F+ +N       +K    LL +  +    +                 + ++       K+
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---------GKTWVALDVCLSYKV 176

Query: 69  SCEFDGKVN--GFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVT---RLGSAGGALVE 123
            C+ D K+      + +     L+  + L   ++   +S    S     R+ S    L  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 124 TF-----PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV-QKLGGNAM-- 175
                   +  L L       +   +    F         L      +V   L       
Sbjct: 237 LLKSKPYENCLLVLL-----NVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTH 288

Query: 176 --LVDAEHAFDPSYS-----KALGVDVENL--IVCQ--PDNGEMAL-----EIADRMCR- 218
             L        P        K L    ++L   V    P      L      I D +   
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAESIRDGLATW 344

Query: 219 -----------SGAIDLICVDSVSALTPRAEIEG------------EIGMQQIGL----- 250
                      +  I+     S++ L P AE                I    + L     
Sbjct: 345 DNWKHVNCDKLTTIIES----SLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 251 ---QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRL 307
                 ++   L K S         L+        I +                  S+ L
Sbjct: 400 IKSDVMVVVNKLHKYS---------LVEKQPKESTISIP-----------------SIYL 433

Query: 308 EIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEG--VSKLGCMLDCAE 365
           E++       VK + +  +   + V    + + +   +    + +    S +G  L   E
Sbjct: 434 ELK-------VKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 366 MMD------------------IVVRKGAWYSYGDQR--LGQGRDKALQYLRDN-PLLQEE 404
             +                  I     AW + G     L Q +     Y+ DN P  +  
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERL 544

Query: 405 IEKVVRSMMSDGS-VHQGSFLR--NVSLPNQEENILEE 439
           +  ++  +      +    +     ++L  ++E I EE
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Length = 247

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 43/188 (22%)

Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
           +     +G   +D  L GG+P+  +V + G   +GKT  +   +    K+G   + V  E
Sbjct: 1   MTRRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60

Query: 181 HAFDPSYSKA--LGVDVENLI--------------------------VCQPDNGEMALEI 212
                        G DV+                                 D  E    +
Sbjct: 61  EHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL 120

Query: 213 ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCT 272
              +    A  ++ VDSV+ L                  AR +   L+++    +  GCT
Sbjct: 121 RQAIRDINAKRVV-VDSVTTLYINKP-----------AMARSIILQLKRV---LAGTGCT 165

Query: 273 LIFLNQIR 280
            IF++Q+ 
Sbjct: 166 SIFVSQVS 173

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Length = 260

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 2/78 (2%)

Query: 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183
           +       LD  +G       I+      SS    +  + ++   K      +    +  
Sbjct: 2   SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL 61

Query: 184 DPSYS--KALGVDVENLI 199
                     GVDV   +
Sbjct: 62  QLIIRILSRFGVDVIKYL 79

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 47/243 (19%)

Query: 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEV----------QKLGGNAMLVDAE------- 180
             +  G +  +  P  +GK+ LAL   A++          +   G  + + AE       
Sbjct: 25  PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIH 84

Query: 181 --------HAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSA 232
                   H             +   ++    N             +    L+ +D++  
Sbjct: 85  HRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRR 144

Query: 233 LTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEV 292
                E             +  M+Q + +M   A+  GC+++FL+    K     G  + 
Sbjct: 145 FHIEEENA-----------SGPMAQVIGRMEAIAADTGCSIVFLHHAS-KGAAMMGAGDQ 192

Query: 293 ---TSGGIALKFFASVRLEI-----RSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQA 344
              + G   L    ++R +       S    +    D+     VR  V K+    P+   
Sbjct: 193 QQASRGSSVLV--DNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADR 250

Query: 345 EFE 347
            F 
Sbjct: 251 WFR 253

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	100.0
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	100.0
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	100.0
1xp8_A	366	RECA protein, recombinase A; recombination, radior	100.0
1u94_A	356	RECA protein, recombinase A; homologous recombinat	100.0
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	100.0
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	100.0
3io5_A	333	Recombination and repair protein; storage dimer, i	100.0
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	100.0
2z43_A	324	DNA repair and recombination protein RADA; archaea	99.97
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	99.97
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	99.97
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	99.95
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.95
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.95
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	99.95
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.94
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.94
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	99.93
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	99.92
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.92
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	99.91
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.91
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.91
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	99.88
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.85
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.84
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.81
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.75
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.73
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	99.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.55
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	99.52
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.48
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.41
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.39
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.36
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.35
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.34
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.33
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.33
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.32
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.31
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.31
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.3
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.3
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.29
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.29
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.28
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.28
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.26
1g6h_A	257	High-affinity branched-chain amino acid transport	99.26
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.26
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.19
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.19
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.19
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.17
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.15
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.14
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.12
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.11
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.1
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.05
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.02
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.0
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.91
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.89
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.88
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.88
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.86
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.82
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.82
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.81
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.81
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.79
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.78
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.77
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.72
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.65
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.61
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.57
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.5
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.5
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.47
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.47
2og2_A	359	Putative signal recognition particle receptor; nuc	98.44
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.43
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.41
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.41
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.4
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.38
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.38
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.37
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.36
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.34
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.3
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.28
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.22
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.2
1oft_A	161	SULA, hypothetical protein PA3008; bacterial cell	98.17
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.16
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	98.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.14
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	98.13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.12
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.07
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.04
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.99
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.97
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.91
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.89
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.87
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.86
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.84
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.84
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.84
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.83
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.82
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.82
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.81
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.79
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.79
3bos_A	242	Putative DNA replication factor; P-loop containing	97.79
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.76
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.74
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.74
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.73
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.72
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.72
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.69
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.68
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.67
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.66
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.66
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.66
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.66
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.66
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	97.64
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.64
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.64
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.63
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.63
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.62
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.6
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.6
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.59
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.52
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.51
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.5
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.49
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.47
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.43
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.43
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.43
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.42
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.41
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.4
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.4
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.39
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.38
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.38
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.37
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.36
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.36
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.36
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.34
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.34
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.32
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.3
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.28
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.26
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.25
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.24
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.23
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.21
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.21
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.16
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.14
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.12
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.12
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.12
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.1
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.09
2xxa_A	433	Signal recognition particle protein; protein trans	97.09
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.09
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.06
3ice_A	422	Transcription termination factor RHO; transcriptio	97.05
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.05
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.04
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.02
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.01
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.0
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.98
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.98
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.97
3end_A	307	Light-independent protochlorophyllide reductase ir	96.97
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.95
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.95
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.93
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.92
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.91
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.91
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.9
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.89
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.87
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.85
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.84
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.84
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.83
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.83
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.82
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.81
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.81
4a8j_A	361	Elongator complex protein 4; transcription; 2.10A	96.77
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.76
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.75
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.74
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.73
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.72
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.72
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.69
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	96.69
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.62
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	96.62
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	96.62
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.59
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.58
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.57
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	96.57
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.57
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.57
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	96.56
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.55
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	96.54
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.52
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.5
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.47
1ofu_X	119	SULA, hypothetical protein PA3008; bacterial cell	96.46
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.46
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.46
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	96.45
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.45
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.43
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	96.42
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.37
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.36
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.35
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.34
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	96.32
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.31
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	96.31
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	96.3
3l0o_A	427	Transcription termination factor RHO; helicase, RH	96.3
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.26
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.24
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.21
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.2
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	96.19
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	96.18
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.16
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.16
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.12
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.05
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	96.04
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.04
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.03
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.03
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.02
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.0
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	95.99
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.99
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.99
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.98
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.96
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.95
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	95.92
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.91
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.9
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.88
3co5_A	143	Putative two-component system transcriptional RES	95.88
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.88
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.88
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.84
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.83
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.82
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	95.81
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.81
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.8
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.79
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.76
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.75
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.71
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.71
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.7
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.7
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.68
2fna_A	357	Conserved hypothetical protein; structural genomic	95.67
3pvs_A	447	Replication-associated recombination protein A; ma	95.67
2qgz_A	308	Helicase loader, putative primosome component; str	95.66
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.64
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	95.62
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.62
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.59
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.58
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.55
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.52
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.51
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.5
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.43
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.42
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.41
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.41
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.39
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.39
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.39
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.39
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.38
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.34
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	95.33
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.32
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.32
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	95.29
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.25
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.23
3igf_A	374	ALL4481 protein; two-domained protein consisting o	95.23
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.22
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.2
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.2
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.18
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.18
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.05
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.05
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.02
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.99
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.97
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.97
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.9
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.86
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	94.85
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	94.84
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.82
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.8
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.78
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.78
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.73
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.72
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.71
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.71
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.67
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.64
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.62
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.62
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.61
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	94.59
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.57
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	94.56
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.53
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.53
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.53
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.53
1via_A	175	Shikimate kinase; structural genomics, transferase	94.51
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.5
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.46
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.44
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.43
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.41
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.39
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	94.37
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.35
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.35
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	94.34
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	94.33
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.3
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.26
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	94.21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	94.18
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	94.16
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.15
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.14
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.11
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.09
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.08
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.07
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.02
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.02
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.02
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.0
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.99
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.96
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.93
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.91
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	93.88
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.86
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.85
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.81
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	93.78
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	93.76
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.75
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.73
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	93.72
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.69
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.66
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.65
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.64
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.64
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	93.59
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	93.58
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	93.54
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	93.51
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.5
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	93.49
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	93.48
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	93.46
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.39
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.36
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.36
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	93.31
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	93.21
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.21
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.2
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.09
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.02
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.98
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	92.91
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	92.9
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.88
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	92.86
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	92.84
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	92.82
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	92.79
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	92.76
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	92.67
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.63
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.63
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.58
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	92.53
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	92.39
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	92.38
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.33
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	92.32
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	92.3
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	92.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.26
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	92.04
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	92.03
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	92.0
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	91.99
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	91.92
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	91.79
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	91.77
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.76
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	91.69
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	91.64
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	91.46
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	91.35
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	91.34
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	91.33
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	91.26
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	90.98
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	90.82
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	90.8
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.65
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	90.59
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.49
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	90.45
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	90.37
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	90.31
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	90.26
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	90.22
2r44_A	331	Uncharacterized protein; putative ATPase, structur	90.2
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	90.19
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.19
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	90.04
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	89.99
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	89.97
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	89.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	89.86
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	89.61
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	89.57
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	89.53
2ged_A	193	SR-beta, signal recognition particle receptor beta	89.51
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	89.51
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	89.48
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	89.45
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	89.41
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	89.36

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=100.00  E-value=8.1e-65  Score=592.93  Aligned_cols=324  Identities=55%  Similarity=0.928  Sum_probs=303.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++.++|+.++.+|+++||+|++|++++.....++.||||+..||.+|| ||+|+|++++|+||.+||||||||++++.+
T Consensus      1720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A         1720 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp             TTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcCCcceEECCCCcccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence            3799999999999999999999999998767789999999999999999 999999999999999999999999999999


Q ss_pred             hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567          168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ  247 (440)
Q Consensus       168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q  247 (440)
                      ++.++-|+|||.|+.+++.|++++|++.+++++.+|++.|+.+++++.+++++.+++|||||++++.|+++++++||+.+
T Consensus      1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A         1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp             HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred             hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      ++.|||+|+++||+|...+.+.+|+||||||+|+++|.|||+|++++||++++||+++|+.+||.+.+|  ++++++|++
T Consensus      1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~gg~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~ 1957 (2050)
T 3cmu_A         1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 1957 (2050)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC--------CCCCCSSHHHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHhccccCCCCCcCCcchhheeeeeeeeeeeecccc--cCCeeeeeE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999  788999999


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK  407 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~  407 (440)
                      ++++|+|||++|||+.++|+|+|++||++.++|+|+|++.+++.|+|+||+|+++++|||++++++||++||++.+||++
T Consensus      1958 ~~~~~~k~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2037 (2050)
T 3cmu_A         1958 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 2037 (2050)
T ss_dssp             EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEEEEEecCCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEeeeeEEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 013567          408 VVRSMMS  414 (440)
Q Consensus       408 ~~~~~~~  414 (440)
                      ++|+++.
T Consensus      2038 ~~~~~~~ 2044 (2050)
T 3cmu_A         2038 KVRELLL 2044 (2050)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999863

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=100.00  E-value=8.2e-63  Score=571.54  Aligned_cols=324  Identities=55%  Similarity=0.928  Sum_probs=302.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++.++|..++.+|+++||+|++|++++.....++.||||++.||.+|| ||+|+|++++|+||+||||||||+++++.+
T Consensus      1376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A         1376 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCccEEECCCCCCCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999999999998766789999999999999998 799999999999999999999999999999


Q ss_pred             hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567          168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ  247 (440)
Q Consensus       168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q  247 (440)
                      ++.++.|+||+.|+++++.+++.+|++++++++.+|++.|+.+++++.+++++.+++|||||++++.|+.++++++|+.+
T Consensus      1456 ~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~ 1535 (1706)
T 3cmw_A         1456 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1535 (1706)
T ss_dssp             HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------
T ss_pred             HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      ++.|+|.|+++|++|...+++.+|++|||||+++++|.|||+|++++||++++||+++|+.+||.+.+|  ++++++|++
T Consensus      1536 ~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~al~~~~~~r~~~~~~~~~~--~~~~~~~~~ 1613 (1706)
T 3cmw_A         1536 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 1613 (1706)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC--------CCCCBSSCSHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccceecCCCccccCcceeeeeeeeeeeeeeccccc--cCCeeEeeE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999  788999999


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK  407 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~  407 (440)
                      ++++|+|||++|||+.++|+|+|++||++.++|+|+|++.+++.|+|+||+|+++++|||++++++||++||++.+||++
T Consensus      1614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1693 (1706)
T 3cmw_A         1614 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1693 (1706)
T ss_dssp             EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEEEEecccCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEEeeeeEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 013567          408 VVRSMMS  414 (440)
Q Consensus       408 ~~~~~~~  414 (440)
                      ++|+++.
T Consensus      1694 ~~~~~~~ 1700 (1706)
T 3cmw_A         1694 KVRELLL 1700 (1706)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999873

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-60  Score=481.82  Aligned_cols=327  Identities=52%  Similarity=0.864  Sum_probs=310.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCC-ccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567           88 FLDRQRALDAAMNDINSSFGKGSVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus        88 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ..++.++|+.++.+|+++||++.++++++..... +.++|||++.||.+|+ |||++|++++|+||||+||||||++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~   83 (356)
T 3hr8_A            4 EKQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA   83 (356)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999999998877666 8999999999999999 9999999999999999999999999999


Q ss_pred             HHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchh
Q 013567          166 EVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGM  245 (440)
Q Consensus       166 ~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~  245 (440)
                      .++..++.++||++|+.+++.+++++|++++++.+..+.+.+++++.++.+++...++++||||++.+++..++++++|+
T Consensus        84 ~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~  163 (356)
T 3hr8_A           84 EAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD  163 (356)
T ss_dssp             HHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred             HHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence            99988889999999999999999999999999999999999999999999888889999999999999987889988899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccc
Q 013567          246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG  325 (440)
Q Consensus       246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G  325 (440)
                      .+++.++|.++++++.|..++++.+++||++||++++++.+|++++.++||++|+|++++|+.+++.+.+|  ++++..|
T Consensus       164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k--~g~~~~g  241 (356)
T 3hr8_A          164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIK--EGKDVIG  241 (356)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEE--ETTEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccc--cCCcccc
Confidence            88889999999999999999999999999999999999999999999999999999999999999988888  6777789


Q ss_pred             eEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEe-----CceeccccHHHHHHHHHhCcH
Q 013567          326 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSY-----GDQRLGQGRDKALQYLRDNPL  400 (440)
Q Consensus       326 ~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~-----~~~~~gq~~~~~~~~L~e~~~  400 (440)
                      +.++++++|||++||+..++|+|+|++||+++++++|+|+++|+|.|+|+||+|     +++++|||++++++||++||+
T Consensus       242 ~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~w~~~~~~~~~~~~~~~g~~~~~~~l~~~~~  321 (356)
T 3hr8_A          242 NVISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSLGQGSSNAVQFLKDNPE  321 (356)
T ss_dssp             EEEEEEEEEESSSCCCCEEEEEEETTTBSCHHHHHHHHHHHTTSSEEETTEEEEECTTSCEEEEEEHHHHHHHHHHHCHH
T ss_pred             cEEEEEEEeCCCCCCCceEEEEEeeCCCcChhccHHHHHHHcChhhccCcEEEEEccCCCceeeccCHHHHHHHHHHCHH
Confidence            999999999999999999999999999999999999999999999999999999     999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCC
Q 013567          401 LQEEIEKVVRSMMSDG  416 (440)
Q Consensus       401 ~~~ei~~~~~~~~~~~  416 (440)
                      +++||++++|+++..+
T Consensus       322 ~~~~~~~~~~~~~~~~  337 (356)
T 3hr8_A          322 IAGEIERRIREKYGLL  337 (356)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999998644

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=100.00  E-value=3.5e-57  Score=459.33  Aligned_cols=345  Identities=49%  Similarity=0.861  Sum_probs=280.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567           88 FLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus        88 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+++.++|+.++++|++.|+++.+|++++.....+.++|||++.||.+|+ |||++|++++|+|+||+||||||++++.+
T Consensus        18 ~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           18 AKERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            34799999999999999999999999888777788999999999999998 89999999999999999999999999999


Q ss_pred             HhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhh
Q 013567          167 VQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQ  246 (440)
Q Consensus       167 ~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~  246 (440)
                      +++.+..|+||++|+++++.+++++|++.+++++.++.+.+++++.++.++++..+++|||||++.+.++.++++++++.
T Consensus        98 ~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~  177 (366)
T 1xp8_A           98 AQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDS  177 (366)
T ss_dssp             HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-------
T ss_pred             HHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccc
Confidence            99889999999999999999999999999999999999999999999998888899999999999998656666555554


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeeccc-ccccCCCcccc
Q 013567          247 QIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGK-IKSVKGDEDVG  325 (440)
Q Consensus       247 q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~-ik~~~g~~~~G  325 (440)
                      +.+.++|.++++++.|+.++++++++||++||+++.++.+|+++..+.||.+|+|++++|++++|... +|  .+++..|
T Consensus       178 ~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~~~~k--~~~~~~g  255 (366)
T 1xp8_A          178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTK--VGNDAVA  255 (366)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEESCCC--------CE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecchhcc--cCccccC
Confidence            44467788999999999999999999999999999998888888999999999999999999999876 77  4566678


Q ss_pred             eEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHH
Q 013567          326 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEI  405 (440)
Q Consensus       326 ~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei  405 (440)
                      +.++++|+|||..||+..++|+|+|+.||.+.++++++|++.+++.|+|+||+|+++++|||++++++||++||++++||
T Consensus       256 ~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~~~~l~~~~~~~~~~k~g~w~~~~~~~~~~g~~~~~~~l~~~~~~~~~~  335 (366)
T 1xp8_A          256 NTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEI  335 (366)
T ss_dssp             EEEEEEEEEESSSCCCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHHHHHTTCHHHHHHH
T ss_pred             CEEEEEEEcCCCCCCCceEEEEEEeCCCcccchhHHHHHHHhCeeeccCceeeECCeEecchHHHHHHHHHhCHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcc-cccccCCCCCcch
Q 013567          406 EKVVRSMMSDGSVHQG-SFLRNVSLPNQEE  434 (440)
Q Consensus       406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  434 (440)
                      ++++|+++..+....+ ...+.+.++.++|
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (366)
T 1xp8_A          336 RDRVMAAIRAGNAGEAPALAPAPAAPEAAE  365 (366)
T ss_dssp             HHHHHHHHC---------------------
T ss_pred             HHHHHHHhcCCCcccccccCccCCCccccc
Confidence            9999999877766555 4455555555443

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=100.00  E-value=2.1e-56  Score=452.17  Aligned_cols=339  Identities=53%  Similarity=0.886  Sum_probs=287.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++.++|+.++++|+++|++++++++++.....+.++|||++.||.+|+ |||++|++++|+|+||+||||||++++..+
T Consensus         8 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A            8 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             --CHHHHHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3678999999999999999999999988777788999999999999998 999999999999999999999999999999


Q ss_pred             hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567          168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ  247 (440)
Q Consensus       168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q  247 (440)
                      ++.+.+|+||++|+++++.+++++|++.+++.+.++.+.+++++.++.++++.++++||||+++.+.+..++++++++.+
T Consensus        88 ~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~  167 (356)
T 1u94_A           88 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH  167 (356)
T ss_dssp             HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC-----
T ss_pred             HHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccch
Confidence            99899999999999999988999999999999999999999999998888888999999999999987666666555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      .+.++|.++++++.|+.++++++++||++||+++.++.+|+++..+.||++|+|++++|++++|.+.+|  .+++..|++
T Consensus       168 ~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k--~g~~~~g~~  245 (356)
T 1u94_A          168 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE  245 (356)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEE--SSSSEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeec--cCccccCcE
Confidence            446678899999999999999999999999999999988888899999999999999999999988777  466677888


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK  407 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~  407 (440)
                      +.++|+|||..||+..++|+|+++.||++.+++++.|.+.+++.++|+||+|+++++||+++++++||++||++++||++
T Consensus       246 ~~~~i~K~r~~p~~~~~~f~i~~~~Gi~~~~~~l~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~  325 (356)
T 1u94_A          246 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK  325 (356)
T ss_dssp             EEEEEEEESSBCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEEEECCCccCCCCCcEEEEEEcCCCcCcCcchHHHHHHhchhcCcceeEeeCCccHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccccCCC
Q 013567          408 VVRSMMSDGSVHQGSFLRNVSL  429 (440)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~  429 (440)
                      ++|+++.......+++++.+|.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~  347 (356)
T 1u94_A          326 KVRELLLSNPNSTPDFSVDDSE  347 (356)
T ss_dssp             HHHHHHSCCC------------
T ss_pred             HHHHHhccCCCCCCCccccccc
Confidence            9999999889999999999887

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=100.00  E-value=5.8e-56  Score=518.47  Aligned_cols=339  Identities=53%  Similarity=0.878  Sum_probs=315.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++.++|+.++.+++++||++++|++++......+.+|||++.||.+|+ ||+++|++++|+||||+|||+||++++..+
T Consensus      1372 ~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A         1372 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp             TTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhcCCcceeecccccccccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999999999998777778899999999999999 999999999999999999999999999999


Q ss_pred             hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567          168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ  247 (440)
Q Consensus       168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q  247 (440)
                      ++.+..|+||+.|+.+++.+++.+|++++++.+.++.+.+++++.+++++++..+++||||++.++.|..+.++++++..
T Consensus      1452 ~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~ 1531 (2050)
T 3cmu_A         1452 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1531 (2050)
T ss_dssp             HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred             HHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998777777777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      ++.++|.|++.+++|...+++.+++||++||...+++.+|+++++++||++|+||+++|+.++|.+.+|  ++++.+|++
T Consensus      1532 ~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~~~g~~fg~~~~t~gg~al~~~~s~rl~~~~~~~~k--~~~~~~g~~ 1609 (2050)
T 3cmu_A         1532 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 1609 (2050)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEECTTCCSSCCEEESSHHHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHhCCcEEEEEccccccchhhcCCCcccCCCceeeeeeeEEEEeecccccc--cccccccce
Confidence            666788999999999999999999999999999999999999999999999999999999999999999  678899999


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK  407 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~  407 (440)
                      ++++|+|||++|||+.++|+|+|++||+..++|+|++++++++.|+|+||+|+++++|||++++++||++||++++||++
T Consensus      1610 ~~~~v~k~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1689 (2050)
T 3cmu_A         1610 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1689 (2050)
T ss_dssp             EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEEEEEEccCCCCcceeEEEEecCCccccchhHHHHHhhcCeEeccCcEEEECCcCccchHHHHHHHHHHCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccccCCC
Q 013567          408 VVRSMMSDGSVHQGSFLRNVSL  429 (440)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~  429 (440)
                      +||+++..++++.+++||++||
T Consensus      1690 ~~~~~~~~~~~~~~~~~~~~~~ 1711 (2050)
T 3cmu_A         1690 KVRELLLSNPNSTTGSTGSGSS 1711 (2050)
T ss_dssp             HHHHHHCSSCCC----------
T ss_pred             HHHHHHhcCCCCCCCcccCCCc
Confidence            9999999999999999999999

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=100.00  E-value=2.1e-54  Score=436.84  Aligned_cols=324  Identities=54%  Similarity=0.933  Sum_probs=289.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567           90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus        90 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ++.++|+.++++|+++|+++.++++++.....+.++|||++.||.+|+ |||++|++++|+||||+||||||++++..++
T Consensus         7 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A            7 DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCceeccccccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999999988777788999999999999999 9999999999999999999999999999999


Q ss_pred             hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhH
Q 013567          169 KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQI  248 (440)
Q Consensus       169 ~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~  248 (440)
                      +.+++++||++|+++++.+++++|++++++.+.++.+.+++++.++.++++.++++||||+++.+.+..++++++|+.+.
T Consensus        87 ~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~  166 (349)
T 2zr9_A           87 AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV  166 (349)
T ss_dssp             HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred             hCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence            99999999999999999889999999999999999999999999998888888999999999999976777766666544


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEE
Q 013567          249 GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV  328 (440)
Q Consensus       249 ~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~  328 (440)
                      +.++|.+++.++.|+.+++++|+|||++||++++++.+|++++.+.||++|+|++++|+++++.+.+|  .+++..|+++
T Consensus       167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k--~g~~~~g~~~  244 (349)
T 2zr9_A          167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLK--DGTDAVGNRT  244 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEEC--SSSSCCEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeee--cCccccCCEE
Confidence            46777889999999999999999999999999999888888999999999999999999999988777  4667778899


Q ss_pred             EEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHH
Q 013567          329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKV  408 (440)
Q Consensus       329 ~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~  408 (440)
                      +++|+|||..||+..++|+++++.||.+.++++++|.+.+++.++|.||+|.++++||+++++++||++||++++||+++
T Consensus       245 ~~~i~K~~~~p~~~~~~fdi~~~~Gi~~~~~~l~~g~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~~  324 (349)
T 2zr9_A          245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENTDVANEIEKK  324 (349)
T ss_dssp             EEEEEEESSSCCCCEEEEEEETTSCBCHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHHH
T ss_pred             EEEeCCCccCCCCceEEEEEEeCCCcCccccHHHHHHhhchhcCcceEEEEcCccHHhHHHHHHHHHhhCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 013567          409 VRSMMSD  415 (440)
Q Consensus       409 ~~~~~~~  415 (440)
                      +|+++.-
T Consensus       325 ~~~~~~~  331 (349)
T 2zr9_A          325 IKEKLGI  331 (349)
T ss_dssp             HHHTTCC
T ss_pred             HHHHcCC
Confidence            9998743

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=100.00  E-value=1.7e-53  Score=419.82  Aligned_cols=282  Identities=20%  Similarity=0.363  Sum_probs=223.6

Q ss_pred             ccccccCcHHHHHHhc----CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChhhhhhhcccc
Q 013567          122 VETFPSGCLTLDLALG----GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPSYSKALGVDV  195 (440)
Q Consensus       122 ~~~i~TGi~~LD~~Lg----GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~~a~~lGv~~  195 (440)
                      ++++|||++.||.+|+    ||||+| +++|+||||+||||||+|++.++++.  ++.|+|||+|+++++.+++++|++.
T Consensus         4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~   82 (333)
T 3io5_A            4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDP   82 (333)
T ss_dssp             --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCG
T ss_pred             CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCH
Confidence            5689999999999999    999999 99999999999999999999999986  7899999999999999999999999


Q ss_pred             cceeecCCCCHHHH-HHHHHHH--HhcCCcceEEEecccccCCchhhcccchhhhHH--HHHHHHHHHHHHHHHHHHhcC
Q 013567          196 ENLIVCQPDNGEMA-LEIADRM--CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG--LQARLMSQALRKMSGNASKAG  270 (440)
Q Consensus       196 ~~l~i~~~~~~ee~-l~~i~~l--~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~--~~ar~l~~~l~~L~~lak~~~  270 (440)
                      +++++.++.+.+++ ++.++.+  +++..+++|||||+++++++.++++++|+.+.+  .|+|.++++|++|..+++++|
T Consensus        83 d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~  162 (333)
T 3io5_A           83 ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKN  162 (333)
T ss_dssp             GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999 8888777  677889999999999999878899988877766  789999999999999999999


Q ss_pred             CEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEe
Q 013567          271 CTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIF  350 (440)
Q Consensus       271 ~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~  350 (440)
                      ++||+|||+++ ++.||++|++ +||+++ |++++|++++|.+.+|  ++++++|++++++++|+|+.+|....+|+|+|
T Consensus       163 i~vi~tNQV~k-~G~~fg~p~~-~GG~~l-~~ss~Rl~lrk~~~ik--~~~~~~G~~~~v~~~k~kv~k~k~~~~~~i~~  237 (333)
T 3io5_A          163 IPCIAINHTYE-TQEMFSKTVM-GGGTGP-MYSADTVFIIGKRQIK--DGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKF  237 (333)
T ss_dssp             CEEEEEEEC-----------------CCG-GGGSSEEEEEEEC------------CEEEEEEEECSSBCTTCEEEEEBCT
T ss_pred             CEEEEECCeee-cCcccCCCCC-CCccee-eeeeEEEEEEeccccc--cCCccEEeEEEEeEEEEEEccCCcCCcEEEEe
Confidence            99999999998 9999999875 999999 9999999999999999  68899999999999999999999999999999


Q ss_pred             CCCcccchhhhhHHHHccceec-cCceEEeC--ceeccccHH-------------HHHHHHHhCcHHHHHHHHHH
Q 013567          351 GEGVSKLGCMLDCAEMMDIVVR-KGAWYSYG--DQRLGQGRD-------------KALQYLRDNPLLQEEIEKVV  409 (440)
Q Consensus       351 ~~Gi~~~~~i~~~~~~~~ii~k-~G~~~~~~--~~~~gq~~~-------------~~~~~L~e~~~~~~ei~~~~  409 (440)
                      ++||+++++|+|+|+++|+|.| +|+||+|+  ++++||+++             .++.-|-+|+++++.|+.+.
T Consensus       238 ~~Gi~~~~~lld~a~~~gii~k~~g~wy~~~~~~~~~G~~~~~ek~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  312 (333)
T 3io5_A          238 DGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETGEMIREEKSWRAKDTNCTTFWGPLFKHQPFRDAIKRAY  312 (333)
T ss_dssp             TSCBCTTTTHHHHHHHHTSEECSSTTEEEEEEEETTTTEEEECSCCEEGGGGSSHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHhCCeEEcCCCceEEeccCCccccccHHHHHHHHhhcCchHHHHHHHhcCchHHHHHHHhh
Confidence            9999999999999999999998 99999997  778886553             34444667777777666543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=100.00  E-value=6.4e-49  Score=455.63  Aligned_cols=328  Identities=54%  Similarity=0.916  Sum_probs=306.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++.++|+.++.+|+++|++++++++++.......++|||++.||.+|+ |||++|++++|+||||+||||||++++.++
T Consensus       328 ~~~~~~l~~a~~~i~~~fg~~~~~~l~~~~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~  407 (1706)
T 3cmw_A          328 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA  407 (1706)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCCcceeccccccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999999999988766778999999999999999 999999999999999999999999999999


Q ss_pred             hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567          168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ  247 (440)
Q Consensus       168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q  247 (440)
                      ++.+.+|+||++|++.++.+++.+|++.+++.+.++.+.+++++.++.++++.++++|||||++.+.+..++++.+|+.+
T Consensus       408 ~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~  487 (1706)
T 3cmw_A          408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH  487 (1706)
T ss_dssp             HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCC
T ss_pred             HHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccc
Confidence            99999999999999999999999999999999999999999999999888888999999999999997677776667666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      .+.++|.++++++.|+.+++++|++||++||+++.++.+|++++.+.||.+|+|+++++++++|.+.++  ++++..+++
T Consensus       488 ~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~--~g~~~~~~~  565 (1706)
T 3cmw_A          488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE  565 (1706)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccc--cCccccCcE
Confidence            667888999999999999999999999999999999998999999999999999999999999987766  455566788


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK  407 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~  407 (440)
                      ++++|+|||..||+..+.|+|+|++||+++++++|+|++.+++.++|+||+|+++++|||++.++.||++||++.+||++
T Consensus       566 ~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~~~~~d~a~~~~~i~k~g~w~~y~~~~i~~g~~~~~~~l~~~p~l~~~i~~  645 (1706)
T 3cmw_A          566 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK  645 (1706)
T ss_dssp             EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCeEEEEEecCCCccccccHHHhhhhcCceeccccEEeeCCceecccHHHHHHHHhhCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCC
Q 013567          408 VVRSMMSDGSV  418 (440)
Q Consensus       408 ~~~~~~~~~~~  418 (440)
                      ++|+++.....
T Consensus       646 ~~~~~~~~~p~  656 (1706)
T 3cmw_A          646 KVRELLLSNPN  656 (1706)
T ss_dssp             HHHHHHCSSCC
T ss_pred             HHHHHhccCCc
Confidence            99999876643

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=99.97  E-value=2.5e-31  Score=265.36  Aligned_cols=257  Identities=25%  Similarity=0.389  Sum_probs=165.0

Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHH
Q 013567           80 SSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTL  159 (440)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTL  159 (440)
                      +......+..+..++++.+...+++.|.++..+.  + ......++|||++.||.+|+||+++|++++|+||||+|||||
T Consensus        47 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~l  123 (324)
T 2z43_A           47 LSVAAGIPLSTAQKIIKEARDALDIRFKTALEVK--K-ERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQL  123 (324)
T ss_dssp             -------------------------CCCCHHHHH--H-HHCSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHhhcccCccchhhhh--h-hhccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHH
Confidence            3333344556677888888888888887776543  1 123467999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHH---HHHHHHHHHhc-CC
Q 013567          160 ALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEM---ALEIADRMCRS-GA  221 (440)
Q Consensus       160 aL~li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee---~l~~i~~l~~~-~~  221 (440)
                      |++++..++.+      +++++||++|+++++.    +++++|+++    +++++.++.+.++   ++..+..++++ .+
T Consensus       124 a~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~  203 (324)
T 2z43_A          124 CHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS  203 (324)
T ss_dssp             HHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccC
Confidence            99999998766      7899999999987664    567788877    4778888877765   45566666766 78


Q ss_pred             cceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          222 IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       222 ~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      +++|||||++.++ ..++++. +  ....+.+.+.++++.|+.++++++++||++||+++.++.+|+++..+.||.+|.+
T Consensus       204 ~~lvVIDsl~~l~-~~~~~~~-g--~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~  279 (324)
T 2z43_A          204 IKLIVVDSVTSHF-RAEYPGR-E--NLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYH  279 (324)
T ss_dssp             EEEEEETTTTHHH-HHHSCTT-T--SHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----------------------
T ss_pred             CCEEEEeCcHHHh-hhhhcCc-c--cHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHh
Confidence            9999999999987 3444321 1  1112234678999999999999999999999999888777777888999999999


Q ss_pred             eceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567          302 FASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK  356 (440)
Q Consensus       302 ~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~  356 (440)
                      ++++++.+++..           |..+.+++.|||..| ...+.|+|. +.||..
T Consensus       280 ~~d~~l~l~r~~-----------~~~r~~~v~k~~~~p-~~~~~f~I~-~~Gi~~  321 (324)
T 2z43_A          280 VPGIRIQLKKSR-----------GNRRIARVVDAPHLP-EGEVVFALT-EEGIRD  321 (324)
T ss_dssp             --CEEEEEEECS-----------TTEEEEEEEECSSSC-CEEEEEEEE-TTEEEC
T ss_pred             hCcEEEEEEEcC-----------CCeEEEEEEECCCCC-ceEEEEEEe-CCCccc
Confidence            999999999742           234689999999874 456899997 778853

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=99.97  E-value=2.9e-31  Score=267.10  Aligned_cols=251  Identities=23%  Similarity=0.361  Sum_probs=172.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567           86 SRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus        86 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+..+..++++.+...+++.|.++..+.-   ......++|||++.||.+|+|||++|++++|+||||+||||||++++.
T Consensus        68 is~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~  144 (343)
T 1v5w_A           68 LSEAKVDKIKEAANKLIEPGFLTAFEYSE---KRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV  144 (343)
T ss_dssp             ------------------CCSEEHHHHHH---HGGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcccCCCcHHHHHh---hhcccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34456777788887777776666554431   123467899999999999999999999999999999999999999999


Q ss_pred             HHhh------cCCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHH---HHHHHHHhc--CCcceEE
Q 013567          166 EVQK------LGGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMAL---EIADRMCRS--GAIDLIC  226 (440)
Q Consensus       166 ~~~~------~~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l---~~i~~l~~~--~~~~lvV  226 (440)
                      .++.      .+++++||++|+++++.    +++++|+++    +++++.++.+.+++.   ..+..++++  .++++||
T Consensus       145 ~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvV  224 (343)
T 1v5w_A          145 TAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLI  224 (343)
T ss_dssp             HTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEE
T ss_pred             HHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEE
Confidence            8765      47899999999987764    567788887    578887777666544   445666666  7899999


Q ss_pred             EecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc--cc-CCceeecccceeeeec
Q 013567          227 VDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFFA  303 (440)
Q Consensus       227 IDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~a  303 (440)
                      |||++.++ ..++++. |+  +..+.+.+.++++.|+.+++++|++||++||+++.++.  +| +++..+.||++|.|++
T Consensus       225 IDsl~~l~-~~~~~~~-g~--~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~a  300 (343)
T 1v5w_A          225 IDSIMALF-RVDFSGR-GE--LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHAS  300 (343)
T ss_dssp             EETSGGGH-HHHCCGG-GC--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSS
T ss_pred             EechHHHH-HHHhccc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhC
Confidence            99999998 3444421 11  11223457899999999999999999999999988765  56 6777889999999999


Q ss_pred             eEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567          304 SVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK  356 (440)
Q Consensus       304 ~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~  356 (440)
                      ++|+.+++.+           |..+.++|.|||.. |...+.|+|. +.||..
T Consensus       301 d~~l~l~r~~-----------~~~r~~~v~K~r~~-p~~~~~f~I~-~~Gi~~  340 (343)
T 1v5w_A          301 TTRISLRKGR-----------GELRIAKIYDSPEM-PENEATFAIT-AGGIGD  340 (343)
T ss_dssp             SEEEEEEESS-----------TTEEEEEEEECTTC-CSSCEEEEEE-TTEEEE
T ss_pred             CEEEEEEEcC-----------CCEEEEEEEECCCC-CCeeEEEEEe-CCCccC
Confidence            9999999742           23468999999988 4567899998 788853

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=99.97  E-value=7.7e-31  Score=261.11  Aligned_cols=258  Identities=23%  Similarity=0.342  Sum_probs=198.5

Q ss_pred             ccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHH
Q 013567           78 GFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKT  157 (440)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKT  157 (440)
                      ..+.+....+.++..++++.+...+++.|.++..+.  + ......++|||++.||.+|+||+++|++++|+|+||+|||
T Consensus        36 ~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~--~-~~~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT  112 (322)
T 2i1q_A           36 GELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLL--K-QRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKT  112 (322)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHH--H-HHTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHH
T ss_pred             HHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHH--H-HhccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHH
Confidence            334445566778888999999988888888776552  1 1234679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh------------cC----CcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHH---HH
Q 013567          158 TLALHAIAEVQK------------LG----GNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEM---AL  210 (440)
Q Consensus       158 TLaL~li~~~~~------------~~----~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee---~l  210 (440)
                      |||++++.+++.            .+    ++|+||++|+++++.    +++++|+++    +++++.++.+.++   ++
T Consensus       113 ~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l  192 (322)
T 2i1q_A          113 QIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFA  192 (322)
T ss_dssp             HHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHH
Confidence            999999988642            23    689999999987664    567788887    5788888888775   44


Q ss_pred             HHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567          211 EIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN  289 (440)
Q Consensus       211 ~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~  289 (440)
                      +.+..++++ .++++|||||++.++ ..++++. +  ....+.+.+.++++.|+.++++++++||++||+++.++.+|++
T Consensus       193 ~~l~~~~~~~~~~~lvVIDsl~~l~-~~~~~~~-~--~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~  268 (322)
T 2i1q_A          193 EKIEDLIQEGNNIKLVVIDSLTSTF-RNEYTGR-G--KLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGM  268 (322)
T ss_dssp             HTHHHHHHTTCEEEEEEEECSSHHH-HHHCCCT-T--SHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------
T ss_pred             HHHHHHHhhccCccEEEEECcHHHH-HHHhcCC-c--cHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCC
Confidence            556666766 789999999999987 3444321 1  1112334678999999999999999999999999888777788


Q ss_pred             ceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          290 PEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       290 ~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      +..+.||.+|.+++++++.+++..      +     ..+.+++.|||..|. ..+.|+|. +.||.
T Consensus       269 ~~~~~g~~~~~~~~d~~i~l~~~~------~-----~~r~~~v~k~~~~p~-~~~~f~I~-~~Gi~  321 (322)
T 2i1q_A          269 AEQAIGGHIVGHAATFRFFVRKGK------G-----DKRVAKLYDSPHLPD-AEAIFRIT-EKGIQ  321 (322)
T ss_dssp             CCEESSHHHHHHHCSEEEEEEECS------T-----TEEEEEEEECSSSCC-EEEEEEEE-TTEEE
T ss_pred             CcCCCCcHHHHhcCcEEEEEEecC------C-----CeEEEEEEECCCCCC-eEEEEEEe-CCCcC
Confidence            889999999999999999999742      1     235799999998754 56789997 77873

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=99.95  E-value=4e-27  Score=244.68  Aligned_cols=298  Identities=13%  Similarity=0.069  Sum_probs=208.0

Q ss_pred             ccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeec-----------c
Q 013567           49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRL-----------G  115 (440)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~-----------~  115 (440)
                      ..+.++|...||.+|++++.+|+++..+.++...  +.+.+.++..+.++..+.+|...........+           .
T Consensus        92 ~~~s~~n~~~ya~iv~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (444)
T 2q6t_A           92 ATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEEAGSLDEILDTAGKKILEVALTKTDTEARPMRELVHETFEHIE  171 (444)
T ss_dssp             TCSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHCSCCCSSEEHHHHHHHHHHHTT
T ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHH
Confidence            4456789999999999999999999888776553  23345666666677777777664433322221           1


Q ss_pred             CC--CCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhh----h
Q 013567          116 SA--GGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSY----S  188 (440)
Q Consensus       116 ~~--~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~----a  188 (440)
                      ..  ......++|||++.||.++ |||++|++++|+|+||+||||||++++.+++. .+.+|+||+.|++..+..    +
T Consensus       172 ~~~~~~~~~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~  250 (444)
T 2q6t_A          172 ALFQNKGEVAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMC  250 (444)
T ss_dssp             C----------CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHH
T ss_pred             HHHhCCCCCCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH
Confidence            11  1234678999999999999 99999999999999999999999999999986 477999999999876542    2


Q ss_pred             hhhccccc-------------------------ceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcc
Q 013567          189 KALGVDVE-------------------------NLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEG  241 (440)
Q Consensus       189 ~~lGv~~~-------------------------~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~  241 (440)
                      ...+++.+                         ++++.+.  .+..++...++++.++.++++||||+++.+....  .+
T Consensus       251 ~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~--~~  328 (444)
T 2q6t_A          251 SEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPG--SG  328 (444)
T ss_dssp             HHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-----
T ss_pred             HHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCc--CC
Confidence            23344432                         2444433  3688888888888888889999999999987420  00


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeeccccccc
Q 013567          242 EIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKSV  318 (440)
Q Consensus       242 ~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~  318 (440)
                         . ....+.+.+..+++.|+.++++++++||+++|+++......+ .|  ....++..+.+.++.++++.+.+.... 
T Consensus       329 ---~-~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~-  403 (444)
T 2q6t_A          329 ---K-SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNP-  403 (444)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCS-
T ss_pred             ---C-CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCC-
Confidence               0 001234567889999999999999999999999875543211 11  123356678999999999998654321 


Q ss_pred             CCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567          319 KGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC  359 (440)
Q Consensus       319 ~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~  359 (440)
                        +......+.+.|.|+|..|..   .+.+.|.....++.+
T Consensus       404 --~~~~~~~~~l~i~K~R~g~~g---~~~l~f~~~~~~f~~  439 (444)
T 2q6t_A          404 --HSEKAGIAEIIVGKQRNGPTG---TVELQFHASHVRFND  439 (444)
T ss_dssp             --SSSCCSEEEEEEEECSSSCCE---EEEEEEETTTTEEEC
T ss_pred             --cCCCCCeEEEEEEecCCCCce---EEEEEEECCccEEec
Confidence              111113568999999987653   567777776655443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.95  E-value=1.2e-27  Score=245.13  Aligned_cols=254  Identities=23%  Similarity=0.368  Sum_probs=173.4

Q ss_pred             CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHH
Q 013567           83 SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALH  162 (440)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~  162 (440)
                      .-.....+..++++.+.+.....|..+..+.  + ......+++||++.||++|+|||++|++++|+||||+|||||+++
T Consensus       121 ~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~--~-~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~  197 (400)
T 3lda_A          121 IKGISEAKADKLLNEAARLVPMGFVTAADFH--M-RRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHT  197 (400)
T ss_dssp             STTCCHHHHHHHHHHHHHHSCCSCCCHHHHH--H-HHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhccccCCCHHHHH--h-hhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHH
Confidence            3444555666666665543322222111110  0 122467899999999999999999999999999999999999998


Q ss_pred             HHHHHhhc------CCcEEEEcCCCCCChh----hhhhhccccc----ceeecCCCCHHHHH---HHHHHHHhcCCcceE
Q 013567          163 AIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDVE----NLIVCQPDNGEMAL---EIADRMCRSGAIDLI  225 (440)
Q Consensus       163 li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~~----~l~i~~~~~~ee~l---~~i~~l~~~~~~~lv  225 (440)
                      ++...+.+      +++++||++|+.+.+.    +++++|++++    ++.+..+.+.++..   ..+..++....++++
T Consensus       198 la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~ll  277 (400)
T 3lda_A          198 LAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI  277 (400)
T ss_dssp             HHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred             HHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceE
Confidence            88777652      5779999999987764    4677888875    77777777665443   344455556789999


Q ss_pred             EEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc--cc-CCceeecccceeeee
Q 013567          226 CVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFF  302 (440)
Q Consensus       226 VIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~  302 (440)
                      +||+++.+++ .++++. |  ....+.+.+.++++.|+.+++++|+|||++||++...+.  +| +++..+.||..|.|.
T Consensus       278 VIDs~t~~~~-~~~sg~-g--~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~  353 (400)
T 3lda_A          278 VVDSVMALYR-TDFSGR-G--ELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYS  353 (400)
T ss_dssp             EEETGGGGCC--------C--CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHH
T ss_pred             EecchhhhCc-hhhcCc-c--chHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHh
Confidence            9999999985 555431 1  112334556888999999999999999999999765543  33 566778899999999


Q ss_pred             ceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567          303 ASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK  356 (440)
Q Consensus       303 a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~  356 (440)
                      ++.++++++..      +     ..+.+++.|+|..|+.. +.|.|. +.||..
T Consensus       354 ad~vl~L~~~~------g-----~~R~l~v~K~R~~p~~e-~~F~It-~~Gi~~  394 (400)
T 3lda_A          354 STTRLGFKKGK------G-----CQRLCKVVDSPCLPEAE-CVFAIY-EDGVGD  394 (400)
T ss_dssp             CSEEEEEEECS------T-----TEEEEEEEECSSSCSCE-EEEEEE-TTEEEC
T ss_pred             cceEEEEEecC------C-----CcEEEEEEcCCCCCCCc-eEEEEe-CCcccc
Confidence            99999999742      2     23689999999888765 899998 888864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.95  E-value=1.3e-27  Score=241.13  Aligned_cols=250  Identities=24%  Similarity=0.347  Sum_probs=173.0

Q ss_pred             ccHHHHHHHHHHHHHHHHh-hcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567           86 SRFLDRQRALDAAMNDINS-SFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus        86 ~~~~~~~~~l~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      ....++.++++.+...+.. .|.++..+.-   ......+||||++.||.+|+||+++|++++|+||||+|||||+++++
T Consensus        76 ~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~  152 (349)
T 1pzn_A           76 ISEGTALKIIQAARKAANLGTFMRADEYLK---KRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA  152 (349)
T ss_dssp             CCHHHHHHHHHHHHHHCSTTSCEEHHHHHH---HHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhhccccCCccHHHHHh---hhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456677788877777655 4444332211   12346789999999999999999999999999999999999988888


Q ss_pred             HHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCC---HHHHHHHHHHHHhc-----CCc
Q 013567          165 AEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDN---GEMALEIADRMCRS-----GAI  222 (440)
Q Consensus       165 ~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~---~ee~l~~i~~l~~~-----~~~  222 (440)
                      ...+.+      ++.|+||++++.+.+.    +++..+++.    +++.+....+   ..+.++.+..++.+     .++
T Consensus       153 ~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~  232 (349)
T 1pzn_A          153 VMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPV  232 (349)
T ss_dssp             HHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCE
T ss_pred             HHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCC
Confidence            776532      3567999999886443    445556554    5666655443   23456667777766     689


Q ss_pred             ceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       223 ~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      +++|||++++++. .+.++. +  ....+.+.+.++++.|..+++++++|||++||++..++.+++++..+.+|.+|.|+
T Consensus       233 ~llIlDs~ta~ld-~~~~~~-~--~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~  308 (349)
T 1pzn_A          233 KLLIVDSLTSHFR-SEYIGR-G--ALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS  308 (349)
T ss_dssp             EEEEEETSSTTHH-HHCCST-T--THHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTT
T ss_pred             CEEEEeCchHhhh-hhhccc-c--cHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeec
Confidence            9999999999873 333321 1  11122345678888999999999999999999998887777888889999999999


Q ss_pred             ceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          303 ASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       303 a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      ++.|+.+++..           |..+.+++.|++..|.. .+.|.|. +.||.
T Consensus       309 ~~~rL~l~~~~-----------~~~Ri~k~~ks~~~~~~-~~~f~It-~~Gi~  348 (349)
T 1pzn_A          309 ATLRVYLRKGK-----------GGKRIARLIDAPHLPEG-EAVFSIT-EKGIE  348 (349)
T ss_dssp             CSEEEEEEECT-----------TSEEEEEESCSSSSCCS-EEEEEEE-TTEEE
T ss_pred             CcEEEEEEEcC-----------CCeEEEEEEeCCCCCCe-EEEEEEc-CCCCC
Confidence            99999998742           12457899999887654 4899997 77873

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=99.95  E-value=4.7e-27  Score=244.09  Aligned_cols=295  Identities=15%  Similarity=0.088  Sum_probs=204.9

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccCCCCccHHHH--HHHHHHHHHHHHhhcCCCCeeeccCC--------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDR--QRALDAAMNDINSSFGKGSVTRLGSA--------  117 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~i~~~~~~~~~~~~~~~--------  117 (440)
                      ...+.++|...||.+|++++.+|+++..+.++.....+.+..+.  .+.++..+.+|...........+.+.        
T Consensus        91 ~~~~~~~n~~~ya~~v~e~~~~R~li~~~~~i~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i  170 (444)
T 3bgw_A           91 ASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVNESDDGPVKPIQEAVSELMEIEASGTDDDDGSIDEALVTVYEEI  170 (444)
T ss_dssp             HHCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCTHHHHHHHHHHHHSCCCSSCCCCCHHHHHHHHHHH
T ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH
Confidence            34567789999999999999999999887776654211133333  44444444445443222111111110        


Q ss_pred             CC--CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhh----hh
Q 013567          118 GG--ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSK----AL  191 (440)
Q Consensus       118 ~~--~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~----~l  191 (440)
                      ..  ....++|||++.||.++ |||++|+++.|+|+||+||||||++++.+++..+.+|+||+.|++..+...+    ..
T Consensus       171 ~~~~~~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~  249 (444)
T 3bgw_A          171 ESADGNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAG  249 (444)
T ss_dssp             HTCCSSCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHS
T ss_pred             HHhhcCCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHc
Confidence            00  34678999999999999 7999999999999999999999999999999888899999999998875322    22


Q ss_pred             cccc---------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcc--eEEEecccccCCchhhc
Q 013567          192 GVDV---------------------------ENLIVCQP--DNGEMALEIADRMCRSGAID--LICVDSVSALTPRAEIE  240 (440)
Q Consensus       192 Gv~~---------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~--lvVIDsl~~l~~~~el~  240 (440)
                      |++.                           .++++.+.  .+.+++...++++.++.+++  +|||||++.+.....  
T Consensus       250 ~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~--  327 (444)
T 3bgw_A          250 SINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA--  327 (444)
T ss_dssp             CCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCS--
T ss_pred             CCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCC--
Confidence            3331                           23444443  47888999999888888999  999999999864210  


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeecccccc
Q 013567          241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKS  317 (440)
Q Consensus       241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~  317 (440)
                      .       ..+.+.++.+++.|+.+|+++|++||+++|+++......+ .|  ....++..+.+.++..+++.+.+....
T Consensus       328 ~-------~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~  400 (444)
T 3bgw_A          328 N-------DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDK  400 (444)
T ss_dssp             S-------SCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCT
T ss_pred             C-------CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccc
Confidence            0       1234457889999999999999999999999875542111 12  223466678999999999998654321


Q ss_pred             cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567          318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG  358 (440)
Q Consensus       318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~  358 (440)
                       ++ +. ...+.+.|.|||..|..   .+.+.|.....++.
T Consensus       401 -~~-~~-~~~~~l~i~K~R~G~~g---~v~l~f~~~~~rf~  435 (444)
T 3bgw_A          401 -ES-ES-KNIVEVIIAKHRDGPVG---TVSLAFIKEYGNFV  435 (444)
T ss_dssp             -TC-SS-TTEEEEEEEEESSSCCE---EEEEEEETTTTEEE
T ss_pred             -cc-cC-CCeEEEEEEcccCCCCe---EEEEEEEcCccEEe
Confidence             11 11 13468999999976643   56777776654443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.94  E-value=1.6e-26  Score=240.72  Aligned_cols=298  Identities=12%  Similarity=0.131  Sum_probs=208.7

Q ss_pred             cccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC---------
Q 013567           48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS---------  116 (440)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~---------  116 (440)
                      ...+.++|...||.+|++++..|+++..+.++...  +...+..+..+.++..+..+...........+.+         
T Consensus        94 ~~~~s~ani~~ya~iv~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (454)
T 2r6a_A           94 DAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEVSQRKHSGAFKNIKDILVQTYDNI  173 (454)
T ss_dssp             TSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCSHHHHHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHHHH
T ss_pred             HcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHhccccccCccHHHHHHHHHHHH
Confidence            34566889999999999999999998888776543  2333455555555666666655433222111110         


Q ss_pred             ----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhh----
Q 013567          117 ----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSY----  187 (440)
Q Consensus       117 ----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~----  187 (440)
                          .....+.++|||++.||.++ |||++|++++|+|+||+|||||+++++..++. .+.+|+||+.|++..+..    
T Consensus       174 ~~~~~~~~~~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~  252 (454)
T 2r6a_A          174 EMLHNRDGEITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRML  252 (454)
T ss_dssp             HHHHSCCCCCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHH
T ss_pred             HHHHhCCCCCCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH
Confidence                01234679999999999999 99999999999999999999999999999886 466999999999876542    


Q ss_pred             hhhhccccc-------------------------ceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhc
Q 013567          188 SKALGVDVE-------------------------NLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE  240 (440)
Q Consensus       188 a~~lGv~~~-------------------------~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~  240 (440)
                      +...|++.+                         ++++.++  .+..++...++.+++..++++||||+++.+.... ..
T Consensus       253 ~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~-~~  331 (454)
T 2r6a_A          253 CAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSG-RS  331 (454)
T ss_dssp             HHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSC-C-
T ss_pred             HHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCC-CC
Confidence            223444432                         2344433  3788888888888877889999999999987421 10


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeecccccc
Q 013567          241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKS  317 (440)
Q Consensus       241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~  317 (440)
                      .       ..+.+.+..+++.|+.+++++|++||+++|+++......+ .|  ....++..+.+.++..+++.+.+....
T Consensus       332 ~-------~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~~  404 (454)
T 2r6a_A          332 K-------ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNK  404 (454)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC---
T ss_pred             C-------CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccccCc
Confidence            0       1223457888999999999999999999999876543211 01  123456688999999999998654321


Q ss_pred             cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchhh
Q 013567          318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCM  360 (440)
Q Consensus       318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i  360 (440)
                         +......+.+.|.|||..|+   ..+.+.|.....++.++
T Consensus       405 ---~~~~~~~~~l~i~K~R~G~~---g~v~l~f~~~~~~f~~~  441 (454)
T 2r6a_A          405 ---DSENKNIIEIIIAKQRNGPV---GTVQLAFIKEYNKFVNL  441 (454)
T ss_dssp             -------CCEEEEEEEEESSSCC---EEEEEEEETTTTEEECC
T ss_pred             ---ccCCCCeEEEEEecccCCCC---eEEEEEEEcCccEEeCC
Confidence               11112356899999997765   35778888777655543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.94  E-value=3.5e-26  Score=216.28  Aligned_cols=218  Identities=25%  Similarity=0.382  Sum_probs=150.5

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChh----hhhhh
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPS----YSKAL  191 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~----~a~~l  191 (440)
                      +.+++||++.||.+|+||+++|++++|+||||+|||||+++++..++.      .+.+++|+++++.+...    +++.+
T Consensus         3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~   82 (243)
T 1n0w_A            3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY   82 (243)
T ss_dssp             CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred             ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHc
Confidence            568999999999999999999999999999999999998888876543      26899999999975543    45678


Q ss_pred             cccc----cceeecCCCCHHHHHH---HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567          192 GVDV----ENLIVCQPDNGEMALE---IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG  264 (440)
Q Consensus       192 Gv~~----~~l~i~~~~~~ee~l~---~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~  264 (440)
                      |+++    +++.+..+.+.++...   .+..++...++++++||+++.+.. ..+++. +  ....+.+.+.++++.|+.
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~-~--~~~~r~~~~~~~~~~l~~  158 (243)
T 1n0w_A           83 GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGR-G--ELSARQMHLARFLRMLLR  158 (243)
T ss_dssp             TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCC-c--cHHHHHHHHHHHHHHHHH
Confidence            8887    6777777777665443   355556667899999999998874 333321 0  011223346788888999


Q ss_pred             HHHhcCCEEEEEecccccccc--cc-CCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567          265 NASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY  341 (440)
Q Consensus       265 lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~  341 (440)
                      ++++.++|||+++|..+....  ++ +++..+.||..|.+.++.++.+++..           |..+.++|.|+|..|..
T Consensus       159 ~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~-----------~~~r~l~v~K~r~~~~~  227 (243)
T 1n0w_A          159 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR-----------GETRICKIYDSPCLPEA  227 (243)
T ss_dssp             HHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS-----------TTEEEEEECCBTTBSCE
T ss_pred             HHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC-----------CCeEEEEEEECCCCCCC
Confidence            999999999999999876653  23 34556789999999999999998742           12458999999987653


Q ss_pred             ceEEEEEEeCCCccc
Q 013567          342 KQAEFEIIFGEGVSK  356 (440)
Q Consensus       342 ~~~~~~i~~~~Gi~~  356 (440)
                       ...|+|. +.||..
T Consensus       228 -~~~f~I~-~~Gi~~  240 (243)
T 1n0w_A          228 -EAMFAIN-ADGVGD  240 (243)
T ss_dssp             -EEEEEEE-TTEEEC
T ss_pred             -eEEEEEe-CCcccc
Confidence             4889987 888853

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=99.93  E-value=5.3e-25  Score=208.65  Aligned_cols=209  Identities=22%  Similarity=0.240  Sum_probs=151.6

Q ss_pred             CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChh--hhhhhccccc
Q 013567          120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPS--YSKALGVDVE  196 (440)
Q Consensus       120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~--~a~~lGv~~~  196 (440)
                      .++++||||++.||++|+|||++|++++|+|+||+|||+||++++.+.+ ..+.+++|++.|++..+.  ++..++.+.+
T Consensus         7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~   86 (251)
T 2zts_A            7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE   86 (251)
T ss_dssp             -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH
T ss_pred             CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChH
Confidence            4688999999999999999999999999999999999999999998764 557889999999987664  3334444331


Q ss_pred             ------ceee------------------cCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHH
Q 013567          197 ------NLIV------------------CQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQA  252 (440)
Q Consensus       197 ------~l~i------------------~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~a  252 (440)
                            ++.+                  ......+++++.+...+...++++++||+++.+..  ...    +.      
T Consensus        87 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~--~~~----~~------  154 (251)
T 2zts_A           87 KYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL--RLE----EE------  154 (251)
T ss_dssp             HHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH--HSS----SG------
T ss_pred             HHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhh--hcc----Ch------
Confidence                  1111                  12234566777777788888999999999988752  111    11      


Q ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEE
Q 013567          253 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRV  332 (440)
Q Consensus       253 r~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v  332 (440)
                      +.+.++++.|+.+++++|++|++++|..+....      ...+...+.+.++..+.+++.+     .++   ...+.+.|
T Consensus       155 ~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~------~~~~~~~~~~~aD~vi~l~~~~-----~~~---~~~R~l~I  220 (251)
T 2zts_A          155 RKIREVLLKLNTILLEMGVTTILTTEAPDPQHG------KLSRYGIEEFIARGVIVLDLQE-----KNI---ELKRYVLI  220 (251)
T ss_dssp             GGHHHHHHHHHHHHHHHCCEEEEEECCC----C------CSSSSSCGGGGCSEEEEEEEEE-----CSS---SEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEEEeccccc------ccccCCceeEEeeEEEEEEEEe-----cCC---eEEEEEEE
Confidence            124567888999999999999999998653321      1234456678889888887643     112   23467999


Q ss_pred             eeccCCC-CCceEEEEEEeCCCcc
Q 013567          333 QKSKVSR-PYKQAEFEIIFGEGVS  355 (440)
Q Consensus       333 ~Knr~~~-p~~~~~~~i~~~~Gi~  355 (440)
                      .|+|..| +.....|+|. ++||.
T Consensus       221 ~K~R~~~~~~~~~~f~It-~~Gi~  243 (251)
T 2zts_A          221 RKMRETRHSMKKYPFEIG-PNGIV  243 (251)
T ss_dssp             EEETTCCCCCBEEEEEEE-TTEEE
T ss_pred             EEcCCCCCCCEEEEEEEe-CCcEE
Confidence            9999776 3456789997 77885

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=99.92  E-value=5.7e-24  Score=211.44  Aligned_cols=237  Identities=17%  Similarity=0.158  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567           90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus        90 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      ...+++.++++.|++.  .           ....++|||++.||.++ |||++|++++|+|+||+||||||++++.+++.
T Consensus        29 ~~~~~~~~~~~~~~~~--~-----------~~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~   94 (315)
T 3bh0_A           29 SIDEALVTVYEEIESA--D-----------GNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD   94 (315)
T ss_dssp             CCHHHHHHHHHHHHTC--S-----------SSCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhc--c-----------CCCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4667788888888764  1           12458999999999999 99999999999999999999999999999988


Q ss_pred             cCCcEEEEcCCCCCChhhhh----hhcccc---------------------------cceeecCC--CCHHHHHHHHHHH
Q 013567          170 LGGNAMLVDAEHAFDPSYSK----ALGVDV---------------------------ENLIVCQP--DNGEMALEIADRM  216 (440)
Q Consensus       170 ~~~~vv~id~E~~~~~~~a~----~lGv~~---------------------------~~l~i~~~--~~~ee~l~~i~~l  216 (440)
                      .+.+++||+.|++..+...+    ..|++.                           .++++.+.  .+.+++...++.+
T Consensus        95 ~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l  174 (315)
T 3bh0_A           95 NDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQT  174 (315)
T ss_dssp             TTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHH
Confidence            88899999999887664222    123321                           14445443  4688888889988


Q ss_pred             HhcCCcc--eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--e
Q 013567          217 CRSGAID--LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--E  291 (440)
Q Consensus       217 ~~~~~~~--lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~  291 (440)
                      .+..+++  +|||||++.+.....     .    ..+.+.+..+++.|+.+|+++|++||+++|+.+......+ .|  .
T Consensus       175 ~~~~~~~~~lVVID~l~~l~~~~~-----~----~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~  245 (315)
T 3bh0_A          175 KRKNPGKRVIVMIDYLQLLEPAKA-----N----DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLS  245 (315)
T ss_dssp             HHTSSSCCEEEEEECGGGSBCSCT-----T----SCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGG
T ss_pred             HHhcCCCCeEEEEeCchhcCCCCC-----C----CCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHH
Confidence            8888899  999999999874110     0    1223457889999999999999999999999865532111 11  2


Q ss_pred             eecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          292 VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       292 ~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      ...+...+.+.++..+.+.+.+.... ++ + ....+.+.|.|||..+..   .+.+.|.....
T Consensus       246 dlr~sg~ie~~aD~vi~L~r~~~~~~-~~-~-~~~~~~l~v~K~R~G~~g---~~~l~f~~~~~  303 (315)
T 3bh0_A          246 DLRESGQLEQDADIIEFLYRDDYYDK-ES-E-SKNIVEVIIAKHRDGPVG---TVSLAFIKEYG  303 (315)
T ss_dssp             GGTTTSHHHHHCSEEEEEEEHHHHCT-TC-T-TTTEEEEEEEEETTSCCE---EEEEEEEGGGT
T ss_pred             HhhhhhhhHhhCCEEEEEecccccCc-cc-c-CCCcEEEEEECCcCCCCc---eEEEEEECCCC
Confidence            24466788999999999998643321 11 1 113468999999976643   56666665543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.92  E-value=7.3e-24  Score=197.34  Aligned_cols=206  Identities=23%  Similarity=0.317  Sum_probs=156.0

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccc----
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDV----  195 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~----  195 (440)
                      +++||++.||.+++||+++|++++|+||||+|||||+.+++.   ..+.+++|++.++.....    +.+.++++.    
T Consensus         1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (220)
T 2cvh_A            1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEAL   77 (220)
T ss_dssp             CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHH
T ss_pred             CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHh
Confidence            489999999999989999999999999999999999888877   568899999999855543    233455543    


Q ss_pred             cceeecCCCCHHH---HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCE
Q 013567          196 ENLIVCQPDNGEM---ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCT  272 (440)
Q Consensus       196 ~~l~i~~~~~~ee---~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~t  272 (440)
                      +++.+.++...++   .+..++.++.. ++++++||+++.+..... ..  .     ...+.+.++++.|+.++++.++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~-~~--~-----~~~~~~~~~~~~L~~l~~~~~~~  148 (220)
T 2cvh_A           78 SRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEE-NR--S-----GLIAELSRQLQVLLWIARKHNIP  148 (220)
T ss_dssp             HHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGG-GS--S-----TTHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcC-ch--H-----HHHHHHHHHHHHHHHHHHHcCCE
Confidence            3455655555433   45556666544 699999999998864211 10  0     12345677888899999999999


Q ss_pred             EEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCC
Q 013567          273 LIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGE  352 (440)
Q Consensus       273 VI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~  352 (440)
                      ||+++|..+....   ....+.++..|.+.++.++.+++..       .   +..+.+.|.|+|..++.....|+|. ++
T Consensus       149 vi~~~h~~~~~~~---~~~~p~~~~~~~~~~d~vi~l~~~~-------~---~~~r~l~v~K~r~~~~~~~~~f~I~-~~  214 (220)
T 2cvh_A          149 VIVINQVHFDSRT---EMTKPVAEQTLGYRCKDILRLDKLP-------K---PGLRVAVLERHRFRPEGLMAYFRIT-ER  214 (220)
T ss_dssp             EEEEECSSSSCTT---SSCCSCCCHHHHHTSSEEEEEEECS-------S---TTEEEEEEEECSSSCTTCEEEEEEE-TT
T ss_pred             EEEEeeEEEcCCC---CccccCCCcceeecCcEEEEEEEec-------C---CCEEEEEEEeCCCCCCCceEEEEEe-CC
Confidence            9999999765432   2345678889999999999998753       1   1346889999999888777899997 88


Q ss_pred             Ccc
Q 013567          353 GVS  355 (440)
Q Consensus       353 Gi~  355 (440)
                      ||.
T Consensus       215 Gi~  217 (220)
T 2cvh_A          215 GIE  217 (220)
T ss_dssp             EEE
T ss_pred             cee
Confidence            884

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=99.91  E-value=9e-24  Score=211.61  Aligned_cols=246  Identities=15%  Similarity=0.124  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHHHhhcC-CCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567           91 RQRALDAAMNDINSSFG-KGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus        91 ~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      ..+++..+++.|++.+. ...          .+.++|||++.||.++ |||++|+++.|+|+||+|||||+++++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~----------~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~   72 (338)
T 4a1f_A            4 IKEVLESAMDLITENQRKGSL----------EVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN   72 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT----------CCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCC----------CcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45678889999998654 221          3568999999999999 79999999999999999999999999999998


Q ss_pred             cCCcEEEEcCCCCCChhhhhh----hcccc-------------------------cceeecCC--CCHHHHHHHHHHHHh
Q 013567          170 LGGNAMLVDAEHAFDPSYSKA----LGVDV-------------------------ENLIVCQP--DNGEMALEIADRMCR  218 (440)
Q Consensus       170 ~~~~vv~id~E~~~~~~~a~~----lGv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~  218 (440)
                      .+.+|+||+.|++..+...+.    .+++.                         .++++.+.  .+.+++...++.+.+
T Consensus        73 ~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~  152 (338)
T 4a1f_A           73 DDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKS  152 (338)
T ss_dssp             TTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHH
Confidence            889999999999877653221    22222                         13555443  368899999998887


Q ss_pred             cC-CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeec
Q 013567          219 SG-AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTS  294 (440)
Q Consensus       219 ~~-~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~  294 (440)
                      .+ ++++|||||++.+......         ..+...++.+++.|+.+|++++|+||+++|+++.....-+ .|  ....
T Consensus       153 ~~gg~~lIVIDyLqlm~~~~~~---------~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLr  223 (338)
T 4a1f_A          153 QHKELGIAFIDYLQLMSGSKAT---------KERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIK  223 (338)
T ss_dssp             HCTTEEEEEEEEEECCCTHHHH---------HHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSE
T ss_pred             hcCCCCEEEEechHHhcCCCCC---------CChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcc
Confidence            77 8999999999998742110         1122347888999999999999999999999887643211 12  2345


Q ss_pred             ccceeeeeceEEEEEeeccccccc-----------CC-C---c----------------ccceEEEEEEeeccCCCCCce
Q 013567          295 GGIALKFFASVRLEIRSTGKIKSV-----------KG-D---E----------------DVGVRVRVRVQKSKVSRPYKQ  343 (440)
Q Consensus       295 gG~~l~~~a~~rl~l~r~~~ik~~-----------~g-~---~----------------~~G~~~~v~v~Knr~~~p~~~  343 (440)
                      ++.++.+.+++.+++.|.+.....           +. +   +                .......+.|.|||-.|..  
T Consensus       224 eSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g--  301 (338)
T 4a1f_A          224 DSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATG--  301 (338)
T ss_dssp             ETTEECCCCSEEEEEECHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCE--
T ss_pred             cchhhhhhCcEEEEEecchhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCc--
Confidence            788899999999999986543210           11 0   0                0123468899999976653  


Q ss_pred             EEEEEEeCCCcccchh
Q 013567          344 AEFEIIFGEGVSKLGC  359 (440)
Q Consensus       344 ~~~~i~~~~Gi~~~~~  359 (440)
                       .+.+.|.....++.+
T Consensus       302 -~v~l~f~~~~~~F~~  316 (338)
T 4a1f_A          302 -TVYTRFNAPFTRYED  316 (338)
T ss_dssp             -EEEEEEEGGGTEECC
T ss_pred             -eEEEEEccccceecc
Confidence             677777666655443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.4e-23  Score=198.62  Aligned_cols=204  Identities=19%  Similarity=0.241  Sum_probs=150.9

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc---
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE---  196 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~---  196 (440)
                      +++++||++.||.+|+||+++|++++|+||||+||||||++++.+.++.+.+++|+++|++....  +++.+|++++   
T Consensus         2 ~~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~   81 (247)
T 2dr3_A            2 TRRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE   81 (247)
T ss_dssp             -CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred             cccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence            35799999999999999999999999999999999999999999999889999999999875443  3445676653   


Q ss_pred             ---ceeecC-------------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHH
Q 013567          197 ---NLIVCQ-------------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARL  254 (440)
Q Consensus       197 ---~l~i~~-------------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~  254 (440)
                         ++.+.+                   +.+.+++...+.+++...++++++||+++.+.. .    +..         .
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~-~----~~~---------~  147 (247)
T 2dr3_A           82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI-N----KPA---------M  147 (247)
T ss_dssp             HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT-T----CGG---------G
T ss_pred             hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc-C----CHH---------H
Confidence               333222                   235566677777777667899999999998862 1    100         1


Q ss_pred             HHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEee
Q 013567          255 MSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQK  334 (440)
Q Consensus       255 l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~K  334 (440)
                      ..+.+..|..++++.|+|||+++|.......        ..+..|.++++.++.+++...     ++   ...+.+.|.|
T Consensus       148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~--------~~~~~~~~~~D~vi~L~~~~~-----~~---~~~r~l~v~K  211 (247)
T 2dr3_A          148 ARSIILQLKRVLAGTGCTSIFVSQVSVGERG--------FGGPGVEHGVDGIIRLDLDEI-----DG---ELKRSLIVWK  211 (247)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECC----C--------CC-CCHHHHSSEEEEEEEEEE-----TT---EEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEecCCCCccc--------ccccccceeEEEEEEEEEEcc-----CC---eeEEEEEEEE
Confidence            2345667788889999999999999764221        122357788899999987431     11   1357899999


Q ss_pred             ccCCCCC-ceEEEEEEeCCCccc
Q 013567          335 SKVSRPY-KQAEFEIIFGEGVSK  356 (440)
Q Consensus       335 nr~~~p~-~~~~~~i~~~~Gi~~  356 (440)
                      +|..+.. ....|+|. +.|+..
T Consensus       212 ~R~~~~~~~~~~f~i~-~~Gi~~  233 (247)
T 2dr3_A          212 MRGTSHSMRRHPFDIT-DKGIIV  233 (247)
T ss_dssp             ETTSCCCCBCEEEEEE-TTEEEE
T ss_pred             CCCCCCCCceEEEEEc-CCCEEE
Confidence            9987765 67889997 678853

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.91  E-value=6.2e-23  Score=192.21  Aligned_cols=205  Identities=25%  Similarity=0.415  Sum_probs=142.2

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCcEEEEcCCCCCChh----hhh
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGNAMLVDAEHAFDPS----YSK  189 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-------~~~vv~id~E~~~~~~----~a~  189 (440)
                      .+++++||++.||.+|+||+++|++++|+|||||||||| ++.+++...+       +++++|++++......    +.+
T Consensus         3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTl-l~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~   81 (231)
T 4a74_A            3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQL-AHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ   81 (231)
T ss_dssp             CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHH-HHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred             cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHH-HHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999999999999999999999999 5555554332       6679999999875542    445


Q ss_pred             hhcccc----cceeecCCCCHHH---HHHHHHHHHh-----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHH
Q 013567          190 ALGVDV----ENLIVCQPDNGEM---ALEIADRMCR-----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQ  257 (440)
Q Consensus       190 ~lGv~~----~~l~i~~~~~~ee---~l~~i~~l~~-----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~  257 (440)
                      .+++.+    +++.+.......+   ....+..++.     ..+++++++|+++..++ .++++. +  ....+.+.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~-~~~~~~-~--~~~~r~~~~~~  157 (231)
T 4a74_A           82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGR-G--ALAERQQKLAK  157 (231)
T ss_dssp             HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH-HHSCST-T--HHHHHHHHHHH
T ss_pred             HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc-cccCCC-c--chhHHHHHHHH
Confidence            566665    3666655544332   2334444444     67899999999988763 333331 0  11122334567


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccC
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKV  337 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~  337 (440)
                      ++..|..++++.|+|||+++|..+.            +|..|.+.++.++.+++..      .     ..+.+++.|+|.
T Consensus       158 ~~~~l~~~~~~~g~tvi~vtH~~~~------------~g~~~~~~~d~~l~l~~~~------~-----~~r~l~~~K~r~  214 (231)
T 4a74_A          158 HLADLHRLANLYDIAVFVTNQVQAN------------GGHILAHSATLRVYLRKGK------G-----GKRIARLIDAPH  214 (231)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEECC---------------------CCSEEEEEEECT------T-----SCEEEEEESCC-
T ss_pred             HHHHHHHHHHHCCCeEEEEeecccC------------cchhhHhhceEEEEEEecC------C-----CeEEEEEEeCCC
Confidence            7888889999999999999999764            7888999999999998732      1     235789999999


Q ss_pred             CCCCceEEEEEEeCCCcc
Q 013567          338 SRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       338 ~~p~~~~~~~i~~~~Gi~  355 (440)
                      .|+.. ..|.|. ++|+.
T Consensus       215 ~~~~~-~~f~i~-~~Gl~  230 (231)
T 4a74_A          215 LPEGE-AVFSIT-EKGIE  230 (231)
T ss_dssp             -CCSC-EEEEEE-TTEEE
T ss_pred             CCCce-EEEEEe-ccccc
Confidence            88776 489987 77763

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=99.88  E-value=5e-22  Score=209.24  Aligned_cols=219  Identities=14%  Similarity=0.130  Sum_probs=162.5

Q ss_pred             Ccccccc-CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhh----hhhhccc
Q 013567          121 LVETFPS-GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSY----SKALGVD  194 (440)
Q Consensus       121 ~~~~i~T-Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~----a~~lGv~  194 (440)
                      ...++|| |++.||.+| ||+++|++++|+|+||+||||||++++.+++.. +.+|+||++|++..+..    +...|++
T Consensus       220 ~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~  298 (503)
T 1q57_A          220 ESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR  298 (503)
T ss_dssp             CTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSC
T ss_pred             ccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCC
Confidence            4668999 999999999 799999999999999999999999999999886 88999999999876542    2334443


Q ss_pred             c--------------------------cceeecCC---CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchh
Q 013567          195 V--------------------------ENLIVCQP---DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGM  245 (440)
Q Consensus       195 ~--------------------------~~l~i~~~---~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~  245 (440)
                      .                          .++++.+.   .+.++++..++.+++..++++|||||++.+... . .   +.
T Consensus       299 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~-~---~~  373 (503)
T 1q57_A          299 LRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S-G---ES  373 (503)
T ss_dssp             CTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C-S---CC
T ss_pred             hhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C-C---CC
Confidence            3                          23555543   578899999999888889999999999988641 1 1   00


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccc-----cCCc--eeecccceeeeeceEEEEEeeccccccc
Q 013567          246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY-----YGNP--EVTSGGIALKFFASVRLEIRSTGKIKSV  318 (440)
Q Consensus       246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~-----~~~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~  318 (440)
                          .+.+.+.++++.|+.+++++|++||+++|+++ ....     -..|  ....|+..+.+.++..+.+.+.+.    
T Consensus       374 ----~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~----  444 (503)
T 1q57_A          374 ----DERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ----  444 (503)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSS----
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCc----
Confidence                22345788999999999999999999999987 2210     0111  234567788999999999988542    


Q ss_pred             CCCcccceEEEEEEeecc-CCCCCceEEE-EEEeCCCcccchhh
Q 013567          319 KGDEDVGVRVRVRVQKSK-VSRPYKQAEF-EIIFGEGVSKLGCM  360 (440)
Q Consensus       319 ~g~~~~G~~~~v~v~Knr-~~~p~~~~~~-~i~~~~Gi~~~~~i  360 (440)
                       ++. . ..+.+.|.||| ..+..   .+ .+.|......+.++
T Consensus       445 -~~~-~-~~~~l~v~K~R~~G~~g---~~~~l~f~~~~~~f~~~  482 (503)
T 1q57_A          445 -GDM-P-NLVLVRILKCRFTGDTG---IAGYMEYNKETGWLEPS  482 (503)
T ss_dssp             -SSC-T-TEEEEEEEEETTTCCCE---EEEEEEECTTTCCEEEE
T ss_pred             -CCC-C-CeEEEEEEeccCCCCCC---ceEEEEEEcCCceEecC
Confidence             111 1 24689999999 46432   33 66677665555444

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.85  E-value=4.2e-20  Score=172.66  Aligned_cols=203  Identities=20%  Similarity=0.253  Sum_probs=142.2

Q ss_pred             cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce--
Q 013567          123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL--  198 (440)
Q Consensus       123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l--  198 (440)
                      ++++||++.||.+++||+++|++++|+||||+|||||+.+++......++.++|++.+......  +...+|++++++  
T Consensus         3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (235)
T 2w0m_A            3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE   82 (235)
T ss_dssp             CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT
T ss_pred             ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh
Confidence            4799999999999988999999999999999999999888887777778899999998764432  233456655432  


Q ss_pred             ---eec-------------CCCCHHHHHHHHHHHHhcCCcc--eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHH
Q 013567          199 ---IVC-------------QPDNGEMALEIADRMCRSGAID--LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALR  260 (440)
Q Consensus       199 ---~i~-------------~~~~~ee~l~~i~~l~~~~~~~--lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~  260 (440)
                         .+.             ...+..++...+...+...+++  ++++|+++.+... +    ..         ...+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~-d----~~---------~~~~~~~  148 (235)
T 2w0m_A           83 KKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD-K----PA---------MARKISY  148 (235)
T ss_dssp             TTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS-C----GG---------GHHHHHH
T ss_pred             CCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC-C----HH---------HHHHHHH
Confidence               111             1225667666666666666889  9999999987631 1    00         1245666


Q ss_pred             HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP  340 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p  340 (440)
                      .|+.++++.++|||+++|..+.-..      .. + ..+.++++..+.+.+...     +++   ..+.+.|.|+|..+.
T Consensus       149 ~l~~~~~~~~~~vi~~~h~~~~~~~------~~-~-~~~~~~~d~vi~l~~~~~-----~~~---~~r~l~v~K~r~~~~  212 (235)
T 2w0m_A          149 YLKRVLNKWNFTIYATSQYAITTSQ------AF-G-FGVEHVADGIIRFRRMIR-----NGE---LHRYILIEKMRQTDH  212 (235)
T ss_dssp             HHHHHHHHTTEEEEEEEC-------------------CHHHHCSEEEEEEEEEE-----TTE---EEEEEEEEEETTCCC
T ss_pred             HHHHHHHhCCCeEEEEeccCccccc------cc-c-cchheeeeEEEEEEEEec-----CCc---EEEEEEEEeccCCcc
Confidence            7778888899999999999741110      01 1 356778888888887431     111   346899999997765


Q ss_pred             C-ceEEEEEEeCC-Cccc
Q 013567          341 Y-KQAEFEIIFGE-GVSK  356 (440)
Q Consensus       341 ~-~~~~~~i~~~~-Gi~~  356 (440)
                      . ....|+|. +. ||..
T Consensus       213 ~~~~~~f~i~-~~~Gi~~  229 (235)
T 2w0m_A          213 DKHVWEIDIV-NGKGIVL  229 (235)
T ss_dssp             CCSCEEEEEE-TTTEEEE
T ss_pred             cceeEEEEEc-CCCCeEE
Confidence            4 67889997 56 8854

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.84  E-value=7.9e-21  Score=184.95  Aligned_cols=217  Identities=21%  Similarity=0.298  Sum_probs=137.5

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----------CCcEEEEcCCCCCChh--hhh
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----------GGNAMLVDAEHAFDPS--YSK  189 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----------~~~vv~id~E~~~~~~--~a~  189 (440)
                      .++++||++.||.++ ||+++|++++|+||||+|||||+++++..+...          ++.++|++.|+.....  ++.
T Consensus        10 ~~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~   88 (279)
T 1nlf_A           10 LEAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLH   88 (279)
T ss_dssp             HHHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHH
T ss_pred             HHHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHH
Confidence            457999999999999 799999999999999999999999888866542          4679999999876543  344


Q ss_pred             hhcccc---------cceeecCCC-------CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHH
Q 013567          190 ALGVDV---------ENLIVCQPD-------NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQAR  253 (440)
Q Consensus       190 ~lGv~~---------~~l~i~~~~-------~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar  253 (440)
                      .+|.+.         +++.+.+..       +.. .+..+..++.  ++++||||+++.+.+..  +   ..      .+
T Consensus        89 ~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g-~~~~i~~l~~--~~~livlDe~~~~~~~d--~---~~------~~  154 (279)
T 1nlf_A           89 ALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPE-WFDGLKRAAE--GRRLMVLDTLRRFHIEE--E---NA------SG  154 (279)
T ss_dssp             HHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHH-HHHHHHHHHT--TCSEEEEECGGGGCCSC--T---TC------HH
T ss_pred             HHHhhcChhhhhhccCceEEeecCCCCcccCCHH-HHHHHHHhcC--CCCEEEECCHHHhcCCC--c---Cc------hH
Confidence            556543         344443321       222 2455555554  58999999999976421  1   10      12


Q ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCce---eecccceeeeeceEEEEEeecccc--cc-cCCCcccceE
Q 013567          254 LMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPE---VTSGGIALKFFASVRLEIRSTGKI--KS-VKGDEDVGVR  327 (440)
Q Consensus       254 ~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~---~~~gG~~l~~~a~~rl~l~r~~~i--k~-~~g~~~~G~~  327 (440)
                      .+.++++.|..++++.|+|||+++|.++... .+++..   ...|+.++.........+.+...-  +. .-+++..++.
T Consensus       155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~-~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~  233 (279)
T 1nlf_A          155 PMAQVIGRMEAIAADTGCSIVFLHHASKGAA-MMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFF  233 (279)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEEC---------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGE
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEecCCCccc-ccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcE
Confidence            3567788889999999999999999986542 233222   234556664322222223332210  00 0123345677


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      ++++|.|||.+||+....|.+. ..|+-
T Consensus       234 ~~~~v~K~~~~~~~~~~~~~~~-~~G~l  260 (279)
T 1nlf_A          234 VRFGVSKANYGAPFADRWFRRH-DGGVL  260 (279)
T ss_dssp             EEEEEEECSSSSCCCCEEEEEC-GGGCE
T ss_pred             EEeeeccccCCCCCCceEEEEc-CCeeE
Confidence            8999999999999987766664 56653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.75  E-value=3.5e-17  Score=160.21  Aligned_cols=202  Identities=15%  Similarity=0.177  Sum_probs=127.9

Q ss_pred             cccccc-CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhhh----hcccc
Q 013567          122 VETFPS-GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSKA----LGVDV  195 (440)
Q Consensus       122 ~~~i~T-Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~~----lGv~~  195 (440)
                      ..++|| |++.||.++ +|+++|++++|+||||+|||||+++++..+... +..++|++.|+...+...+.    .+++.
T Consensus        14 ~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~   92 (296)
T 1cr0_A           14 SVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL   92 (296)
T ss_dssp             CCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG
T ss_pred             cCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh
Confidence            558999 999999999 999999999999999999999977776666544 44799999987543221110    01111


Q ss_pred             --------------------------cceeecC---CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhh
Q 013567          196 --------------------------ENLIVCQ---PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQ  246 (440)
Q Consensus       196 --------------------------~~l~i~~---~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~  246 (440)
                                                .++.+.+   ..+..++...+.......++++++||+++.+....  . . .  
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~--~-~-~--  166 (296)
T 1cr0_A           93 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS--G-E-S--  166 (296)
T ss_dssp             GGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC---------------
T ss_pred             hhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC--C-C-C--
Confidence                                      1233433   25677777777665566789999999999876310  0 0 0  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc------cccCCceeecccceeeeeceEEEEEeecccccccCC
Q 013567          247 QIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG------VYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKG  320 (440)
Q Consensus       247 q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig------~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g  320 (440)
                         .....+..+++.|+.++++.++|||+++|..+..+      ..........|+..+.+.++..+.+.+...-     
T Consensus       167 ---d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~-----  238 (296)
T 1cr0_A          167 ---DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQG-----  238 (296)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--------
T ss_pred             ---CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCccc-----
Confidence               01123566778888899999999999999963110      0001112234566788899999999875421     


Q ss_pred             CcccceEEEEEEeeccC-CCC
Q 013567          321 DEDVGVRVRVRVQKSKV-SRP  340 (440)
Q Consensus       321 ~~~~G~~~~v~v~Knr~-~~p  340 (440)
                      +.  ...+.+.|.|+|. .+.
T Consensus       239 ~~--~~~~~l~i~K~R~~g~~  257 (296)
T 1cr0_A          239 DM--PNLVLVRILKCRFTGDT  257 (296)
T ss_dssp             ------CEEEEEEEETTTCCC
T ss_pred             CC--CCeEEEEEEccccCCCC
Confidence            10  1246899999995 654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.73  E-value=6.2e-17  Score=171.34  Aligned_cols=206  Identities=22%  Similarity=0.187  Sum_probs=145.9

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc--
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE--  196 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~--  196 (440)
                      .+++++||++.||.+|+||+++|++++|.|+||+|||||+.+++......+..++|+.++++..+.  .+.++|++.+  
T Consensus       259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~  338 (525)
T 1tf7_A          259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEM  338 (525)
T ss_dssp             CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHH
T ss_pred             ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHH
Confidence            456789999999999999999999999999999999999777666555556678999998875443  2344565532  


Q ss_pred             ----ceeecCC----CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 013567          197 ----NLIVCQP----DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK  268 (440)
Q Consensus       197 ----~l~i~~~----~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~  268 (440)
                          .+.+.+.    .+..+....+...+...+++++++|+++.+...  ..   +     .+   ....+..|...+++
T Consensus       339 ~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~---~-----~~---~~~~i~~ll~~l~~  405 (525)
T 1tf7_A          339 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--VS---N-----NA---FRQFVIGVTGYAKQ  405 (525)
T ss_dssp             HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SC---H-----HH---HHHHHHHHHHHHHH
T ss_pred             HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CC---h-----HH---HHHHHHHHHHHHHh
Confidence                2223221    355665555544455578999999988887642  11   1     11   34556666677788


Q ss_pred             cCCEEEEEeccccccccccCCceeeccc-ceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC-CceEEE
Q 013567          269 AGCTLIFLNQIRYKIGVYYGNPEVTSGG-IALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP-YKQAEF  346 (440)
Q Consensus       269 ~~~tVI~inhl~~~ig~~~~~~~~~~gG-~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p-~~~~~~  346 (440)
                      .|+|||+++|.....+.       ..+. ..+.+.++..+.+++.+.     +.   ...+.++|+|+|..+. ....+|
T Consensus       406 ~g~tvilvsh~~~~~~~-------~~~~~~~l~~~~D~vi~L~~ge~-----~~---~~~R~l~v~K~R~~~~~~~~~~f  470 (525)
T 1tf7_A          406 EEITGLFTNTSDQFMGA-------HSITDSHISTITDTIILLQYVEI-----RG---EMSRAINVFKMRGSWHDKAIREF  470 (525)
T ss_dssp             TTCEEEEEEECSSSSCC-------CSSCSSCCTTTCSEEEEEEEEEE-----TT---EEEEEEEEEEESSSCCCCBCEEE
T ss_pred             CCCEEEEEECcccccCc-------ccccCcccceeeeEEEEEEEEEe-----CC---EEEEEEEEEECCCCCCCCCEEEE
Confidence            89999999999754432       1222 556788899998887531     11   2456889999998887 577899


Q ss_pred             EEEeCCCcc
Q 013567          347 EIIFGEGVS  355 (440)
Q Consensus       347 ~i~~~~Gi~  355 (440)
                      +|. ++||.
T Consensus       471 ~i~-~~Gi~  478 (525)
T 1tf7_A          471 MIS-DKGPD  478 (525)
T ss_dssp             EEC-SSCEE
T ss_pred             EEc-CCCEE
Confidence            997 89996

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=99.63  E-value=1.9e-15  Score=145.89  Aligned_cols=73  Identities=15%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE  196 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~  196 (440)
                      .++||+++||.+|+||+++|.++.|.|.||+|||||++|++.+.++.+..++||+.+++....  .++.+|++++
T Consensus         2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~   76 (260)
T 3bs4_A            2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI   76 (260)
T ss_dssp             CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred             cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence            479999999999999999999999999999999999999999999999999999999988775  5677888864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.55  E-value=8.7e-14  Score=147.18  Aligned_cols=151  Identities=15%  Similarity=0.239  Sum_probs=105.3

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHH-HHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccc
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHA-IAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVEN  197 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~l-i~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~  197 (440)
                      .+.+++||++.||.+..||+++|++++|.||||||||||+..+ +.++..++.+++|+++++....  ..++.+|+.+++
T Consensus        17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~   96 (525)
T 1tf7_A           17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAK   96 (525)
T ss_dssp             SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred             ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence            4678999999999998789999999999999999999997666 5788887999999999874322  245678887654


Q ss_pred             ------eeecCCC------------CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHH
Q 013567          198 ------LIVCQPD------------NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQAL  259 (440)
Q Consensus       198 ------l~i~~~~------------~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l  259 (440)
                            +......            ..++........+..+.++++++|++.++.+...++         .   ..+..+
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD---------~---~~~~~l  164 (525)
T 1tf7_A           97 LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDAS---------S---VVRREL  164 (525)
T ss_dssp             HHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCH---------H---HHHHHH
T ss_pred             hhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCH---------H---HHHHHH
Confidence                  2222110            123333333333445678999999999887531111         0   112334


Q ss_pred             HHHHHHHHhcCCEEEEEecccccc
Q 013567          260 RKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       260 ~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ..+...+++.|+|||+++|..+.+
T Consensus       165 ~~ll~~l~~~g~tvl~itH~~~~~  188 (525)
T 1tf7_A          165 FRLVARLKQIGATTVMTTERIEEY  188 (525)
T ss_dssp             HHHHHHHHHHTCEEEEEEECSSSS
T ss_pred             HHHHHHHHHCCCEEEEEecCCCCc
Confidence            444444556799999999998754

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=99.52  E-value=5.5e-15  Score=146.22  Aligned_cols=130  Identities=18%  Similarity=0.135  Sum_probs=95.1

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC--CCCCChhhhhhhcccccceeec
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA--EHAFDPSYSKALGVDVENLIVC  201 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~--E~~~~~~~a~~lGv~~~~l~i~  201 (440)
                      .++||++.||.+| ||+++|.+++|+||||+|||+||++++..   .+..++|++.  ++..+          .     +
T Consensus       105 ~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~----------~-----~  165 (331)
T 2vhj_A          105 ELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS----------G-----Y  165 (331)
T ss_dssp             TCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST----------T-----C
T ss_pred             ccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh----------h-----h
Confidence            4789999999999 99999999999999999999999999876   5678899998  33211          0     1


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          202 QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       202 ~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                      + ...++++..+.+.+.+.+  ++|||++..+.+......     ..+.+.+.+++.++.|..++++.++++|++++..
T Consensus       166 ~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s-----~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~  236 (331)
T 2vhj_A          166 N-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNT-----TSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT  236 (331)
T ss_dssp             B-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred             h-cCHHHHHHHHHHHHhhCC--EEEEeccccccccccccc-----ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence            1 456666665555555444  999999999875322111     1223355678899999999999999999987743

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.48  E-value=8.1e-15  Score=147.89  Aligned_cols=251  Identities=13%  Similarity=0.191  Sum_probs=154.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---hhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---YSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.++++++.....   .   +.+.+|+.+++..++...++.+.+..
T Consensus        50 ~i~~Gei~~IiGpnGaGKSTL-lr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~  128 (366)
T 3tui_C           50 HVPAGQIYGVIGASGAGKSTL-IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL  128 (366)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEcCCCEEEEEcCCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence            478999999999999999999 9999999999999999998865432   1   24678999998877777677655433


Q ss_pred             H---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          213 A---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       213 i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                      .               .+++.     .+-++......+ .++++  |++|+...||++                     .
T Consensus       129 ~~~~~~~~~~~~~~~v~~lL~-----~vgL~~~~~~~~-~~LSG--GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~  200 (366)
T 3tui_C          129 PLELDNTPKDEVKRRVTELLS-----LVGLGDKHDSYP-SNLSG--GQKQRVAIARALASNPKVLLCDQATSALDPATTR  200 (366)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHH-----HHTCGGGTTCCT-TTSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence            2               22221     222333333343 56666  888988888887                     3


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEe---
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQ---  333 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~---  333 (440)
                      .++..|..+.++.|+|||+++|..+.+..+++.......|+.+.......++-.......    ...++.......-   
T Consensus       201 ~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~----~~~~~~~~~~~~~~~~  276 (366)
T 3tui_C          201 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA----QKFIQSTLHLDIPEDY  276 (366)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHH----HHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHH----HHHHhhcccccCchhh
Confidence            455556666677899999999998877666666666667766654432221111100000    0000000000000   


Q ss_pred             ecc---CCCCCceEEEEEEeCCCcccchhhhhHHHHcccee--ccCceEEeCceecc----------ccHHHHHHHHHhC
Q 013567          334 KSK---VSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVV--RKGAWYSYGDQRLG----------QGRDKALQYLRDN  398 (440)
Q Consensus       334 Knr---~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~--k~G~~~~~~~~~~g----------q~~~~~~~~L~e~  398 (440)
                      ..+   ...+.....+++.|.........+.+++.+.++-.  -.|+...+.+..+|          +..+++.+||+++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~il~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~  356 (366)
T 3tui_C          277 QERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH  356 (366)
T ss_dssp             HHHCBSSCCTTCCEEEEEEEEHHHHSSCHHHHHHHHHTCEEEEEEEEEEESSSCEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred             hhhhccccccCCCceEEEEecCcccchhHHHHHHHHcCCCeEEEEeeEEEECCEEEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            000   00112234566666544444555667777776532  26888888887777          2356789999987


Q ss_pred             cHHH
Q 013567          399 PLLQ  402 (440)
Q Consensus       399 ~~~~  402 (440)
                      ...+
T Consensus       357 ~~~~  360 (366)
T 3tui_C          357 HVKV  360 (366)
T ss_dssp             TEEE
T ss_pred             CCEE
Confidence            6443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.41  E-value=4.4e-13  Score=135.01  Aligned_cols=154  Identities=23%  Similarity=0.303  Sum_probs=110.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-----ChhhhhhhcccccceeecCCCCHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-----DPSYSKALGVDVENLIVCQPDNGEMALE--  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-----~~~~a~~lGv~~~~l~i~~~~~~ee~l~--  211 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++...     .+...+.+|+.+++..+++..++.+.+.  
T Consensus        26 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~  104 (359)
T 3fvq_A           26 SLDPGEILFIIGASGCGKTTL-LRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG  104 (359)
T ss_dssp             EECTTCEEEEEESTTSSHHHH-HHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred             EEcCCCEEEEECCCCchHHHH-HHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence            478999999999999999999 99999999999999999987541     1234567999998877766666655432  


Q ss_pred             -------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567          212 -------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA  258 (440)
Q Consensus       212 -------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~  258 (440)
                                   .+.++++     .+-++.+..-.+ .++++  |++|+...+|++                    +..
T Consensus       105 l~~~~~~~~~~~~~v~~~l~-----~~gL~~~~~r~~-~~LSG--Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~  176 (359)
T 3fvq_A          105 LGNGKGRTAQERQRIEAMLE-----LTGISELAGRYP-HELSG--GQQQRAALARALAPDPELILLDEPFSALDEQLRRQ  176 (359)
T ss_dssp             STTSSCCSHHHHHHHHHHHH-----HHTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHcCCChHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence                         2222222     222344444443 66776  888999889887                    334


Q ss_pred             H-HHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          259 L-RKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       259 l-~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      + ..|..+.++.|+|||+++|..+.+..+++.......|+....
T Consensus       177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~  220 (359)
T 3fvq_A          177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT  220 (359)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence            4 457777788899999999998766555555555666665543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.39  E-value=3.8e-13  Score=136.42  Aligned_cols=154  Identities=16%  Similarity=0.276  Sum_probs=111.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~-----  212 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+..     
T Consensus        25 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~  103 (381)
T 3rlf_A           25 DIHEGEFVVFVGPSGCGKSTL-LRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  103 (381)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred             EECCCCEEEEEcCCCchHHHH-HHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999 9999999999999999998865432 234678999998877777777655432     


Q ss_pred             ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                +.++++     .+-++.+..-.+ .++++  |++|+...+|++                     .+++..
T Consensus       104 ~~~~~~~~~~v~~~l~-----~~~L~~~~~r~p-~~LSG--GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~  175 (381)
T 3rlf_A          104 GAKKEVINQRVNQVAE-----VLQLAHLLDRKP-KALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE  175 (381)
T ss_dssp             TCCHHHHHHHHHHHHH-----HTTCGGGTTCCG-GGSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-----HcCCchhhcCCh-hHCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence                      222222     222344444443 66766  899999999987                     234455


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      |.++.++.|+|||+++|..+.+..+++.......|+....
T Consensus       176 l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~  215 (381)
T 3rlf_A          176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV  215 (381)
T ss_dssp             HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            6666677899999999998766555555555566655543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.36  E-value=3.6e-12  Score=121.21  Aligned_cols=134  Identities=19%  Similarity=0.269  Sum_probs=93.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.++++++......       +.+.+|+.+++..+++..++.+.+.
T Consensus        27 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~  105 (235)
T 3tif_A           27 NIKEGEFVSIMGPSGSGKSTM-LNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE  105 (235)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHH
Confidence            478999999999999999999 99999999999999999987543221       1345899888877666656655443


Q ss_pred             H------------------HHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          212 I------------------ADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       212 ~------------------i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                      .                  +.+++...+     ++. +.... ..++++  |++|+...+|++                 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~-~~~LSg--Gq~QRv~iAral~~~p~llllDEPts~LD  177 (235)
T 3tif_A          106 LPLIFKYRGAMSGEERRKRALECLKMAE-----LEERFANHK-PNQLSG--GQQQRVAIARALANNPPIILADQPTWALD  177 (235)
T ss_dssp             HHHHTCSSSCCCHHHHHHHHHHHHHHTT-----CCGGGTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             HHHHhhhccCCCHHHHHHHHHHHHHHCC-----CChhhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            2                  112221111     122 11222 356665  888988888887                 


Q ss_pred             ----HHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          256 ----SQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                          ..++..|..+.++.|.|||+++|..+
T Consensus       178 ~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~  207 (235)
T 3tif_A          178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence                34445555555667999999999976

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.35  E-value=1.1e-12  Score=131.88  Aligned_cols=157  Identities=20%  Similarity=0.237  Sum_probs=108.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++...+ +...+.+|+.+++..+++..++.+.+.......
T Consensus        22 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~  100 (348)
T 3d31_A           22 KVESGEYFVILGPTGAGKTLF-LELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (348)
T ss_dssp             EECTTCEEEEECCCTHHHHHH-HHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCccHHHH-HHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999 999999999999999999876533 234567999999887777778777655422211


Q ss_pred             hcC-------CcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhc
Q 013567          218 RSG-------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKA  269 (440)
Q Consensus       218 ~~~-------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~  269 (440)
                      ...       -.+.+-++.+....+ .++++  |++|+...+|++                     ..+...|..+.++.
T Consensus       101 ~~~~~~~v~~~l~~~~L~~~~~~~~-~~LSg--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~  177 (348)
T 3d31_A          101 KIKDPKRVLDTARDLKIEHLLDRNP-LTLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN  177 (348)
T ss_dssp             CCCCHHHHHHHHHHTTCTTTTTSCG-GGSCH--HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc
Confidence            000       011222333333332 56665  888888888887                     33444555556677


Q ss_pred             CCEEEEEeccccccccccCCceeeccccee
Q 013567          270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      ++|||+++|..+.+..+++.......|+..
T Consensus       178 g~tii~vTHd~~~~~~~adri~vl~~G~i~  207 (348)
T 3d31_A          178 KLTVLHITHDQTEARIMADRIAVVMDGKLI  207 (348)
T ss_dssp             TCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999987655455544455555554

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.34  E-value=2e-12  Score=130.34  Aligned_cols=153  Identities=18%  Similarity=0.232  Sum_probs=106.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI-----  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~-----  212 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+..     
T Consensus        25 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  103 (359)
T 2yyz_A           25 EVKDGEFVALLGPSGCGKTTT-LLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR  103 (359)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred             EEcCCCEEEEEcCCCchHHHH-HHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999 9999999999999999998764332 234678999888777666666655432     


Q ss_pred             ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                                +.++++     .+-++.+....+ .++++  |++|+...+|++                     ..+...
T Consensus       104 ~~~~~~~~~~v~~~l~-----~~~L~~~~~r~~-~~LSg--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  175 (359)
T 2yyz_A          104 RISKDEVEKRVVEIAR-----KLLIDNLLDRKP-TQLSG--GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE  175 (359)
T ss_dssp             CSHHHHTTHHHHHHHH-----HTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence                      222222     222344433332 56666  888888888887                     234444


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      |+.+.++.++|||+++|..+.+..+++.......|+...
T Consensus       176 l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~  214 (359)
T 2yyz_A          176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ  214 (359)
T ss_dssp             HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            555666779999999999876655555555555565543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.33  E-value=1.4e-12  Score=131.34  Aligned_cols=158  Identities=20%  Similarity=0.242  Sum_probs=108.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+.......
T Consensus        37 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~  115 (355)
T 1z47_A           37 QIREGEMVGLLGPSGSGKTTI-LRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK  115 (355)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred             EECCCCEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999 9999999999999999998764322 24567899998877776667766554321110


Q ss_pred             h----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567          218 R----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA  266 (440)
Q Consensus       218 ~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la  266 (440)
                      .          ..-.+.+-++.+....+ .++++  |++|+...+|++                     .++...|+.+.
T Consensus       116 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  192 (355)
T 1z47_A          116 RVPKDEMDARVRELLRFMRLESYANRFP-HELSG--GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH  192 (355)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhcCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            0          00011222344443332 56666  888998888887                     23444555666


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      ++.++|||+++|..+.+..+++.......|+...
T Consensus       193 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  226 (355)
T 1z47_A          193 DEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ  226 (355)
T ss_dssp             HHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            6779999999999876655555555555565543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.33  E-value=1.9e-12  Score=130.70  Aligned_cols=158  Identities=18%  Similarity=0.253  Sum_probs=107.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.+++++...... ...+.+|+.+++..+++..++.+.+.......
T Consensus        25 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  103 (362)
T 2it1_A           25 KIKDGEFMALLGPSGSGKSTL-LYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR  103 (362)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred             EECCCCEEEEECCCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999 9999999999999999998764332 23467899998877776667766554321110


Q ss_pred             h----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567          218 R----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA  266 (440)
Q Consensus       218 ~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la  266 (440)
                      .          ..-.+.+-++.+..-.+ .++++  |++|+...+|++                     ..+...|..+.
T Consensus       104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  180 (362)
T 2it1_A          104 KAPREEIDKKVREVAKMLHIDKLLNRYP-WQLSG--GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ  180 (362)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCTTCTTCCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhhCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            0          00011222344433332 56666  888998889887                     23444555566


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      ++.++|||+++|..+.+..+++.......|+...
T Consensus       181 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  214 (362)
T 2it1_A          181 KELGITTVYVTHDQAEALAMADRIAVIREGEILQ  214 (362)
T ss_dssp             HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            6779999999999876655555555555565543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.32  E-value=2.4e-12  Score=130.33  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=101.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHH------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALE------  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~------  211 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+.      
T Consensus        33 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  111 (372)
T 1v43_A           33 TIKDGEFLVLLGPSGCGKTTT-LRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK  111 (372)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999 9999999999999999998764332 23467898888776665556554432      


Q ss_pred             ---------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          212 ---------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       212 ---------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                               .+.++++     .+-++.+....+ .++++  |++|+...+|++                     .++...
T Consensus       112 ~~~~~~~~~~v~~~l~-----~~~L~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  183 (372)
T 1v43_A          112 KFPKDEIDKRVRWAAE-----LLQIEELLNRYP-AQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE  183 (372)
T ss_dssp             CCCHHHHHHHHHHHHH-----HTTCGGGTTSCT-TTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-----HcCChhHhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence                     2223322     222334433333 56666  888888888887                     234445


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      |+.+.++.++|||+++|..+.+..+++.......|+..
T Consensus       184 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~  221 (372)
T 1v43_A          184 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL  221 (372)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            55566677999999999987655455544555555554

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.31  E-value=1.5e-12  Score=131.98  Aligned_cols=158  Identities=15%  Similarity=0.245  Sum_probs=107.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++...+       +...+.+|+.+++..+++..++.+.+.
T Consensus        25 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~  103 (372)
T 1g29_1           25 EVKDGEFMILLGPSGCGKTTT-LRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (372)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCcHHHHH-HHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence            467999999999999999999 999999999999999999875422       123467899998877777677766554


Q ss_pred             HHHHHHh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567          212 IADRMCR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR  260 (440)
Q Consensus       212 ~i~~l~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~  260 (440)
                      .......          ..-.+.+-++.+....+ .++++  |++|+...+|++                     .++..
T Consensus       104 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~  180 (372)
T 1g29_1          104 FPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA  180 (372)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-GGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-ccCCH--HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence            3211100          00012222344443332 56666  888998888887                     23444


Q ss_pred             HHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      .|..+.++.++|||+++|..+.+..+++.......|+...
T Consensus       181 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  220 (372)
T 1g29_1          181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ  220 (372)
T ss_dssp             HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence            5556666779999999999876655555555555565543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.31  E-value=9.4e-12  Score=121.10  Aligned_cols=150  Identities=15%  Similarity=0.200  Sum_probs=96.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-h----hhhhhhccccccee--ecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-P----SYSKALGVDVENLI--VCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~----~~a~~lGv~~~~l~--i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.++++++.... .    .+.+.+|+.+++..  +. ..++.+.+.
T Consensus        30 ~i~~Ge~~~iiGpnGsGKSTL-l~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~  107 (275)
T 3gfo_A           30 NIKRGEVTAILGGNGVGKSTL-FQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVS  107 (275)
T ss_dssp             EEETTSEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHH
Confidence            478999999999999999999 999999999999999999886531 1    24567888887642  22 334443322


Q ss_pred             ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                                     .+.+++...     -++.+.... ..++++  |++|+...||++                     
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~-----~L~~~~~~~-~~~LSg--GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~  179 (275)
T 3gfo_A          108 FGAVNMKLPEDEIRKRVDNALKRT-----GIEHLKDKP-THCLSF--GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV  179 (275)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHT-----TCGGGTTSB-GGGSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHc-----CCchhhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence                           222222221     123333332 255555  788888888876                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccce
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                      ..++..|..+.++.|+|||+++|..+.+..+++.......|+.
T Consensus       180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i  222 (275)
T 3gfo_A          180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV  222 (275)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEE
T ss_pred             HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence            2344444555435599999999998876554443333334433

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.30  E-value=1.5e-12  Score=131.19  Aligned_cols=152  Identities=19%  Similarity=0.259  Sum_probs=105.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC------hhhhhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD------PSYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~------~~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|+++.|.|||||||||| +++++++.++..|.++++++....      +...+.+|+.+++..+++..++.+.+..
T Consensus        27 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  105 (353)
T 1oxx_K           27 NIENGERFGILGPSGAGKTTF-MRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF  105 (353)
T ss_dssp             EECTTCEEEEECSCHHHHHHH-HHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred             EECCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence            478999999999999999999 999999999999999999865322      2245678888887766655566554332


Q ss_pred             ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                                     +.++++     .+-++.+....+ .++++  |++|+...+|++                     .
T Consensus       106 ~~~~~~~~~~~~~~~v~~~l~-----~~~L~~~~~~~~-~~LSG--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~  177 (353)
T 1oxx_K          106 PLTNMKMSKEEIRKRVEEVAK-----ILDIHHVLNHFP-RELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMRD  177 (353)
T ss_dssp             GGTTSSCCHHHHHHHHHHHHH-----HTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence                           222222     222334433332 56666  888888888887                     3


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      ++...|+.+.++.++|||+++|..+.+..+++.......|+..
T Consensus       178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~  220 (353)
T 1oxx_K          178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV  220 (353)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            4444555666678999999999987665555555555555554

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.30  E-value=4.6e-12  Score=122.03  Aligned_cols=146  Identities=20%  Similarity=0.236  Sum_probs=93.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.+++++......  .+.+.+|+.+++..+....++.+.+.....+
T Consensus        37 ~i~~Gei~~l~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~  115 (256)
T 1vpl_A           37 EIEEGEIFGLIGPNGAGKTTT-LRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF  115 (256)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH
T ss_pred             EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHH
Confidence            478999999999999999999 9999999999999999998754322  2456688888877666555666554432111


Q ss_pred             Hhc----------CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CRS----------GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~~----------~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ...          .-.+.+-++...... ..++++  |++|+...++++                    ...+..+....
T Consensus       116 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l  192 (256)
T 1vpl_A          116 YASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSK--GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA  192 (256)
T ss_dssp             HCCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHCCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence            000          001112223222222 245554  788888888876                    22333333333


Q ss_pred             HhcCCEEEEEeccccccccccC
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~  288 (440)
                      ++.+.|||+++|..+.+...++
T Consensus       193 ~~~g~tiiivtHd~~~~~~~~d  214 (256)
T 1vpl_A          193 SQEGLTILVSSHNMLEVEFLCD  214 (256)
T ss_dssp             HHTTCEEEEEECCHHHHTTTCS
T ss_pred             HhCCCEEEEEcCCHHHHHHHCC
Confidence            4459999999999876554333

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.29  E-value=3.1e-12  Score=123.79  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=93.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch-hhhhhhcccccceeecCCCCHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP-SYSKALGVDVENLIVCQPDNGEMALEIA  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i  213 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.+++++....    .. .+.+.+|+.+++..++...++.+.+...
T Consensus        46 ~i~~Gei~~liG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~  124 (263)
T 2olj_A           46 HIREGEVVVVIGPSGSGKSTF-LRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA  124 (263)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred             EEcCCCEEEEEcCCCCcHHHH-HHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence            478999999999999999999 99999999999999999986542    11 2356789888877666555665554331


Q ss_pred             ----------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          214 ----------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       214 ----------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                                      .++++.     +-++...... ..++++  |++|+...+|++                     .
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~-----~~L~~~~~~~-~~~LSg--GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~  196 (263)
T 2olj_A          125 PMKVRKWPREKAEAKAMELLDK-----VGLKDKAHAY-PDSLSG--GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG  196 (263)
T ss_dssp             HHHTSCCCHHHHHHHHHHHHHH-----TTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHH-----CCCchHhcCC-hhhCCH--HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence                            111111     1122222222 245555  888888888877                     2


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      .++..|..+.++ +.|||+++|..+.+...++
T Consensus       197 ~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d  227 (263)
T 2olj_A          197 EVLSVMKQLANE-GMTMVVVTHEMGFAREVGD  227 (263)
T ss_dssp             HHHHHHHHHHHT-TCEEEEECSCHHHHHHHCS
T ss_pred             HHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCC
Confidence            334444444444 9999999999776544333

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.29  E-value=9.2e-12  Score=120.59  Aligned_cols=153  Identities=15%  Similarity=0.150  Sum_probs=94.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALE----  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~----  211 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++......   .+.+.+++.+++..+..+.++.+.+.    
T Consensus        33 ~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  111 (266)
T 4g1u_C           33 HIASGEMVAIIGPNGAGKSTL-LRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA  111 (266)
T ss_dssp             EEETTCEEEEECCTTSCHHHH-HHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhh
Confidence            478999999999999999999 9999999999999999998765432   24556777776554433444443322    


Q ss_pred             ---------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHH-------------------------
Q 013567          212 ---------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQ-------------------------  257 (440)
Q Consensus       212 ---------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~-------------------------  257 (440)
                               .+.+++...+     ++.+..-. ..++++  |++|+...+|++..                         
T Consensus       112 ~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~  183 (266)
T 4g1u_C          112 PYGGSQDRQALQQVMAQTD-----CLALAQRD-YRVLSG--GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ  183 (266)
T ss_dssp             TSCSTTHHHHHHHHHHHTT-----CSTTTTSB-GGGCCH--HHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHH
T ss_pred             hcCcHHHHHHHHHHHHHcC-----ChhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHH
Confidence                     1122211111     11111111 133444  66666666665532                         


Q ss_pred             --HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          258 --ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       258 --~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                        ++..|..+.++.++|||+++|..+.+..+++.......|+...
T Consensus       184 ~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~  228 (266)
T 4g1u_C          184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA  228 (266)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence              3444455555667899999999876655555444555555543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.28  E-value=2.8e-12  Score=123.90  Aligned_cols=137  Identities=20%  Similarity=0.209  Sum_probs=92.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC------------Ch----hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF------------DP----SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~------------~~----~~a~~lGv~~~~l~i~~  202 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.+++++....            ..    .+.+.+|+.+++..++.
T Consensus        28 ~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~  106 (262)
T 1b0u_A           28 QARAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  106 (262)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCC
Confidence            478999999999999999999 99999999999999999987543            11    23456899888866666


Q ss_pred             CCCHHHHHHHH----------------HHHHhcCCcceEEEecc-cccCCchhhcccchhhhHHHHHHHH----------
Q 013567          203 PDNGEMALEIA----------------DRMCRSGAIDLICVDSV-SALTPRAEIEGEIGMQQIGLQARLM----------  255 (440)
Q Consensus       203 ~~~~ee~l~~i----------------~~l~~~~~~~lvVIDsl-~~l~~~~el~~~~g~~q~~~~ar~l----------  255 (440)
                      ..++.+.+...                .++++     .+-++.. .... ..++++  |++|+...+|++          
T Consensus       107 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~L~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLD  178 (262)
T 1b0u_A          107 HMTVLENVMEAPIQVLGLSKHDARERALKYLA-----KVGIDERAQGKY-PVHLSG--GQQQRVSIARALAMEPDVLLFD  178 (262)
T ss_dssp             TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-----HTTCCHHHHTSC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHH-----HcCCCchhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEe
Confidence            65665554431                11111     1112222 2222 255665  888888888887          


Q ss_pred             -----------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567          256 -----------SQALRKMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       256 -----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                                 ..++..|..+.+ .|.|||+++|..+.+..
T Consensus       179 EPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~~~  218 (262)
T 1b0u_A          179 EPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARH  218 (262)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHH
Confidence                       233344444444 49999999999775543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.28  E-value=4e-12  Score=120.00  Aligned_cols=135  Identities=16%  Similarity=0.214  Sum_probs=90.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------h-hhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------Y-SKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~-a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.+++++.......      + .+.+|+.+++..++...++.+.+.
T Consensus        26 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~  104 (224)
T 2pcj_A           26 SVKKGEFVSIIGASGSGKSTL-LYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI  104 (224)
T ss_dssp             EEETTCEEEEEECTTSCHHHH-HHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence            478999999999999999999 99999999999999999987643211      1 256899888876666566655443


Q ss_pred             HH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          212 IA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       212 ~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                      ..               .++++.     +-++...... ..++++  |++|+...++++                     
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~  176 (224)
T 2pcj_A          105 VPMLKMGKPKKEAKERGEYLLSE-----LGLGDKLSRK-PYELSG--GEQQRVAIARALANEPILLFADEPTGNLDSANT  176 (224)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHH-----TTCTTCTTCC-GGGSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHH-----cCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence            32               111111     1122222222 245555  778887777776                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ..++..|..+.++ |.|||+++|..+.+
T Consensus       177 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~  203 (224)
T 2pcj_A          177 KRVMDIFLKINEG-GTSIVMVTHERELA  203 (224)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHC-CCEEEEEcCCHHHH
Confidence            2333444444444 99999999997644

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.26  E-value=1.9e-11  Score=116.60  Aligned_cols=137  Identities=12%  Similarity=0.156  Sum_probs=92.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHH------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALE------  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~------  211 (440)
                      -+++ ++++|.|||||||||| +++++++.++..|.+++++...... ...+.+|+.+++..++...++.+.+.      
T Consensus        21 ~i~~-e~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~   98 (240)
T 2onk_A           21 EMGR-DYCVLLGPTGAGKSVF-LELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV   98 (240)
T ss_dssp             EECS-SEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred             EECC-EEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence            4788 9999999999999999 9999999999999999998654321 23456888888766555555544432      


Q ss_pred             -------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHH
Q 013567          212 -------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMS  263 (440)
Q Consensus       212 -------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~  263 (440)
                             .+.++++..+     ++...... ..++++  |++|+...+|++                     ..++..|.
T Consensus        99 ~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--GqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~  170 (240)
T 2onk_A           99 ERVERDRRVREMAEKLG-----IAHLLDRK-PARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR  170 (240)
T ss_dssp             CHHHHHHHHHHHHHTTT-----CTTTTTCC-GGGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcC-----CHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence                   1222332222     22222222 245655  888888888887                     23444445


Q ss_pred             HHHHhcCCEEEEEecccccccc
Q 013567          264 GNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       264 ~lak~~~~tVI~inhl~~~ig~  285 (440)
                      .+.++.|.|||+++|..+.+..
T Consensus       171 ~l~~~~g~tvi~vtHd~~~~~~  192 (240)
T 2onk_A          171 FVQREFDVPILHVTHDLIEAAM  192 (240)
T ss_dssp             HHHHHHTCCEEEEESCHHHHHH
T ss_pred             HHHHhcCCEEEEEeCCHHHHHH
Confidence            5555669999999999765543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.26  E-value=2.4e-11  Score=116.92  Aligned_cols=140  Identities=16%  Similarity=0.178  Sum_probs=88.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALE---  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~---  211 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++......    .+.+.+|+.+++..++...++.+.+.   
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~  107 (257)
T 1g6h_A           29 SVNKGDVTLIIGPNGSGKSTL-INVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE  107 (257)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence            478999999999999999999 9999999999999999998754321    12345787777654443333333322   


Q ss_pred             -------------------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567          212 -------------------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------  255 (440)
Q Consensus       212 -------------------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------  255 (440)
                                               .+.++++..+     ++....-. ..++++  |++|+...++++           
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--GqkQrv~iAraL~~~p~lllLDE  179 (257)
T 1g6h_A          108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----LSHLYDRK-AGELSG--GQMKLVEIGRALMTNPKMIVMDE  179 (257)
T ss_dssp             TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----CGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEES
T ss_pred             hhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----CchhhCCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeC
Confidence                                     1222222111     22222222 244554  778888777776           


Q ss_pred             ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                                ..++..|..+. +.|.|||+++|..+.+...++
T Consensus       180 Pts~LD~~~~~~l~~~l~~l~-~~g~tvi~vtHd~~~~~~~~d  221 (257)
T 1g6h_A          180 PIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRLDIVLNYID  221 (257)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECSCCSTTGGGCS
T ss_pred             CccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCC
Confidence                      23333444443 449999999999876654333

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.26  E-value=1.4e-11  Score=119.22  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=89.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccce-eecCCCCHHHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENL-IVCQPDNGEMALEIA----  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l-~i~~~~~~ee~l~~i----  213 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++.......+.+.+|+.+++. ......++.+.+...    
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~  107 (266)
T 2yz2_A           29 VINEGECLLVAGNTGSGKSTL-LQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF  107 (266)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence            478999999999999999999 99999999999999999886543223455688888763 222334555444321    


Q ss_pred             ----------HHHHhcCCcceEEEe--cccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567          214 ----------DRMCRSGAIDLICVD--SVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR  260 (440)
Q Consensus       214 ----------~~l~~~~~~~lvVID--sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~  260 (440)
                                .+++..     +-++  ...... ..++++  |++|+...++++                     ..++.
T Consensus       108 ~~~~~~~~~~~~~l~~-----~gl~~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~  179 (266)
T 2yz2_A          108 YPDRDPVPLVKKAMEF-----VGLDFDSFKDRV-PFFLSG--GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR  179 (266)
T ss_dssp             CTTSCSHHHHHHHHHH-----TTCCHHHHTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-----cCcCCcccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH
Confidence                      111111     1122  222222 245555  788888888877                     23344


Q ss_pred             HHHHHHHhcCCEEEEEecccccccc
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGV  285 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~  285 (440)
                      .|..+.++ +.|||+++|..+.+..
T Consensus       180 ~l~~l~~~-g~tii~vtHd~~~~~~  203 (266)
T 2yz2_A          180 IVEKWKTL-GKTVILISHDIETVIN  203 (266)
T ss_dssp             HHHHHHHT-TCEEEEECSCCTTTGG
T ss_pred             HHHHHHHc-CCEEEEEeCCHHHHHH
Confidence            44444444 9999999999876543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.19  E-value=4.3e-11  Score=116.66  Aligned_cols=150  Identities=15%  Similarity=0.157  Sum_probs=92.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--C--h-hhhhhhcccccceeec--CCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--D--P-SYSKALGVDVENLIVC--QPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~--~-~~a~~lGv~~~~l~i~--~~~~~ee~l~  211 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.+++++....  .  . .+.+.+|+.+++..+.  ...++.+.+.
T Consensus        43 ~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~  121 (279)
T 2ihy_A           43 QIAKGDKWILYGLNGAGKTTL-LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI  121 (279)
T ss_dssp             EEETTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Confidence            478999999999999999999 99999999999999999987543  1  1 2445677776653321  1123333221


Q ss_pred             -------------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567          212 -------------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------------  255 (440)
Q Consensus       212 -------------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------------  255 (440)
                                         .+.++++..+     ++...... ..++++  |++|+...+|++                 
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lLlLDEPts~LD  193 (279)
T 2ihy_A          122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVG-----MSAKAQQY-IGYLST--GEKQRVMIARALMGQPQVLILDEPAAGLD  193 (279)
T ss_dssp             TTC---------CCHHHHHHHHHHHHHTT-----CGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred             hhhhhccccccCCcHHHHHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence                               1222222111     22222222 245554  777887777776                 


Q ss_pred             ----HHHHHHHHHHHHhcCCEE--EEEeccccccccccCCceeecccce
Q 013567          256 ----SQALRKMSGNASKAGCTL--IFLNQIRYKIGVYYGNPEVTSGGIA  298 (440)
Q Consensus       256 ----~~~l~~L~~lak~~~~tV--I~inhl~~~ig~~~~~~~~~~gG~~  298 (440)
                          ..++..|..+.++ |.||  |+++|..+.+...++.......|+.
T Consensus       194 ~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i  241 (279)
T 2ihy_A          194 FIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQS  241 (279)
T ss_dssp             HHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence                2333444444444 8999  9999998766554444334444443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.19  E-value=1.7e-11  Score=119.08  Aligned_cols=140  Identities=16%  Similarity=0.223  Sum_probs=87.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEIA--  213 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~i--  213 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++.....   ..+.+.+|+.+++..++. .++.+.+...  
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~  118 (271)
T 2ixe_A           41 TLYPGKVTALVGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLT  118 (271)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCS
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcc
Confidence            478999999999999999999 999999999999999999865322   124567888888765554 3554443221  


Q ss_pred             --------HHHHhcCCcc-e---E--EEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HH
Q 013567          214 --------DRMCRSGAID-L---I--CVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QA  258 (440)
Q Consensus       214 --------~~l~~~~~~~-l---v--VIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~  258 (440)
                              ........+. +   +  -++....-. ..++++  |++|+...+|++                    . .+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-~~~LSg--Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i  195 (271)
T 2ixe_A          119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-GNQLSG--GQRQAVALARALIRKPRLLILDNATSALDAGNQLRV  195 (271)
T ss_dssp             SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-GTTSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-cCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence                    0000000000 0   0  011111111 234554  888888888887                    2 23


Q ss_pred             HHHHHHHHHhcCCEEEEEecccccc
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      +..|..+.++.+.|||+++|..+.+
T Consensus       196 ~~~l~~~~~~~g~tviivtHd~~~~  220 (271)
T 2ixe_A          196 QRLLYESPEWASRTVLLITQQLSLA  220 (271)
T ss_dssp             HHHHHHCTTTTTSEEEEECSCHHHH
T ss_pred             HHHHHHHHhhcCCEEEEEeCCHHHH
Confidence            3333333344589999999997654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.19  E-value=1.1e-11  Score=118.27  Aligned_cols=141  Identities=17%  Similarity=0.201  Sum_probs=88.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEI--  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~--  212 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.+++++......   .+ .+.+|+.+++..++...++.+.+..  
T Consensus        28 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~  106 (240)
T 1ji0_A           28 KVPRGQIVTLIGANGAGKTTT-LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence            478999999999999999999 9999999999999999998754321   12 3348888877655544455443322  


Q ss_pred             ------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHH
Q 013567          213 ------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQAL  259 (440)
Q Consensus       213 ------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l  259 (440)
                                  +++++...+    -++....-. ..++++  |++|+...+|++                     ..++
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~----~l~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~  179 (240)
T 1ji0_A          107 YNRKDKEGIKRDLEWIFSLFP----RLKERLKQL-GGTLSG--GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF  179 (240)
T ss_dssp             TTCCCSSHHHHHHHHHHHHCH----HHHTTTTSB-SSSSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHcc----cHhhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence                        111111000    012221111 134444  777777777776                     2333


Q ss_pred             HHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          260 RKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       260 ~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      ..|..+ ++.|.|||+++|..+.+...++
T Consensus       180 ~~l~~~-~~~g~tvi~vtHd~~~~~~~~d  207 (240)
T 1ji0_A          180 EVIQKI-NQEGTTILLVEQNALGALKVAH  207 (240)
T ss_dssp             HHHHHH-HHTTCCEEEEESCHHHHHHHCS
T ss_pred             HHHHHH-HHCCCEEEEEecCHHHHHHhCC
Confidence            334444 3468999999999765543333

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.17  E-value=1.2e-11  Score=116.05  Aligned_cols=138  Identities=18%  Similarity=0.157  Sum_probs=90.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++....  .+.+.+++.+++..++...++.+.+........
T Consensus        31 ~i~~Ge~~~iiG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~  107 (214)
T 1sgw_A           31 TIEKGNVVNFHGPNGIGKTTL-LKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG  107 (214)
T ss_dssp             EEETTCCEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence            478999999999999999999 99999999999999999886543  345678888887766655566665543221100


Q ss_pred             -cCC-------cceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH-HHHHHHHHHHhc
Q 013567          219 -SGA-------IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ-ALRKMSGNASKA  269 (440)
Q Consensus       219 -~~~-------~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~-~l~~L~~lak~~  269 (440)
                       ...       .+.+-++.. ... ..++++  |++|+...++++                    .. ++..|..+ ++.
T Consensus       108 ~~~~~~~~~~~l~~~gl~~~-~~~-~~~LSg--Gqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~-~~~  182 (214)
T 1sgw_A          108 VKVNKNEIMDALESVEVLDL-KKK-LGELSQ--GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI-LKE  182 (214)
T ss_dssp             CCCCHHHHHHHHHHTTCCCT-TSB-GGGSCH--HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH-HHH
T ss_pred             CchHHHHHHHHHHHcCCCcC-CCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH-HhC
Confidence             000       001112222 111 244554  788888888776                    23 33334444 344


Q ss_pred             CCEEEEEeccccccc
Q 013567          270 GCTLIFLNQIRYKIG  284 (440)
Q Consensus       270 ~~tVI~inhl~~~ig  284 (440)
                      +.|||+++|..+.+.
T Consensus       183 g~tiiivtHd~~~~~  197 (214)
T 1sgw_A          183 KGIVIISSREELSYC  197 (214)
T ss_dssp             HSEEEEEESSCCTTS
T ss_pred             CCEEEEEeCCHHHHH
Confidence            899999999987554

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.15  E-value=1.8e-10  Score=110.44  Aligned_cols=142  Identities=18%  Similarity=0.212  Sum_probs=85.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEV--QKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~--~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| ++++.++  .++..|.+++++......   .+ ...+++.+++..++...++.+.+..
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  103 (250)
T 2d2e_A           25 VVPKGEVHALMGPNGAGKSTL-GKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL  103 (250)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence            478999999999999999999 9999998  678889999998754322   12 2236777777666655566655433


Q ss_pred             HHHHHhcC-------------CcceEEEe-cccccCCchh-hcccchhhhHHHHHHHH--------------------HH
Q 013567          213 ADRMCRSG-------------AIDLICVD-SVSALTPRAE-IEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       213 i~~l~~~~-------------~~~lvVID-sl~~l~~~~e-l~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                      ........             -.+.+-++ .+....+ .+ +++  |++|+...+|++                    ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~  180 (250)
T 2d2e_A          104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-NEGFSG--GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK  180 (250)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-TCC------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred             HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-ccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence            21100000             00111121 2222221 33 665  888998888887                    22


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      .+..+....++.+.|||+++|..+.+.
T Consensus       181 ~l~~~l~~l~~~g~tvi~vtHd~~~~~  207 (250)
T 2d2e_A          181 VVARGVNAMRGPNFGALVITHYQRILN  207 (250)
T ss_dssp             HHHHHHHHHCSTTCEEEEECSSSGGGG
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            333333333345899999999976554

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.14  E-value=8.9e-11  Score=112.37  Aligned_cols=68  Identities=21%  Similarity=0.310  Sum_probs=53.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++.....  . .+.+.+|+.+++..++. .++.+
T Consensus        31 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e  101 (247)
T 2ff7_A           31 SIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIID  101 (247)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHH
Confidence            478999999999999999999 999999999999999999875432  1 24566888887655543 24443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.12  E-value=1.3e-10  Score=111.41  Aligned_cols=66  Identities=15%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNG  206 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~  206 (440)
                      -+++|++++|.|||||||||| ++++.++.++. |.+++++.....   ..+.+.+|+.+++..++...++
T Consensus        22 ~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   90 (249)
T 2qi9_C           22 EVRAGEILHLVGPNGAGKSTL-LARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV   90 (249)
T ss_dssp             EEETTCEEEEECCTTSSHHHH-HHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence            478999999999999999999 99999999998 999998864321   1245567887776544433333

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.11  E-value=1.7e-10  Score=110.83  Aligned_cols=37  Identities=27%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML  176 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~  176 (440)
                      -+++|++++|.|||||||||| +++++++.++..|.++
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~   63 (253)
T 2nq2_C           27 DLNKGDILAVLGQNGCGKSTL-LDLLLGIHRPIQGKIE   63 (253)
T ss_dssp             EEETTCEEEEECCSSSSHHHH-HHHHTTSSCCSEEEEE
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEE
Confidence            478999999999999999999 9999999988888776

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.10  E-value=2.5e-10  Score=110.49  Aligned_cols=138  Identities=12%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCC--h-hh-hhhhcccccceeecCCCCHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFD--P-SY-SKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~--~-~~-a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      -+++|++++|.|||||||||| +++++++.  .+..|.+++++.....  . .+ ...+++.+++..++...++.+.+..
T Consensus        42 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~  120 (267)
T 2zu0_C           42 DVHPGEVHAIMGPNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT  120 (267)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence            478999999999999999999 99999984  5778999998865322  1 12 2346777777665555555444332


Q ss_pred             H----------------------HHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567          213 A----------------------DRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------  255 (440)
Q Consensus       213 i----------------------~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------  255 (440)
                      .                      .+++..     +-++ .+....+...+++  |++|+...+|++              
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~~~~~~LSg--Gq~QRv~iAraL~~~p~lLlLDEPts  193 (267)
T 2zu0_C          121 ALNAVRSYRGQETLDRFDFQDLMEEKIAL-----LKMPEDLLTRSVNVGFSG--GEKKRNDILQMAVLEPELCILDESDS  193 (267)
T ss_dssp             HHHHHHHGGGCCCCCHHHHHHHHHHHHHH-----TTCCTTTTTSBTTTTCCH--HHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred             HHHhhhhhhccccCCHHHHHHHHHHHHHH-----cCCChhHhcCCcccCCCH--HHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            1                      111111     1121 1211111113665  889999989887              


Q ss_pred             ------HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                            ...+..+....++.+.|||+++|..+.+.
T Consensus       194 ~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~  228 (267)
T 2zu0_C          194 GLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILD  228 (267)
T ss_dssp             TCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGG
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHH
Confidence                  22333333333345899999999976553

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.05  E-value=1.1e-10  Score=115.10  Aligned_cols=62  Identities=18%  Similarity=0.390  Sum_probs=52.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|+|||||||||| ++++.++..+..|.+++++......   .+.+.+|+.+++..++
T Consensus        76 ~i~~Ge~vaivG~sGsGKSTL-l~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf  140 (306)
T 3nh6_A           76 TVMPGQTLALVGPSGAGKSTI-LRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF  140 (306)
T ss_dssp             EECTTCEEEEESSSCHHHHHH-HHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC
T ss_pred             EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC
Confidence            478999999999999999999 9999999999999999998765433   2566789888876554

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.02  E-value=4.7e-10  Score=108.11  Aligned_cols=67  Identities=15%  Similarity=0.272  Sum_probs=50.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|.|||||||||| ++++.++..+ .|.+++++.....   ..+.+.+++.+++..++. .++.+
T Consensus        42 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e  111 (260)
T 2ghi_A           42 FIPSGTTCALVGHTGSGKSTI-AKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKY  111 (260)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHH
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHH
Confidence            478999999999999999999 9999999876 7999998865321   124556888887665543 24443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.00  E-value=1.6e-09  Score=104.55  Aligned_cols=148  Identities=15%  Similarity=0.109  Sum_probs=92.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhc-ccccceeecCCCCHHHHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALG-VDVENLIVCQPDNGEMALEIAD---  214 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lG-v~~~~l~i~~~~~~ee~l~~i~---  214 (440)
                      -++ |++++|.|||||||||| +++++++. +..|.+++++.........+.++ +.+++..+  ..++.+.+....   
T Consensus        27 ~i~-Ge~~~i~G~NGsGKSTL-lk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~  101 (263)
T 2pjz_A           27 EVN-GEKVIILGPNGSGKTTL-LRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK  101 (263)
T ss_dssp             EEC-SSEEEEECCTTSSHHHH-HHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred             EEC-CEEEEEECCCCCCHHHH-HHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence            478 99999999999999999 99999999 99999999875432111134677 77776554  455555443321   


Q ss_pred             --------HHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------HHHHHHHHHHHHh
Q 013567          215 --------RMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-----------------SQALRKMSGNASK  268 (440)
Q Consensus       215 --------~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-----------------~~~l~~L~~lak~  268 (440)
                              ++++..     -++ ...... ..++++  |++|+...+|++                 ......+..++++
T Consensus       102 ~~~~~~~~~~l~~~-----gl~~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~  173 (263)
T 2pjz_A          102 GLDRDLFLEMLKAL-----KLGEEILRRK-LYKLSA--GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE  173 (263)
T ss_dssp             CCCHHHHHHHHHHT-----TCCGGGGGSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHc-----CCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence                    122211     122 222222 245555  888888888887                 2233334444444


Q ss_pred             cCCEEEEEeccccccccccC-Cceeeccccee
Q 013567          269 AGCTLIFLNQIRYKIGVYYG-NPEVTSGGIAL  299 (440)
Q Consensus       269 ~~~tVI~inhl~~~ig~~~~-~~~~~~gG~~l  299 (440)
                      ...|||+++|..+.+...++ .......|+..
T Consensus       174 ~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~  205 (263)
T 2pjz_A          174 YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ  205 (263)
T ss_dssp             SCSEEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred             hcCcEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence            33399999999876655554 44444455443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.00  E-value=3.7e-10  Score=115.00  Aligned_cols=150  Identities=21%  Similarity=0.211  Sum_probs=94.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHH----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALE----  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~----  211 (440)
                      -+++|+++.|.|||||||||| +++++++.. ..|.+++++......   .+.+.+|+.+++..+++ .++.+.+.    
T Consensus        43 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~  119 (390)
T 3gd7_A           43 SISPGQRVGLLGRTGSGKSTL-LSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAA  119 (390)
T ss_dssp             EECTTCEEEEEESTTSSHHHH-HHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCC
T ss_pred             EEcCCCEEEEECCCCChHHHH-HHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccc
Confidence            478999999999999999999 999999987 789999998865432   24577899888776553 34433321    


Q ss_pred             ----HHHHHHhcCCcceEEEecccccCCc----------hhhcccchhhhHHHHHHHH--------------------HH
Q 013567          212 ----IADRMCRSGAIDLICVDSVSALTPR----------AEIEGEIGMQQIGLQARLM--------------------SQ  257 (440)
Q Consensus       212 ----~i~~l~~~~~~~lvVIDsl~~l~~~----------~el~~~~g~~q~~~~ar~l--------------------~~  257 (440)
                          .+.+++..-+     ++.+....|.          ..+++  |++|+...+|++                    ..
T Consensus       120 ~~~~~v~~~l~~~~-----L~~~~~~~p~~l~~~i~~~g~~LSG--GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~  192 (390)
T 3gd7_A          120 HSDQEIWKVADEVG-----LRSVIEQFPGKLDFVLVDGGCVLSH--GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ  192 (390)
T ss_dssp             SCHHHHHHHHHHTT-----CHHHHTTSTTGGGCEECTTTTTSCH--HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHH
T ss_pred             cCHHHHHHHHHHhC-----CHHHHhhcccccccccccccccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence                1222222111     2222222221          11555  888888888887                    22


Q ss_pred             HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567          258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      .++.+.... ..++|||+++|..+.+. +++....+..|+...
T Consensus       193 ~l~~~l~~~-~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~  233 (390)
T 3gd7_A          193 IIRRTLKQA-FADCTVILCEARIEAML-ECDQFLVIEENKVRQ  233 (390)
T ss_dssp             HHHHHHHTT-TTTSCEEEECSSSGGGT-TCSEEEEEETTEEEE
T ss_pred             HHHHHHHHH-hCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEE
Confidence            333322222 24799999999976443 344444555665543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.00  E-value=1.4e-10  Score=110.59  Aligned_cols=61  Identities=13%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i  200 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++.....   ..+.+.+++.+++..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l   87 (243)
T 1mv5_A           24 EAQPNSIIAFAGPSGGGKSTI-FSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI   87 (243)
T ss_dssp             EECTTEEEEEECCTTSSHHHH-HHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc
Confidence            478999999999999999999 999999999999999998865322   1245567877765443

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.91  E-value=8e-09  Score=97.35  Aligned_cols=123  Identities=15%  Similarity=0.143  Sum_probs=84.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      .+|.++.++|++|+||||++++++.++...+..++++..+....  ...+.++|+....+.+.   ..+++++.+.....
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~---~~~~i~~~i~~~~~   86 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVE---SAPEILNYIMSNSF   86 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEES---STHHHHHHHHSTTS
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccC---CHHHHHHHHHHHhh
Confidence            46889999999999999999999999998888999996543211  12456677666555442   33556666555444


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      ...+++|+||+++.+.. .                 +-+.+   ..++. .+++||++.+..+-.+..|+
T Consensus        87 ~~~~dvViIDEaQ~l~~-~-----------------~ve~l---~~L~~-~gi~Vil~Gl~~df~~~~F~  134 (223)
T 2b8t_A           87 NDETKVIGIDEVQFFDD-R-----------------ICEVA---NILAE-NGFVVIISGLDKNFKGEPFG  134 (223)
T ss_dssp             CTTCCEEEECSGGGSCT-H-----------------HHHHH---HHHHH-TTCEEEEECCSBCTTSSBCT
T ss_pred             CCCCCEEEEecCccCcH-H-----------------HHHHH---HHHHh-CCCeEEEEeccccccCCcCC
Confidence            56789999999987542 0                 11222   22333 48999999998875554443

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.89  E-value=3.7e-09  Score=113.08  Aligned_cols=63  Identities=21%  Similarity=0.376  Sum_probs=52.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~  202 (440)
                      -+++|++++|+|||||||||| ++++.+...+..|.+++++.+..+.   .+.+.+++.+++..+++
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTL-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~  430 (582)
T 3b60_A          365 KIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN  430 (582)
T ss_dssp             EECTTCEEEEEECTTSSHHHH-HHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC
Confidence            478999999999999999999 9999999999999999998764332   24567888887765543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.88  E-value=4.7e-09  Score=112.25  Aligned_cols=62  Identities=18%  Similarity=0.407  Sum_probs=51.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|+|||||||||| ++++.+...+..|.+++++.+..+   ..+.+.+|+.+++..++
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~  429 (582)
T 3b5x_A          365 SIPQGKTVALVGRSGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF  429 (582)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccc
Confidence            479999999999999999999 999999999999999999875432   12456788888766554

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.86  E-value=3e-09  Score=100.48  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++
T Consensus        30 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g   69 (229)
T 2pze_A           30 KIERGQLLAVAGSTGAGKTSL-LMMIMGELEPSEGKIKHSG   69 (229)
T ss_dssp             EEETTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEECS
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCcCCccEEEECC
Confidence            478999999999999999999 9999999999999998876

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.82  E-value=2.8e-09  Score=114.19  Aligned_cols=62  Identities=18%  Similarity=0.274  Sum_probs=52.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|+||+||||||| ++++.+...+..|.+++++.+..+.   .+.+++++.+++..++
T Consensus       365 ~i~~Ge~~~ivG~sGsGKSTl-l~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  429 (587)
T 3qf4_A          365 SVKPGSLVAVLGETGSGKSTL-MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF  429 (587)
T ss_dssp             EECTTCEEEEECSSSSSHHHH-HHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc
Confidence            478999999999999999999 9999999999999999998865432   2566788888776554

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.82  E-value=4e-09  Score=113.13  Aligned_cols=68  Identities=22%  Similarity=0.377  Sum_probs=54.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      -+++|++++|+||+||||||| ++++.+...+..|.+++++.+..+.   .+.+.+++.+++..+++ .++.+
T Consensus       377 ~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e  447 (598)
T 3qf4_B          377 HIKPGQKVALVGPTGSGKTTI-VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKE  447 (598)
T ss_dssp             ECCTTCEEEEECCTTSSTTHH-HHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHH
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHH
Confidence            389999999999999999999 9999999999999999998754322   25667888888766553 24433

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.81  E-value=4.1e-09  Score=112.65  Aligned_cols=63  Identities=24%  Similarity=0.404  Sum_probs=52.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~  202 (440)
                      -+++|++++|+|||||||||| ++++.+...+..|.+++++.+..+.   .+.+.+|+.+++..+++
T Consensus       363 ~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~  428 (578)
T 4a82_A          363 SIEKGETVAFVGMSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS  428 (578)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS
T ss_pred             EECCCCEEEEECCCCChHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc
Confidence            479999999999999999999 9999999999999999998754322   25667888887765543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.81  E-value=9.4e-09  Score=97.60  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g   66 (237)
T 2cbz_A           27 SIPEGALVAVVGQVGCGKSSL-LSALLAEMDKVEGHVAIKG   66 (237)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHTTCSEEEEEEEEECS
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECC
Confidence            478999999999999999999 9999999998888888876

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.79  E-value=6.2e-09  Score=110.26  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +++|++++|+|||||||||| ++++.++.++..|.++++.
T Consensus       291 i~~Gei~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~~  329 (538)
T 3ozx_A          291 AKEGEIIGILGPNGIGKTTF-ARILVGEITADEGSVTPEK  329 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHH-HHHHTTSSCCSBCCEESSC
T ss_pred             ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECC
Confidence            57999999999999999999 9999999988888776543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.78  E-value=2.5e-09  Score=114.88  Aligned_cols=132  Identities=16%  Similarity=0.144  Sum_probs=76.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-HHHHh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA-DRMCR  218 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-~~l~~  218 (440)
                      +++|++++|.|||||||||| ++++.++.++..|.+++.          ..+++.+++.......++.+.+... .....
T Consensus       379 v~~Gei~~i~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~  447 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEGKVEWD----------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLN  447 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHH-HHHHHTSSCCSBSCCCCC----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEEe----------eEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence            47899999999999999999 999999988877666541          2355555554333333444433221 00000


Q ss_pred             -----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCE
Q 013567          219 -----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAGCT  272 (440)
Q Consensus       219 -----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~t  272 (440)
                           ..-.+.+-++...... ..++++  |++|+...++++                     ..++..|..++++.+.|
T Consensus       448 ~~~~~~~~l~~~~l~~~~~~~-~~~LSG--Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  524 (607)
T 3bk7_A          448 SNFYKTELLKPLGIIDLYDRN-VEDLSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT  524 (607)
T ss_dssp             CHHHHHHTHHHHTCTTTTTSB-GGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence                 0001111122222111 234444  666666666665                     23444455555677999


Q ss_pred             EEEEecccccccc
Q 013567          273 LIFLNQIRYKIGV  285 (440)
Q Consensus       273 VI~inhl~~~ig~  285 (440)
                      ||+++|..+.+..
T Consensus       525 vi~vsHd~~~~~~  537 (607)
T 3bk7_A          525 ALVVEHDVLMIDY  537 (607)
T ss_dssp             EEEECSCHHHHHH
T ss_pred             EEEEeCCHHHHHH
Confidence            9999999876543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.77  E-value=3.3e-09  Score=112.46  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-HHHHh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA-DRMCR  218 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-~~l~~  218 (440)
                      +++|++++|+|||||||||| ++++.++.++..|.+++.          ..+|+.+++.......++.+.+... .....
T Consensus       309 i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl~~p~~G~i~~~----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~  377 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEGKIEWD----------LTVAYKPQYIKADYEGTVYELLSKIDASKLN  377 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHH-HHHHHTSSCCSBCCCCCC----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEEC----------ceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence            46899999999999999999 999999988776665531          2345555544332233444433221 00000


Q ss_pred             -----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCE
Q 013567          219 -----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAGCT  272 (440)
Q Consensus       219 -----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~t  272 (440)
                           ..-.+.+-+.....-. ..++++  |++|+...++++                     ..++..|..++++.+.|
T Consensus       378 ~~~~~~~~l~~~~l~~~~~~~-~~~LSG--Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t  454 (538)
T 1yqt_A          378 SNFYKTELLKPLGIIDLYDRE-VNELSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT  454 (538)
T ss_dssp             CHHHHHHTTTTTTCGGGTTSB-GGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence                 0001111111111111 234444  666666666665                     23444455555677999


Q ss_pred             EEEEecccccccccc
Q 013567          273 LIFLNQIRYKIGVYY  287 (440)
Q Consensus       273 VI~inhl~~~ig~~~  287 (440)
                      ||+++|..+.+..++
T Consensus       455 vi~vsHd~~~~~~~~  469 (538)
T 1yqt_A          455 ALVVEHDVLMIDYVS  469 (538)
T ss_dssp             EEEECSCHHHHHHHC
T ss_pred             EEEEeCCHHHHHHhC
Confidence            999999987665433

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.72  E-value=8.6e-09  Score=100.88  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++
T Consensus        60 ~i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g   99 (290)
T 2bbs_A           60 KIERGQLLAVAGSTGAGKTSL-LMMIMGELEPSEGKIKHSG   99 (290)
T ss_dssp             EECTTCEEEEEESTTSSHHHH-HHHHTTSSCEEEEEEECCS
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECC
Confidence            478999999999999999999 9999999988888888875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.65  E-value=9.2e-08  Score=94.17  Aligned_cols=133  Identities=19%  Similarity=0.227  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhh--hhcccccceeecCCCCHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSK--ALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~--~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      +|+++.|+||+||||||+ +..+++..++.++.+++.+.+.....       +.+  .+++.+++....+..+..+.+..
T Consensus       101 ~g~vi~lvG~nGsGKTTl-l~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTT-IAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             SSSEEEEECSTTSSHHHH-HHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHH-HHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            689999999999999999 88888888887777777777654321       222  23443333211111112222222


Q ss_pred             HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH----------------HHHHHHHHHHHHhcCCEEEEE
Q 013567          213 ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------------SQALRKMSGNASKAGCTLIFL  276 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------------~~~l~~L~~lak~~~~tVI~i  276 (440)
                      ..    ..+.+.+++|..........+-.+. .+++...+|++                ...+..+..+.++.++|+|++
T Consensus       180 ~~----~~~~d~~llDt~G~~~~~~~~~~eL-s~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iiv  254 (304)
T 1rj9_A          180 MK----ARGYDLLFVDTAGRLHTKHNLMEEL-KKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIV  254 (304)
T ss_dssp             HH----HHTCSEEEECCCCCCTTCHHHHHHH-HHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEE
T ss_pred             HH----hCCCCEEEecCCCCCCchHHHHHHH-HHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence            11    1246778888765433211111111 12333333332                234555666666779999999


Q ss_pred             eccc
Q 013567          277 NQIR  280 (440)
Q Consensus       277 nhl~  280 (440)
                      ||+.
T Consensus       255 Th~d  258 (304)
T 1rj9_A          255 TKLD  258 (304)
T ss_dssp             ECTT
T ss_pred             ECCc
Confidence            9984

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.63  E-value=3.4e-08  Score=114.57  Aligned_cols=62  Identities=16%  Similarity=0.307  Sum_probs=51.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|+||+||||||| ++++.++..+..|.+++++.+....   .+.+.+++.+++..++
T Consensus      1055 ~i~~Ge~v~ivG~sGsGKSTl-~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 1119 (1284)
T 3g5u_A         1055 EVKKGQTLALVGSSGCGKSTV-VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119 (1284)
T ss_dssp             EECSSSEEEEECSSSTTHHHH-HHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc
Confidence            378999999999999999999 9999999999999999999865432   2456688887765443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.61  E-value=2.1e-08  Score=107.63  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=31.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN  173 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~  173 (440)
                      |-+++|++++|+|||||||||| ++++.++.++..|
T Consensus       373 G~~~~GEiv~iiG~NGsGKSTL-lk~l~Gl~~p~~G  407 (608)
T 3j16_B          373 GEFSDSEILVMMGENGTGKTTL-IKLLAGALKPDEG  407 (608)
T ss_dssp             EECCTTCEEEEESCTTSSHHHH-HHHHHTSSCCSBC
T ss_pred             CccccceEEEEECCCCCcHHHH-HHHHhcCCCCCCC
Confidence            5578889999999999999999 9999999887654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.57  E-value=4.9e-08  Score=113.20  Aligned_cols=157  Identities=14%  Similarity=0.174  Sum_probs=93.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALEI---  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~~---  212 (440)
                      -+++|++++|+||+||||||| ++++.+...+..|.+++++.+..+.   .+.+.+|+.+++..++.. ++.+.+..   
T Consensus       412 ~i~~G~~~~ivG~sGsGKSTl-~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~  489 (1284)
T 3g5u_A          412 KVKSGQTVALVGNSGCGKSTT-VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE  489 (1284)
T ss_dssp             EECTTCEEEEECCSSSSHHHH-HHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC
Confidence            478999999999999999999 9999999999999999998754322   255678988887766543 44332211   


Q ss_pred             ------HHHHHhcCCcceEEEecc----cccCC--chhhcccchhhhHHHHHHHH--------------------HHHHH
Q 013567          213 ------ADRMCRSGAIDLICVDSV----SALTP--RAEIEGEIGMQQIGLQARLM--------------------SQALR  260 (440)
Q Consensus       213 ------i~~l~~~~~~~lvVIDsl----~~l~~--~~el~~~~g~~q~~~~ar~l--------------------~~~l~  260 (440)
                            +.+.++.....-. ++.+    .....  ...+++  |++|+...||++                    ...+.
T Consensus       490 ~~~~~~~~~~~~~~~~~~~-i~~l~~g~~t~~~~~g~~LSg--Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~  566 (1284)
T 3g5u_A          490 DVTMDEIEKAVKEANAYDF-IMKLPHQFDTLVGERGAQLSG--GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ  566 (1284)
T ss_dssp             SCCHHHHHHHHHHTTCHHH-HHHSTTGGGCCCSSSSCSSCH--HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCcHHH-HHhccccccccccCCCCccCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence                  1111111111000 0000    00110  123343  777777777776                    12222


Q ss_pred             HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      ...... ..++|+|+|+|....+.. ++.......|+.....
T Consensus       567 ~~l~~~-~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g  606 (1284)
T 3g5u_A          567 AALDKA-REGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQG  606 (1284)
T ss_dssp             HHHHHH-HTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEE
T ss_pred             HHHHHH-cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence            222222 248999999998776643 4444455666665443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.50  E-value=1.3e-07  Score=109.99  Aligned_cols=61  Identities=13%  Similarity=0.305  Sum_probs=52.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i  200 (440)
                      -|++|+.++|+||+||||||| ++++.++..+..|.++||+.+..+-   .+++++++.+|+..+
T Consensus      1101 ~I~~Ge~vaIVG~SGsGKSTL-~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A         1101 SVEPGQTLALVGPSGCGKSTV-VALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp             EECTTCEEEEECSTTSSTTSH-HHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC
T ss_pred             EECCCCEEEEECCCCChHHHH-HHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe
Confidence            489999999999999999999 9999999999999999999876543   367788888876543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.50  E-value=5.8e-08  Score=102.87  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcE
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA  174 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~v  174 (440)
                      -+++|++++|+|||||||||| ++++++...++.|.
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTL-lk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTA-VKILAGQLIPNLCG   77 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHH-HHHHHTSSCCCTTT
T ss_pred             cCCCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCc
Confidence            478999999999999999999 99999998876654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.47  E-value=6.4e-08  Score=103.92  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcE
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA  174 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~v  174 (440)
                      -+++|++++|.|||||||||| ++++++...+..|.
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTL-lkiL~Gll~p~~G~  147 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTA-VKILAGQLIPNLCE  147 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHH-HHHHTTSSCCCTTT
T ss_pred             CCCCCCEEEEECCCCChHHHH-HHHHhCCCCCCCCc
Confidence            478999999999999999999 99999998876655

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.47  E-value=2.7e-07  Score=90.67  Aligned_cols=44  Identities=32%  Similarity=0.426  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD  184 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~  184 (440)
                      +++|+++.|+||||+||||+ +..+++..++.++.+++.+.+...
T Consensus        97 ~~~g~vi~lvG~nGsGKTTl-l~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTS-LGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHH-HHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             cCCCcEEEEEcCCCCCHHHH-HHHHHHHHHHcCCeEEEEeecccc
Confidence            56899999999999999999 788888887777777777776654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.44  E-value=5.2e-07  Score=90.79  Aligned_cols=44  Identities=32%  Similarity=0.426  Sum_probs=36.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD  184 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~  184 (440)
                      +++|+++.|+|||||||||+ +..+++..++.++.+++.+.+...
T Consensus       154 ~~~g~vi~lvG~nGsGKTTl-l~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTS-LGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHH-HHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             cCCCeEEEEEcCCCChHHHH-HHHHHhhccccCCEEEEecccccc
Confidence            56899999999999999999 778888887777777777776654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.43  E-value=6.4e-07  Score=89.08  Aligned_cols=130  Identities=19%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccc--cceeecCCCCHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDV--ENLIVCQPDNGEMALE  211 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~--~~l~i~~~~~~ee~l~  211 (440)
                      ++|+++.|+||||+||||+ +..+++..++.++.+++.+.+.....       +++++|+..  +.....+..++.+.+.
T Consensus       127 ~~g~vi~lvG~nGaGKTTl-l~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~  205 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTT-IAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ  205 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHH-HHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence            5799999999999999999 77777887777777777666554321       345566432  2111111111222222


Q ss_pred             HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------HHHHHHHHHHHHhcCCEEEEEe
Q 013567          212 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------SQALRKMSGNASKAGCTLIFLN  277 (440)
Q Consensus       212 ~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------~~~l~~L~~lak~~~~tVI~in  277 (440)
                      ...    ....+++++|..........+-.     .....++.+              .+.+..+..+.++.++++|++|
T Consensus       206 ~~~----~~~~d~vliDtaG~~~~~~~l~~-----eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilT  276 (328)
T 3e70_C          206 HAK----ARGIDVVLIDTAGRSETNRNLMD-----EMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILT  276 (328)
T ss_dssp             HHH----HHTCSEEEEEECCSCCTTTCHHH-----HHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEE
T ss_pred             HHH----hccchhhHHhhccchhHHHHHHH-----HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            211    23567888887655431111110     111112221              2344555566667899999999


Q ss_pred             ccc
Q 013567          278 QIR  280 (440)
Q Consensus       278 hl~  280 (440)
                      |+-
T Consensus       277 KlD  279 (328)
T 3e70_C          277 KLD  279 (328)
T ss_dssp             CGG
T ss_pred             CcC
Confidence            974

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.41  E-value=9.2e-07  Score=92.18  Aligned_cols=90  Identities=16%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hh--hhhhcccccceeecCCCCHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SY--SKALGVDVENLIVCQPDNGEMAL  210 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~--a~~lGv~~~~l~i~~~~~~ee~l  210 (440)
                      +++|+++.|+|+|||||||| +..+++..++.++.+++.+.+....       .+  .+.+++.+++....   ....+.
T Consensus       290 i~~GeVI~LVGpNGSGKTTL-l~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~---p~~tV~  365 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTT-IGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD---SASVIF  365 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC---HHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHH-HHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC---HHHHHH
Confidence            57899999999999999999 7788888877777777765555442       12  22344444332111   111222


Q ss_pred             HHHHHHHhcCCcceEEEecccccC
Q 013567          211 EIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       211 ~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      +.+... ...+.++++||....+.
T Consensus       366 e~l~~a-~~~~~DvVLIDTaGrl~  388 (503)
T 2yhs_A          366 DAIQAA-KARNIDVLIADTAGRLQ  388 (503)
T ss_dssp             HHHHHH-HHTTCSEEEECCCCSCC
T ss_pred             HHHHHH-HhcCCCEEEEeCCCccc
Confidence            222222 22467899999887664

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.41  E-value=2.9e-07  Score=107.07  Aligned_cols=61  Identities=16%  Similarity=0.248  Sum_probs=51.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV  200 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i  200 (440)
                      -+++|+.++|+||+||||||| ++++.+...+..|.+++|+.+..+.   .+.+++++.+++.++
T Consensus       440 ~i~~G~~vaivG~sGsGKSTl-l~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L  503 (1321)
T 4f4c_A          440 RVNAGQTVALVGSSGCGKSTI-ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL  503 (1321)
T ss_dssp             EECTTCEEEEEECSSSCHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred             eecCCcEEEEEecCCCcHHHH-HHHhccccccccCcccCCCccchhccHHHHhhcccccCCccee
Confidence            489999999999999999999 9999999999999999998765443   256678888766544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.40  E-value=4e-08  Score=88.16  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALH  162 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~  162 (440)
                      +++|++++|+|||||||||| ++
T Consensus         6 i~~gei~~l~G~nGsGKSTl-~~   27 (171)
T 4gp7_A            6 IPELSLVVLIGSSGSGKSTF-AK   27 (171)
T ss_dssp             EESSEEEEEECCTTSCHHHH-HH
T ss_pred             CCCCEEEEEECCCCCCHHHH-HH
Confidence            57899999999999999999 55

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.38  E-value=5.9e-07  Score=80.57  Aligned_cols=110  Identities=12%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .+++|+.+.|+||||+|||||+..++..+. ..+..++|++..+..... ...+.-         . .....+   ..+ 
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~---------~-~~~~~~---~~~-   98 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL-KHLMDE---------G-KDTKFL---KTV-   98 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH-HHHHHH---------T-CCSHHH---HHH-
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-HHHhcC---------c-hHHHHH---HHh-
Confidence            345689999999999999999554444443 345567776643221111 010000         0 001122   222 


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                        ..++++++|.+..... ..           .    ....+..+.....+.+.++|+++|...
T Consensus        99 --~~~~llilDE~~~~~~-~~-----------~----~~~~l~~ll~~~~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A           99 --LNSPVLVLDDLGSERL-SD-----------W----QRELISYIITYRYNNLKSTIITTNYSL  144 (180)
T ss_dssp             --HTCSEEEEETCSSSCC-CH-----------H----HHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred             --cCCCEEEEeCCCCCcC-CH-----------H----HHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence              2578999999874321 00           0    122334444444557899999998753

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.38  E-value=2.2e-06  Score=75.26  Aligned_cols=88  Identities=23%  Similarity=0.297  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      +|+.+.|+||+|+||||| ++++.+...+ +..++|++.......                             .++  .
T Consensus        35 ~g~~~~l~G~~G~GKTtL-~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------------~~~--~   82 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHL-LQAWVAQALEAGKNAAYIDAASMPLT-----------------------------DAA--F   82 (149)
T ss_dssp             CCSEEEEESSSTTTTCHH-HHHHHHHHHTTTCCEEEEETTTSCCC-----------------------------GGG--G
T ss_pred             CCCEEEEECCCCCCHHHH-HHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------------HHH--h
Confidence            899999999999999999 6666666544 334899987654322                             011  2


Q ss_pred             CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecc
Q 013567          221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCT-LIFLNQI  279 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~t-VI~inhl  279 (440)
                      .+++++||.+..+.+ .             .    .+.+..+.+...+.+.+ +|+++|.
T Consensus        83 ~~~lLilDE~~~~~~-~-------------~----~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           83 EAEYLAVDQVEKLGN-E-------------E----QALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GCSEEEEESTTCCCS-H-------------H----HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCEEEEeCccccCh-H-------------H----HHHHHHHHHHHHHcCCcEEEEECCC
Confidence            478999999987543 0             0    12233344444556777 7778775

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.37  E-value=3.5e-07  Score=99.24  Aligned_cols=22  Identities=41%  Similarity=0.800  Sum_probs=20.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLA  160 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLa  160 (440)
                      -+++|++++|+||||||||||+
T Consensus        40 ~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           40 EIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEETTSEEEEECSTTSSHHHHH
T ss_pred             EECCCCEEEEECCCCCCHHHHh
Confidence            4789999999999999999993

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.36  E-value=4.1e-07  Score=96.29  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM  175 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv  175 (440)
                      .++|++++|+|||||||||| ++++++..+++.|.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTL-lkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTV-LKILAGEIIPNFGDP   56 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHH-HHHHTTSSCCCTTCT
T ss_pred             CCCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCCcc
Confidence            56899999999999999999 999999998877655

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.34  E-value=3.8e-07  Score=97.86  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM  175 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv  175 (440)
                      +++|++++|.||||+||||| +++++++.++..|.+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTL-LkiL~Gll~P~~G~i  134 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTA-LKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHH-HHHHHTSSCCCTTTT
T ss_pred             CCCCCEEEEECCCCChHHHH-HHHHhcCCCCCCceE
Confidence            67999999999999999999 999999998877654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.30  E-value=1.5e-06  Score=79.00  Aligned_cols=110  Identities=16%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      +|.++.|+|++|+||||++++++..+...+.+++++.......   .....+.|.....+.+.   +.+++++.+.    
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~---~~~~~~~~~~----   74 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIE---RPEEMRKYIE----   74 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEES---SGGGGGGGCC----
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEEC---CHHHHHHHhc----
Confidence            4889999999999999999999999988888888875442111   11223344433333221   2222222111    


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                       .+.++|+||.++.+.+ .                 +...+   ..++.+ ++.||++....+
T Consensus        75 -~~~dvviIDE~Q~~~~-~-----------------~~~~l---~~l~~~-~~~Vi~~Gl~~~  114 (184)
T 2orw_A           75 -EDTRGVFIDEVQFFNP-S-----------------LFEVV---KDLLDR-GIDVFCAGLDLT  114 (184)
T ss_dssp             -TTEEEEEECCGGGSCT-T-----------------HHHHH---HHHHHT-TCEEEEEEESBC
T ss_pred             -CCCCEEEEECcccCCH-H-----------------HHHHH---HHHHHC-CCCEEEEeeccc
Confidence             3578999999987642 0                 11223   333334 899998887654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.28  E-value=5e-06  Score=79.86  Aligned_cols=47  Identities=15%  Similarity=0.162  Sum_probs=39.2

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCC
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAE  180 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E  180 (440)
                      +.|+.+.   +++|++++|+||+||||||| ++++.+...+. .+.++++..
T Consensus        15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTl-l~~l~g~~~~~~~G~I~~~g~   62 (261)
T 2eyu_A           15 DKVLELC---HRKMGLILVTGPTGSGKSTT-IASMIDYINQTKSYHIITIED   62 (261)
T ss_dssp             THHHHGG---GCSSEEEEEECSTTCSHHHH-HHHHHHHHHHHCCCEEEEEES
T ss_pred             HHHHHHh---hCCCCEEEEECCCCccHHHH-HHHHHHhCCCCCCCEEEEcCC
Confidence            4666654   89999999999999999999 89999988775 677777654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.22  E-value=2.5e-06  Score=85.75  Aligned_cols=114  Identities=16%  Similarity=0.069  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      ..+|.+++|+||+||||||| ++++.+...+. ++.+ +..|+..+.......++..+.-.-....+..+   .+...+.
T Consensus       120 ~~~~g~i~I~GptGSGKTTl-L~~l~g~~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---~La~aL~  194 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTT-LAAMLDYLNNTKYHHI-LTIEDPIEFVHESKKCLVNQREVHRDTLGFSE---ALRSALR  194 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHH-HHHHHHHHHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HHHHHTT
T ss_pred             hCCCCEEEEECCCCCCHHHH-HHHHHhcccCCCCcEE-EEccCcHHhhhhccccceeeeeeccccCCHHH---HHHHHhh
Confidence            35777999999999999999 88888888764 3444 33343332221111111111111111123333   2223232


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                       .+++++++|.+...    +                ..+.+   .. +.+.|.+||+++|..+..
T Consensus       195 -~~PdvillDEp~d~----e----------------~~~~~---~~-~~~~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          195 -EDPDIILVGEMRDL----E----------------TIRLA---LT-AAETGHLVFGTLHTTSAA  234 (356)
T ss_dssp             -SCCSEEEESCCCSH----H----------------HHHHH---HH-HHHTTCEEEEEESCSSHH
T ss_pred             -hCcCEEecCCCCCH----H----------------HHHHH---HH-HHhcCCEEEEEEccChHH
Confidence             57999999987520    0                11111   12 235699999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.20  E-value=1.9e-07  Score=86.89  Aligned_cols=55  Identities=25%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc-CCCCCChhhhhhhcccccc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD-AEHAFDPSYSKALGVDVEN  197 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id-~E~~~~~~~a~~lGv~~~~  197 (440)
                      +++|++++|.|||||||||| ++++.++ .+..|.+... .... ...+.+.+|+.+++
T Consensus        19 i~~Ge~~~liG~nGsGKSTL-l~~l~Gl-~p~~G~I~~~~~~~~-~~~~~~~ig~v~q~   74 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYL-AMAKAVQ-ALQSKQVSRIILTRP-AVEAGEKLGFLPGT   74 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHH-HHHHHHH-HHHTTSCSEEEEEEC-SCCTTCCCCSSCC-
T ss_pred             ccCCCEEEEECCCCCCHHHH-HHHHhcC-CCcCCeeeeEEecCC-chhhhcceEEecCC
Confidence            57999999999999999999 9999999 8766555321 1111 11234456766654

>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22

Probab=98.17  E-value=2.1e-05  Score=69.78  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=87.9

Q ss_pred             cccccCcHHHHHHh-cCCCCCCCEEEEEc-CCCCcHHHHHHHHHHHHhh--cCCcEEEEcCCCCCChhhhhhhcccccce
Q 013567          123 ETFPSGCLTLDLAL-GGGLPKGRIVEIFG-PESSGKTTLALHAIAEVQK--LGGNAMLVDAEHAFDPSYSKALGVDVENL  198 (440)
Q Consensus       123 ~~i~TGi~~LD~~L-gGGi~~G~ii~I~G-~~GsGKTTLaL~li~~~~~--~~~~vv~id~E~~~~~~~a~~lGv~~~~l  198 (440)
                      ..+|.|.+.+|.-+ +||++.|-+++|.. .+|.|-..|.+-++..+..  .++.++||..............|++++++
T Consensus        23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rl  102 (161)
T 1oft_A           23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERI  102 (161)
T ss_dssp             --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGE
T ss_pred             ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHE
Confidence            36799999999988 68999999999985 5788877776777776654  67889999988777777788999999999


Q ss_pred             eecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Q 013567          199 IVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL  276 (440)
Q Consensus       199 ~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~i  276 (440)
                      .++++.+..+.++.+++.++.+.+..|+.. +..+.                     ...+|+|.-.++..+++.+++
T Consensus       103 l~v~~~~~~daLwa~EqALrsG~~~aVl~W-l~~l~---------------------~~~~RRLqlAAe~g~~~~fll  158 (161)
T 1oft_A          103 LLLQAKDNAAALALSCEALRLGRSHTVVSW-LEPLS---------------------RAARKQLSRAAQLGQAQSLNI  158 (161)
T ss_dssp             EEECCSSTTHHHHHHHHHHHTTCEEEEEEC-CSSCC---------------------HHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEECCChHHHHHHHHHHHhcCCccEEEEC-CCcCC---------------------hHHHHHHHHHHHhCCCeEEEe
Confidence            999999999999999999999999888865 22211                     123566666666666766654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.16  E-value=6.8e-07  Score=92.27  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=48.9

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .+.||...||.++  =+.+|+++.|+||||+||||| ++++++...++.+++.+.++
T Consensus       140 ~~~tg~~vld~vl--~i~~Gq~~~IvG~sGsGKSTL-l~~Iag~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          140 VLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVL-LGMMARYTRADVIVVGLIGE  193 (438)
T ss_dssp             BCCCSCHHHHHHS--CCBTTCEEEEEECTTSSHHHH-HHHHHHHSCCSEEEEEEESC
T ss_pred             ecCCCceEEeeeE--EecCCCEEEEECCCCCCHHHH-HHHHhcccCCCeEEEEEece
Confidence            4567899999985  688999999999999999999 99999999998899999887

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=98.16  E-value=2.1e-06  Score=78.05  Aligned_cols=124  Identities=8%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccc----cccee-ecCCCCHHHHHHHHHHHHhc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD----VENLI-VCQPDNGEMALEIADRMCRS  219 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~----~~~l~-i~~~~~~ee~l~~i~~l~~~  219 (440)
                      ++.|+|++|||||+||.+++..    +.+++|+++...++..+.+++.-.    +.... +-.+....+.+.   ..  .
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~---~~--~   71 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLIT---AD--L   71 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSC---TT--S
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHH---hh--c
Confidence            4789999999999999988744    568999999877666543332111    11222 222233332221   11  1


Q ss_pred             CCcceEEEecccccCCchhhcc-----cchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013567          220 GAIDLICVDSVSALTPRAEIEG-----EIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ  278 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~-----~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inh  278 (440)
                      ...+.|+||+++.+.. ..+..     +............+...+..|...+++...++|+++.
T Consensus        72 ~~~~~VLvDclt~wl~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsN  134 (180)
T 1c9k_A           72 APDDAILLECITTMVT-NLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN  134 (180)
T ss_dssp             CTTCEEEEECHHHHHH-HHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             ccCCeEEEcCHHHHHH-HHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEc
Confidence            1236899999999874 33321     1000000000122444555666666666666666654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.14  E-value=4.3e-06  Score=93.70  Aligned_cols=39  Identities=15%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +++|++++|.|||||||||| ++++.+...+..|.++++.
T Consensus       696 I~~GeivaIiGpNGSGKSTL-LklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          696 CSLSSRIAVIGPNGAGKSTL-INVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             EETTCEEEECSCCCHHHHHH-HHHHTTSSCCSEEEEEECT
T ss_pred             EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEEcC
Confidence            78999999999999999999 9999999999999999864

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=98.13  E-value=1.5e-05  Score=72.96  Aligned_cols=117  Identities=15%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---ChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .+|.++.++|+.|+||||.+++++.++...+.+++++...-..   ......++|+......+...   +++++.+.   
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~~---   79 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYFE---   79 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHCC---
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHHh---
Confidence            4688999999999999999999999998888899888522111   11234455654443333322   23333221   


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY  287 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~  287 (440)
                        ...++|+||..+.+.+ .                 +   +..|..++. .+++||+.....+--+..|
T Consensus        80 --~~~dvViIDEaqfl~~-~-----------------~---v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F  125 (191)
T 1xx6_A           80 --EDTEVIAIDEVQFFDD-E-----------------I---VEIVNKIAE-SGRRVICAGLDMDFRGKPF  125 (191)
T ss_dssp             --TTCSEEEECSGGGSCT-H-----------------H---HHHHHHHHH-TTCEEEEEECSBCTTSCBC
T ss_pred             --ccCCEEEEECCCCCCH-H-----------------H---HHHHHHHHh-CCCEEEEEecccccccCcC
Confidence              2479999999877542 0                 1   122233333 4899999977665333333

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.12  E-value=5.9e-06  Score=92.62  Aligned_cols=27  Identities=44%  Similarity=0.688  Sum_probs=24.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      -+++|++++|+|||||||||| ++++.+
T Consensus       457 ~I~~Ge~v~LiGpNGsGKSTL-Lk~Lag  483 (986)
T 2iw3_A          457 RLKRARRYGICGPNGCGKSTL-MRAIAN  483 (986)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhC
Confidence            478999999999999999999 888874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.07  E-value=3.4e-06  Score=83.80  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=53.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      +++|++++|+||+||||||| ++++.+...+..+.+.+++....... ..+       .+.+.......+...+...+  
T Consensus       168 i~~g~~v~i~G~~GsGKTTl-l~~l~g~~~~~~g~i~i~~~~e~~~~~~~~-------~i~~~~ggg~~~r~~la~aL--  237 (330)
T 2pt7_A          168 IAIGKNVIVCGGTGSGKTTY-IKSIMEFIPKEERIISIEDTEEIVFKHHKN-------YTQLFFGGNITSADCLKSCL--  237 (330)
T ss_dssp             HHHTCCEEEEESTTSCHHHH-HHHGGGGSCTTSCEEEEESSCCCCCSSCSS-------EEEEECBTTBCHHHHHHHHT--
T ss_pred             ccCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCcEEEECCeeccccccchh-------EEEEEeCCChhHHHHHHHHh--
Confidence            46789999999999999999 99999999888999999875422111 111       12222111112222233333  


Q ss_pred             cCCcceEEEecccc
Q 013567          219 SGAIDLICVDSVSA  232 (440)
Q Consensus       219 ~~~~~lvVIDsl~~  232 (440)
                      ..+++++++|....
T Consensus       238 ~~~p~ilildE~~~  251 (330)
T 2pt7_A          238 RMRPDRIILGELRS  251 (330)
T ss_dssp             TSCCSEEEECCCCS
T ss_pred             hhCCCEEEEcCCCh
Confidence            24789999998654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.04  E-value=3.2e-06  Score=87.77  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc-E-EEEcC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN-A-MLVDA  179 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~-v-v~id~  179 (440)
                      +++|+++.|.|||||||||| +++++++..+.+| . +++++
T Consensus       135 i~~Ge~v~IvGpnGsGKSTL-lr~L~Gl~~p~~G~~pI~vdg  175 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSL-SRTLCSYALKFNAYQPLYINL  175 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHH-HHHHHHTTHHHHCCCCEEEEC
T ss_pred             eCCCCEEEEECCCCCCHHHH-HHHHhCcccccCCceeEEEcC
Confidence            46899999999999999999 9999999887777 5 88886

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.99  E-value=1.8e-05  Score=73.68  Aligned_cols=118  Identities=18%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---ChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .+|.++.++|+.|+||||.+++.+.++...+.+++++...-..   ......++|+..+.+.+...   +++++.+.   
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~---~~~~~~~~---   99 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS---KDIFKHIT---   99 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSG---GGGGGGCC---
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCH---HHHHHHHh---
Confidence            5689999999999999999999999999999999998643221   11245556665544433221   22222111   


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                        ...++|+||..+.+.+ ..                + ..++.|   + ..+++||+.....+--+..|+
T Consensus       100 --~~~dvViIDEaQF~~~-~~----------------V-~~l~~l---~-~~~~~Vi~~Gl~~DF~~~~F~  146 (214)
T 2j9r_A          100 --EEMDVIAIDEVQFFDG-DI----------------V-EVVQVL---A-NRGYRVIVAGLDQDFRGLPFG  146 (214)
T ss_dssp             --SSCCEEEECCGGGSCT-TH----------------H-HHHHHH---H-HTTCEEEEEECSBCTTSCBCT
T ss_pred             --cCCCEEEEECcccCCH-HH----------------H-HHHHHH---h-hCCCEEEEEecccccccCccc
Confidence              2579999999987642 10                1 233332   3 349999999887765554444

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.97  E-value=1.1e-05  Score=87.52  Aligned_cols=23  Identities=39%  Similarity=0.702  Sum_probs=20.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~l  163 (440)
                      |++|++++|+|||||||||| +++
T Consensus       345 I~~Ge~vaIiGpnGsGKSTL-l~~  367 (670)
T 3ux8_A          345 IPLGTFVAVTGVSGSGKSTL-VNE  367 (670)
T ss_dssp             EETTSEEEEECSTTSSHHHH-HTT
T ss_pred             ecCCCEEEEEeeCCCCHHHH-HHH
Confidence            67899999999999999999 544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.91  E-value=0.0001  Score=72.09  Aligned_cols=107  Identities=20%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             ccccCcHHHHHHhcCCCCC-------CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhh
Q 013567          124 TFPSGCLTLDLALGGGLPK-------GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKA  190 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~-------G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~  190 (440)
                      .+..+...|+..++++..+       |.++.+.|++|+||||++.+++..+...+..+++++........      +++.
T Consensus        72 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~  151 (297)
T 1j8m_F           72 FIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQ  151 (297)
T ss_dssp             HHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhcc
Confidence            4567788899888655333       88999999999999999888888887778889999876432211      2333


Q ss_pred             hcccccceeecCCCCHHHHHH-HHHHHHhcCCcceEEEeccccc
Q 013567          191 LGVDVENLIVCQPDNGEMALE-IADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       191 lGv~~~~l~i~~~~~~ee~l~-~i~~l~~~~~~~lvVIDsl~~l  233 (440)
                      .|++.-.  .....+..+++. .+.. .+..+.++|+||....+
T Consensus       152 ~~v~v~~--~~~~~~p~~~~~~~l~~-~~~~~~D~ViIDTpg~~  192 (297)
T 1j8m_F          152 IGVPVYG--EPGEKDVVGIAKRGVEK-FLSEKMEIIIVDTAGRH  192 (297)
T ss_dssp             HTCCEEC--CTTCCCHHHHHHHHHHH-HHHTTCSEEEEECCCSC
T ss_pred             CCeEEEe--cCCCCCHHHHHHHHHHH-HHhCCCCEEEEeCCCCc
Confidence            4443210  011234444433 3333 23356899999996544

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.89  E-value=0.0001  Score=69.44  Aligned_cols=116  Identities=19%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS  219 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~  219 (440)
                      .|.+..++|+.|+||||.+++.+.++...+.+++++...-...  .....++|+..+.+.+...   +++++.+      
T Consensus        18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~---~di~~~~------   88 (234)
T 2orv_A           18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL---RDVAQEA------   88 (234)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSG---GGGHHHH------
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCH---HHHHHHh------
Confidence            5899999999999999999999999998899999886432211  2344555665544443322   3333332      


Q ss_pred             CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567          220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN  289 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~  289 (440)
                      ...++|+||.++-+..                       +..+.+.+.+.+++||+.....+--+..|+.
T Consensus        89 ~~~dvViIDEaQF~~~-----------------------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~  135 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD-----------------------IVEFCEAMANAGKTVIVAALDGTFQRKPFGA  135 (234)
T ss_dssp             TTCSEEEESSGGGCTT-----------------------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTT
T ss_pred             ccCCEEEEEchhhhhh-----------------------HHHHHHHHHhCCCEEEEEecccccccCCccc
Confidence            4589999999887631                       1122233345799999998887755554543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.87  E-value=1.8e-05  Score=71.45  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      .++|+||||+||||| ++++.+...
T Consensus         2 ~i~l~G~nGsGKTTL-l~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTL-VKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHH-HHHHHHHHG
T ss_pred             EEEEECCCCCCHHHH-HHHHHHHhC
Confidence            689999999999999 888888874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.0001  Score=75.91  Aligned_cols=125  Identities=21%  Similarity=0.235  Sum_probs=72.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .|+++-+=++++||||+|||+||-.++..+   +...+++++.......                ....+..+..+-...
T Consensus       210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk~----------------~Gese~~ir~~F~~A  270 (437)
T 4b4t_L          210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDKY----------------IGESARIIREMFAYA  270 (437)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCSS----------------SSHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcccc----------------chHHHHHHHHHHHHH
Confidence            478888889999999999999966555443   3455556543322110                011222233333334


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +...+.+|+||.+-++.+.....+..++.   ...+.+..+|..+-.+-...++.||.+|.-.+.+.
T Consensus       271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD  334 (437)
T 4b4t_L          271 KEHEPCIIFMDEVDAIGGRRFSEGTSADR---EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD  334 (437)
T ss_dssp             HHSCSEEEEEECCCSSSCCCSSSCCSSTT---HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred             HhcCCceeeeecccccccccccCCCCcch---HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence            45678899999999988643322211111   22334555565555444445677777766555443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.84  E-value=2.9e-05  Score=78.39  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      +++|++++|+||+||||||| ++++.+...+. .+.+++... .....+...+++.+++..=.++...   ...+...+.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTl-l~~l~~~~~~~~~g~I~~~e~-~~e~~~~~~~~~v~Q~~~g~~~~~~---~~~l~~~L~  207 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTT-IASMIDYINQTKSYHIITIED-PIEYVFKHKKSIVNQREVGEDTKSF---ADALRAALR  207 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHH-HHHHHHHHHHHSCCEEEEEES-SCCSCCCCSSSEEEEEEBTTTBSCS---HHHHHHHTT
T ss_pred             hcCCCEEEEECCCCCCHHHH-HHHHHhhcCcCCCcEEEEecc-cHhhhhccCceEEEeeecCCCHHHH---HHHHHHHhh
Confidence            78899999999999999999 88888887764 555543322 2221122223333221000011122   123333333


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                       .+++++++|.+...   .                .+..++    ..+ ..|.+|+.+.|..+
T Consensus       208 -~~pd~illdE~~d~---e----------------~~~~~l----~~~-~~g~~vi~t~H~~~  245 (372)
T 2ewv_A          208 -EDPDVIFVGEMRDL---E----------------TVETAL----RAA-ETGHLVFGTLHTNT  245 (372)
T ss_dssp             -SCCSEEEESCCCSH---H----------------HHHHHH----HHH-TTTCEEEECCCCCS
T ss_pred             -hCcCEEEECCCCCH---H----------------HHHHHH----HHH-hcCCEEEEEECcch
Confidence             37899999987510   0                011122    222 46889999999865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.84  E-value=0.00022  Score=70.80  Aligned_cols=85  Identities=11%  Similarity=0.078  Sum_probs=52.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      .+.|+||||+|||||+..++...... +..++|++........     +...+|....    ....+..++...+...+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~  121 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP----RRGLSRDEFLALLVEHLR  121 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC----SSCCCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC----CCCCCHHHHHHHHHHHHh
Confidence            89999999999999965555444433 4678899865544331     2233333211    112345555655555443


Q ss_pred             -cCCcceEEEeccccc
Q 013567          219 -SGAIDLICVDSVSAL  233 (440)
Q Consensus       219 -~~~~~lvVIDsl~~l  233 (440)
                       ...+.+++||.+..+
T Consensus       122 ~~~~~~vlilDE~~~l  137 (389)
T 1fnn_A          122 ERDLYMFLVLDDAFNL  137 (389)
T ss_dssp             HTTCCEEEEEETGGGS
T ss_pred             hcCCeEEEEEECcccc
Confidence             345779999998876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.84  E-value=8e-05  Score=76.47  Aligned_cols=124  Identities=19%  Similarity=0.251  Sum_probs=72.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      |+++.+=+.++||||+|||+||-.++..+   +...+.+++.+.....    +            ...+..+..+-...+
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~~----~------------Ge~e~~ir~lF~~A~  262 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHKY----L------------GEGPRMVRDVFRLAR  262 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCSS----C------------SHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhccc----c------------chhHHHHHHHHHHHH
Confidence            78888889999999999999966555443   3455556544322110    1            111222222222233


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      ...+.++++|.+-++.+........++.   ...+.+.++|..+-.+....++.||.+|...+.+.
T Consensus       263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD  325 (428)
T 4b4t_K          263 ENAPSIIFIDEVDSIATKRFDAQTGSDR---EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD  325 (428)
T ss_dssp             HTCSEEEEEECTHHHHCSCSSSCSCCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred             HcCCCeeechhhhhhhccccCCCCCCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence            4578899999998887533221111111   23455677777776666667778888776655443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.83  E-value=8.9e-05  Score=70.91  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=46.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      |+.++.-+.|+||||+|||+||..++..+   +...++++........                ....+..+..+-....
T Consensus        47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~  107 (285)
T 3h4m_A           47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKF----------------IGEGASLVKDIFKLAK  107 (285)
T ss_dssp             CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCS----------------TTHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhc----------------cchHHHHHHHHHHHHH
Confidence            67788889999999999999965554332   4456666543221110                0111222222222233


Q ss_pred             cCCcceEEEecccccCC
Q 013567          219 SGAIDLICVDSVSALTP  235 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~  235 (440)
                      ...+.+++||.+..+.+
T Consensus       108 ~~~~~vl~iDEid~l~~  124 (285)
T 3h4m_A          108 EKAPSIIFIDEIDAIAA  124 (285)
T ss_dssp             HTCSEEEEEETTHHHHB
T ss_pred             HcCCeEEEEECHHHhcc
Confidence            45678999999988864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.82  E-value=8e-06  Score=72.54  Aligned_cols=41  Identities=20%  Similarity=0.089  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      -+++|+++.|.||+||||||| ++++.+.. +..+.+.+++..
T Consensus        29 ~i~~Ge~v~L~G~nGaGKTTL-lr~l~g~l-~~~G~V~~~g~~   69 (158)
T 1htw_A           29 HTEKAIMVYLNGDLGAGKTTL-TRGMLQGI-GHQGNVKSPTYT   69 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHH-HHHHHHHT-TCCSCCCCCTTT
T ss_pred             ccCCCCEEEEECCCCCCHHHH-HHHHHHhC-CCCCeEEECCEe
Confidence            478999999999999999999 99999998 777777766543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.82  E-value=3.4e-06  Score=77.19  Aligned_cols=51  Identities=35%  Similarity=0.441  Sum_probs=35.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhccccc
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVE  196 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~  196 (440)
                      |+++.|+||||+||||| ++++++..+ ..| +.+++...... .+.+++|+.++
T Consensus         1 G~~i~i~G~nG~GKTTl-l~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~   52 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTL-IHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVV   52 (189)
T ss_dssp             CCCEEEESCCSSCHHHH-HHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEE
T ss_pred             CCEEEEECCCCChHHHH-HHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEE
Confidence            68899999999999999 888888887 556 66655433111 13445565544

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.00012  Score=74.48  Aligned_cols=125  Identities=18%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -|+++-+=+.++||||+|||.||-.++..+   +...+.+++......    .+            ...+..+..+-...
T Consensus       177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk----~v------------Gese~~vr~lF~~A  237 (405)
T 4b4t_J          177 LGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK----YI------------GEGSRMVRELFVMA  237 (405)
T ss_dssp             HTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS----ST------------THHHHHHHHHHHHH
T ss_pred             CCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc----cc------------chHHHHHHHHHHHH
Confidence            377777779999999999999965555443   344555554322111    00            11222222222233


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +...+.+|+||.+-++.+...-....++.   ...+.+.+.|..|-.+....++.||.+|.-.+.+.
T Consensus       238 r~~aP~IIFiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD  301 (405)
T 4b4t_J          238 REHAPSIIFMDEIDSIGSTRVEGSGGGDS---EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD  301 (405)
T ss_dssp             HHTCSEEEEEESSSCCTTSCSCSSSGGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred             HHhCCceEeeecchhhccCCCCCCCCCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence            44678899999999988633222111111   22345666676666555566777777776655543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00014  Score=74.54  Aligned_cols=125  Identities=14%  Similarity=0.192  Sum_probs=72.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .|+++-+=++++||||+|||.||..++..+   +...+.+++.+....    .            ....+..+..+-...
T Consensus       211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~sk----~------------vGesek~ir~lF~~A  271 (437)
T 4b4t_I          211 MGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQK----Y------------LGDGPRLCRQIFKVA  271 (437)
T ss_dssp             HTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCCS----S------------SSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhhc----c------------CchHHHHHHHHHHHH
Confidence            588888889999999999999966555543   234555554322111    0            111222333322333


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +...+.+|+||.+-++.+.....+..++.   ...+.+.+.|..+-......++.||.+|.-.+.+.
T Consensus       272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD  335 (437)
T 4b4t_I          272 GENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD  335 (437)
T ss_dssp             HHTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred             HhcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence            45678899999999988643322221221   22334555665555544456677777776665554

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.79  E-value=7.1e-05  Score=75.80  Aligned_cols=28  Identities=21%  Similarity=0.396  Sum_probs=24.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      -+.+| +++|+|+||+||||| +.++..+.
T Consensus        57 ~~~~G-~~~lvG~NGaGKStL-l~aI~~l~   84 (415)
T 4aby_A           57 ELGGG-FCAFTGETGAGKSII-VDALGLLL   84 (415)
T ss_dssp             ECCSS-EEEEEESHHHHHHHH-THHHHHHT
T ss_pred             ecCCC-cEEEECCCCCCHHHH-HHHHHHHh
Confidence            57889 999999999999999 88886665

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.79  E-value=7.8e-05  Score=68.64  Aligned_cols=49  Identities=24%  Similarity=0.345  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .|..+...+  .+..+.|+||||+|||||+..++..+...+..++|++...
T Consensus        42 ~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           42 ALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             HHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             HHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            344444333  6789999999999999998777777777777888887654

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.76  E-value=0.00013  Score=66.99  Aligned_cols=115  Identities=21%  Similarity=0.226  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS  219 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~  219 (440)
                      .|++..|+|+.|+||||..++.+.+....+.+++|+..+-...  ..+..++|...+-..+.   +.+++.+.    .  
T Consensus        19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~---~~~d~~~~----~--   89 (195)
T 1w4r_A           19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC---LLRDVAQE----A--   89 (195)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEES---SGGGGHHH----H--
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecC---CHHHHHHh----c--
Confidence            5899999999999999888999999998899999998663221  12344445443333322   22333332    1  


Q ss_pred             CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      ..+++|+||.++-+ + .                 +.++++.|   + +.|++||+.....+--+..|+
T Consensus        90 ~~~DvIlIDEaQFf-k-~-----------------~ve~~~~L---~-~~gk~VI~~GL~~DF~~~~F~  135 (195)
T 1w4r_A           90 LGVAVIGIDEGQFF-P-D-----------------IVEFCEAM---A-NAGKTVIVAALDGTFQRKPFG  135 (195)
T ss_dssp             HTCSEEEESSGGGC-T-T-----------------HHHHHHHH---H-HTTCEEEEEEESBCTTSSBCT
T ss_pred             cCCCEEEEEchhhh-H-H-----------------HHHHHHHH---H-HCCCeEEEEecccccccccch
Confidence            24899999999887 4 1                 11223222   2 679999999887765444443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.74  E-value=3.1e-05  Score=86.52  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=23.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .+++|++++|+||||+||||| ++++..+
T Consensus       669 ~~~~g~i~~ItGPNGaGKSTl-Lr~i~~i  696 (918)
T 3thx_B          669 SEDSERVMIITGPNMGGKSSY-IKQVALI  696 (918)
T ss_dssp             CTTSCCEEEEESCCCHHHHHH-HHHHHHH
T ss_pred             cCCCCeEEEEECCCCCchHHH-HHHHHHH
Confidence            367899999999999999999 7776544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.74  E-value=1.9e-05  Score=70.99  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ++++|+++.|.|||||||||| ++++++.  ++.+.+++++..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl-~~~La~~--~~~g~i~i~~d~   44 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTI-AEALANL--PGVPKVHFHSDD   44 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHH-HHHHHTC--SSSCEEEECTTH
T ss_pred             CCCCCeEEEEECCCCCCHHHH-HHHHHhc--cCCCeEEEcccc
Confidence            588999999999999999999 6666665  567888888653

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.73  E-value=2.3e-05  Score=78.41  Aligned_cols=55  Identities=25%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .+.||+..||.++  -+.+|++++|+||||+||||| ++++.+...++.+++.+.++.
T Consensus        54 ~~~tg~~ald~ll--~i~~Gq~~gIiG~nGaGKTTL-l~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           54 PFILGVRAIDGLL--TCGIGQRIGIFAGSGVGKSTL-LGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             EECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHH-HHHHHHHSCCSEEEEEEESCC
T ss_pred             ecCCCCEEEEeee--eecCCCEEEEECCCCCCHHHH-HHHHhcCCCCCEEEEEEeccc
Confidence            4568999999986  688999999999999999999 999999998888888887764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.72  E-value=8.1e-05  Score=73.57  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      ..+..+.|+||+|+|||||+..++..+...   +..++|++........     +...+|....    ....+..++...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~  118 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----FTGLSIAELYRR  118 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC----SSSCCHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHH
Confidence            457799999999999999966655555443   6678888854332221     1222332211    122345565665


Q ss_pred             HHHHHhcC-CcceEEEecccccC
Q 013567          213 ADRMCRSG-AIDLICVDSVSALT  234 (440)
Q Consensus       213 i~~l~~~~-~~~lvVIDsl~~l~  234 (440)
                      +...+... .+.+++||.+..+.
T Consensus       119 l~~~l~~~~~~~vlilDE~~~l~  141 (386)
T 2qby_A          119 LVKAVRDYGSQVVIVLDEIDAFV  141 (386)
T ss_dssp             HHHHHHTCCSCEEEEEETHHHHH
T ss_pred             HHHHHhccCCeEEEEEcChhhhh
Confidence            55554443 37799999988765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.72  E-value=0.00017  Score=71.08  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH-HhhcCCcEEEEcCCC
Q 013567          146 VEIFGPESSGKTTLALHAIAE-VQKLGGNAMLVDAEH  181 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~-~~~~~~~vv~id~E~  181 (440)
                      +.|+||||+||||++ +.+++ +..++.+.+++++..
T Consensus        39 ~ll~Gp~G~GKTtl~-~~la~~l~~~~~g~i~~~~~~   74 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRC-MALLESIFGPGVYRLKIDVRQ   74 (354)
T ss_dssp             EEEECSTTSSHHHHH-HTHHHHHSCTTCCC-------
T ss_pred             EEEECCCCCCHHHHH-HHHHHHHcCCCCCeEEeccee
Confidence            899999999999994 55555 666777777776543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.69  E-value=0.00048  Score=67.56  Aligned_cols=88  Identities=15%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHH-HHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMA-LEI  212 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~-l~~  212 (440)
                      .+|+++.|+|+||+||||++..++..+...++.+++++.. .....       +.+..|++.  +.-........+ ...
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~a  178 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDA  178 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHH
Confidence            5789999999999999999777776666666677777754 33221       333444432  000111222222 222


Q ss_pred             HHHHHhcCCcceEEEecccc
Q 013567          213 ADRMCRSGAIDLICVDSVSA  232 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl~~  232 (440)
                      +... ...++++++||....
T Consensus       179 l~~a-~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          179 VAHA-LARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHH-HHTTCSEEEEEECCC
T ss_pred             HHHH-HhcCCCEEEEECCCc
Confidence            2222 234789999997754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00013  Score=74.96  Aligned_cols=125  Identities=18%  Similarity=0.200  Sum_probs=69.3

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -|+++-+=+.++||||+|||+||-.++..+   +...+.+++......    .            ....+..+..+-...
T Consensus       210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~----~------------vGese~~ir~lF~~A  270 (434)
T 4b4t_M          210 MGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM----Y------------IGEGAKLVRDAFALA  270 (434)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS----C------------SSHHHHHHHHHHHHH
T ss_pred             CCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc----c------------cchHHHHHHHHHHHH
Confidence            478888889999999999999965555443   334555554322111    0            011222222222223


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +...+.+++||.+-++.+.....+..++.   ...+.+...|..|-.+....++.||.+|.-.+.+.
T Consensus       271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~---~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD  334 (434)
T 4b4t_M          271 KEKAPTIIFIDELDAIGTKRFDSEKSGDR---EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD  334 (434)
T ss_dssp             HHHCSEEEEEECTHHHHCCCSSGGGGTTH---HHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred             HhcCCeEEeecchhhhhhccCCCCCCCch---HHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence            34568899999998887533222111111   22334455555554444455677887776655543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.67  E-value=4.7e-05  Score=76.41  Aligned_cols=41  Identities=22%  Similarity=0.380  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      -+++|++++|+||+||||||| ++++.+...+..+.+.++..
T Consensus       171 ~i~~G~~i~ivG~sGsGKSTl-l~~l~~~~~~~~g~I~ie~~  211 (361)
T 2gza_A          171 AVQLERVIVVAGETGSGKTTL-MKALMQEIPFDQRLITIEDV  211 (361)
T ss_dssp             HHHTTCCEEEEESSSSCHHHH-HHHHHTTSCTTSCEEEEESS
T ss_pred             HHhcCCEEEEECCCCCCHHHH-HHHHHhcCCCCceEEEECCc
Confidence            356899999999999999999 99999999888999999854

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.66  E-value=0.00027  Score=69.55  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=49.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      |+..+..-+.|+||||+|||+||..++..+  .+...++++........    .           ..+ +..+..+-...
T Consensus        40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~~----~-----------g~~-~~~~~~lf~~a  101 (322)
T 1xwi_A           40 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSKW----L-----------GES-EKLVKNLFQLA  101 (322)
T ss_dssp             TTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCSS----C-----------CSC-HHHHHHHHHHH
T ss_pred             CCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhhh----h-----------hHH-HHHHHHHHHHH
Confidence            556777889999999999999976665544  23456666654322110    0           111 22222222223


Q ss_pred             hcCCcceEEEecccccCC
Q 013567          218 RSGAIDLICVDSVSALTP  235 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~  235 (440)
                      +...+.+++||.+..+.+
T Consensus       102 ~~~~~~vl~iDEid~l~~  119 (322)
T 1xwi_A          102 RENKPSIIFIDEIDSLCG  119 (322)
T ss_dssp             HHTSSEEEEEETTTGGGC
T ss_pred             HhcCCcEEEeecHHHhcc
Confidence            345678999999998865

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.66  E-value=6.7e-05  Score=82.43  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=23.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      |++++|+||||+||||| ++++.++..
T Consensus       576 g~i~~I~GpNGsGKSTl-Lr~iagl~~  601 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTF-LRQTALIAL  601 (765)
T ss_dssp             SCEEEEESCSSSSHHHH-HHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHH-HHHHHhhhh
Confidence            89999999999999999 888888753

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.66  E-value=0.00037  Score=71.57  Aligned_cols=101  Identities=25%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             HHHHHHhcCCC-------CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccc
Q 013567          130 LTLDLALGGGL-------PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDV  195 (440)
Q Consensus       130 ~~LD~~LgGGi-------~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~  195 (440)
                      ..|-.+|+++-       .++.++.++|++|+||||++..++..+...+..+++++..- ..+.       +....|+..
T Consensus        77 ~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~  155 (433)
T 3kl4_A           77 DELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQV  155 (433)
T ss_dssp             HHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCE
T ss_pred             HHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCce
Confidence            45555664331       24789999999999999999999888888888898888653 2221       223334322


Q ss_pred             cceeecCCCCHHHHHHHHHHHHhcCCcceEEEeccccc
Q 013567          196 ENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       196 ~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l  233 (440)
                      .  ..........+....-......++++++||....+
T Consensus       156 ~--~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~  191 (433)
T 3kl4_A          156 Y--GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRH  191 (433)
T ss_dssp             E--CCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCS
T ss_pred             e--eccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence            1  11112233333322222233357899999987643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.66  E-value=4.2e-05  Score=76.11  Aligned_cols=100  Identities=19%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecC-
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQ-  202 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~-  202 (440)
                      .|+.+. --+.+|.++.|.|+||+||||| ++.+.+...+.++.+.+.+.+....       ....++++.+++..++. 
T Consensus        44 ~l~~i~-~~~~~g~~v~i~G~~GaGKSTL-l~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  121 (337)
T 2qm8_A           44 LIDAVL-PQTGRAIRVGITGVPGVGKSTT-IDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR  121 (337)
T ss_dssp             HHHHHG-GGCCCSEEEEEECCTTSCHHHH-HHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred             HHHhCC-cccCCCeEEEEECCCCCCHHHH-HHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence            344432 3467899999999999999999 8888888877666666555433211       12345666555432221 


Q ss_pred             --C--CCH----HHHHHHHHHHHhcCCcceEEEeccccc
Q 013567          203 --P--DNG----EMALEIADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       203 --~--~~~----ee~l~~i~~l~~~~~~~lvVIDsl~~l  233 (440)
                        +  .+.    ....+.+. .+...+.++++||...-.
T Consensus       122 ~~~~~~~l~G~tr~~~e~~~-~~~~~~~~~iliDT~Gi~  159 (337)
T 2qm8_A          122 PSPSSGTLGGVAAKTRETML-LCEAAGFDVILVETVGVG  159 (337)
T ss_dssp             CCCCCSSHHHHHHHHHHHHH-HHHHTTCCEEEEEECSSS
T ss_pred             cCcccccccchHHHHHHHHH-HHhcCCCCEEEEECCCCC
Confidence              1  111    22222221 234467899999998744

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.66  E-value=6.1e-05  Score=83.39  Aligned_cols=29  Identities=28%  Similarity=0.525  Sum_probs=23.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHH-HHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHA-IAEVQ  168 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~l-i~~~~  168 (440)
                      -|++|++++|+|+|||||||| ++. +.++.
T Consensus       519 ~i~~Geiv~I~G~nGSGKSTL-l~~~L~g~l  548 (842)
T 2vf7_A          519 RFPLGVMTSVTGVSGSGKSTL-VSQALVDAL  548 (842)
T ss_dssp             EEESSSEEEEECCTTSSHHHH-CCCCCHHHH
T ss_pred             EEcCCCEEEEEcCCCcCHHHH-HHHHHHHHH
Confidence            489999999999999999999 553 54443

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=97.64  E-value=0.00019  Score=66.81  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -..|.|..|+|+-|+||||.+++.+.++...+.+++.+...-...   .....+.|...+-+.+...   .++.+.+   
T Consensus        25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i---   98 (219)
T 3e2i_A           25 YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD---   98 (219)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC---
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH---
Confidence            356889999999999999987999999888888888876532211   1245666765554444322   2222211   


Q ss_pred             HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                        ...+++|+||..+-+.+                     .++..|..++ ..|++||+..=..+--+..|+
T Consensus        99 --~~~~dvV~IDEaQFf~~---------------------~~v~~l~~la-~~gi~Vi~~GLd~DF~~~~F~  146 (219)
T 3e2i_A           99 --LTNVDVIGIDEVQFFDD---------------------EIVSIVEKLS-ADGHRVIVAGLDMDFRGEPFE  146 (219)
T ss_dssp             --CTTCSEEEECCGGGSCT---------------------HHHHHHHHHH-HTTCEEEEEEESBCTTSCBCT
T ss_pred             --hcCCCEEEEechhcCCH---------------------HHHHHHHHHH-HCCCEEEEeecccccccCCCc
Confidence              24688999999887642                     1122333444 579999988766654444443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.64  E-value=0.00022  Score=79.85  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      .+++|++++|+||||+||||| ++++
T Consensus       658 ~~~~g~i~~ItGpNGsGKSTl-Lr~i  682 (934)
T 3thx_A          658 EKDKQMFHIITGPNMGGKSTY-IRQT  682 (934)
T ss_dssp             ETTTBCEEEEECCTTSSHHHH-HHHH
T ss_pred             ecCCCeEEEEECCCCCCHHHH-HHHH
Confidence            357899999999999999999 6665

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.64  E-value=0.00092  Score=68.79  Aligned_cols=90  Identities=22%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALEIAD  214 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~~i~  214 (440)
                      ++.++.++|++|+||||++.+++..+.+.+..+++++... ..+.       ++...|++.-..  ....+...+....-
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~-~R~aa~eqL~~~~~~~gvpv~~~--~~~~dp~~i~~~al  175 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT-WRPGAYHQLRQLLDRYHIEVFGN--PQEKDAIKLAKEGV  175 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC-SSTHHHHHHHHHHGGGTCEEECC--TTCCCHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCcEEec--CCCCCHHHHHHHHH
Confidence            3679999999999999999999998888888999998753 2221       334444432111  11223333332222


Q ss_pred             HHHhcCCcceEEEecccccC
Q 013567          215 RMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       215 ~l~~~~~~~lvVIDsl~~l~  234 (440)
                      ...+..+.++++||....+.
T Consensus       176 ~~a~~~~~DvVIIDTaGrl~  195 (443)
T 3dm5_A          176 DYFKSKGVDIIIVDTAGRHK  195 (443)
T ss_dssp             HHHHHTTCSEEEEECCCCSS
T ss_pred             HHHHhCCCCEEEEECCCccc
Confidence            22334568999999876543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.63  E-value=0.00013  Score=80.65  Aligned_cols=27  Identities=33%  Similarity=0.608  Sum_probs=24.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ++|++++|+||||+||||| ++++.++.
T Consensus       605 ~~g~i~~ItGpNGsGKSTl-Lr~iagl~  631 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTY-MRQTALIA  631 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHH-HHHHHHHH
Confidence            6899999999999999999 88887764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.63  E-value=0.00016  Score=80.73  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLAL  161 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL  161 (440)
                      +++|++++|+|+||||||||..
T Consensus       607 I~~Geiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          607 IPLGVFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             EESSSEEEEECSTTSSHHHHHH
T ss_pred             EcCCcEEEEEccCCCChhhhHH
Confidence            6789999999999999999953

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.62  E-value=0.00024  Score=80.42  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      |++++|+||||+||||| ++.+ ++..
T Consensus       789 g~i~~ItGpNgsGKSTl-Lr~i-Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTL-MRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHH-HHHH-HHHH
T ss_pred             CcEEEEECCCCCChHHH-HHHH-HHHH
Confidence            89999999999999999 7777 6543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.00032  Score=72.39  Aligned_cols=124  Identities=16%  Similarity=0.221  Sum_probs=68.7

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -|+++-+=++|+||||+|||+||-.++..+   +...+.+++......    .+            ...+..+..+-...
T Consensus       238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~sk----~v------------Gesek~ir~lF~~A  298 (467)
T 4b4t_H          238 LGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQK----YV------------GEGARMVRELFEMA  298 (467)
T ss_dssp             HTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCCC----SS------------SHHHHHHHHHHHHH
T ss_pred             CCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhcc----cC------------CHHHHHHHHHHHHH
Confidence            388888889999999999999965555443   234455554322111    01            11222222222233


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      +...+.++++|.+-.+.+...-.+. +..  ....+.+...|..|-......++.||.+|.-.+.+
T Consensus       299 r~~aP~IIfiDEiDai~~~R~~~~~-~~~--~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L  361 (467)
T 4b4t_H          299 RTKKACIIFFDEIDAVGGARFDDGA-GGD--NEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL  361 (467)
T ss_dssp             HHTCSEEEEEECCTTTSBCCSSSSC-GGG--GHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred             HhcCCceEeecccccccccccCcCC-Ccc--HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence            4567889999999988753322221 111  12233445555555444444566777776655544

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.60  E-value=0.00019  Score=80.18  Aligned_cols=25  Identities=36%  Similarity=0.611  Sum_probs=21.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      |++|++++|+|+||||||||+..++
T Consensus       647 I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          647 IPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999999944434

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.59  E-value=0.00023  Score=70.42  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMA  209 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~  209 (440)
                      ..+..+.|+||||+|||||+..++..+...      +..++|++........     +...++....    ....+..++
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~  117 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP----FTGLSVGEV  117 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC----SSCCCHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC----CCCCCHHHH
Confidence            346689999999999999976666655433      5678888876544432     2333433211    112335555


Q ss_pred             HHHHHHHHhc-CCcceEEEecccccC
Q 013567          210 LEIADRMCRS-GAIDLICVDSVSALT  234 (440)
Q Consensus       210 l~~i~~l~~~-~~~~lvVIDsl~~l~  234 (440)
                      +..+...+.. +...+++||.+..+.
T Consensus       118 ~~~l~~~l~~~~~~~vlilDEi~~l~  143 (387)
T 2v1u_A          118 YERLVKRLSRLRGIYIIVLDEIDFLP  143 (387)
T ss_dssp             HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred             HHHHHHHHhccCCeEEEEEccHhhhc
Confidence            5555544433 346799999988775

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.51  E-value=0.00014  Score=71.18  Aligned_cols=74  Identities=12%  Similarity=0.058  Sum_probs=48.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCcEEEE---cCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK--LGGNAMLV---DAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIAD  214 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~~~~vv~i---d~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~  214 (440)
                      ..+|.+++|+|++||||||| ++++.+...  +..+.+.+   |+... .....+.+|+. ++..+....+..+.+..+.
T Consensus        77 ~~~g~iigI~G~~GsGKSTl-~~~L~~~l~~~~~~G~i~vi~~d~~~~-~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~  153 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTT-ARVLQALLSRWPEHRRVELITTDGFLH-PNQVLKERGLM-KKKGFPESYDMHRLVKFVS  153 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHH-HHHHHHHHTTSTTCCCEEEEEGGGGBC-CHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHH-HHHHHHHHhhCCCCCeEEEEecCCccC-cHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence            47899999999999999999 788888876  66665555   44332 12223445555 4433344456677766665


Q ss_pred             HH
Q 013567          215 RM  216 (440)
Q Consensus       215 ~l  216 (440)
                      .+
T Consensus       154 ~l  155 (308)
T 1sq5_A          154 DL  155 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.50  E-value=0.00025  Score=68.27  Aligned_cols=38  Identities=37%  Similarity=0.484  Sum_probs=29.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      -+++|  +.|+||||+||||| ++++++....  +.+++++..
T Consensus        42 ~~~~G--vlL~Gp~GtGKTtL-akala~~~~~--~~i~i~g~~   79 (274)
T 2x8a_A           42 VTPAG--VLLAGPPGCGKTLL-AKAVANESGL--NFISVKGPE   79 (274)
T ss_dssp             CCCSE--EEEESSTTSCHHHH-HHHHHHHTTC--EEEEEETTT
T ss_pred             CCCCe--EEEECCCCCcHHHH-HHHHHHHcCC--CEEEEEcHH
Confidence            34555  99999999999999 7777776644  577777654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.49  E-value=0.00058  Score=66.57  Aligned_cols=81  Identities=16%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      .+|+++.|+|++|+||||++..++..+.. .|..+.+++... ....       +++..|+..     ....+..++...
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~-~r~~a~eqL~~~~~~~gl~~-----~~~~~~~~l~~a  176 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT-YRIAAVEQLKTYAELLQAPL-----EVCYTKEEFQQA  176 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC-SSTTHHHHHHHHHTTTTCCC-----CBCSSHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc-ccchHHHHHHHHHHhcCCCe-----EecCCHHHHHHH
Confidence            36899999999999999997776666653 566888888654 2211       223334322     111233343333


Q ss_pred             HHHHHhcCCcceEEEecc
Q 013567          213 ADRMCRSGAIDLICVDSV  230 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl  230 (440)
                      +..+   .++++++||..
T Consensus       177 l~~~---~~~dlvIiDT~  191 (296)
T 2px0_A          177 KELF---SEYDHVFVDTA  191 (296)
T ss_dssp             HHHG---GGSSEEEEECC
T ss_pred             HHHh---cCCCEEEEeCC
Confidence            3322   46899999944

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.47  E-value=0.00069  Score=63.52  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=41.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      |++...-+.|+||||+|||++|..++...   +...++++........               .......+...+.. ..
T Consensus        35 g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-a~   95 (262)
T 2qz4_A           35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI---------------GGLGAARVRSLFKE-AR   95 (262)
T ss_dssp             -CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS---------------TTHHHHHHHHHHHH-HH
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc---------------cChhHHHHHHHHHH-HH
Confidence            55566678999999999999965554433   4566777654322110               00011112222222 22


Q ss_pred             cCCcceEEEecccccCC
Q 013567          219 SGAIDLICVDSVSALTP  235 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~  235 (440)
                      ...+.+++||.+..+..
T Consensus        96 ~~~~~vl~iDeid~l~~  112 (262)
T 2qz4_A           96 ARAPCIVYIDEIDAVGK  112 (262)
T ss_dssp             HTCSEEEEEECC-----
T ss_pred             hcCCeEEEEeCcchhhc
Confidence            34578999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.43  E-value=0.00053  Score=60.17  Aligned_cols=77  Identities=10%  Similarity=0.163  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhh-------cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCH----HHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQK-------LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG----EMAL  210 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~-------~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~----ee~l  210 (440)
                      .+..+.|+||+|+|||+|+..++..+..       .+..+++++......                 .....    ..+.
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  104 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-----------------GAKYRGEFEERLK  104 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT-----------------TTCSHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc-----------------cCCccccHHHHHH
Confidence            3567899999999999997777666644       234455554321000                 00111    1122


Q ss_pred             HHHHHHHhcCCcceEEEecccccCC
Q 013567          211 EIADRMCRSGAIDLICVDSVSALTP  235 (440)
Q Consensus       211 ~~i~~l~~~~~~~lvVIDsl~~l~~  235 (440)
                      ..+..+.+.....+++||.+..+.+
T Consensus       105 ~~~~~~~~~~~~~vl~iDe~~~l~~  129 (195)
T 1jbk_A          105 GVLNDLAKQEGNVILFIDELHTMVG  129 (195)
T ss_dssp             HHHHHHHHSTTTEEEEEETGGGGTT
T ss_pred             HHHHHHhhcCCCeEEEEeCHHHHhc
Confidence            2333333445567999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.43  E-value=0.00017  Score=72.24  Aligned_cols=39  Identities=31%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CCCCC--CCEEEEEcCCCCcHHHHHHHHHHHHhhcCC----cEEEE
Q 013567          138 GGLPK--GRIVEIFGPESSGKTTLALHAIAEVQKLGG----NAMLV  177 (440)
Q Consensus       138 GGi~~--G~ii~I~G~~GsGKTTLaL~li~~~~~~~~----~vv~i  177 (440)
                      --+++  |+.++|+|+|||||||| ++++++...+..    |.+++
T Consensus       163 ~~v~~~lg~k~~IvG~nGsGKSTL-lk~L~gl~~~~~~~e~G~i~i  207 (365)
T 1lw7_A          163 KEARPFFAKTVAILGGESSGKSVL-VNKLAAVFNTTSAWEYGREFV  207 (365)
T ss_dssp             TTTGGGTCEEEEEECCTTSHHHHH-HHHHHHHTTCEEECCTTHHHH
T ss_pred             HHHHHhhhCeEEEECCCCCCHHHH-HHHHHHHhCCCcchhhHHHHH
Confidence            45666  99999999999999999 899999987665    55665

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.43  E-value=8.9e-05  Score=72.19  Aligned_cols=123  Identities=22%  Similarity=0.248  Sum_probs=64.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -|++++..+.|+||||+|||+||..+ ++..  +.+.+++++..    .....+|-.        ......++..+    
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~al-a~~~--~~~~i~v~~~~----l~~~~~g~~--------~~~~~~~f~~a----  104 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAI-ANEC--QANFISIKGPE----LLTMWFGES--------EANVREIFDKA----  104 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHH-HHHT--TCEEEEECHHH----HHHHHHTTC--------TTHHHHHHHHH----
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHH-HHHh--CCCEEEEEhHH----HHhhhcCch--------HHHHHHHHHHH----
Confidence            47889999999999999999995544 4433  35566665321    111111111        11122222222    


Q ss_pred             hcCCcceEEEecccccCCchhhc-ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIE-GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~-~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ....+.++++|.+..+.+..... ++.+..    ..+.+.+.+..+..+....++.||.+++..+.+
T Consensus       105 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~----~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l  167 (301)
T 3cf0_A          105 RQAAPCVLFFDELDSIAKARGGNIGDGGGA----ADRVINQILTEMDGMSTKKNVFIIGATNRPDII  167 (301)
T ss_dssp             HHTCSEEEEECSTTHHHHHHTTTTCCSSCS----CCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred             HhcCCeEEEEEChHHHhhccCCCcCCcchH----HHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence            23457899999998876422110 000000    012233444444333334567788887765544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.42  E-value=0.00097  Score=62.79  Aligned_cols=72  Identities=21%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcce
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDL  224 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~l  224 (440)
                      -+.|+||||+|||||| +.+++..  +...++++........    .           ......+...... .....+.+
T Consensus        47 ~vll~G~~GtGKT~la-~~la~~~--~~~~~~i~~~~~~~~~----~-----------~~~~~~~~~~~~~-a~~~~~~i  107 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLA-KAIAGEA--KVPFFTISGSDFVEMF----V-----------GVGASRVRDMFEQ-AKKAAPCI  107 (257)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHHHH--TCCEEEECSCSSTTSC----C-----------CCCHHHHHHHHHH-HHTTCSEE
T ss_pred             eEEEECcCCCCHHHHH-HHHHHHc--CCCEEEEeHHHHHHHh----h-----------hhhHHHHHHHHHH-HHHcCCee
Confidence            3889999999999995 5555544  3456777654322110    0           1112222222222 22345679


Q ss_pred             EEEecccccCC
Q 013567          225 ICVDSVSALTP  235 (440)
Q Consensus       225 vVIDsl~~l~~  235 (440)
                      +++|.+..+.+
T Consensus       108 l~iDeid~l~~  118 (257)
T 1lv7_A          108 IFIDEIDAVGR  118 (257)
T ss_dssp             EEETTHHHHTC
T ss_pred             ehhhhhhhhcc
Confidence            99999977764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.41  E-value=0.00028  Score=63.92  Aligned_cols=37  Identities=22%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..+.|+||+|+|||+|+..++..+...+..++|++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~   91 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP   91 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence            6889999999999999777776666667788888653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.40  E-value=8.8e-05  Score=67.98  Aligned_cols=30  Identities=30%  Similarity=0.512  Sum_probs=25.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      -+++|++++|.|||||||||| ++++.++..
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTL-l~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTV-VRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHH-HHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHH-HHHHHhhCC
Confidence            478999999999999999999 899998874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.40  E-value=0.00022  Score=69.20  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .|+++...+.|+||||+|||+||..++..+   +...++++.....+    ...|..        +....+++..+..+.
T Consensus        31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~----~~~g~~--------~~~i~~~f~~a~~~~   95 (293)
T 3t15_A           31 PNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELES----GNAGEP--------AKLIRQRYREAAEII   95 (293)
T ss_dssp             TTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHC----C---HH--------HHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhh----ccCchh--------HHHHHHHHHHHHHHH
Confidence            466667789999999999999966555544   45666665421100    000100        001122333343344


Q ss_pred             hcCCcceEEEecccccCC
Q 013567          218 RSGAIDLICVDSVSALTP  235 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~  235 (440)
                      +...+.+++||.+-.+.+
T Consensus        96 ~~~~~~vl~iDEiD~~~~  113 (293)
T 3t15_A           96 RKGNMCCLFINDLDAGAG  113 (293)
T ss_dssp             TTSSCCCEEEECCC----
T ss_pred             hcCCCeEEEEechhhhcC
Confidence            566788999999988775

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.39  E-value=0.0012  Score=64.88  Aligned_cols=26  Identities=35%  Similarity=0.638  Sum_probs=21.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +.+| +++|+|+||+||||| +..+.-+
T Consensus        22 ~~~g-~~~i~G~NGsGKS~l-l~ai~~l   47 (322)
T 1e69_A           22 FSDR-VTAIVGPNGSGKSNI-IDAIKWV   47 (322)
T ss_dssp             CCSS-EEEEECCTTTCSTHH-HHHHHHT
T ss_pred             cCCC-cEEEECCCCCcHHHH-HHHHHHH
Confidence            3566 999999999999999 7777744

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.38  E-value=0.00068  Score=66.21  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..+..+.|+||||+|||||+..++..+...+..++|++.+
T Consensus        35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A           35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            4567899999999999999666666555557788888754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.38  E-value=0.0026  Score=59.61  Aligned_cols=45  Identities=24%  Similarity=0.183  Sum_probs=37.2

Q ss_pred             CCCCE-EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh
Q 013567          141 PKGRI-VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP  185 (440)
Q Consensus       141 ~~G~i-i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~  185 (440)
                      .+|++ +.+.|++|+||||++++++..+...|..+++++.+..-..
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~   48 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA   48 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence            35776 6778899999999999999999998989998888754333

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.37  E-value=8e-05  Score=69.17  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=27.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      -+++|++++|+|||||||||| ++++.+.. +  |.+++
T Consensus        19 ~i~~G~~~~lvGpsGsGKSTL-l~~L~g~~-p--G~i~~   53 (218)
T 1z6g_A           19 SMNNIYPLVICGPSGVGKGTL-IKKLLNEF-P--NYFYF   53 (218)
T ss_dssp             ---CCCCEEEECSTTSSHHHH-HHHHHHHS-T--TTEEE
T ss_pred             ecCCCCEEEEECCCCCCHHHH-HHHHHhhC-C--CcEEE
Confidence            367899999999999999999 88888877 4  44555

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.36  E-value=7.9e-05  Score=79.93  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=39.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCC------CChhhhhhhcccccceeecCCCCHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHA------FDPSYSKALGVDVENLIVCQPDNGEMALEI  212 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~------~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~  212 (440)
                      ++|+||+||||||| ++++.+...+ +.|.+++++...      ....+.+.+|+.+++..+.+..++.+.+..
T Consensus        48 iaIvG~nGsGKSTL-L~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~  120 (608)
T 3szr_A           48 IAVIGDQSSGKSSV-LEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK  120 (608)
T ss_dssp             EECCCCTTSCHHHH-HHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred             EEEECCCCChHHHH-HHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence            89999999999999 9999999877 677777766541      112345667777776555544444444433

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.36  E-value=0.00096  Score=65.79  Aligned_cols=41  Identities=22%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..+|+++.|+|++|+||||++..++..+...++.+++++..
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D  142 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD  142 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35789999999999999999888877777677888888765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.36  E-value=0.0018  Score=67.29  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=62.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      -+|+|  +.|+||||+|||+|| +.+++..  +...++++........    .|.           ....+...+... .
T Consensus        47 ~~p~g--vLL~GppGtGKT~La-raia~~~--~~~f~~is~~~~~~~~----~g~-----------~~~~~r~lf~~A-~  105 (476)
T 2ce7_A           47 RMPKG--ILLVGPPGTGKTLLA-RAVAGEA--NVPFFHISGSDFVELF----VGV-----------GAARVRDLFAQA-K  105 (476)
T ss_dssp             CCCSE--EEEECCTTSSHHHHH-HHHHHHH--TCCEEEEEGGGTTTCC----TTH-----------HHHHHHHHHHHH-H
T ss_pred             CCCCe--EEEECCCCCCHHHHH-HHHHHHc--CCCeeeCCHHHHHHHH----hcc-----------cHHHHHHHHHHH-H
Confidence            34555  889999999999995 4454433  4456666644322110    010           111122222222 2


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ...+.+++||.+..+.+.......-++.   ...+.+.+.+..+..+-...++.||.+++..+.+
T Consensus       106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~---~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          106 AHAPCIVFIDEIDAVGRHRGAGLGGGHD---EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HTCSEEEEEETGGGTCCC---------C---HHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             hcCCCEEEEechhhhhhhcccccCcCcH---HHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            3568899999999886422110000110   1122334444444433345678888888876544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.34  E-value=0.0029  Score=64.81  Aligned_cols=87  Identities=28%  Similarity=0.360  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeec-CCCCHHHHHH-H
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVC-QPDNGEMALE-I  212 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~-~~~~~ee~l~-~  212 (440)
                      +++++.|+|++|+||||++..++..+...+..+++++.. ...+.       +++..|++.   +.. ...+..++.. .
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v---~~~~~~~~p~~i~~~~  172 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPV---LEVMDGESPESIRRRV  172 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCE---EECCTTCCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc-ccCchhHHHHHHhcccCCccE---EecCCCCCHHHHHHHH
Confidence            688999999999999999888887777677788888864 33332       122333321   111 1123344422 2


Q ss_pred             HHHHHhcCCcceEEEeccccc
Q 013567          213 ADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl~~l  233 (440)
                      +..+ +....++++||....+
T Consensus       173 l~~~-~~~~~DvVIIDTaG~l  192 (425)
T 2ffh_A          173 EEKA-RLEARDLILVDTAGRL  192 (425)
T ss_dssp             HHHH-HHTTCSEEEEECCCCS
T ss_pred             HHHH-HHCCCCEEEEcCCCcc
Confidence            3322 2356899999987654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.34  E-value=9.3e-05  Score=71.30  Aligned_cols=51  Identities=22%  Similarity=0.218  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccccc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVE  196 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~  196 (440)
                      .++|+||||+||||| ++++.+...+..|.++++++........+.+++.++
T Consensus         4 ~v~lvG~nGaGKSTL-ln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q   54 (270)
T 3sop_A            4 NIMVVGQSGLGKSTL-VNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIE   54 (270)
T ss_dssp             EEEEEESSSSSHHHH-HHHHHHHHC------------CCCCCSCCEEEESCC
T ss_pred             EEEEECCCCCCHHHH-HHHHhCCCCCCCCccccCCcccCcceeeeeeEEEee
Confidence            478999999999999 999999999988999888775533333344555544

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.32  E-value=0.0024  Score=61.20  Aligned_cols=76  Identities=22%  Similarity=0.278  Sum_probs=45.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      .++..+.|+||||+||||+|..++.. .  +...++++........                ....+.....+-......
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~-~--~~~~~~i~~~~l~~~~----------------~~~~~~~~~~~~~~~~~~  112 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATE-C--SATFLNISAASLTSKY----------------VGDGEKLVRALFAVARHM  112 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHH-T--TCEEEEEESTTTSSSS----------------CSCHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHH-h--CCCeEEeeHHHHhhcc----------------cchHHHHHHHHHHHHHHc
Confidence            35678999999999999996554433 2  3445556543221100                112233333322333345


Q ss_pred             CcceEEEecccccCC
Q 013567          221 AIDLICVDSVSALTP  235 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~  235 (440)
                      .+.+++||.+..+.+
T Consensus       113 ~~~vl~iDEid~l~~  127 (297)
T 3b9p_A          113 QPSIIFIDEVDSLLS  127 (297)
T ss_dssp             CSEEEEEETGGGTSB
T ss_pred             CCcEEEeccHHHhcc
Confidence            678999999998875

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.30  E-value=0.00055  Score=67.13  Aligned_cols=79  Identities=25%  Similarity=0.316  Sum_probs=46.9

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      ++..+..-+.|+||||+|||+||..++...   +...++++....    .....            ...+..+..+-...
T Consensus        46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l----~~~~~------------g~~~~~~~~~f~~a  106 (322)
T 3eie_A           46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----VSKWM------------GESEKLVKQLFAMA  106 (322)
T ss_dssp             TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH----HTTTG------------GGHHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH----hhccc------------chHHHHHHHHHHHH
Confidence            445566789999999999999966554442   445566654211    00001            11222232222233


Q ss_pred             hcCCcceEEEecccccCC
Q 013567          218 RSGAIDLICVDSVSALTP  235 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~  235 (440)
                      +...+.+++||.+..+.+
T Consensus       107 ~~~~~~vl~iDEid~l~~  124 (322)
T 3eie_A          107 RENKPSIIFIDQVDALTG  124 (322)
T ss_dssp             HHTSSEEEEEECGGGGSC
T ss_pred             HhcCCeEEEechhhhhhc
Confidence            445678999999998875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.28  E-value=0.00013  Score=66.82  Aligned_cols=30  Identities=30%  Similarity=0.450  Sum_probs=26.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL  170 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~  170 (440)
                      .++|++++|.|||||||||| ++++.+...+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl-~~~l~~~~~~   48 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTL-SNPLAAALSA   48 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHH-HHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence            57899999999999999999 7888888765

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.27  E-value=0.0001  Score=68.76  Aligned_cols=42  Identities=19%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAE  180 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E  180 (440)
                      --+++|+++.|.|||||||||| ++++.+...+  ..+.+.+++.
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTL-lk~L~g~~~p~~~~g~v~~ttr   54 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSL-IQALLKTQPLYDTQVSVSHTTR   54 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHH-HHHHHHHSCTTTEEECCCEECS
T ss_pred             ccCCCCcEEEEECCCCCCHHHH-HHHHhccCCCCceEEEEEecCC
Confidence            3578999999999999999999 8888888753  2344445443

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.26  E-value=0.00073  Score=67.39  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=45.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      ++..+..-+.|+||||+|||+||..++..+   +...++++....     ...        ++  ... +..+..+-...
T Consensus        79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l-----~~~--------~~--g~~-~~~~~~~f~~a  139 (355)
T 2qp9_X           79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSK--------WM--GES-EKLVKQLFAMA  139 (355)
T ss_dssp             SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHH-----HSC--------C-----C-HHHHHHHHHHH
T ss_pred             cCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHH-----hhh--------hc--chH-HHHHHHHHHHH
Confidence            455666678999999999999966655544   344555543210     000        00  011 22222222223


Q ss_pred             hcCCcceEEEecccccCC
Q 013567          218 RSGAIDLICVDSVSALTP  235 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~  235 (440)
                      +...+.+|+||.+..+.+
T Consensus       140 ~~~~~~vl~iDEid~l~~  157 (355)
T 2qp9_X          140 RENKPSIIFIDQVDALTG  157 (355)
T ss_dssp             HHTSSEEEEEECGGGGTC
T ss_pred             HHcCCeEEEEechHhhcc
Confidence            345678999999998875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.25  E-value=0.0051  Score=55.07  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +.|+||+|+|||+++..++..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~   64 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFG   64 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            899999999999997777666543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.24  E-value=0.00018  Score=65.03  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=27.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +++|++++|.|||||||||| ++++.+.. +   .++++..
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl-~~~L~~~~-~---~~~~~~~   39 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSL-VRALVKAL-A---EIKISIS   39 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHH-HHHHHHHS-S---SEEECCC
T ss_pred             CCCCcEEEEECcCCCCHHHH-HHHHHhhC-C---CeEEece
Confidence            36899999999999999999 78887774 2   3555543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.23  E-value=0.00037  Score=61.19  Aligned_cols=28  Identities=14%  Similarity=0.177  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      .+..+.|+||+|+|||+|+..++..+..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3557799999999999997777666544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.21  E-value=0.00027  Score=69.38  Aligned_cols=43  Identities=30%  Similarity=0.564  Sum_probs=34.2

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      +.|+.+. =.+++|++++|+|||||||||| ++++.++.   .|.++.
T Consensus       114 ~vL~~vs-l~i~~Ge~vaIvGpsGsGKSTL-l~lL~gl~---~G~I~~  156 (305)
T 2v9p_A          114 NALKLWL-KGIPKKNCLAFIGPPNTGKSML-CNSLIHFL---GGSVLS  156 (305)
T ss_dssp             HHHHHHH-HTCTTCSEEEEECSSSSSHHHH-HHHHHHHH---TCEEEC
T ss_pred             hhhccce-EEecCCCEEEEECCCCCcHHHH-HHHHhhhc---CceEEE
Confidence            3455543 5899999999999999999999 89999988   444543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.21  E-value=0.00023  Score=64.79  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF  183 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~  183 (440)
                      ++|+++.|.|+|||||||+ ++++.+..    +.+++++....
T Consensus        27 ~~g~~i~l~G~~GsGKSTl-~~~L~~~~----g~~~i~~d~~~   64 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTI-AHGVADET----GLEFAEADAFH   64 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHH-HHHHHHHH----CCEEEEGGGGS
T ss_pred             CCCcEEEEECCCCCCHHHH-HHHHHHhh----CCeEEcccccc
Confidence            5799999999999999999 66666655    56788876543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.16  E-value=0.0022  Score=61.69  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA  221 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~  221 (440)
                      ...+.|+||||+|||++|..++......+...++++........ ..+.+|...........   ..+.    ..+....
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~----~~~~~~~  119 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLT----EAVRRRP  119 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHH----HHHHHCS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHH----HHHHhCC
Confidence            35899999999999999655555554445668888765443332 33445544332211110   1111    2222234


Q ss_pred             cceEEEecccccC
Q 013567          222 IDLICVDSVSALT  234 (440)
Q Consensus       222 ~~lvVIDsl~~l~  234 (440)
                      ..+++||.+..+.
T Consensus       120 ~~vl~lDEi~~l~  132 (311)
T 4fcw_A          120 YSVILFDAIEKAH  132 (311)
T ss_dssp             SEEEEEETGGGSC
T ss_pred             CeEEEEeChhhcC
Confidence            5799999987764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.14  E-value=0.00049  Score=70.71  Aligned_cols=51  Identities=31%  Similarity=0.354  Sum_probs=40.8

Q ss_pred             HHHHHhcCC---C--CCC--CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          131 TLDLALGGG---L--PKG--RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       131 ~LD~~LgGG---i--~~G--~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .|..++++.   +  .++  .++.|+|++|+||||++.+++..+.+.+.++++++...
T Consensus        80 ~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           80 ELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             HHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             HHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            456667554   4  223  59999999999999999999988888888999998763

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.12  E-value=0.0004  Score=68.31  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=28.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLG  171 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~  171 (440)
                      +++|++++|.|||||||||| ++++.++..+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL-~~~L~gll~~~  117 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTT-ARVLQALLARW  117 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHH-HHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCchHHHH-HHHHHhhcccc
Confidence            78999999999999999999 88898988764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.12  E-value=0.0038  Score=60.05  Aligned_cols=40  Identities=25%  Similarity=0.349  Sum_probs=28.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E  180 (440)
                      +++.-+.|+||||+|||++|..++..+...    ...+++++..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  108 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD  108 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence            445679999999999999976666555442    2356777643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.12  E-value=0.00035  Score=63.68  Aligned_cols=37  Identities=35%  Similarity=0.446  Sum_probs=29.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++|.+++|.||+||||||| ++++.+...+  .+.|++..
T Consensus         4 ~~~~~i~i~G~~GsGKSTl-~~~l~~~~~~--~i~~v~~d   40 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTL-AQALARTLGE--RVALLPMD   40 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHH-HHHHHHHHGG--GEEEEEGG
T ss_pred             CCcEEEEEECCCCCCHHHH-HHHHHHHhCC--CeEEEecC
Confidence            5789999999999999999 8888887754  35555543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.10  E-value=0.0017  Score=63.18  Aligned_cols=90  Identities=24%  Similarity=0.282  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc--cccceeec---CCCCHHHHHH-HHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV--DVENLIVC---QPDNGEMALE-IADR  215 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv--~~~~l~i~---~~~~~ee~l~-~i~~  215 (440)
                      +|+++.|+|++|+||||++..++..+...++.+++++.... .......+..  ...++.+.   ...+..++.. .+..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~-~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~  175 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK  175 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS-CHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc-cHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            68999999999999999987777776666778888876532 2211111110  01122222   1233444432 2333


Q ss_pred             HHhcCCcceEEEeccccc
Q 013567          216 MCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       216 l~~~~~~~lvVIDsl~~l  233 (440)
                      +. ..+.++|+||....+
T Consensus       176 ~~-~~~~D~viiDtpp~~  192 (295)
T 1ls1_A          176 AR-LEARDLILVDTAGRL  192 (295)
T ss_dssp             HH-HHTCCEEEEECCCCS
T ss_pred             HH-hCCCCEEEEeCCCCc
Confidence            22 236899999987443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.09  E-value=0.0024  Score=65.55  Aligned_cols=39  Identities=23%  Similarity=0.139  Sum_probs=28.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEH  181 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~  181 (440)
                      +..+.|+||||+|||||+..++..+...  +..++|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~  170 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK  170 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence            5679999999999999955554444333  67788887653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.09  E-value=0.0073  Score=61.97  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh------hhhhhcccccceeecCC---CCHHHHHH-
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS------YSKALGVDVENLIVCQP---DNGEMALE-  211 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~~~---~~~ee~l~-  211 (440)
                      ..++.++|++|+||||++.+++..+... +.+++.++........      +....|+     .++..   .+..+++. 
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l-----~v~~~~~~~dp~~i~~~  174 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV-----DFFPSDVGQKPVDIVNA  174 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC-----EECCCCSSSCHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe-----eEEeCCCCCCHHHHHHH
Confidence            4689999999999999999999999888 8999999986422211      1222332     23222   23444432 


Q ss_pred             HHHHHHhcCCcceEEEeccccc
Q 013567          212 IADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       212 ~i~~l~~~~~~~lvVIDsl~~l  233 (440)
                      .+..+ +..+.++++||....+
T Consensus       175 ~l~~~-~~~~~D~VIIDTpG~l  195 (433)
T 2xxa_A          175 ALKEA-KLKFYDVLLVDTAGRL  195 (433)
T ss_dssp             HHHHH-HHTTCSEEEEECCCCC
T ss_pred             HHHHH-HhCCCCEEEEECCCcc
Confidence            23332 2346899999996543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.09  E-value=0.00045  Score=62.79  Aligned_cols=39  Identities=28%  Similarity=0.431  Sum_probs=29.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E  180 (440)
                      ++|+++.|.|++||||||+ .+.+++... .+..++|+++.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl-~~~La~~l~~~G~~~~~~d~d   62 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTL-ACALNQMLYQKGKLCYILDGD   62 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHH-HHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCeEEEEECCCCCCHHHH-HHHHHHHHHhcCceEEEecCc
Confidence            6899999999999999999 555555544 34444588865

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.07  E-value=0.00036  Score=62.46  Aligned_cols=29  Identities=10%  Similarity=0.314  Sum_probs=23.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      |-.+|++++|+||+||||||| ++.+.+..
T Consensus         1 ~~~~g~~i~i~GpsGsGKSTL-~~~L~~~~   29 (180)
T 1kgd_A            1 GSHMRKTLVLLGAHGVGRRHI-KNTLITKH   29 (180)
T ss_dssp             --CCCCEEEEECCTTSSHHHH-HHHHHHHC
T ss_pred             CCCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence            456899999999999999999 67776654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.06  E-value=0.0064  Score=63.57  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             HHHHHHhcC---CC----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccc
Q 013567          130 LTLDLALGG---GL----PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDV  195 (440)
Q Consensus       130 ~~LD~~LgG---Gi----~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~  195 (440)
                      ..|..++++   ++    .+..++.|+|++|+||||++.+++..+.+.+..++.++..- ..+.       +..+.++++
T Consensus        81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~-~r~aa~~qL~~~~~~~~i~v  159 (504)
T 2j37_W           81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT-FRAGAFDQLKQNATKARIPF  159 (504)
T ss_dssp             HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC-SSSHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc-cchhHHHHHHHHhhccCceE
Confidence            346666754   34    23558999999999999999999988887788899988642 2211       122233321


Q ss_pred             cceeecCCCCHHHHH-HHHHHHHhcCCcceEEEecccccC
Q 013567          196 ENLIVCQPDNGEMAL-EIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       196 ~~l~i~~~~~~ee~l-~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      -.  .....+..++. ..+..+ ...+.++++||....+.
T Consensus       160 ~~--~~~~~dp~~i~~~al~~~-~~~~~DvvIIDTpG~~~  196 (504)
T 2j37_W          160 YG--SYTEMDPVIIASEGVEKF-KNENFEIIIVDTSGRHK  196 (504)
T ss_dssp             EE--CCCCSCHHHHHHHHHHHH-HHTTCCEEEEEECCCCT
T ss_pred             Ec--cCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCcc
Confidence            00  01112233332 223332 23567899999876653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.06  E-value=0.00026  Score=73.74  Aligned_cols=42  Identities=10%  Similarity=0.120  Sum_probs=37.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      -+++ ++++|.|||||||||| ++++.++..+..|.+++++...
T Consensus        26 ~i~~-e~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~   67 (483)
T 3euj_A           26 DFDE-LVTTLSGGNGAGKSTT-MAGFVTALIPDLTLLNFRNTTE   67 (483)
T ss_dssp             ECCS-SEEEEECCTTSSHHHH-HHHHHHHHCCCTTTCCCCCTTS
T ss_pred             EEcc-ceEEEECCCCCcHHHH-HHHHhcCCCCCCCEEEECCEEc
Confidence            4678 9999999999999999 9999999999888888887654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.05  E-value=0.0012  Score=66.84  Aligned_cols=106  Identities=23%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChh--hhhhhcccccce
Q 013567          123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPS--YSKALGVDVENL  198 (440)
Q Consensus       123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~--~a~~lGv~~~~l  198 (440)
                      +.+.||+..+|-++  =+.+|+-+.|+||+|+|||||+..++..+.+.  +-.|+|+---+..+..  +.+.+    .-.
T Consensus       156 ~~~~tGiraID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~----~~~  229 (422)
T 3ice_A          156 STEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV----KGE  229 (422)
T ss_dssp             CTTHHHHHHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC----SSE
T ss_pred             Ccccccceeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh----CeE
Confidence            46889999999987  67789999999999999999955544444332  3346665322211111  12222    112


Q ss_pred             eec-CCC-CH-------HHHHHHHHHHHhcCCcceEEEecccccC
Q 013567          199 IVC-QPD-NG-------EMALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       199 ~i~-~~~-~~-------ee~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      .+. ..+ ..       +..+..++.+...+.--++++|+++.+.
T Consensus       230 vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A  274 (422)
T 3ice_A          230 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA  274 (422)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHH
Confidence            222 211 11       2233445555555555577889988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.05  E-value=0.00071  Score=63.63  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=27.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|  +.|+||||+||||| ++.+++...  .+.+++++
T Consensus        47 ~~~~g--~ll~G~~G~GKTtl-~~~i~~~~~--~~~i~~~~   82 (254)
T 1ixz_A           47 RIPKG--VLLVGPPGVGKTHL-ARAVAGEAR--VPFITASG   82 (254)
T ss_dssp             CCCSE--EEEECCTTSSHHHH-HHHHHHHTT--CCEEEEEH
T ss_pred             CCCCe--EEEECCCCCCHHHH-HHHHHHHhC--CCEEEeeH
Confidence            45666  99999999999999 666666653  56666654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.04  E-value=0.00028  Score=64.35  Aligned_cols=29  Identities=31%  Similarity=0.501  Sum_probs=22.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +++|++++|+||||+||||| ++++.+...
T Consensus         1 m~~g~~i~lvGpsGaGKSTL-l~~L~~~~~   29 (198)
T 1lvg_A            1 MAGPRPVVLSGPSGAGKSTL-LKKLFQEHS   29 (198)
T ss_dssp             ----CCEEEECCTTSSHHHH-HHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHH-HHHHHhhCc
Confidence            35799999999999999999 888888763

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.02  E-value=0.0015  Score=72.09  Aligned_cols=122  Identities=25%  Similarity=0.348  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -|+.+-+=++|+||||+|||+||-.++.. +  +...+++++.+...    +.            ....+..+..+-...
T Consensus       233 ~g~~~p~GILL~GPPGTGKT~LAraiA~e-l--g~~~~~v~~~~l~s----k~------------~gese~~lr~lF~~A  293 (806)
T 3cf2_A          233 IGVKPPRGILLYGPPGTGKTLIARAVANE-T--GAFFFLINGPEIMS----KL------------AGESESNLRKAFEEA  293 (806)
T ss_dssp             CCCCCCCEEEEECCTTSCHHHHHHHHHTT-T--TCEEEEEEHHHHHS----SC------------TTHHHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEECCCCCCHHHHHHHHHHH-h--CCeEEEEEhHHhhc----cc------------chHHHHHHHHHHHHH
Confidence            47777788999999999999996544432 2  33455554321100    00            011222222222223


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +...+.+++||.+-.+.+..+-..  ++    ...+.+.+.+..+..+....++.||.++...+.+.
T Consensus       294 ~~~~PsIIfIDEiDal~~~r~~~~--~~----~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD  354 (806)
T 3cf2_A          294 EKNAPAIIFIDELDAIAPKREKTH--GE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID  354 (806)
T ss_dssp             TTSCSEEEEEESGGGTCCTTTTCC--CT----THHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred             HHcCCeEEEEehhcccccccCCCC--Ch----HHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence            456788999999999986433211  11    12344556665555555567788888877655543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0052  Score=60.48  Aligned_cols=98  Identities=16%  Similarity=0.059  Sum_probs=55.6

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCcEEEEcCCCCCChh-----hhhhh-ccccc
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGNAMLVDAEHAFDPS-----YSKAL-GVDVE  196 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-------~~~vv~id~E~~~~~~-----~a~~l-Gv~~~  196 (440)
                      ..|...+.+|  ++..+.|+||||+|||+++..++..+...       .-..+++++....++.     +++.+ |.   
T Consensus        34 ~~L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~---  108 (318)
T 3te6_A           34 LPIYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE---  108 (318)
T ss_dssp             HHHHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC---
T ss_pred             HHHHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC---
Confidence            3455556454  56678999999999999977777766532       2357888876544432     23333 21   


Q ss_pred             ceeecCCCCHHHHHHHHHHHH-hcCCcceEEEecccccC
Q 013567          197 NLIVCQPDNGEMALEIADRMC-RSGAIDLICVDSVSALT  234 (440)
Q Consensus       197 ~l~i~~~~~~ee~l~~i~~l~-~~~~~~lvVIDsl~~l~  234 (440)
                      +  +......+.+......+. .....-++++|.+..+.
T Consensus       109 ~--~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~  145 (318)
T 3te6_A          109 N--LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL  145 (318)
T ss_dssp             C----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred             C--CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence            1  111122333333333321 23456688999988775

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.98  E-value=0.0013  Score=59.70  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ..+.|+||+|+|||||+..++....
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4899999999999999766655443

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.98  E-value=0.0022  Score=58.77  Aligned_cols=92  Identities=21%  Similarity=0.332  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC-CCh---hhhhhhcccccce---eecCCCC-------HH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA-FDP---SYSKALGVDVENL---IVCQPDN-------GE  207 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~-~~~---~~a~~lGv~~~~l---~i~~~~~-------~e  207 (440)
                      +| .+.|++++|.||||.|+-++..++..|.+|+++.+-.. ...   ...+++++.+...   +......       ..
T Consensus        28 ~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~  106 (196)
T 1g5t_A           28 RG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM  106 (196)
T ss_dssp             CC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred             Cc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence            44 67788889999999999999999999999999965432 111   2445554332211   1111111       12


Q ss_pred             HHHHHHHHHHhcCCcceEEEecccccC
Q 013567          208 MALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       208 e~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      ..+..+.+.+.++..++||+|.+....
T Consensus       107 ~~l~~a~~~l~~~~yDlvILDEi~~al  133 (196)
T 1g5t_A          107 AVWQHGKRMLADPLLDMVVLDELTYMV  133 (196)
T ss_dssp             HHHHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCccc
Confidence            234455666667889999999997654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.97  E-value=0.00037  Score=73.16  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +++|.+++|+||+||||||| ++++.+...++.+.+.+...
T Consensus       257 v~~g~~i~I~GptGSGKTTl-L~aL~~~i~~~~giitied~  296 (511)
T 2oap_1          257 IEHKFSAIVVGETASGKTTT-LNAIMMFIPPDAKVVSIEDT  296 (511)
T ss_dssp             HHTTCCEEEEESTTSSHHHH-HHHHGGGSCTTCCEEEEESS
T ss_pred             HhCCCEEEEECCCCCCHHHH-HHHHHhhCCCCCCEEEEcCc
Confidence            36789999999999999999 89999999888898888654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.95  E-value=0.0004  Score=62.20  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=26.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      |+++.|.|||||||||| ++.+.+   +..+.++++++
T Consensus         2 g~ii~l~G~~GaGKSTl-~~~L~~---~~~g~~~i~~d   35 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTT-CKRLAA---QLDNSAYIEGD   35 (189)
T ss_dssp             EEEEEEECSTTSSHHHH-HHHHHH---HSSSEEEEEHH
T ss_pred             CeEEEEECCCCCcHHHH-HHHHhc---ccCCeEEEccc
Confidence            67999999999999999 566554   44567888764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.95  E-value=0.00032  Score=70.29  Aligned_cols=46  Identities=33%  Similarity=0.407  Sum_probs=34.7

Q ss_pred             cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEc
Q 013567          127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVD  178 (440)
Q Consensus       127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id  178 (440)
                      .|+..|...+     +|++++|+||||+||||| ++++.+... +..+.+.+.
T Consensus       204 ~gl~~L~~~~-----~G~~~~lvG~sG~GKSTL-ln~L~g~~~~~~~G~I~~~  250 (358)
T 2rcn_A          204 DGLKPLEEAL-----TGRISIFAGQSGVGKSSL-LNALLGLQNEILTNDVSNV  250 (358)
T ss_dssp             BTHHHHHHHH-----TTSEEEEECCTTSSHHHH-HHHHHCCSSCCCCC-----
T ss_pred             cCHHHHHHhc-----CCCEEEEECCCCccHHHH-HHHHhccccccccCCcccc
Confidence            4677777765     678999999999999999 899988877 777766654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.93  E-value=0.0027  Score=63.40  Aligned_cols=89  Identities=17%  Similarity=0.106  Sum_probs=53.7

Q ss_pred             CCCEEEE--EcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHH
Q 013567          142 KGRIVEI--FGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       142 ~G~ii~I--~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      .+..+.|  +||+|+|||||+..++..+...      +..++|++........     +.+.+|....    ....+..+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~  124 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALD  124 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHH
Confidence            4567888  9999999999977766655432      4567888864333321     2333443211    01223455


Q ss_pred             HHHHHHHHHh-cCCcceEEEecccccC
Q 013567          209 ALEIADRMCR-SGAIDLICVDSVSALT  234 (440)
Q Consensus       209 ~l~~i~~l~~-~~~~~lvVIDsl~~l~  234 (440)
                      +...+...+. ....-+++||.+..+.
T Consensus       125 ~~~~l~~~l~~~~~~~llvlDe~~~l~  151 (412)
T 1w5s_A          125 ILKALVDNLYVENHYLLVILDEFQSML  151 (412)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence            5555444443 3456789999988764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.92  E-value=0.0035  Score=56.35  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=55.8

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567          145 IVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       145 ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      ++.|+ +..|+||||++.+++..+.+.+.+++++|......  ....++....++.+..... +.+...++.+.  ...+
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD   77 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD   77 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence            56666 56899999999999999999999999999863322  2222333334444443333 44555555542  3589


Q ss_pred             eEEEeccccc
Q 013567          224 LICVDSVSAL  233 (440)
Q Consensus       224 lvVIDsl~~l  233 (440)
                      +|+||.-..+
T Consensus        78 ~viiD~~~~~   87 (206)
T 4dzz_A           78 FAIVDGAGSL   87 (206)
T ss_dssp             EEEEECCSSS
T ss_pred             EEEEECCCCC
Confidence            9999986544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.91  E-value=0.0006  Score=60.20  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF  183 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~  183 (440)
                      .+|.++.|.|+|||||||+ .+.+.+..    +.+++++....
T Consensus         6 ~~g~~i~l~G~~GsGKSTl-~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAV-ASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHH-HHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHH-HHHHHHhh----CcEEEeCcccc
Confidence            4688999999999999999 56665544    56778775443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.91  E-value=0.00094  Score=59.29  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E  180 (440)
                      ++|.++.|.|++||||||+ .+.+.....+ +..+++++.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~-~~~L~~~l~~~g~~~i~~d~~   42 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTV-SMALEEYLVCHGIPCYTLDGD   42 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHH-HHHHHHHHhhCCCcEEEECCh
Confidence            6899999999999999999 5666555443 4457777643

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.90  E-value=0.00084  Score=69.07  Aligned_cols=80  Identities=21%  Similarity=0.293  Sum_probs=47.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      |+..+..-+.|+||||+|||+||..++..+  .+...++++.......    ..|.        .......++..+    
T Consensus       162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~----~~g~--------~~~~~~~~f~~a----  223 (444)
T 2zan_A          162 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----WLGE--------SEKLVKNLFQLA----  223 (444)
T ss_dssp             GGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC---------------------CCCTHHHHHHHH----
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh----hcch--------HHHHHHHHHHHH----
Confidence            456677889999999999999966555543  2345666665432211    1111        112233333333    


Q ss_pred             hcCCcceEEEecccccCC
Q 013567          218 RSGAIDLICVDSVSALTP  235 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~  235 (440)
                      +...+.+|+||.+..+.+
T Consensus       224 ~~~~~~vl~iDEid~l~~  241 (444)
T 2zan_A          224 RENKPSIIFIDEIDSLCG  241 (444)
T ss_dssp             HHSCSEEEEESCTTTTCC
T ss_pred             HHcCCeEEEEechHhhcc
Confidence            235678999999998865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.89  E-value=0.0006  Score=61.57  Aligned_cols=30  Identities=30%  Similarity=0.376  Sum_probs=24.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL  170 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~  170 (440)
                      +++|.+++|.|||||||||+ ++++.+...+
T Consensus         3 i~~g~~i~l~G~~GsGKSTl-~~~L~~~~~~   32 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTV-RKRIFEDPST   32 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHH-HHHHHHCTTC
T ss_pred             CCCCCEEEEECCCCCCHHHH-HHHHHHhhCC
Confidence            57899999999999999999 6777776543

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.87  E-value=0.0094  Score=57.22  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      .|...+..|-.+.  +.|+||+|+|||+++..++..+...+  ..+++++....                     ...+.
T Consensus        32 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~   88 (323)
T 1sxj_B           32 RLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD---------------------RGIDV   88 (323)
T ss_dssp             HHHHHHHSCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC---------------------CSHHH
T ss_pred             HHHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc---------------------cChHH
Confidence            4455554443333  89999999999999777776654322  23455543221                     12233


Q ss_pred             HHHHHHHHHh------cCCcceEEEecccccC
Q 013567          209 ALEIADRMCR------SGAIDLICVDSVSALT  234 (440)
Q Consensus       209 ~l~~i~~l~~------~~~~~lvVIDsl~~l~  234 (440)
                      +.+.+..+..      .+...+++||.+..+.
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~  120 (323)
T 1sxj_B           89 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMT  120 (323)
T ss_dssp             HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred             HHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence            3333343321      2247799999987765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.86  E-value=0.00059  Score=64.15  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=24.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      -+++|.+++|.||+||||||| ++++.+..
T Consensus        21 ~i~~g~iigI~G~~GsGKSTl-~k~L~~~l   49 (245)
T 2jeo_A           21 QSMRPFLIGVSGGTASGKSTV-CEKIMELL   49 (245)
T ss_dssp             --CCSEEEEEECSTTSSHHHH-HHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHH-HHHHHHHh
Confidence            577899999999999999999 77777765

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.85  E-value=0.00069  Score=69.30  Aligned_cols=46  Identities=22%  Similarity=0.229  Sum_probs=36.0

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .|+.++   ..+|.+++|+||+||||||| ++++.+...+..+.+++...
T Consensus       158 ~L~~l~---~~~ggii~I~GpnGSGKTTl-L~allg~l~~~~g~I~~~ed  203 (418)
T 1p9r_A          158 NFRRLI---KRPHGIILVTGPTGSGKSTT-LYAGLQELNSSERNILTVED  203 (418)
T ss_dssp             HHHHHH---TSSSEEEEEECSTTSCHHHH-HHHHHHHHCCTTSCEEEEES
T ss_pred             HHHHHH---HhcCCeEEEECCCCCCHHHH-HHHHHhhcCCCCCEEEEecc
Confidence            455554   37899999999999999999 88888888776665655443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.84  E-value=0.0014  Score=64.98  Aligned_cols=87  Identities=18%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCcEEEEcCCCCC-Chh-----hhhhh-cccccceeecCCCCHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKL--------GGNAMLVDAEHAF-DPS-----YSKAL-GVDVENLIVCQPDNGE  207 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~--------~~~vv~id~E~~~-~~~-----~a~~l-Gv~~~~l~i~~~~~~e  207 (440)
                      +..+.|+||+|+|||+|+..++..+...        +..++|++..... .+.     +...+ |....    ....+..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~  120 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP----KHGINLG  120 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC----SSSSCTH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC----CCCCCHH
Confidence            4589999999999999977776665443        6778888754322 221     12222 22111    1122334


Q ss_pred             HHHHHHHHHHhcCCcceEEEecccccC
Q 013567          208 MALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       208 e~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      +++..+...+...+. +++||.+..+.
T Consensus       121 ~~~~~l~~~l~~~~~-vlilDEi~~l~  146 (384)
T 2qby_B          121 EYIDKIKNGTRNIRA-IIYLDEVDTLV  146 (384)
T ss_dssp             HHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred             HHHHHHHHHhccCCC-EEEEECHHHhc
Confidence            555555555544444 99999988764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.83  E-value=0.0013  Score=62.93  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=27.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+++|  +.|+||||+||||| ++.+++...  .+.+++++
T Consensus        71 ~~~~g--vll~Gp~GtGKTtl-~~~i~~~~~--~~~i~~~~  106 (278)
T 1iy2_A           71 RIPKG--VLLVGPPGVGKTHL-ARAVAGEAR--VPFITASG  106 (278)
T ss_dssp             CCCCE--EEEECCTTSSHHHH-HHHHHHHTT--CCEEEEEH
T ss_pred             CCCCe--EEEECCCcChHHHH-HHHHHHHcC--CCEEEecH
Confidence            45666  89999999999999 677776653  56666654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.83  E-value=0.0047  Score=64.65  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhh-hhhhcccccceeecCCCCHHHHHHHHH-HHHh
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSY-SKALGVDVENLIVCQPDNGEMALEIAD-RMCR  218 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~-a~~lGv~~~~l~i~~~~~~ee~l~~i~-~l~~  218 (440)
                      ++...+.|+||||+||||+|..++..+   +..+++++......... ...+.-......+.      ..+..+. ....
T Consensus        75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~  145 (516)
T 1sxj_A           75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVV------GYFKHNEEAQNL  145 (516)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCST------TTTTC----CCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHH------HHHhhhhhhhhc
Confidence            456799999999999999966555444   56778887765443321 11111000000000      0000000 0112


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                      .....+++||.+..+... .        +         ..+..|..++.+.+++||+++...
T Consensus       146 ~~~~~vliIDEid~l~~~-~--------~---------~~l~~L~~~l~~~~~~iIli~~~~  189 (516)
T 1sxj_A          146 NGKHFVIIMDEVDGMSGG-D--------R---------GGVGQLAQFCRKTSTPLILICNER  189 (516)
T ss_dssp             STTSEEEEECSGGGCCTT-S--------T---------THHHHHHHHHHHCSSCEEEEESCT
T ss_pred             cCCCeEEEEECCCccchh-h--------H---------HHHHHHHHHHHhcCCCEEEEEcCC
Confidence            245679999999888631 0        0         112334455566788888887653

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.82  E-value=0.0083  Score=60.21  Aligned_cols=76  Identities=24%  Similarity=0.260  Sum_probs=44.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      .++.-+.|+||||+|||+||..++..   .+...++++........    .           ... +..+..+-......
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~----~-----------g~~-~~~~~~~~~~a~~~  206 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKY----V-----------GEG-EKLVRALFAVAREL  206 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC----------------------C-HHHHHHHHHHHHHS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhccc----c-----------chH-HHHHHHHHHHHHhc
Confidence            45678999999999999996555333   34566777664322110    0           011 12222222223344


Q ss_pred             CcceEEEecccccCC
Q 013567          221 AIDLICVDSVSALTP  235 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~  235 (440)
                      .+.+++||.+..+..
T Consensus       207 ~~~il~iDEid~l~~  221 (389)
T 3vfd_A          207 QPSIIFIDQVDSLLC  221 (389)
T ss_dssp             SSEEEEEETGGGGC-
T ss_pred             CCeEEEEECchhhcc
Confidence            678999999998864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.81  E-value=0.0059  Score=60.70  Aligned_cols=76  Identities=18%  Similarity=0.270  Sum_probs=45.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      .+..-+.|+||||+|||+||..++...   +...++++........                ....+..+..+-......
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~~----------------~g~~~~~~~~~~~~a~~~  175 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSKW----------------VGEGEKMVRALFAVARCQ  175 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCSS----------------TTHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhccc----------------cchHHHHHHHHHHHHHhc
Confidence            456689999999999999965554432   4556666654221110                001122222222223345


Q ss_pred             CcceEEEecccccCC
Q 013567          221 AIDLICVDSVSALTP  235 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~  235 (440)
                      ...+++||.+..+.+
T Consensus       176 ~~~vl~iDEid~l~~  190 (357)
T 3d8b_A          176 QPAVIFIDEIDSLLS  190 (357)
T ss_dssp             CSEEEEEETHHHHTB
T ss_pred             CCeEEEEeCchhhhc
Confidence            678999999988864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.81  E-value=0.00037  Score=64.78  Aligned_cols=28  Identities=25%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHH-HHh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIA-EVQ  168 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~-~~~  168 (440)
                      +++|++++|+|||||||||| ++++. +..
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl-~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTV-ANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CH-HHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHH-HHHHHhcCC
Confidence            57899999999999999999 77777 765

>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A

Probab=96.77  E-value=0.0006  Score=68.04  Aligned_cols=42  Identities=31%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             cccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHH----HHHHHH
Q 013567          123 ETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLAL----HAIAEV  167 (440)
Q Consensus       123 ~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL----~li~~~  167 (440)
                      ..++||+++||.+|| ||+|.|.++.|.|+   |||+++.    +++++-
T Consensus        19 ~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~~Ll~~f~aeG   65 (361)
T 4a8j_A           19 PTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHSILGKLFAAQG   65 (361)
T ss_dssp             EEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHHHHHHHHHHHH
T ss_pred             eeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHHHHHHHHHHHh
Confidence            578999999999999 99999999999998   8999984    555533

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.76  E-value=0.0035  Score=60.88  Aligned_cols=87  Identities=11%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC------Ch-h----hhhhhcc------------ccccee
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF------DP-S----YSKALGV------------DVENLI  199 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~------~~-~----~a~~lGv------------~~~~l~  199 (440)
                      |.++.|+|++|+|||||+.+++...     +++|++.....      .. .    +.+.++-            ......
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  105 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT  105 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence            3799999999999999976666543     38898865321      11 1    1111110            000000


Q ss_pred             e-cCCCCHHHHHHHHHHHHhcCCcceEEEecccccC
Q 013567          200 V-CQPDNGEMALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       200 i-~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      + .......+++..+..+....+.-+++||.++.+.
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~  141 (350)
T 2qen_A          106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR  141 (350)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred             eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence            0 0123556666666555443236689999998775

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.75  E-value=0.0015  Score=58.34  Aligned_cols=48  Identities=31%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .||.-.  =.++|.++.|.|++||||||++-.++..+...+..+.+++++
T Consensus         3 ~~~~~~--~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A            3 ALTTYK--CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             -----C--CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             cccccc--ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            355533  235789999999999999999666555555556667788643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.74  E-value=0.0037  Score=65.19  Aligned_cols=119  Identities=22%  Similarity=0.352  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      |+++..-+.|+||||+|||++|..++.. .  +...++++.......    .+|           .....+...+.. ..
T Consensus       234 g~~~~~~vLL~GppGtGKT~lAraia~~-~--~~~fv~vn~~~l~~~----~~g-----------~~~~~~~~~f~~-A~  294 (489)
T 3hu3_A          234 GVKPPRGILLYGPPGTGKTLIARAVANE-T--GAFFFLINGPEIMSK----LAG-----------ESESNLRKAFEE-AE  294 (489)
T ss_dssp             TCCCCCEEEEECSTTSSHHHHHHHHHHH-C--SSEEEEEEHHHHHTS----CTT-----------HHHHHHHHHHHH-HH
T ss_pred             CCCCCCcEEEECcCCCCHHHHHHHHHHH-h--CCCEEEEEchHhhhh----hcc-----------hhHHHHHHHHHH-HH
Confidence            5677778999999999999996554333 2  456666664221100    000           001111122222 23


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK  282 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~  282 (440)
                      ...+.+++||.+..+.+...-..  ++    ...+.+...++.|...-...++.||.+++..+.
T Consensus       295 ~~~p~iLfLDEId~l~~~~~~~~--~~----~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~  352 (489)
T 3hu3_A          295 KNAPAIIFIDELDAIAPKREKTH--GE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS  352 (489)
T ss_dssp             HTCSEEEEEESHHHHCBCTTSCC--CH----HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred             hcCCcEEEecchhhhcccccccc--ch----HHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence            35678999999988875322111  11    112233444444443333455666666665443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.73  E-value=0.0079  Score=59.29  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=30.2

Q ss_pred             cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          137 GGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       137 gGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ..|..+|..+.|+||||+|||++|..++..+. .....+.++.
T Consensus        64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~  105 (368)
T 3uk6_A           64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAG  105 (368)
T ss_dssp             HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEG
T ss_pred             HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccc
Confidence            36777789999999999999999666555543 3335555543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.72  E-value=0.0024  Score=54.91  Aligned_cols=38  Identities=16%  Similarity=0.081  Sum_probs=24.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .+.-+.|+||||+|||++|-.+.......+...+ ++..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~   60 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL   60 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence            3445899999999999996544433333344555 5544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.72  E-value=0.002  Score=58.52  Aligned_cols=40  Identities=23%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~  179 (440)
                      -.++|.+++|.|++||||||| ++.+.+...+ +..+++++.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl-~~~l~~~~~~~~~~v~~~~~   58 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTL-ANQLSQTLREQGISVCVFHM   58 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHH-HHHHHHHHHHTTCCEEEEEG
T ss_pred             ccCCCeEEEEECCCCCCHHHH-HHHHHHHHhhcCCeEEEecc
Confidence            356789999999999999999 5666666544 445555543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.69  E-value=0.001  Score=64.95  Aligned_cols=49  Identities=24%  Similarity=0.341  Sum_probs=34.9

Q ss_pred             cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE---cCCCC
Q 013567          127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV---DAEHA  182 (440)
Q Consensus       127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i---d~E~~  182 (440)
                      .|++.|=..+     .|+++.|.||||+||||| ++++. ...+..|.+.+   .+.+.
T Consensus       154 ~gi~~L~~~l-----~G~i~~l~G~sG~GKSTL-ln~l~-~~~~~~G~i~~~~~~G~~~  205 (302)
T 2yv5_A          154 EGIDELVDYL-----EGFICILAGPSGVGKSSI-LSRLT-GEELRTQEVSEKTERGRHT  205 (302)
T ss_dssp             TTHHHHHHHT-----TTCEEEEECSTTSSHHHH-HHHHH-SCCCCCSCC---------C
T ss_pred             CCHHHHHhhc-----cCcEEEEECCCCCCHHHH-HHHHH-HhhCcccccccccCCCCCc
Confidence            4566665554     588999999999999999 88888 88788888887   55544

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=96.69  E-value=0.0042  Score=64.69  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--------cCCcEEEEcCCCCCChh--hhhh-
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK--------LGGNAMLVDAEHAFDPS--YSKA-  190 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--------~~~~vv~id~E~~~~~~--~a~~-  190 (440)
                      .+.+.||+..+|.++  =+-+|+-..|+|++|+|||+||+..+.+...        .+.-|+|.---+.....  +.+. 
T Consensus       143 ~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~  220 (510)
T 2ck3_A          143 REPMQTGIKAVDSLV--PIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL  220 (510)
T ss_dssp             CSBCCCSCHHHHHHS--CCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHH
T ss_pred             Cccccccceeecccc--ccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHH
Confidence            356889999999987  4558999999999999999999988888776        44457776433322221  1111 


Q ss_pred             --hcccccceee-cCCCC--HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567          191 --LGVDVENLIV-CQPDN--GEM------ALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       191 --lGv~~~~l~i-~~~~~--~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                        -|..-.-+.+ ...+.  ...      .+.+++.+...+.--++++|+++.+.
T Consensus       221 ~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A  275 (510)
T 2ck3_A          221 TDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA  275 (510)
T ss_dssp             HHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred             HhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Confidence              1211111222 22221  222      23345555444445577899988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.62  E-value=0.0011  Score=64.53  Aligned_cols=50  Identities=32%  Similarity=0.371  Sum_probs=32.6

Q ss_pred             cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE---cCCCC
Q 013567          127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV---DAEHA  182 (440)
Q Consensus       127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i---d~E~~  182 (440)
                      .|+..|=..+     .|+++.|.||||+||||| ++++.+...+..|.+.+   .+.+.
T Consensus       158 ~gv~~lf~~l-----~geiv~l~G~sG~GKSTl-l~~l~g~~~~~~G~i~~~~~~g~~~  210 (301)
T 1u0l_A          158 MGIEELKEYL-----KGKISTMAGLSGVGKSSL-LNAINPGLKLRVSEVSEKLQRGRHT  210 (301)
T ss_dssp             TTHHHHHHHH-----SSSEEEEECSTTSSHHHH-HHHHSTTCCCC-------------C
T ss_pred             cCHHHHHHHh-----cCCeEEEECCCCCcHHHH-HHHhcccccccccceecccCCCCCc
Confidence            3555554444     578999999999999999 99999999888888888   55543

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=96.62  E-value=0.0028  Score=65.92  Aligned_cols=111  Identities=18%  Similarity=0.248  Sum_probs=67.8

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhh---ccccc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKAL---GVDVE  196 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~l---Gv~~~  196 (440)
                      .+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+.....  +.+.+   |..-.
T Consensus       156 ~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~r  233 (515)
T 2r9v_A          156 DTPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEY  233 (515)
T ss_dssp             CSEECCSCHHHHHHS--CEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGG
T ss_pred             CcchhcCcccccccc--ccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcce
Confidence            356789999999987  455899999999999999999998888877655456776533322221  11111   11111


Q ss_pred             ceee-cCCCC--HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567          197 NLIV-CQPDN--GEM------ALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       197 ~l~i-~~~~~--~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      -+.+ ...+.  ...      .+.+++.+...+.--++++|+++.+.
T Consensus       234 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A  280 (515)
T 2r9v_A          234 TTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHA  280 (515)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHH
Confidence            1222 22221  222      23345555444445577899988664

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=96.62  E-value=0.0032  Score=65.40  Aligned_cols=111  Identities=16%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhh---hccccc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKA---LGVDVE  196 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~---lGv~~~  196 (440)
                      .+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+.....  +.+.   -|..-.
T Consensus       143 ~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~  220 (502)
T 2qe7_A          143 HEPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDY  220 (502)
T ss_dssp             CSBCCCSCHHHHHSS--CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTT
T ss_pred             CCccccceeeccccc--ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcce
Confidence            456799999999987  455899999999999999999998888877655456776533322221  1111   121111


Q ss_pred             ceee-cCCCC--HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567          197 NLIV-CQPDN--GEM------ALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       197 ~l~i-~~~~~--~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      -+.+ ...+.  ...      .+.+++.+...+.--++++|+++.+.
T Consensus       221 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A  267 (502)
T 2qe7_A          221 TIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQA  267 (502)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence            1222 22221  222      23345555444444577899988664

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.59  E-value=0.0013  Score=60.80  Aligned_cols=38  Identities=26%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +..|...+ .|+|+...+.|+||||+||||+|+.++..+
T Consensus        45 ~~~l~~~~-~~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           45 LGALKSFL-KGTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHH-HTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            66777777 679988889999999999999987776654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.58  E-value=0.0014  Score=60.10  Aligned_cols=27  Identities=26%  Similarity=0.457  Sum_probs=22.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ++|++++|.||||+||||| ++.+....
T Consensus         6 ~~g~~i~l~GpsGsGKsTl-~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTV-REAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHH-HHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHH-HHHHHhhC
Confidence            5799999999999999999 55565554

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.57  E-value=0.0075  Score=59.21  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +.|+||||+||||++..++..+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999955444443

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=96.57  E-value=0.04  Score=52.59  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          142 KGRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      +.+++.|+++ +|.||||++.+++..+++.+.+|++||....
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~  122 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR  122 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            4578999876 8999999999999999999999999998743

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.57  E-value=0.0039  Score=65.18  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=28.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      -+|+|  +.|+||||+||||| ++.+++..  +.+.+++++..
T Consensus        62 ~ip~G--vLL~GppGtGKTtL-araIa~~~--~~~~i~i~g~~   99 (499)
T 2dhr_A           62 RIPKG--VLLVGPPGVGKTHL-ARAVAGEA--RVPFITASGSD   99 (499)
T ss_dssp             CCCSE--EEEECSSSSSHHHH-HHHHHHHT--TCCEEEEEGGG
T ss_pred             CCCce--EEEECCCCCCHHHH-HHHHHHHh--CCCEEEEehhH
Confidence            45666  89999999999999 56666655  36778887653

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.57  E-value=0.0029  Score=65.50  Aligned_cols=55  Identities=29%  Similarity=0.437  Sum_probs=42.0

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEE
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLV  177 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~i  177 (440)
                      ..+.+.||+..+|.+.  -+-+|+.+.|+|++|+|||||+..++.+... .+.-++|.
T Consensus       131 ~~e~l~TGir~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~  186 (473)
T 1sky_E          131 EVEILETGIKVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA  186 (473)
T ss_dssp             SCCEECCSCHHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred             cCccccccchHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence            3456899999999986  4557889999999999999997666666553 33445554

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=96.56  E-value=0.0047  Score=64.14  Aligned_cols=112  Identities=20%  Similarity=0.294  Sum_probs=68.6

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhh---cccc
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKAL---GVDV  195 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~l---Gv~~  195 (440)
                      .-+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+....  .+.+.+   |..-
T Consensus       142 v~epl~TGikaID~l~--PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~  219 (513)
T 3oaa_A          142 VDQPVQTGYKAVDSMI--PIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALA  219 (513)
T ss_dssp             CCCBCCCSCHHHHHHS--CCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST
T ss_pred             cCcccccceeeecccc--ccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcCccc
Confidence            3457889999999987  45589999999999999999998888876555555777643322221  112222   2111


Q ss_pred             cceeec-CCC-C-HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567          196 ENLIVC-QPD-N-GEM------ALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       196 ~~l~i~-~~~-~-~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      .-+.+. ..+ . ...      .+.+++.+...+.--++++|+++.+.
T Consensus       220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A  267 (513)
T 3oaa_A          220 NTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQA  267 (513)
T ss_dssp             TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence            122222 221 1 222      23344555445555577899988664

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.55  E-value=0.00035  Score=71.35  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .+.+++|.||||+||||| ++++.+...+..+.+.+++.
T Consensus        68 ~~~~valvG~nGaGKSTL-ln~L~Gl~~p~~GsI~~~g~  105 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSF-INTLRGIGNEEEGAAKTGVV  105 (413)
T ss_dssp             CCEEEEEEECTTSSHHHH-HHHHHTCCTTSTTSCCCCC-
T ss_pred             CCeEEEEECCCCCcHHHH-HHHHhCCCCccCceEEECCe
Confidence            444999999999999999 99999988776666655543

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=96.54  E-value=0.046  Score=52.73  Aligned_cols=41  Identities=17%  Similarity=0.290  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          142 KGRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      +++++.|+++ +|.||||+|.+++..+++.+.+|++||....
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~  132 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR  132 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence            4578888775 8999999999999999998999999998754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.52  E-value=0.001  Score=61.95  Aligned_cols=38  Identities=29%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +..++|.++.|.|++||||||+ ++++.+.   + +.+.+..+
T Consensus        15 ~~~~~g~~i~i~G~~GsGKSTl-~~~L~~~---~-g~v~~~~~   52 (230)
T 2vp4_A           15 AEGTQPFTVLIEGNIGSGKTTY-LNHFEKY---K-NDICLLTE   52 (230)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHH-HHTTGGG---T-TTEEEECC
T ss_pred             CCCCCceEEEEECCCCCCHHHH-HHHHHhc---c-CCeEEEec
Confidence            3557899999999999999999 7777665   3 33445444

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.50  E-value=0.0019  Score=57.31  Aligned_cols=28  Identities=36%  Similarity=0.481  Sum_probs=23.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +.+| +++|+|||||||||| +.++..+..
T Consensus        24 ~~~g-~~~i~G~NGsGKStl-l~ai~~~l~   51 (182)
T 3kta_A           24 FSKG-FTAIVGANGSGKSNI-GDAILFVLG   51 (182)
T ss_dssp             CCSS-EEEEEECTTSSHHHH-HHHHHHHTT
T ss_pred             cCCC-cEEEECCCCCCHHHH-HHHHHHHHc
Confidence            4466 999999999999999 888877664

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.47  E-value=0.031  Score=54.15  Aligned_cols=66  Identities=18%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc----
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS----  219 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~----  219 (440)
                      .++.++||||+|||+++..++..+   +..+++++....                      ..+.+...+......    
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~----------------------~~~~i~~~~~~~~~~~~~~  103 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDC----------------------KIDFVRGPLTNFASAASFD  103 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTC----------------------CHHHHHTHHHHHHHBCCCS
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccccc----------------------CHHHHHHHHHHHHhhcccC
Confidence            478999999999999965554433   445666664321                      122222223332221    


Q ss_pred             CCcceEEEecccccC
Q 013567          220 GAIDLICVDSVSALT  234 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~  234 (440)
                      +..++++||.+..+.
T Consensus       104 ~~~~vliiDEi~~l~  118 (324)
T 3u61_B          104 GRQKVIVIDEFDRSG  118 (324)
T ss_dssp             SCEEEEEEESCCCGG
T ss_pred             CCCeEEEEECCcccC
Confidence            257899999998764

>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22

Probab=96.46  E-value=0.055  Score=45.42  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             CCEEEEE-cCCCCcHHHHHHHHHHHHhh--cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567          143 GRIVEIF-GPESSGKTTLALHAIAEVQK--LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS  219 (440)
Q Consensus       143 G~ii~I~-G~~GsGKTTLaL~li~~~~~--~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~  219 (440)
                      +.++++. -.+|.|-..|.+.++..+..  .++.++||.....+........|++++++.+.++.+..+.++.+++.++.
T Consensus         2 ~~l~Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs   81 (119)
T 1ofu_X            2 AAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL   81 (119)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CceEEEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc
Confidence            4467765 45788888887788877765  67889999887777777788899999999999999999999999999999


Q ss_pred             CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Q 013567          220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL  276 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~i  276 (440)
                      +....|+.. +..+.                     ...+|+|...+.+.+++.+++
T Consensus        82 g~~~aVl~w-l~~l~---------------------~~~~RRLqlAA~~g~~~~~l~  116 (119)
T 1ofu_X           82 GRSHTVVSW-LEPLS---------------------RAARKQLSRAAQLGQAQSLNI  116 (119)
T ss_dssp             TCEEEEEEC-CSSCC---------------------HHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCccEEEEC-CCcCC---------------------hHHHHHHHHHHHhCCCeEEEe
Confidence            999888864 22211                     123566666677777776664

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.46  E-value=0.0018  Score=57.61  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=23.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      |++++.++.|.|+|||||||++-.+...
T Consensus         1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            1 GMQTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CCSCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5678899999999999999996555543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.46  E-value=0.00098  Score=59.69  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~  181 (440)
                      +++.|+|++||||||| ++++.+...+.   .+.+.+++..
T Consensus         3 ~~v~IvG~SGsGKSTL-~~~L~~~~~~~g~~~G~I~~dg~~   42 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTL-ITRMMPILRERGLRVAVVKRHAHG   42 (171)
T ss_dssp             CEEEEEESCHHHHHHH-HHHHHHHHHHTTCCEEEEEC----
T ss_pred             eEEEEECCCCCCHHHH-HHHHHHHhhhcCCceEEEEEcCcc
Confidence            5799999999999999 78888887765   6788887664

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=96.45  E-value=0.003  Score=65.77  Aligned_cols=111  Identities=19%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhh---ccccc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKAL---GVDVE  196 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~l---Gv~~~  196 (440)
                      -+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+.....  +.+.+   |..-.
T Consensus       144 ~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~r  221 (507)
T 1fx0_A          144 YEPLQTGLIAIDAMI--PVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEY  221 (507)
T ss_dssp             CSBCCCSCTTTTTTS--CCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGS
T ss_pred             CCcccccceeccccc--ccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCcccc
Confidence            356789999999987  455899999999999999999998888887666567776533322221  11111   11111


Q ss_pred             ceee-cCCCC--------HHHHHHHHHHHHhcCCcceEEEecccccC
Q 013567          197 NLIV-CQPDN--------GEMALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       197 ~l~i-~~~~~--------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      -+.+ ...+.        ..-.+.+++.+...+.--++++|+++.+.
T Consensus       222 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A  268 (507)
T 1fx0_A          222 TIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA  268 (507)
T ss_dssp             EEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence            1222 21111        22344556655555555577899987653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.45  E-value=0.0043  Score=61.75  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEc
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVD  178 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id  178 (440)
                      +.+.++.|+|+||+||||| ++.+.+...+. +.+..+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTL-ln~L~~~~~~~~~~v~V~~  109 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTF-IEYFGKMLTERGHKLSVLA  109 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEEE
T ss_pred             cCceEEEEEcCCCCCHHHH-HHHHHHHhhhcCCeEEEEe
Confidence            4577999999999999999 67776665544 4444443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.43  E-value=0.0018  Score=56.75  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .|.++.|.|+|||||||+ .+++++...    ..|+++
T Consensus         3 ~~~~i~l~G~~GsGKSTl-~~~La~~l~----~~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTI-GRQLAQQLN----MEFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHH-HHHHHHHTT----CEEEEH
T ss_pred             CCCeEEEECCCCCCHHHH-HHHHHHHhC----CCEEec
Confidence            467899999999999999 677766652    356664

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=96.42  E-value=0.015  Score=58.09  Aligned_cols=40  Identities=18%  Similarity=0.245  Sum_probs=35.8

Q ss_pred             CCCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .+++++.|++ ..|+||||+|.+++..+++.+.+|+++|..
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            4577888886 799999999999999999889999999987

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.36  E-value=0.011  Score=55.85  Aligned_cols=38  Identities=26%  Similarity=0.155  Sum_probs=26.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +-++..-+.|+||||+|||+||..++...   +...++++.
T Consensus        60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~   97 (272)
T 1d2n_A           60 DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS   97 (272)
T ss_dssp             SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred             CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence            34556689999999999999966555542   445565543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.35  E-value=0.0036  Score=57.19  Aligned_cols=40  Identities=25%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCcEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK--LGGNAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~~~~vv~id~E  180 (440)
                      +++|.++.|.|++||||||++- .+.....  .+..+++++++
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~-~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAV-ELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHH-HHHHHHHHHHCCCEEEECHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHH-HHHHHhccccCCcEEEECCh
Confidence            6789999999999999999954 4444443  34458888743

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.34  E-value=0.0025  Score=57.67  Aligned_cols=27  Identities=22%  Similarity=0.069  Sum_probs=20.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +++|.++.|.|+|||||||++..++..
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            568899999999999999995544433

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=96.32  E-value=0.012  Score=60.98  Aligned_cols=55  Identities=31%  Similarity=0.472  Sum_probs=43.6

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEE
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLV  177 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~i  177 (440)
                      ..+.+.||+..+|-++  =+-+|+-..|+|++|+|||+|+..++.+..+. +.-++|.
T Consensus       133 ~~e~l~TGir~ID~l~--pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~  188 (482)
T 2ck3_D          133 EQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  188 (482)
T ss_dssp             CCCEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred             cCcCCccceEEEeccc--ccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence            3467899999999987  45589999999999999999977777776543 2345654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.31  E-value=0.0022  Score=58.20  Aligned_cols=39  Identities=28%  Similarity=0.308  Sum_probs=28.5

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .-+++|.+++|+|++||||||+ .+.+.+...   ++.+++..
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl-~~~L~~~~~---~~~~i~~D   54 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTL-AKNLQKHLP---NCSVISQD   54 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHH-HHHHHTTST---TEEEEEGG
T ss_pred             ccCCCCeEEEEECCCCCCHHHH-HHHHHHhcC---CcEEEeCC
Confidence            3467899999999999999999 455544331   46666654

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=96.31  E-value=0.014  Score=56.77  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=36.1

Q ss_pred             CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          142 KGRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       142 ~G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +++++.|+++ +|.||||+|.+++..++..+.+|++||...
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~  143 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL  143 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4678999986 899999999999999999999999999875

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=96.30  E-value=0.012  Score=55.27  Aligned_cols=40  Identities=33%  Similarity=0.429  Sum_probs=34.9

Q ss_pred             CCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          142 KGRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       142 ~G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .++++.|++ ..|+||||++.+++..+.+.+.+|++||...
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   45 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP   45 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence            457888874 6899999999999999998899999999875

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=96.30  E-value=0.011  Score=59.67  Aligned_cols=106  Identities=20%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChh--hhhhh-cccccc
Q 013567          123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPS--YSKAL-GVDVEN  197 (440)
Q Consensus       123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~--~a~~l-Gv~~~~  197 (440)
                      +.+.||+..+|.++  =+-+|+-..|+|++|+|||+|+.+++......  +-.|+|.---+.....  +.+.+ |    -
T Consensus       157 e~~~tGiraID~l~--PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G----~  230 (427)
T 3l0o_A          157 DPKIYSTRLIDLFA--PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNA----I  230 (427)
T ss_dssp             STTCHHHHHHHHHS--CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCS----E
T ss_pred             cchhccchhhhhcc--cccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCC----e
Confidence            46789999999987  35589999999999999999976666665543  3346665332221110  11111 2    1


Q ss_pred             eeecCCC-CH-------HHHHHHHHHHHhcCCcceEEEecccccC
Q 013567          198 LIVCQPD-NG-------EMALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       198 l~i~~~~-~~-------ee~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      +.....+ ..       ...+..++.+...+.--++++|+++.+.
T Consensus       231 VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A  275 (427)
T 3l0o_A          231 VIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLA  275 (427)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence            2222211 11       1234455555554444567789987664

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.26  E-value=0.0059  Score=64.39  Aligned_cols=101  Identities=20%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH---h-hcCCcEEEEcCCCCCChhh-------hhhhcccccce
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV---Q-KLGGNAMLVDAEHAFDPSY-------SKALGVDVENL  198 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~---~-~~~~~vv~id~E~~~~~~~-------a~~lGv~~~~l  198 (440)
                      ..|...|..+=....++.|.|++|.||||||.+++...   . ....+++|++.........       ...++... ..
T Consensus       134 ~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~-~~  212 (591)
T 1z6t_A          134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDE-SF  212 (591)
T ss_dssp             HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSC-CS
T ss_pred             HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhcccc-cc
Confidence            44566664322346799999999999999988876532   1 1235788887654422211       11222100 00


Q ss_pred             eecCCCCHHHHHHHHHHHHhcC-CcceEEEeccc
Q 013567          199 IVCQPDNGEMALEIADRMCRSG-AIDLICVDSVS  231 (440)
Q Consensus       199 ~i~~~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~  231 (440)
                      .-..+.+.+.+...+...+... ..-++|+|.+.
T Consensus       213 ~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~  246 (591)
T 1z6t_A          213 SQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW  246 (591)
T ss_dssp             CSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred             ccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence            0112345666666666555432 45689999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.24  E-value=0.024  Score=55.24  Aligned_cols=50  Identities=20%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCC
Q 013567          129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAE  180 (440)
Q Consensus       129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E  180 (440)
                      +..|...+..|-.++  +.|+||||+||||++..++..+..   ....++.++..
T Consensus        46 ~~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~   98 (353)
T 1sxj_D           46 VTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS   98 (353)
T ss_dssp             HHHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred             HHHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence            345555554443333  899999999999996665555432   23345556543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.21  E-value=0.00066  Score=64.31  Aligned_cols=26  Identities=35%  Similarity=0.551  Sum_probs=22.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      ++|.++.|.||+||||||+ .++++..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl-~k~La~~   50 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTL-CKALAES   50 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHH-HHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHH-HHHHHHh
Confidence            6899999999999999999 6666643

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.20  E-value=0.005  Score=59.50  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+.++.|.|||||||||++-.++...   +.+.++|+.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~   66 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDN   66 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence            46799999999999999976665433   235677875

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=96.19  E-value=0.016  Score=56.74  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=34.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .++.+.|..|+||||+|.+++..+++.+.+++.+|...
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   52 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP   52 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            57788889999999999999999999999999999875

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=96.18  E-value=0.027  Score=55.64  Aligned_cols=49  Identities=22%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .|+.++.+.  .-.++.+.|..|+||||+|.+++..++..+.+++.+|...
T Consensus         6 ~l~~~l~~~--~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~   54 (334)
T 3iqw_A            6 TLQSILDQR--SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP   54 (334)
T ss_dssp             SSHHHHHCT--TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred             cHHHHhcCC--CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            455556432  2468899999999999999999999999999999999873

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.16  E-value=0.0052  Score=58.27  Aligned_cols=38  Identities=13%  Similarity=0.176  Sum_probs=29.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ++.++.|.|+|||||||+|-.+...+...+..+++++.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~   40 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS   40 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence            46799999999999999977766665545666666664

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.16  E-value=0.0029  Score=67.00  Aligned_cols=40  Identities=30%  Similarity=0.323  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc--EEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN--AMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~--vv~id~E  180 (440)
                      +++|+++.|+|+|||||||| ++++++...+.++  +.++++.
T Consensus       366 ~~~G~iI~LiG~sGSGKSTL-ar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTL-ARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHH-HHHHHHHHHTTCSSCEEEESSH
T ss_pred             cccceEEEEECCCCChHHHH-HHHHHHhhcccCCceEEEECCc
Confidence            56899999999999999999 7788888776554  5568764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.12  E-value=0.0035  Score=63.23  Aligned_cols=30  Identities=43%  Similarity=0.481  Sum_probs=26.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      -++++|+++.|.||||+||||| ++++++..
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl-~~~l~~~~  193 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTL-AAALLELC  193 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHH-HHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCCHHHH-HHHHHhhc
Confidence            4899999999999999999999 66666654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.08  E-value=0.0031  Score=69.44  Aligned_cols=124  Identities=21%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .|+++..-++++||||+|||.+|-.++..+   +...+.+++.+    ....-+|           .+ +..+..+-...
T Consensus       506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~----l~s~~vG-----------es-e~~vr~lF~~A  566 (806)
T 3cf2_A          506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE----LLTMWFG-----------ES-EANVREIFDKA  566 (806)
T ss_dssp             SCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHH----HHTTTCS-----------SC-HHHHHHHHHHH
T ss_pred             cCCCCCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccch----hhccccc-----------hH-HHHHHHHHHHH
Confidence            578777779999999999999965544433   22222222110    1111111           12 22222222223


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      +...+.+++||.+-.+.+......  ++ ..+...|.+.++|..|-.+-...++.||..|...+.+
T Consensus       567 r~~~P~IifiDEiDsl~~~R~~~~--~~-~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l  629 (806)
T 3cf2_A          567 RQAAPCVLFFDELDSIAKARGGNI--GD-GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII  629 (806)
T ss_dssp             HTTCSEEEECSCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred             HHcCCceeechhhhHHhhccCCCC--CC-CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence            455788999999999886332110  00 0112234556666666555444555555555444433

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.05  E-value=0.014  Score=57.47  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~  181 (440)
                      +++|.||+||||||| ++++.++...   ++.+.+++...
T Consensus        94 iigI~GpsGSGKSTl-~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTT-SRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             EEEEECCTTSSHHHH-HHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             EEEEECCCCCCHHHH-HHHHHHHhcccCCCCeEEEEeecc
Confidence            999999999999999 6777777652   34566666543

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=96.04  E-value=0.043  Score=51.02  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             CCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          143 GRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       143 G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ++++.|++ ..|+||||++.+++..+.+.+.+|+++|...
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI   41 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            35677765 5899999999999999999999999999875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.04  E-value=0.0059  Score=54.02  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      |.++.|.|+|||||||++-.+...+-
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999655554443

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.03  E-value=0.015  Score=61.21  Aligned_cols=92  Identities=12%  Similarity=0.058  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHH----HHhhcCCcEEEEcCCCCC--Chh-----hhhhhccccc--ceeecCCCCHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIA----EVQKLGGNAMLVDAEHAF--DPS-----YSKALGVDVE--NLIVCQPDNGE  207 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~----~~~~~~~~vv~id~E~~~--~~~-----~a~~lGv~~~--~l~i~~~~~~e  207 (440)
                      +...++.|+|+.|.||||||.++..    .....-.+++|++.....  +..     +.+.++...+  .+.-.+..+.+
T Consensus       150 ~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~  229 (549)
T 2a5y_B          150 LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSV  229 (549)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHH
Confidence            3457999999999999999888775    233344688899766543  221     3344443321  11111222345


Q ss_pred             HHHHHHHHHHhcCCcceEEEecccc
Q 013567          208 MALEIADRMCRSGAIDLICVDSVSA  232 (440)
Q Consensus       208 e~l~~i~~l~~~~~~~lvVIDsl~~  232 (440)
                      ++...+...+...+.-++|+|.+..
T Consensus       230 ~l~~~l~~~L~~~kr~LlVLDdv~~  254 (549)
T 2a5y_B          230 VLKRMICNALIDRPNTLFVFDDVVQ  254 (549)
T ss_dssp             HHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred             HHHHHHHHHHcCCCcEEEEEECCCC
Confidence            5566666665543255899998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.03  E-value=0.00095  Score=65.50  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=23.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      +.+|+++.|.|+||+||||| ++.+.+...+..+.+.+
T Consensus       170 ~~~G~~~~lvG~sG~GKSTL-ln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSL-LNAISPELGLRTNEISE  206 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHH-HHHHCC-----------
T ss_pred             hcCCCEEEEECCCCCCHHHH-HHHhcccccccccceee
Confidence            34789999999999999999 89988887777777776

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.02  E-value=0.021  Score=56.77  Aligned_cols=40  Identities=18%  Similarity=0.157  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ...+++|+|+||+|||||+.+++..+...+.++..++...
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            3458999999999999998888888877788888887763

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.00  E-value=0.0027  Score=65.02  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             HHHHhcCCCCCCCE--EEEEcCCCCcHHHHHHHHHHHH
Q 013567          132 LDLALGGGLPKGRI--VEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       132 LD~~LgGGi~~G~i--i~I~G~~GsGKTTLaL~li~~~  167 (440)
                      |+.+- =-+++|++  ++|+||||+||||| ++++.+.
T Consensus        30 L~~vs-l~i~~Gei~~vaLvG~nGaGKSTL-ln~L~G~   65 (427)
T 2qag_B           30 DQLVN-KSVSQGFCFNILCVGETGLGKSTL-MDTLFNT   65 (427)
T ss_dssp             HHHHH-HSCC-CCEEEEEEECSTTSSSHHH-HHHHHTS
T ss_pred             cCCCc-eEecCCCeeEEEEECCCCCCHHHH-HHHHhCc
Confidence            55432 36889999  99999999999999 8888876

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=95.99  E-value=0.019  Score=59.62  Aligned_cols=55  Identities=25%  Similarity=0.474  Sum_probs=44.3

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVD  178 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id  178 (440)
                      .+.+.||+..+|-++  =+-+|+-+.|+|++|+|||+|+..++.+..+. +.-++|.-
T Consensus       146 ~e~l~TGirvID~l~--pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~  201 (498)
T 1fx0_B          146 LSIFETGIKVVNLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG  201 (498)
T ss_dssp             CCCCCCSCTTHHHHS--CCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred             ccccccceeEeeeec--ccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence            456899999999987  46689999999999999999987888776543 34566653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.99  E-value=0.0037  Score=56.76  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      +.+|.++.|+|||||||||++-.++.
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999555444

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.99  E-value=0.02  Score=56.55  Aligned_cols=41  Identities=12%  Similarity=0.099  Sum_probs=30.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..+|.++.|.|+||+|||||+..++......+..+..++..
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            35788999999999999999555544444456667666654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.98  E-value=0.0068  Score=53.61  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      ++.|.|+|||||||+|-.+...+...+..+.+++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~   36 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence            6899999999999997666655544444566664

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.96  E-value=0.0005  Score=64.55  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=27.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +++.|.|||||||||| +.++.++..+..+.+++++.
T Consensus        28 ~~~~i~GpnGsGKSTl-l~~i~g~~~~~~G~i~~~g~   63 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTT-MAAFVTALIPDLTLLHFRNT   63 (227)
T ss_dssp             HHHHHHSCCSHHHHHH-HHHHHHHHSCCTTTC-----
T ss_pred             cEEEEECCCCCCHHHH-HHHHhcccccCCCeEEECCE
Confidence            4678999999999999 99999999888777766654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.95  E-value=0.033  Score=54.67  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      ..+.|+||+|+||||++..++..+
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999976555444

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=95.92  E-value=0.038  Score=54.74  Aligned_cols=53  Identities=17%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV  193 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv  193 (440)
                      .-+.-.++.+.|..|+||||+|.+++..+++.+.+++.+|....  ......+|.
T Consensus        22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~--~~l~~~l~~   74 (349)
T 3ug7_A           22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA--HSLRDIFEQ   74 (349)
T ss_dssp             SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT--CHHHHHHCS
T ss_pred             ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC--CCHHHHhCC
Confidence            33445677778899999999999999999999999999998752  233444444

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.91  E-value=0.0077  Score=54.19  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=25.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      +|.++.|.|+|||||||++-.+...+-..+ .++..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~   37 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT   37 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence            467999999999999999766655443333 44443

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.90  E-value=0.029  Score=58.63  Aligned_cols=44  Identities=18%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      +++||.++.+.. .             ....+...+..|.+..+..|+++|+++|-..
T Consensus       300 vlvIDE~~~ll~-~-------------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          300 VVLVDEFADLMM-T-------------VGKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             EEEEETHHHHHH-H-------------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             EEEEeCHHHHHh-h-------------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            678898877752 0             0122456677777888889999999999865

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.88  E-value=0.021  Score=54.88  Aligned_cols=23  Identities=39%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +.|+||+|+||||++..++..+.
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            89999999999999777666653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.88  E-value=0.0054  Score=52.61  Aligned_cols=19  Identities=26%  Similarity=0.079  Sum_probs=15.8

Q ss_pred             CCEEEEEcCCCCcHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLAL  161 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL  161 (440)
                      +.-+.|+|+||+|||++|.
T Consensus        27 ~~~vll~G~~GtGKt~lA~   45 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVAR   45 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHG
T ss_pred             CCcEEEECCCCccHHHHHH
Confidence            3458899999999999953

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.88  E-value=0.0053  Score=56.27  Aligned_cols=26  Identities=12%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +|+++.|.||+|+||||| ++.+.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL-~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHI-KNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHH-HHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHH-HHHHHhhC
Confidence            789999999999999999 55555543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.88  E-value=0.023  Score=57.80  Aligned_cols=34  Identities=18%  Similarity=0.287  Sum_probs=24.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ...++.|+|+|||||||+|-.++...     +..+++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D  290 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRD  290 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccc
Confidence            46899999999999999965554322     45556543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.84  E-value=0.099  Score=50.84  Aligned_cols=82  Identities=18%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE  207 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e  207 (440)
                      .|...+..|=  .-.+.++||||+||||++..++..+...   ....++++.+.                    .....+
T Consensus         8 ~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id   65 (305)
T 2gno_A            8 TLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGID   65 (305)
T ss_dssp             HHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHH
T ss_pred             HHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHH
Confidence            3444443332  3489999999999999977776543111   11222222110                    012445


Q ss_pred             HHHHHHHHHHh---cCCcceEEEecccccC
Q 013567          208 MALEIADRMCR---SGAIDLICVDSVSALT  234 (440)
Q Consensus       208 e~l~~i~~l~~---~~~~~lvVIDsl~~l~  234 (440)
                      ++.+.++....   .++.++++||....+.
T Consensus        66 ~ir~li~~~~~~p~~~~~kvviIdead~lt   95 (305)
T 2gno_A           66 DIRTIKDFLNYSPELYTRKYVIVHDCERMT   95 (305)
T ss_dssp             HHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred             HHHHHHHHHhhccccCCceEEEeccHHHhC
Confidence            55555544422   2346899999987775

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.83  E-value=0.026  Score=55.40  Aligned_cols=85  Identities=12%  Similarity=0.114  Sum_probs=46.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhh--hcccccceeecCC------CCHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKA--LGVDVENLIVCQP------DNGEMALEIAD  214 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~--lGv~~~~l~i~~~------~~~ee~l~~i~  214 (440)
                      ..+.|+||+|+|||++|..++..+.......    . ..-.. ...+.  -|..++ +....+      ...+++.+.++
T Consensus        25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~----~-~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~ir~l~~   98 (334)
T 1a5t_A           25 HALLIQALPGMGDDALIYALSRYLLCQQPQG----H-KSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAVREVTE   98 (334)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHTCSSCBT----T-BCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHHHHHHH
T ss_pred             eeEEEECCCCchHHHHHHHHHHHHhCCCCCC----C-CCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHHHHHHH
Confidence            4799999999999999887777665322110    0 00000 00111  122222 222222      34555555555


Q ss_pred             HHHh---cCCcceEEEecccccC
Q 013567          215 RMCR---SGAIDLICVDSVSALT  234 (440)
Q Consensus       215 ~l~~---~~~~~lvVIDsl~~l~  234 (440)
                      .+..   .++.++++||....+.
T Consensus        99 ~~~~~~~~~~~kvviIdead~l~  121 (334)
T 1a5t_A           99 KLNEHARLGGAKVVWVTDAALLT  121 (334)
T ss_dssp             HTTSCCTTSSCEEEEESCGGGBC
T ss_pred             HHhhccccCCcEEEEECchhhcC
Confidence            4322   2457899999987764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.82  E-value=0.011  Score=52.79  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .++.|.|++|||||||+.+++..+...+..+..+...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~   41 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   41 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence            4799999999999999877777776666666666643

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=95.81  E-value=0.013  Score=54.14  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=33.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      +.|.|..|+||||++.+++..+.+.+.+|+.||....
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   39 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD   39 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5568999999999999999999999999999998753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.81  E-value=0.026  Score=61.71  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=44.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcce
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDL  224 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~l  224 (440)
                      .+.|+||||+|||++|..++..+...+...++++.....+.....                ...+..    .++.....+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----------------~~~l~~----~~~~~~~~v  582 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----------------GGQLTE----KVRRKPYSV  582 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------------------CHH----HHHHCSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----------------cchhhH----HHHhCCCeE
Confidence            699999999999999776666666667788888865432211000                111111    223345679


Q ss_pred             EEEecccccC
Q 013567          225 ICVDSVSALT  234 (440)
Q Consensus       225 vVIDsl~~l~  234 (440)
                      +++|.+..+.
T Consensus       583 l~lDEi~~~~  592 (758)
T 3pxi_A          583 VLLDAIEKAH  592 (758)
T ss_dssp             EEEECGGGSC
T ss_pred             EEEeCccccC
Confidence            9999997664

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.80  E-value=0.0053  Score=57.45  Aligned_cols=23  Identities=43%  Similarity=0.482  Sum_probs=20.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      +++++.|.|||||||||| +++++
T Consensus        26 ~~~~i~l~G~~GsGKSTl-~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTV-CQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHH-HHHHH
T ss_pred             CCcEEEEECCCCCCHHHH-HHHHH
Confidence            468999999999999999 66666

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.79  E-value=0.005  Score=55.59  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF  183 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~  183 (440)
                      ..++.|.|++||||||++-. +....    +..++++....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~-L~~~l----g~~~i~~d~~~   53 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEA-IAEAC----GYPFIEGDALH   53 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHH-HHHHH----TCCEEEGGGGC
T ss_pred             CeEEEEECCCCCCHHHHHHH-HHHHh----CCEEEeCCcCc
Confidence            46899999999999999544 44433    45667665433

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.76  E-value=0.011  Score=53.27  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=27.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      .+|.++.|.|++||||||++-.+...+...+-.+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~   43 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   43 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence            4688999999999999999766665554444444433

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.75  E-value=0.011  Score=54.98  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=28.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..+.+|.++.|.|++||||||++ +.+......+ ..++...+
T Consensus        21 ~~~~~g~~i~i~G~~GsGKsT~~-~~l~~~l~~~-~~~~~~~~   61 (229)
T 4eaq_A           21 QSNAMSAFITFEGPEGSGKTTVI-NEVYHRLVKD-YDVIMTRE   61 (229)
T ss_dssp             CCCCCCEEEEEECCTTSCHHHHH-HHHHHHHTTT-SCEEEECT
T ss_pred             eecCCCeEEEEEcCCCCCHHHHH-HHHHHHHhcC-CCceeecC
Confidence            45668999999999999999995 5555554443 33434333

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.71  E-value=0.028  Score=62.38  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=38.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh-------cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH-HHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQK-------LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM-ALEIADRM  216 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~-------~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee-~l~~i~~l  216 (440)
                      -+.|+||||+|||+++..++..+..       .+..+++++......       |..      . ....++ +...+..+
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~------~-~g~~~~~l~~~~~~~  258 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAK------Y-RGEFEERLKAVIQEV  258 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCc------c-chHHHHHHHHHHHHH
Confidence            4789999999999996666655543       144566665422110       000      0 011222 22333333


Q ss_pred             HhcCCcceEEEecccccCC
Q 013567          217 CRSGAIDLICVDSVSALTP  235 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~~  235 (440)
                      .......+++||.+..+.+
T Consensus       259 ~~~~~~~iL~IDEi~~l~~  277 (854)
T 1qvr_A          259 VQSQGEVILFIDELHTVVG  277 (854)
T ss_dssp             HTTCSSEEEEECCC-----
T ss_pred             HhcCCCeEEEEecHHHHhc
Confidence            3333567899999998874

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.71  E-value=0.014  Score=61.98  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+.++.|.|+||+||||++..++..+...+..+++...
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap  240 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP  240 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence            35799999999999999977777777777777777654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.70  E-value=0.0068  Score=53.26  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.++.|.|+|||||||++-.+...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            579999999999999996554433

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.70  E-value=0.0056  Score=54.19  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+|.++.|.|+|||||||++-.++.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999655443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.68  E-value=0.014  Score=52.34  Aligned_cols=39  Identities=21%  Similarity=0.129  Sum_probs=26.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      ...-.++.|.|++|+|||||+..++..+...+..+..+.
T Consensus         3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            3 KTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence            344568999999999999996666655544444444443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.67  E-value=0.043  Score=53.08  Aligned_cols=45  Identities=20%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .|+.+. . +.. .++.|+||+|+|||+|+.+++....   ..++|++...
T Consensus        21 el~~L~-~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~   65 (357)
T 2fna_A           21 EIEKLK-G-LRA-PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK   65 (357)
T ss_dssp             HHHHHH-H-TCS-SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred             HHHHHH-H-hcC-CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence            444444 3 544 6999999999999999776665542   3478998764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.67  E-value=0.051  Score=55.84  Aligned_cols=69  Identities=28%  Similarity=0.386  Sum_probs=38.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      ..+.|+||||+|||||| +.++...  +...+.++....         +          .....+++..+..........
T Consensus        51 ~~vLL~GppGtGKTtlA-r~ia~~~--~~~f~~l~a~~~---------~----------~~~ir~~~~~a~~~~~~~~~~  108 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLA-EVIARYA--NADVERISAVTS---------G----------VKEIREAIERARQNRNAGRRT  108 (447)
T ss_dssp             CEEEEECSTTSSHHHHH-HHHHHHT--TCEEEEEETTTC---------C----------HHHHHHHHHHHHHHHHTTCCE
T ss_pred             cEEEEECCCCCcHHHHH-HHHHHHh--CCCeEEEEeccC---------C----------HHHHHHHHHHHHHhhhcCCCc
Confidence            46999999999999995 4454443  223333332110         0          001122333333333345678


Q ss_pred             eEEEecccccC
Q 013567          224 LICVDSVSALT  234 (440)
Q Consensus       224 lvVIDsl~~l~  234 (440)
                      +++||.+..+.
T Consensus       109 iLfIDEI~~l~  119 (447)
T 3pvs_A          109 ILFVDEVHRFN  119 (447)
T ss_dssp             EEEEETTTCC-
T ss_pred             EEEEeChhhhC
Confidence            99999998775

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.66  E-value=0.012  Score=57.44  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E  180 (440)
                      +.-+.|+||+|+|||+||..++..+. ..+..++|++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~  190 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP  190 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence            67899999999999999877777777 777888888753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.64  E-value=0.011  Score=51.75  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=24.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .++.|.|+|||||||+|-.+...    ..+..+++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~   34 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINR   34 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEECH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecH
Confidence            47899999999999997655541    235677765

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=95.62  E-value=0.039  Score=54.91  Aligned_cols=51  Identities=16%  Similarity=0.182  Sum_probs=41.2

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCC
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHA  182 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~  182 (440)
                      +.|+.++..  +.-.++...|..|.||||++.+++..++  +.+.+|+.+|....
T Consensus         7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~   59 (354)
T 2woj_A            7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA   59 (354)
T ss_dssp             SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred             ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence            346666642  2245778889999999999999999999  88999999998864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.62  E-value=0.038  Score=61.29  Aligned_cols=84  Identities=19%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAI  222 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~  222 (440)
                      ..+.|+||||+|||++|..+.......+...++++........ ..+.+|..+..+-..   ....+..    .++....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~---~~g~l~~----~~~~~~~  661 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYE---EGGQLTE----AVRRRPY  661 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHHH----HHHHCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCcc---ccchHHH----HHHhCCC
Confidence            4789999999999999766666665556788889876544432 222233222111000   0011111    2223446


Q ss_pred             ceEEEecccccC
Q 013567          223 DLICVDSVSALT  234 (440)
Q Consensus       223 ~lvVIDsl~~l~  234 (440)
                      .++++|.+..+.
T Consensus       662 ~vl~lDEi~~l~  673 (854)
T 1qvr_A          662 SVILFDEIEKAH  673 (854)
T ss_dssp             EEEEESSGGGSC
T ss_pred             eEEEEecccccC
Confidence            799999997664

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.59  E-value=0.081  Score=51.36  Aligned_cols=63  Identities=24%  Similarity=0.209  Sum_probs=37.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcce
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDL  224 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~l  224 (440)
                      .+.|+||||+|||+||..++...   +...+.++.....                     ....+...+.   ......+
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~---~~~~~~v  109 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE---------------------KSGDLAAILT---NLSEGDI  109 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC---------------------SHHHHHHHHH---TCCTTCE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc---------------------chhHHHHHHH---hccCCCE
Confidence            47999999999999966554332   3445555432111                     1112212211   2245679


Q ss_pred             EEEecccccC
Q 013567          225 ICVDSVSALT  234 (440)
Q Consensus       225 vVIDsl~~l~  234 (440)
                      ++||.+..+.
T Consensus       110 l~lDEi~~l~  119 (338)
T 3pfi_A          110 LFIDEIHRLS  119 (338)
T ss_dssp             EEEETGGGCC
T ss_pred             EEEechhhcC
Confidence            9999998775

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.58  E-value=0.019  Score=54.90  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +.|+||+|+|||+++..++..+.
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHhc
Confidence            89999999999999777766654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.55  E-value=0.0085  Score=52.01  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=17.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .++.|.|++||||||++-.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999654443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.52  E-value=0.0089  Score=55.54  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=29.2

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      -+|.|...-+    .-+++.+++.|.|||||||+|.|-.++..+     +..+|++.
T Consensus        14 ~~p~~~~~~~----~~~~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstG   61 (217)
T 3umf_A           14 LVPRGSHMTD----QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSG   61 (217)
T ss_dssp             --------------CCTTSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHH
T ss_pred             cCCCCccccc----hhccCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHH
Confidence            3455544333    456788999999999999999976666543     45666654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.51  E-value=0.015  Score=52.41  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=26.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM  175 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv  175 (440)
                      ..+|.++.|.|++||||||++-.+...+...+-.+.
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            456889999999999999996666555444444443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.50  E-value=0.0032  Score=61.71  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .+++|+|++||||||| ++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTl-l~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTL-LRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHH-HHHHHHSC
T ss_pred             cEEEEEecCCCCHHHH-HHHHHhhc
Confidence            5899999999999999 78887765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.43  E-value=0.0067  Score=57.18  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +.+.++.|.|+|||||||++-.+...+   +.+.+++++..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~   67 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS   67 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence            456799999999999999965554432   23567777754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.42  E-value=0.084  Score=50.74  Aligned_cols=35  Identities=34%  Similarity=0.396  Sum_probs=24.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ...+.|+||+|+|||+||..+....   +...++++..
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~   72 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGP   72 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecc
Confidence            3568899999999999966555443   3455666543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.41  E-value=0.0078  Score=52.00  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=17.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~l  163 (440)
                      .++.|.|+|||||||+|-.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999996555

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.41  E-value=0.017  Score=51.13  Aligned_cols=34  Identities=26%  Similarity=0.250  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      ++.|.|++||||||++-.+...+...+-.++..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            6899999999999997666555543455555443

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.39  E-value=0.011  Score=52.32  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=20.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .+.++.|.|++||||||++..++..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999976655443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.39  E-value=0.011  Score=54.01  Aligned_cols=25  Identities=40%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +.++.|.|++||||||+ .+++.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl-~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTL-CKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHH-HHHHHHHh
Confidence            56899999999999999 56666554

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.39  E-value=0.012  Score=52.56  Aligned_cols=36  Identities=31%  Similarity=0.396  Sum_probs=25.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .++|.++.|+|++||||||++-.+...+.    +..++|.
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~   42 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEV   42 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcC----CCEEeeH
Confidence            45688999999999999999544433212    4556654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.39  E-value=0.13  Score=53.96  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ..++.++|.|||||||+|-.++..+-..+..+..|+.
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~   71 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV   71 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence            4689999999999999988877666445555666654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.38  E-value=0.017  Score=53.93  Aligned_cols=40  Identities=25%  Similarity=0.193  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      +.-++.+.|.+|+||||++.+++..+. .+.+++.++.+..
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~   52 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG   52 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            456899999999999999999998888 8889999987653

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.34  E-value=0.012  Score=52.43  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=20.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .++.++.|.|++||||||+|-.++..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            35679999999999999996555443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=95.33  E-value=0.038  Score=59.67  Aligned_cols=28  Identities=36%  Similarity=0.334  Sum_probs=22.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +++++.++|+|++|+|||||+ ..+.+..
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl-~~L~~~~   33 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLT-EALLYKT   33 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHH-HHHHHHT
T ss_pred             cCCCcEEEEECCCCChHHHHH-HHHHHhc
Confidence            567899999999999999994 4444443

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.32  E-value=0.01  Score=52.49  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.++.|.|+|||||||+|-.++..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999996655443

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=95.29  E-value=0.016  Score=61.53  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCeeecc--CCC---CCCccccccCc-----------------HHHHHHhcC-CCCCCC
Q 013567           88 FLDRQRALDAAMNDINSSFGKGSVTRLG--SAG---GALVETFPSGC-----------------LTLDLALGG-GLPKGR  144 (440)
Q Consensus        88 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~--~~~---~~~~~~i~TGi-----------------~~LD~~LgG-Gi~~G~  144 (440)
                      .+...+..++.+.++.+.|+.-.+..+.  ...   ......+.+++                 +.||.++++ +-....
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~i~~vPl~~~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  328 (589)
T 1ihu_A          249 AAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSALVDDIARNEHG  328 (589)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHHHHTTCSCC-----------CCCCCCCHHHHHHHHHTTSCE
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCEEEecCCCCCCCCHHHHHHHHhhhhccccccccccccccccchhhhhhhhhhccCCe
Confidence            4455566667777777777654432221  111   11233455555                 678887743 233455


Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      ++.+.|.+|+||||++.+++..+.+.+..++++|....
T Consensus       329 ~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~  366 (589)
T 1ihu_A          329 LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA  366 (589)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             EEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            77788999999999999999999999999999998743

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.25  E-value=0.012  Score=51.87  Aligned_cols=25  Identities=24%  Similarity=0.143  Sum_probs=20.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ..+.++.|.|+|||||||++..+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4577899999999999999655443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.23  E-value=0.01  Score=59.30  Aligned_cols=26  Identities=35%  Similarity=0.586  Sum_probs=21.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ++| +++|+|||||||||| +..+..+.
T Consensus        22 ~~g-~~~i~G~NGaGKTTl-l~ai~~al   47 (365)
T 3qf7_A           22 QSG-ITVVEGPNGAGKSSL-FEAISFAL   47 (365)
T ss_dssp             CSE-EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred             CCC-eEEEECCCCCCHHHH-HHHHHHHh
Confidence            466 899999999999999 77776543

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=95.23  E-value=0.03  Score=56.23  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=33.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .++.+.|..|+||||++.+++..++..+.+++++|.
T Consensus         3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~   38 (374)
T 3igf_A            3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL   38 (374)
T ss_dssp             EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence            477889999999999999999999999999999998

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.22  E-value=0.011  Score=55.80  Aligned_cols=24  Identities=38%  Similarity=0.620  Sum_probs=19.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++.|.|||||||||||..++...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            378999999999999987776543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.20  E-value=0.0028  Score=57.15  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=22.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      -+++|..++|+|+||+||||| ++.+.+.
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTL-l~~l~g~   49 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSA-LNTLTNQ   49 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHH-HTTTCCC
T ss_pred             CCCCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence            367899999999999999999 6655443

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.20  E-value=0.05  Score=52.76  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF  183 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~  183 (440)
                      +.+.-+.|+|+||+|||++|-.+.....+.+...++++.....
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~   65 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN   65 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence            3455789999999999999655555444556677888776543

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.18  E-value=0.013  Score=59.70  Aligned_cols=30  Identities=30%  Similarity=0.557  Sum_probs=25.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL  170 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~  170 (440)
                      +++|+++.|+||||+||||| +..+..+..+
T Consensus        23 ~~~~~~~~i~G~nG~GKstl-l~ai~~~~~~   52 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNM-MDAISFVLGV   52 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHH-HHHHHHHTTC
T ss_pred             ecCCCEEEEECCCCCCHHHH-HHHHHhhhcc
Confidence            45689999999999999999 8888877643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.18  E-value=0.064  Score=58.51  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      .+.|+||||+|||++|..++..+   +...+.++..+..+.. ..+.+|..+.       ....+....+...++.....
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g-------~~g~~~~~~l~~~~~~~~~~  559 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPG-------YVGFDQGGLLTDAVIKHPHA  559 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSC-------SHHHHHTTHHHHHHHHCSSE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCC-------CcCccccchHHHHHHhCCCc
Confidence            68999999999999965554444   4677788765443321 2222333221       11111111122233345568


Q ss_pred             eEEEecccccC
Q 013567          224 LICVDSVSALT  234 (440)
Q Consensus       224 lvVIDsl~~l~  234 (440)
                      ++++|.+..+.
T Consensus       560 vl~lDEi~~~~  570 (758)
T 1r6b_X          560 VLLLDEIEKAH  570 (758)
T ss_dssp             EEEEETGGGSC
T ss_pred             EEEEeCccccC
Confidence            99999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.05  E-value=0.016  Score=51.88  Aligned_cols=25  Identities=28%  Similarity=0.519  Sum_probs=20.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+|.++.|.|++||||||++-.+..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3678999999999999999544443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.05  E-value=0.016  Score=52.98  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +|.++.|.|+|||||||+|-.++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999996655543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.02  E-value=0.011  Score=52.06  Aligned_cols=23  Identities=35%  Similarity=0.336  Sum_probs=14.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      ++.++.|.|+|||||||+|-.+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            56799999999999999965543

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.99  E-value=0.013  Score=58.49  Aligned_cols=26  Identities=38%  Similarity=0.708  Sum_probs=22.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++| ++.|+||||+||||+ +..+..+
T Consensus        24 ~~~g-~~~i~G~nG~GKttl-l~ai~~~   49 (359)
T 2o5v_A           24 FPEG-VTGIYGENGAGKTNL-LEAAYLA   49 (359)
T ss_dssp             CCSE-EEEEECCTTSSHHHH-HHHHHHH
T ss_pred             EcCC-eEEEECCCCCChhHH-HHHHHHh
Confidence            4677 999999999999999 8888763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.97  E-value=0.014  Score=57.38  Aligned_cols=24  Identities=46%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +.+.|+||||+||||| ++++++..
T Consensus        52 ~~~ll~Gp~G~GKTTL-a~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTL-AHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHH-HHHHHHHH
T ss_pred             CeEEEECCCCCcHHHH-HHHHHHHh
Confidence            5789999999999999 77777766

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.97  E-value=0.021  Score=52.25  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      -++.|+|+||||||++|..++....
T Consensus         6 mi~l~tG~pGsGKT~~a~~~~~~~~   30 (199)
T 2r2a_A            6 EICLITGTPGSGKTLKMVSMMANDE   30 (199)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCG
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999988776654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.97  E-value=0.018  Score=51.72  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+.++.|.|+|||||||+|-.+...
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999996555443

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.90  E-value=0.015  Score=53.59  Aligned_cols=27  Identities=22%  Similarity=0.212  Sum_probs=19.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      +..++.++.|.|+|||||||+|-.++.
T Consensus         3 ~~~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            3 ASARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             ----CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999655544

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.86  E-value=0.018  Score=51.35  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+.++.|.|++||||||+|-.+...
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999996555443

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=94.85  E-value=0.12  Score=54.37  Aligned_cols=56  Identities=20%  Similarity=0.202  Sum_probs=40.9

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .+.+.||+..+|.++  =+-+|+-..|.|++|+|||+|+.+++ ... ...-++|.-.-+
T Consensus       208 ~epl~TGirvID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia-~~~-~~~~~V~~~iGE  263 (588)
T 3mfy_A          208 EVPLITGQRVIDTFF--PQAKGGTAAIPGPAGSGKTVTQHQLA-KWS-DAQVVIYIGCGE  263 (588)
T ss_dssp             CSEECCSCHHHHHHS--CEETTCEEEECSCCSHHHHHHHHHHH-HHS-SCSEEEEEECCS
T ss_pred             CcccccCcchhhccC--CcccCCeEEeecCCCCCHHHHHHHHH-hcc-CCCEEEEEEecc
Confidence            356789999999987  45589999999999999999965543 322 223566654333

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=94.84  E-value=0.063  Score=56.77  Aligned_cols=44  Identities=20%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567          224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY  281 (440)
Q Consensus       224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~  281 (440)
                      +||||.+..+....      +        ..+...+..|.+..+..|+.+|+.+|-..
T Consensus       346 vvVIDE~~~L~~~~------~--------~~~~~~L~~Iar~GRa~GIhLIlaTQRPs  389 (574)
T 2iut_A          346 VVVVDEFADMMMIV------G--------KKVEELIARIAQKARAAGIHLILATQRPS  389 (574)
T ss_dssp             EEEESCCTTHHHHT------C--------HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred             EEEEeCHHHHhhhh------h--------HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence            78899998876311      1        12445677788888999999999999754

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.82  E-value=0.031  Score=55.99  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF  183 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~  183 (440)
                      ...+.-+.|+|++|+||||++..++......+..++++|.....
T Consensus        32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~   75 (392)
T 4ag6_A           32 DRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY   75 (392)
T ss_dssp             TBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred             ccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence            34566789999999999999766666677777888888876543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.80  E-value=0.016  Score=55.99  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF  183 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~  183 (440)
                      ++-+++|.|++||||||+|-.+...+-..+..+.++++..-.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            456899999999999999665554443344457778766533

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.78  E-value=0.017  Score=55.91  Aligned_cols=30  Identities=23%  Similarity=0.161  Sum_probs=23.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      .-.++.+++|.|++||||||| .+.+.+...
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTl-a~~L~~~l~   56 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFT-SIQIYNHLM   56 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHH-HHHHHHHhh
Confidence            345678999999999999999 455555554

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.78  E-value=0.01  Score=53.69  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      ++.|.|++||||||++-.++..+...+..+..+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~   34 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            789999999999999655554443333344444

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.73  E-value=0.019  Score=52.70  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ++.|.|||||||+|.|-.++...     +..+|++.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGd   33 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGD   33 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHH
Confidence            67899999999999977666543     566777543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.72  E-value=0.015  Score=52.51  Aligned_cols=29  Identities=41%  Similarity=0.472  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +++|+|++||||||+ .+++++     -+..++|+
T Consensus         4 ~i~l~G~~GsGKST~-~~~La~-----lg~~~id~   32 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTI-ANLFTD-----LGVPLVDA   32 (206)
T ss_dssp             EEEEECSTTSCHHHH-HHHHHT-----TTCCEEEH
T ss_pred             EEEEECCCCCCHHHH-HHHHHH-----CCCcccch
Confidence            789999999999999 555554     24555654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.71  E-value=0.02  Score=49.57  Aligned_cols=23  Identities=43%  Similarity=0.486  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +++|+||||+||||+ +..+.-+.
T Consensus        25 ~~~I~G~NGsGKSti-l~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSL-LDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred             eEEEECCCCCCHHHH-HHHHHHHH
Confidence            899999999999999 66665444

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.71  E-value=0.015  Score=53.35  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .|..+.|.||+|+||||||+.++..
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999998877643

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.67  E-value=0.014  Score=55.30  Aligned_cols=36  Identities=28%  Similarity=0.330  Sum_probs=27.0

Q ss_pred             CCCC---CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPK---GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~---G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -+.+   |+++.|.|++||||||+ .++++...    +..|+|.
T Consensus        41 ~i~~~l~g~~i~l~G~~GsGKSTl-~~~La~~l----g~~~~d~   79 (250)
T 3nwj_A           41 EVKPYLNGRSMYLVGMMGSGKTTV-GKIMARSL----GYTFFDC   79 (250)
T ss_dssp             TTHHHHTTCCEEEECSTTSCHHHH-HHHHHHHH----TCEEEEH
T ss_pred             hhhhhcCCCEEEEECCCCCCHHHH-HHHHHHhc----CCcEEeC
Confidence            4555   89999999999999999 66666654    2345553

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.64  E-value=0.026  Score=52.95  Aligned_cols=38  Identities=11%  Similarity=0.275  Sum_probs=25.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~  181 (440)
                      .+++|.|++||||||+|-.+...+-.+     +..++++++..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~   65 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   65 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence            489999999999999965554433211     34566666543

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.62  E-value=0.032  Score=54.63  Aligned_cols=43  Identities=16%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .+..-++++|+|.=|.||||++.+++..+++.|.+|+.||..-
T Consensus        44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp   86 (314)
T 3fwy_A           44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP   86 (314)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred             CCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4566789999999999999999999999999999999999874

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.62  E-value=0.023  Score=57.45  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=25.7

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      |=++.|..++|+|+||+||||| ++.+.+
T Consensus        15 g~v~~g~~vgiVG~pnaGKSTL-~n~Ltg   42 (392)
T 1ni3_A           15 GRPGNNLKTGIVGMPNVGKSTF-FRAITK   42 (392)
T ss_dssp             SSSSSCCEEEEEECSSSSHHHH-HHHHHH
T ss_pred             ccccCCCEEEEECCCCCCHHHH-HHHHHC
Confidence            6778899999999999999999 888887

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.61  E-value=0.034  Score=51.22  Aligned_cols=41  Identities=12%  Similarity=0.148  Sum_probs=35.0

Q ss_pred             CCCEEEEEc-CCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCC
Q 013567          142 KGRIVEIFG-PESSGKTTLALHAIAEVQKL-GGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G-~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~  182 (440)
                      .++++.|++ ..|+||||++.+++..+.+. +.+|+++|....
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            456777776 48999999999999999988 999999998744

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=94.59  E-value=0.02  Score=61.56  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      ...+..|.||||+|||+...+++..+.+.+..++.....+.
T Consensus       204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~  244 (646)
T 4b3f_X          204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI  244 (646)
T ss_dssp             CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence            34699999999999999989999999888888777765543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.57  E-value=0.037  Score=51.01  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=27.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      .+|.++.|.|++||||||++-.+...+...+..++..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            3688999999999999999665555555555566544

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=94.56  E-value=0.029  Score=52.70  Aligned_cols=37  Identities=24%  Similarity=0.433  Sum_probs=33.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ++.|.|..|+||||++.+++..+.+.+.+|+++|...
T Consensus         3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~   39 (269)
T 1cp2_A            3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence            5677899999999999999999998899999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.53  E-value=0.02  Score=50.64  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=18.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .++.|.|+|||||||+|-.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999655544

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.53  E-value=0.02  Score=51.55  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +++|.|++||||||+ .+.+++
T Consensus         3 ~i~i~G~~GsGKSTl-~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTV-AQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHH-HHHHHH
T ss_pred             EEEEECCCCcCHHHH-HHHHHH
Confidence            689999999999999 555555

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.53  E-value=0.018  Score=60.73  Aligned_cols=26  Identities=42%  Similarity=0.624  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +|.++.|+||||+||||| .+.+++..
T Consensus       107 ~g~~vll~Gp~GtGKTtl-ar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSL-AKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHH-HHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHH-HHHHHHhc
Confidence            799999999999999999 55655554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.53  E-value=0.042  Score=62.44  Aligned_cols=101  Identities=19%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h--cCCcEEEEcCCCCCChh-------hhhhhcccccce
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--K--LGGNAMLVDAEHAFDPS-------YSKALGVDVENL  198 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~--~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l  198 (440)
                      ..|...|..+=...+++.|+|+.|.||||||.+++....  .  ...+++|++........       +...++.... .
T Consensus       134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~-~  212 (1249)
T 3sfz_A          134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES-F  212 (1249)
T ss_dssp             HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCT-T
T ss_pred             HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcc-c
Confidence            345555532223457999999999999999988876532  1  34678899876543322       1122221110 0


Q ss_pred             eecCCCCHHHHHHHHHHHHhcC-CcceEEEeccc
Q 013567          199 IVCQPDNGEMALEIADRMCRSG-AIDLICVDSVS  231 (440)
Q Consensus       199 ~i~~~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~  231 (440)
                      .-..+...+++.+.+...+... +.-++|+|.+.
T Consensus       213 ~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~  246 (1249)
T 3sfz_A          213 SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW  246 (1249)
T ss_dssp             CSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC
T ss_pred             ccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC
Confidence            1112345667777776665432 24488999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.51  E-value=0.02  Score=50.32  Aligned_cols=21  Identities=33%  Similarity=0.297  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ++.|.|+|||||||++-.++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999655543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.50  E-value=0.018  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .++|+|++|+||||| ++.+.+..
T Consensus        31 kv~lvG~~g~GKSTL-l~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNL-LSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHH-HHHHHHSC
T ss_pred             EEEEECcCCCCHHHH-HHHHhcCC
Confidence            689999999999999 66666654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.46  E-value=0.025  Score=50.43  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ++.|.|++||||||++-.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999554443

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.44  E-value=0.023  Score=52.03  Aligned_cols=25  Identities=28%  Similarity=0.151  Sum_probs=19.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+.++.|.|+|||||||++-.++..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999996555443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.43  E-value=0.025  Score=52.92  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=25.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .++.++.|.|+|||||||+|-.++...     +..+++.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~   60 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLST   60 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEec
Confidence            456799999999999999976665443     3455554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.41  E-value=0.061  Score=45.52  Aligned_cols=20  Identities=25%  Similarity=0.507  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -+.|+|++|+|||||..+++
T Consensus         5 ~i~v~G~~~~GKSsli~~l~   24 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999954444

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.39  E-value=0.11  Score=50.96  Aligned_cols=25  Identities=28%  Similarity=0.519  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +.++.|.||+|+|||||+..++...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4589999999999999988776543

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=94.37  E-value=0.28  Score=46.10  Aligned_cols=117  Identities=17%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             CCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcC----CCC-----CChhhh----hhh--cccccce--eec-CC
Q 013567          143 GRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDA----EHA-----FDPSYS----KAL--GVDVENL--IVC-QP  203 (440)
Q Consensus       143 G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~----E~~-----~~~~~a----~~l--Gv~~~~l--~i~-~~  203 (440)
                      ...+.|+|. +|+|||++++-++..+.+.+..+.||-.    ...     .+..+.    +++  |+..+++  +.+ .|
T Consensus        21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p  100 (242)
T 3qxc_A           21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKV  100 (242)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSS
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCC
Confidence            456777885 9999999999999999999999999862    111     111122    222  4433221  222 22


Q ss_pred             ---------------CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 013567          204 ---------------DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK  268 (440)
Q Consensus       204 ---------------~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~  268 (440)
                                     ...+++.+.++++  ....++++||....+...  +..+ .                ....+++.
T Consensus       101 ~sp~~aa~~~g~~~~i~~~~I~~~~~~l--~~~~D~vlIEGagGl~~p--l~~~-~----------------~~adlA~~  159 (242)
T 3qxc_A          101 SAPLIAQQEEDPNAPIDTDNLTQRLHNF--TKTYDLVIVEGAGGLCVP--ITLE-E----------------NMLDFALK  159 (242)
T ss_dssp             SCHHHHHHHHCTTCCCCHHHHHHHHHHG--GGTCSEEEEECCSCTTCB--SSSS-C----------------BHHHHHHH
T ss_pred             CChHHHHHHcCCCCcCCHHHHHHHHHHH--HhcCCEEEEECCCCcccc--cccc-c----------------hHHHHHHH
Confidence                           2344444444443  246789999998877632  1110 0                01234556


Q ss_pred             cCCEEEEEeccc
Q 013567          269 AGCTLIFLNQIR  280 (440)
Q Consensus       269 ~~~tVI~inhl~  280 (440)
                      .+.+||++....
T Consensus       160 l~~pVILV~~~~  171 (242)
T 3qxc_A          160 LKAKMLLISHDN  171 (242)
T ss_dssp             HTCEEEEEECCS
T ss_pred             cCCCEEEEEcCC
Confidence            689999987654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.35  E-value=0.025  Score=50.79  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=18.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ..++.|.|++||||||+|-.++.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999655543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.35  E-value=0.025  Score=49.85  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ..++.|.|++||||||+|-.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999655544

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=94.34  E-value=0.067  Score=53.15  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChhhhhhhcc
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPSYSKALGV  193 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~~a~~lGv  193 (440)
                      +.|+.++..  +.-+++.+.|..|+||||+|.+++..++  ..+.+++.+|...  .......+|.
T Consensus         7 ~~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~--~~~l~~~~~~   68 (348)
T 3io3_A            7 PTLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP--AHNLSDAFCQ   68 (348)
T ss_dssp             SSSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS--SCHHHHHHTS
T ss_pred             hhHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC--CCChHHHhcc
Confidence            346666642  2347999999999999999999999999  8899999999873  3333444443

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=94.33  E-value=0.036  Score=52.95  Aligned_cols=38  Identities=26%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +++.|.|..|+||||+|.+++..+.+.+.+|+.||...
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~   40 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            36777899999999999999999998899999999874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.30  E-value=0.028  Score=50.99  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+.|.|+|||||||+|-.++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999996555443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.26  E-value=0.031  Score=48.59  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=17.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li  164 (440)
                      +++.|.|++||||||++-.+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            689999999999999965444

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=94.21  E-value=0.05  Score=56.16  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=35.5

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|+.+++...
T Consensus       133 ~e~l~TGir~ID~l~--pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~  176 (469)
T 2c61_A          133 KDFIQTGISTIDGTN--TLVRGQKLPIFSASGLPHNEIALQIARQA  176 (469)
T ss_dssp             CSBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred             ccccceeeEeeeeee--ccccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999987  45588899999999999999955444443

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=94.18  E-value=0.11  Score=58.76  Aligned_cols=44  Identities=27%  Similarity=0.259  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH--h-hcCCcEEEEcCCCCCCh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEV--Q-KLGGNAMLVDAEHAFDP  185 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~--~-~~~~~vv~id~E~~~~~  185 (440)
                      ...++.|+|+.|.||||||.++....  . .-+.+++|++.....+.
T Consensus       149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~  195 (1221)
T 1vt4_I          149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP  195 (1221)
T ss_dssp             SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred             CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence            36799999999999999988877532  2 23457899987665554

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=94.16  E-value=0.054  Score=49.66  Aligned_cols=38  Identities=26%  Similarity=0.421  Sum_probs=32.7

Q ss_pred             CEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +++.|++ ..|+||||++.+++..+.+.+.+++++|...
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence            4666665 5899999999999999998899999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.15  E-value=0.08  Score=46.42  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      -+.|+|++|+|||||..+++.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999555543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.14  E-value=0.027  Score=50.31  Aligned_cols=31  Identities=29%  Similarity=0.307  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ..++.|.|++||||||++ +.++..     +..+++.
T Consensus         8 ~~~I~i~G~~GsGKST~~-~~La~~-----g~~~id~   38 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVA-ALLRSW-----GYPVLDL   38 (203)
T ss_dssp             CEEEEEEECTTSCHHHHH-HHHHHT-----TCCEEEH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHHC-----CCEEEcc
Confidence            458999999999999995 444332     4556654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.11  E-value=0.03  Score=51.24  Aligned_cols=26  Identities=27%  Similarity=0.235  Sum_probs=20.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +|..+.|.|+|||||||+|-.++..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999965554433

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.09  E-value=0.029  Score=48.76  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=17.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .++.|.|++||||||+|-.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999655443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.08  E-value=0.046  Score=52.05  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=25.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +.-+.|+||||+|||++|..++..+   +...++++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~   85 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK   85 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence            3467899999999999965554443   44677776543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.07  E-value=0.035  Score=52.19  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=28.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      +.-+.|+|+||+|||++|..+.......+...++++....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            3568899999999999965554444444567888876644

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.02  E-value=0.048  Score=50.88  Aligned_cols=40  Identities=23%  Similarity=0.428  Sum_probs=25.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEE
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLV  177 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~i  177 (440)
                      |-..+|.++.|.|++||||||++-.+...+...    +..+++.
T Consensus        20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~   63 (227)
T 3v9p_A           20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT   63 (227)
T ss_dssp             ---CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence            334689999999999999999966665555444    5566544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.02  E-value=0.39  Score=49.28  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=26.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      ..++.++|.|||||||++-+++..+-.....+..++
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~   74 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   74 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence            458999999999999998777766554444444443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.02  E-value=0.14  Score=52.48  Aligned_cols=19  Identities=37%  Similarity=0.683  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      .++|+|+||+||||| ++.+
T Consensus        25 ~V~lvG~~nvGKSTL-~n~l   43 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTI-FNRI   43 (456)
T ss_dssp             EEEEECSSSSSHHHH-HHHH
T ss_pred             EEEEECCCCCcHHHH-HHHH
Confidence            799999999999999 4444

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.00  E-value=0.11  Score=43.77  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -+.|+|++|+|||||..+++
T Consensus         3 ki~v~G~~~~GKSsli~~l~   22 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLL   22 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999955544

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.99  E-value=0.037  Score=51.25  Aligned_cols=36  Identities=33%  Similarity=0.330  Sum_probs=25.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -.++|.++.|.|++||||||+ .++++...    +..+++.
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~-~~~l~~~l----g~~~~d~   47 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTV-AKIIAKDF----GFTYLDT   47 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHH-HHHHHHHH----CCEEEEH
T ss_pred             cccCCcEEEEECCCCCCHHHH-HHHHHHHc----CCceecC
Confidence            456889999999999999999 45555433    3445554

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.99  E-value=0.031  Score=50.76  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+.|.|+|||||||+|-.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999655543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.97  E-value=0.064  Score=50.35  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=27.2

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc-EEEE
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN-AMLV  177 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~-vv~i  177 (440)
                      +.-.+|.++.|.|++||||||++-.+...+...+.. +++.
T Consensus        22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~   62 (236)
T 3lv8_A           22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT   62 (236)
T ss_dssp             ----CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence            344468899999999999999966666555555555 4443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.96  E-value=0.19  Score=42.48  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|++|+|||||..+++.
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999555544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.96  E-value=0.13  Score=43.44  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -+.|+|++|+|||||..+++
T Consensus         6 ~i~v~G~~~~GKssl~~~l~   25 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999944444

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.93  E-value=0.056  Score=51.74  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=26.8

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      |...+.|..++-..+.|+||||+|||.||..++..
T Consensus        93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            55556454577778999999999999997755553

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.91  E-value=0.018  Score=55.90  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH-hhcCCcEEEEcC
Q 013567          146 VEIFGPESSGKTTLALHAIAEV-QKLGGNAMLVDA  179 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~-~~~~~~vv~id~  179 (440)
                      ++|+|++|+||||| ++.+.+. ..+..+ +.+++
T Consensus        21 I~lvG~nG~GKSTL-l~~L~g~~~~~~~g-i~~~g   53 (301)
T 2qnr_A           21 LMVVGESGLGKSTL-INSLFLTDLYPERV-ISGAA   53 (301)
T ss_dssp             EEEEEETTSSHHHH-HHHHHC--------------
T ss_pred             EEEECCCCCCHHHH-HHHHhCCCccCCCC-cccCC
Confidence            38999999999999 7776654 444445 44443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=93.88  E-value=0.031  Score=50.56  Aligned_cols=23  Identities=43%  Similarity=0.605  Sum_probs=18.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.+.|.||+|+|||||+-.++..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999996555443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.86  E-value=0.033  Score=55.22  Aligned_cols=35  Identities=17%  Similarity=0.450  Sum_probs=26.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .++.++.|+||+|+|||||+..++..+     +.-+|+..
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~D   72 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSD   72 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECC
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccc
Confidence            456799999999999999987776533     34556654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.85  E-value=0.19  Score=50.91  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++.|.||+|+|||||+..++...
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            488999999999999988887665

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.81  E-value=0.16  Score=55.32  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=21.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .+.-+.|+||||+|||+++..++..+.
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l~  232 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRIV  232 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence            566789999999999999666665553

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=93.78  E-value=0.049  Score=51.21  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=34.0

Q ss_pred             CCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          142 KGRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      .++++.|++ ..|+||||+|.+++..+. .+.+|++||....
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~   66 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ   66 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            467787765 599999999999999999 8999999998743

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=93.76  E-value=0.04  Score=50.19  Aligned_cols=24  Identities=42%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .++.|+||||+||||+ +..+.-+.
T Consensus        24 ~~~~I~G~NgsGKSti-l~ai~~~l   47 (203)
T 3qks_A           24 GINLIIGQNGSGKSSL-LDAILVGL   47 (203)
T ss_dssp             EEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHH-HHHHHHHh
Confidence            4999999999999999 77665554

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.75  E-value=0.048  Score=50.36  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+..+.|.|++||||||+|-.++..+     +..+++.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~   47 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLAT   47 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecH
Confidence            45689999999999999966555443     2455654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.73  E-value=0.11  Score=46.84  Aligned_cols=21  Identities=38%  Similarity=0.477  Sum_probs=17.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li  164 (440)
                      --+.|+|++|+|||||..+++
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~   33 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLT   33 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999954444

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=93.72  E-value=0.053  Score=51.82  Aligned_cols=41  Identities=20%  Similarity=0.272  Sum_probs=35.5

Q ss_pred             CCCEEEEEc---CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          142 KGRIVEIFG---PESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       142 ~G~ii~I~G---~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      .++++.|++   ..|+||||++.+++..+.+.+.+|+.||....
T Consensus        33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q   76 (298)
T 2oze_A           33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ   76 (298)
T ss_dssp             HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            466777776   89999999999999999988999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.69  E-value=0.042  Score=51.55  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .-++.|.||+||||||++-. ++...    +..|++..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~-la~~l----g~~~~d~g   41 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRG-LARAL----GARYLDTG   41 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHH-HHHHH----TCEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHH-HHHHh----CCCcccCC
Confidence            45899999999999999544 44333    34556543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.66  E-value=0.046  Score=47.29  Aligned_cols=21  Identities=24%  Similarity=0.215  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+.|.|++||||||+|-.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999544443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.65  E-value=0.087  Score=53.99  Aligned_cols=42  Identities=29%  Similarity=0.237  Sum_probs=29.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .|..++.-+.|+||||+|||++|..++.. .......+++++.
T Consensus        58 ~~~~~~~~iLl~GppGtGKT~la~ala~~-l~~~~~~~~~~~~   99 (456)
T 2c9o_A           58 SKKMAGRAVLLAGPPGTGKTALALAIAQE-LGSKVPFCPMVGS   99 (456)
T ss_dssp             TTCCTTCEEEEECCTTSSHHHHHHHHHHH-HCTTSCEEEEEGG
T ss_pred             hCCCCCCeEEEECCCcCCHHHHHHHHHHH-hCCCceEEEEeHH
Confidence            46666677999999999999997655544 3333455555543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.64  E-value=0.037  Score=49.72  Aligned_cols=24  Identities=33%  Similarity=0.318  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .|.-+.|.|++|+||||+|+.++.
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            366799999999999999988876

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.64  E-value=0.081  Score=48.77  Aligned_cols=31  Identities=29%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGG  172 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~  172 (440)
                      +|.++.|.|++||||||++-.+...+...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~   32 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI   32 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            4889999999999999996555555544454

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=93.59  E-value=0.024  Score=53.27  Aligned_cols=71  Identities=23%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceE
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLI  225 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lv  225 (440)
                      +.|+||||+|||+||..++...   +...++++.......    ..|...        .....++..+.    ...+.++
T Consensus        47 vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----~~~~~~--------~~~~~~~~~a~----~~~~~vl  107 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM----FVGLGA--------SRVRDLFETAK----KQAPSII  107 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS----CSSSCS--------SSSSTTHHHHH----HSCSCEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh----hcchHH--------HHHHHHHHHHH----hcCCeEE
Confidence            7899999999999965555443   223344433221110    011100        11112222222    2357899


Q ss_pred             EEecccccCC
Q 013567          226 CVDSVSALTP  235 (440)
Q Consensus       226 VIDsl~~l~~  235 (440)
                      +||.+..+.+
T Consensus       108 ~iDEid~l~~  117 (268)
T 2r62_A          108 FIDEIDAIGK  117 (268)
T ss_dssp             EESCGGGTTC
T ss_pred             EEeChhhhcc
Confidence            9999988864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=93.58  E-value=0.044  Score=49.88  Aligned_cols=32  Identities=34%  Similarity=0.417  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+.++.|.|++||||||+ .+.+.. .    +..+++.
T Consensus         3 ~~~~I~i~G~~GSGKST~-~~~L~~-l----g~~~id~   34 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTV-ANAFAD-L----GINVIDA   34 (218)
T ss_dssp             CCEEEEEECCTTSCHHHH-HHHHHH-T----TCEEEEH
T ss_pred             CceEEEEECCCCCCHHHH-HHHHHH-c----CCEEEEc
Confidence            356899999999999999 455544 2    4456654

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=93.54  E-value=0.043  Score=56.46  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      -+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|+.+++...
T Consensus       132 ~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~  175 (465)
T 3vr4_D          132 DEFIQTGISAIDHLN--TLVRGQKLPVFSGSGLPHKELAAQIARQA  175 (465)
T ss_dssp             CCBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred             ccccccCceEEeccc--ccccCCEEEEeCCCCcChHHHHHHHHHHH
Confidence            346789999999987  45578889999999999999965544443

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=93.51  E-value=0.15  Score=51.77  Aligned_cols=39  Identities=15%  Similarity=0.108  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCCCcHHHHH-HHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLA-LHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLa-L~li~~~~~~~~~vv~id~E  180 (440)
                      +|+.+.+.||+|||||..+ +.++..+...+..++++...
T Consensus         1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt   40 (431)
T 2v6i_A            1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPT   40 (431)
T ss_dssp             -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence            4789999999999999986 44554666677788888644

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.50  E-value=0.041  Score=49.12  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++|+|++|+||||| ++.+.+.
T Consensus         7 kv~lvG~~g~GKSTL-l~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNL-LSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHH-HHHHHHS
T ss_pred             EEEEECcCCCCHHHH-HHHHhcC
Confidence            478999999999999 6666654

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=93.49  E-value=0.083  Score=55.92  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ..+++.+.|.+|.||||++.+++..+++.|.+++++|+..
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~   46 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4679999999999999999999999999999999999875

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=93.48  E-value=0.036  Score=56.93  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCC-cEEEEcCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGG-NAMLVDAE  180 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~-~vv~id~E  180 (440)
                      .+.|.|++|+||||++..++..+...+. .++.+...
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T   83 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT   83 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence            9999999999999998887777776665 45555443

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=93.46  E-value=0.037  Score=59.00  Aligned_cols=40  Identities=28%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-cEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG-NAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~-~vv~id~E  180 (440)
                      +..|+.+.|+||||+||||| .+.+++...+.. +.+++...
T Consensus        57 i~~g~~vll~Gp~GtGKTtl-ar~ia~~l~~~~~~~~~~~~~   97 (604)
T 3k1j_A           57 ANQKRHVLLIGEPGTGKSML-GQAMAELLPTETLEDILVFPN   97 (604)
T ss_dssp             HHTTCCEEEECCTTSSHHHH-HHHHHHTSCCSSCEEEEEECC
T ss_pred             ccCCCEEEEEeCCCCCHHHH-HHHHhccCCcccCCeEEEeCC
Confidence            44568999999999999999 667777665443 55555443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.39  E-value=0.045  Score=54.27  Aligned_cols=32  Identities=28%  Similarity=0.573  Sum_probs=24.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .++.|.||+||||||||..++..+     ++.+|+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~D   39 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGD   39 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECC
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccc
Confidence            489999999999999987776654     24556654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.36  E-value=0.08  Score=47.87  Aligned_cols=37  Identities=24%  Similarity=0.198  Sum_probs=27.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ..+.|+|++|+|||||+.+++...... ..+..++.+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~   67 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV   67 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence            378999999999999977777665433 5566666543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.36  E-value=0.052  Score=49.92  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++.|.|+|||||||+|-.+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999996555443

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=93.31  E-value=0.095  Score=48.92  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=32.3

Q ss_pred             CEEEE-EcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEI-FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I-~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      .++.| .+..|+||||++.+++..+.+.+.+|+++|...
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   41 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            34555 567899999999999999998899999999875

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=93.21  E-value=0.78  Score=43.24  Aligned_cols=117  Identities=14%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             CEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcC----C--CCCChh-hhhhhcccc-cceeecC-C----------
Q 013567          144 RIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDA----E--HAFDPS-YSKALGVDV-ENLIVCQ-P----------  203 (440)
Q Consensus       144 ~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~----E--~~~~~~-~a~~lGv~~-~~l~i~~-~----------  203 (440)
                      ..+.|+|. +|+|||++++.++..+.+.+.++.||-.    .  ...+.. ..+..|... .+.+.+. +          
T Consensus        27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~~  106 (251)
T 3fgn_A           27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHA  106 (251)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHHT
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHHc
Confidence            45777775 7999999999999999999999999862    1  112222 233345431 2333322 2          


Q ss_pred             ----CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          204 ----DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       204 ----~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                          ...+.+.+.++++  ....|+++||....+...  +..+ +.               ....+++..+.+||++...
T Consensus       107 ~~~~~~~~~i~~~~~~l--~~~~D~vlIEGagGl~~p--l~~~-~~---------------~~adla~~l~~pVILV~~~  166 (251)
T 3fgn_A          107 GMALPARDQIVRLIADL--DRPGRLTLVEGAGGLLVE--LAEP-GV---------------TLRDVAVDVAAAALVVVTA  166 (251)
T ss_dssp             TCCCCCHHHHHHHHHTT--CCTTCEEEEECSSSTTCE--EETT-TE---------------EHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCCHHHHHHHHHHH--HhcCCEEEEECCCCCcCC--cCcc-cc---------------hHHHHHHHcCCCEEEEEcC
Confidence                1233444444433  346789999998877631  1110 00               0123456678999998765


Q ss_pred             c
Q 013567          280 R  280 (440)
Q Consensus       280 ~  280 (440)
                      .
T Consensus       167 ~  167 (251)
T 3fgn_A          167 D  167 (251)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.21  E-value=0.073  Score=49.54  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E  180 (440)
                      .+|.++.|.|++||||||++-.+...+.. .+..++++.-|
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre   59 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE   59 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence            36889999999999999996665555555 55566663444

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.20  E-value=0.1  Score=45.22  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -+.|+|++|+|||||..+++
T Consensus        20 ki~v~G~~~~GKSsli~~l~   39 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFM   39 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999944444

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.09  E-value=0.058  Score=49.04  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .+.|.|+|||||||+|-.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999965555433

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.02  E-value=0.17  Score=44.72  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -+.|+|++|+|||||..+++
T Consensus        16 ki~v~G~~~~GKSsli~~l~   35 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFM   35 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999944443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.98  E-value=0.066  Score=47.87  Aligned_cols=31  Identities=32%  Similarity=0.498  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++.|.|++||||||++ +.++...    +..+++..
T Consensus         4 ~i~i~G~~GsGKst~~-~~la~~l----g~~~~d~d   34 (208)
T 3ake_A            4 IVTIDGPSASGKSSVA-RRVAAAL----GVPYLSSG   34 (208)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHHH----TCCEEEHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHhc----CCceeccc
Confidence            8999999999999995 4444433    24455543

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=92.91  E-value=0.14  Score=53.96  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=40.0

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      .+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|+.+++.. .. ..-++|.-
T Consensus       213 ~epl~TGirvID~l~--PigrGqr~~Ifgg~g~GKT~L~~~ia~~-~~-~~v~V~~~  265 (600)
T 3vr4_A          213 DVPMITGQRVIDTFF--PVTKGGAAAVPGPFGAGKTVVQHQIAKW-SD-VDLVVYVG  265 (600)
T ss_dssp             CSBCCCCCHHHHHHS--CCBTTCEEEEECCTTSCHHHHHHHHHHH-SS-CSEEEEEE
T ss_pred             CceecccchhhhccC--CccCCCEEeeecCCCccHHHHHHHHHhc-cC-CCEEEEEE
Confidence            356789999999987  4568999999999999999996655443 22 23456543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=92.90  E-value=0.083  Score=52.40  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++...+.|+||||+|||++|..++..+   +...+.++..
T Consensus        70 ~~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~  106 (376)
T 1um8_A           70 LSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT  106 (376)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred             cCCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence            345578999999999999965554433   4566666643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.88  E-value=0.048  Score=47.61  Aligned_cols=24  Identities=42%  Similarity=0.592  Sum_probs=19.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +|.-+.|+|+||+||||| ++.+.+
T Consensus         3 ~~~ki~ivG~~g~GKStL-l~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSL-LNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHH-HHHHHT
T ss_pred             CCCEEEEECCCCCCHHHH-HHHHhC
Confidence            567899999999999999 555543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=92.86  E-value=0.061  Score=52.65  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      ..++.|.||+|+|||||+..++...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4589999999999999988876553

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=92.84  E-value=0.087  Score=53.40  Aligned_cols=39  Identities=21%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ..-+.|+|++|+|||++...++..+...+..++.+|...
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg   91 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG   91 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            347899999999999997777888888888899998664

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=92.82  E-value=0.1  Score=47.63  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=24.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      |.++.|-|..||||||++ +.+...+..+..+++.
T Consensus         2 ~kFI~~EG~dGsGKsTq~-~~L~~~L~~~~~v~~~   35 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVI-NEVYHRLVKDYDVIMT   35 (205)
T ss_dssp             CEEEEEECCTTSCHHHHH-HHHHHHHTTTSCEEEE
T ss_pred             CCEEEEECCCCCcHHHHH-HHHHHHHHCCCCEEEe
Confidence            568999999999999995 5555544455566554

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=92.79  E-value=0.059  Score=53.03  Aligned_cols=31  Identities=26%  Similarity=0.471  Sum_probs=23.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .++.|+||+|||||||+..++..+     +..+++.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l-----~~~iis~   36 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL-----PCELISV   36 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc-----CCcEEec
Confidence            489999999999999987776543     3455554

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=92.76  E-value=0.11  Score=48.78  Aligned_cols=41  Identities=15%  Similarity=0.203  Sum_probs=34.4

Q ss_pred             CCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567          143 GRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF  183 (440)
Q Consensus       143 G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~  183 (440)
                      +.++.|++ ..|+||||+|.+++..+.+.+.+|+++|.....
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG   59 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            55777665 589999999999999999889999999987543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=92.67  E-value=0.096  Score=51.72  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ++.-+.|+||||+|||++|..++..+   +...+.++.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence            45678999999999999965554443   344555543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.64  E-value=0.28  Score=43.01  Aligned_cols=21  Identities=29%  Similarity=0.268  Sum_probs=16.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li  164 (440)
                      --+.|+|++|+|||||..+++
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~   43 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIA   43 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999954443

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.63  E-value=0.062  Score=51.37  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=23.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .++.|.|+|||||||++-.+....    .+..+++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~   34 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINR   34 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecc
Confidence            478999999999999976655422    24566654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.63  E-value=0.53  Score=40.86  Aligned_cols=19  Identities=26%  Similarity=0.321  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~l  163 (440)
                      -+.|+|++|+|||||.-++
T Consensus        25 ~i~v~G~~~~GKSsli~~l   43 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNAL   43 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999994443

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.58  E-value=0.12  Score=47.01  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             EEEE-EcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          145 IVEI-FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       145 ii~I-~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      ++.| .+..|+||||++.+++..+.+.+ +++.+|....
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q   39 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN   39 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence            3444 56799999999999999999888 9999998753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=92.53  E-value=0.073  Score=52.34  Aligned_cols=21  Identities=48%  Similarity=0.624  Sum_probs=17.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+++|+||||+||||+ +..+.
T Consensus        24 ~~~~i~G~NGsGKS~l-leAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSL-LDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHH-HHHHH
T ss_pred             CeEEEECCCCCCHHHH-HHHHH
Confidence            4999999999999999 66543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=92.39  E-value=0.13  Score=55.15  Aligned_cols=40  Identities=23%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .+|.++.|.|.+||||||++-.+...+...+..++.+|.+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD   89 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   89 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence            3688999999999999999766666555556677777643

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=92.38  E-value=0.045  Score=60.57  Aligned_cols=28  Identities=29%  Similarity=0.503  Sum_probs=25.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      -||+|++++|+|.+||||||||...+..
T Consensus        32 ~iP~~~l~viTGvSGSGKSSLafdtl~a   59 (842)
T 2vf7_A           32 KVPRDALVVFTGVSGSGKSSLAFGTLYA   59 (842)
T ss_dssp             EEESSSEEEEESSTTSSHHHHHTTTHHH
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999999987764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.33  E-value=0.087  Score=47.69  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ...+++|+|++||||||++-. +....    ++.++|.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~-L~~~l----g~~vid~   43 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEI-LKNKY----GAHVVNV   43 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHH-HHHHH----CCEEEEH
T ss_pred             cceEEEEECCCCCCHHHHHHH-HHHhc----CCEEEEC
Confidence            346899999999999999544 43332    3455654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=92.32  E-value=0.16  Score=46.83  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH-hhcC----CcEEEEcC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEV-QKLG----GNAMLVDA  179 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~-~~~~----~~vv~id~  179 (440)
                      .|+.+.+.||+||||||+....+... ...+    .++++...
T Consensus        75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p  117 (235)
T 3llm_A           75 QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQP  117 (235)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEES
T ss_pred             cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEecc
Confidence            57899999999999998755555443 2222    25666654

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=92.30  E-value=0.066  Score=55.04  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=35.5

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      -+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|+.+++..
T Consensus       128 ~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~  170 (464)
T 3gqb_B          128 EQFIQTGISTIDVMN--TLVRGQKLPIFSGSGLPANEIAAQIARQ  170 (464)
T ss_dssp             CCBCBCSCHHHHTTS--CCBTTCBCCEEEETTSCHHHHHHHHHHH
T ss_pred             cccccCcceeeeccc--ccccCCEEEEecCCCCCchHHHHHHHHH
Confidence            457899999999987  4558899999999999999996555444

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=92.27  E-value=0.17  Score=49.63  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=35.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      -.++.+.|..|.||||++.+++..+++.|.+++.+|....
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            4678888999999999999999999999999999998754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.26  E-value=0.11  Score=47.10  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=25.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      ..+.|+|++|+|||||+.+++...... ..+..+.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~   72 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA   72 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence            478899999999999988887765433 4444444

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=92.04  E-value=0.17  Score=45.80  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=30.2

Q ss_pred             EEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ++.|++ ..|+||||++.+++..+.+.+.++++++.
T Consensus         3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp   38 (224)
T 1byi_A            3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence            456666 48999999999999999999999999873

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=92.03  E-value=0.081  Score=50.66  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=18.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      ..+++|+|++||||||+|-.+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999965444

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=92.00  E-value=0.097  Score=52.17  Aligned_cols=27  Identities=26%  Similarity=0.485  Sum_probs=20.1

Q ss_pred             CCCCCE--EEEEcCCCCcHHHHHHHHHHHH
Q 013567          140 LPKGRI--VEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       140 i~~G~i--i~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++|++  +.|.|++|+||||++ +.++..
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~-~~la~~   47 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIA-EELCQI   47 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHH-HHHHHH
Confidence            445555  999999999999995 444443

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=91.99  E-value=0.11  Score=54.74  Aligned_cols=50  Identities=24%  Similarity=0.263  Sum_probs=35.0

Q ss_pred             HHHHHhcCCCC----CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          131 TLDLALGGGLP----KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       131 ~LD~~LgGGi~----~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .....+.-.+|    .+.++.|.|.+||||||+|-.+...+...+..+.+++.+
T Consensus       356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D  409 (546)
T 2gks_A          356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD  409 (546)
T ss_dssp             HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence            34444443443    378999999999999999766665555556667788754

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=91.92  E-value=0.29  Score=49.98  Aligned_cols=38  Identities=13%  Similarity=0.099  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCCcHHH-HHHHHHHHHhhcCCcEEEEcCC
Q 013567          143 GRIVEIFGPESSGKTT-LALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~G~~GsGKTT-LaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++++.+.+|+|||||+ +.+.++..+...+..++++...
T Consensus        19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Pt   57 (451)
T 2jlq_A           19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPT   57 (451)
T ss_dssp             TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCC
Confidence            6788999999999999 5677777777777788888643

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=91.79  E-value=0.11  Score=55.00  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=33.7

Q ss_pred             HHHHhcCCC----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCC
Q 013567          132 LDLALGGGL----PKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAE  180 (440)
Q Consensus       132 LD~~LgGGi----~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E  180 (440)
                      +.+.+.-.+    +.|.++.|.|.+||||||+|-.+...+...+ ..++++|++
T Consensus       381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D  434 (573)
T 1m8p_A          381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD  434 (573)
T ss_dssp             HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence            444443344    3477999999999999999766655554444 567788754

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=91.77  E-value=0.14  Score=53.77  Aligned_cols=53  Identities=23%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      .+.+.||+..+|.++  =+-+|+-..|+|++|+|||+|+.+++.. .. ..-++|.-
T Consensus       202 ~epl~TGirvID~l~--PigrGqr~~Ifg~~g~GKT~l~~~ia~~-~~-~~v~V~~~  254 (578)
T 3gqb_A          202 NTPFLTGMRILDVLF--PVAMGGTAAIPGPFGSGKSVTQQSLAKW-SN-ADVVVYVG  254 (578)
T ss_dssp             CSEECCSCHHHHTTS--CEETTCEEEECCCTTSCHHHHHHHHHHH-SS-CSEEEEEE
T ss_pred             CCcccccchhhhhcc--cccCCCEEeeeCCCCccHHHHHHHHHhc-cC-CCEEEEEE
Confidence            456789999999987  4558999999999999999996655443 22 23455543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.76  E-value=0.63  Score=40.49  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=17.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      +.--+.|+|++|+|||||..+++
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            34568999999999999944443

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=91.69  E-value=0.17  Score=53.98  Aligned_cols=39  Identities=18%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEH  181 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~  181 (440)
                      +.++.|.||||+|||+++..++..+.+ .+..++.....+
T Consensus       195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn  234 (624)
T 2gk6_A          195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN  234 (624)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence            458999999999999998888887776 556666655443

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=91.64  E-value=0.14  Score=47.36  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .+|.++.|.|++||||||++- .+....
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~-~l~~~l   29 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCN-ILYKKL   29 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHH-HHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHH-HHHHHh
Confidence            478999999999999999954 444444

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=91.46  E-value=0.059  Score=54.88  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      ++.|..++|+|+||+||||| ++.+.+.
T Consensus       154 lk~g~~VgLVG~~gAGKSTL-L~~Lsg~  180 (416)
T 1udx_A          154 LMLIADVGLVGYPNAGKSSL-LAAMTRA  180 (416)
T ss_dssp             ECCSCSEEEECCGGGCHHHH-HHHHCSS
T ss_pred             EcCCCEEEEECCCCCcHHHH-HHHHHcC
Confidence            66789999999999999999 7777665

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=91.35  E-value=0.053  Score=60.59  Aligned_cols=28  Identities=43%  Similarity=0.659  Sum_probs=25.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      ||++++++|+|.+|||||+||+..++.-
T Consensus        21 ip~~~l~v~tG~SGSGKSsLafdtl~ae   48 (916)
T 3pih_A           21 IPKNRLVVITGVSGSGKSSLAMDTIYAE   48 (916)
T ss_dssp             EETTSEEEEEESTTSSSHHHHTTTHHHH
T ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            7899999999999999999999888643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=91.34  E-value=0.061  Score=60.17  Aligned_cols=26  Identities=38%  Similarity=0.749  Sum_probs=24.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ||++++++|+|.+|||||+||+..++
T Consensus        41 iP~~~lvv~tG~SGSGKSSLafdtly   66 (972)
T 2r6f_A           41 IPRGKLVVLTGLSGSGKSSLAFDTIY   66 (972)
T ss_dssp             EETTSEEEEEESTTSSHHHHHTTTHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999999998886

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=91.26  E-value=0.11  Score=48.05  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      +|.++.|.|.+||||||++-.+..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            367899999999999999544433

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.05  E-value=0.13  Score=44.20  Aligned_cols=20  Identities=25%  Similarity=0.582  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+.|+|++|+||||| ++.+.
T Consensus         5 ~v~lvG~~gvGKStL-~~~l~   24 (165)
T 2wji_A            5 EIALIGNPNVGKSTI-FNALT   24 (165)
T ss_dssp             EEEEECSTTSSHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHH-HHHHh
Confidence            589999999999999 54444

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=90.98  E-value=0.5  Score=47.97  Aligned_cols=17  Identities=35%  Similarity=0.530  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 013567          145 IVEIFGPESSGKTTLAL  161 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL  161 (440)
                      .++|+|+||+|||||.-
T Consensus         5 ~V~ivG~~nvGKStL~n   21 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFN   21 (436)
T ss_dssp             EEEEECSTTSSHHHHHH
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            68999999999999943

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=90.82  E-value=0.2  Score=47.75  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             CEEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +++.|+ +..|+||||++.+++..+.+.+.+|+.||...
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~   43 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL   43 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            466666 46899999999999999999999999999875

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=90.80  E-value=0.28  Score=44.35  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      ++.|-|..||||||.+-.+...+...+..+++..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            5789999999999995555545555666666554

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.65  E-value=0.73  Score=40.59  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=17.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~l  163 (440)
                      .--+.|+|++|+|||||..++
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l   49 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKL   49 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHH
Confidence            446899999999999994443

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=90.59  E-value=0.5  Score=51.82  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~l  163 (440)
                      +..|+.+.|.||+||||||+.-.+
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~l  129 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQF  129 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHH
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHH
Confidence            345789999999999999963333

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.49  E-value=0.49  Score=41.82  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=16.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li  164 (440)
                      --+.|+|++|+|||||..+++
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            368999999999999954443

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=90.45  E-value=0.13  Score=50.29  Aligned_cols=24  Identities=33%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .|.-+.|.|++|+||||+|+.++.
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            466799999999999999987664

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=90.37  E-value=0.12  Score=45.24  Aligned_cols=20  Identities=45%  Similarity=0.599  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      -+.|+|++|+||||| ++.+.
T Consensus         4 kv~ivG~~gvGKStL-l~~l~   23 (184)
T 2zej_A            4 KLMIVGNTGSGKTTL-LQQLM   23 (184)
T ss_dssp             EEEEESCTTSSHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHH-HHHHh
Confidence            478999999999999 44443

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=90.31  E-value=0.13  Score=48.42  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLAL  161 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL  161 (440)
                      .++.++.|.|++||||||++-
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~   42 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVN   42 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHH
Confidence            467899999999999999943

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.26  E-value=0.17  Score=47.21  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      -.+|.|+|||||||+|-.++..+     +..++++
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~   39 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKF-----GIPQIST   39 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH-----TCCEECH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHh-----CCCeeec
Confidence            46899999999999976665544     3445554

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=90.22  E-value=0.076  Score=55.40  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +.+| ++.|+|+||+||||| +..+..+
T Consensus        58 f~~g-~n~i~G~NGaGKS~l-leAl~~l   83 (517)
T 4ad8_A           58 LGGG-FCAFTGETGAGKSII-VDALGLL   83 (517)
T ss_dssp             CCCS-EEEEEESHHHHHHHH-THHHHHH
T ss_pred             cCCC-eEEEEcCCCCCHHHH-HHHHHHH
Confidence            4566 999999999999999 7777555

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=90.20  E-value=0.12  Score=50.18  Aligned_cols=34  Identities=12%  Similarity=-0.029  Sum_probs=23.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      |.-+.|+||||+|||+||..++ ...  +.....+..
T Consensus        46 ~~~vll~G~pGtGKT~la~~la-~~~--~~~~~~i~~   79 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLA-KTM--DLDFHRIQF   79 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHH-HHT--TCCEEEEEC
T ss_pred             CCeEEEECCCCCcHHHHHHHHH-HHh--CCCeEEEec
Confidence            3478999999999999965544 433  334555554

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=90.19  E-value=0.11  Score=50.33  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=18.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +..++|+|+||+||||| ++.+.+
T Consensus         8 ~~~VaIvG~~nvGKSTL-ln~L~g   30 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTL-LNKLLG   30 (301)
T ss_dssp             EEEEEEECSSSSSHHHH-HHHHHT
T ss_pred             CCEEEEECCCCCCHHHH-HHHHHC
Confidence            34899999999999999 555543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.19  E-value=0.16  Score=45.87  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +.++.|.|++||||||++- .+....    +..+++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~-~l~~~~----g~~~~~~   34 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAK-RVASEL----SMIYVDT   34 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHH-HHHHHT----TCEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHH-HHHHhc----CCceecC
Confidence            3579999999999999954 443332    3445554

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=90.04  E-value=0.18  Score=55.66  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEH  181 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~  181 (440)
                      +.++.|.||||+|||++...++..+.+ .+..++.....+
T Consensus       375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn  414 (802)
T 2xzl_A          375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN  414 (802)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence            568999999999999998888877765 566777665443

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=89.99  E-value=0.16  Score=49.73  Aligned_cols=24  Identities=38%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      |.-+.|.|++|+||||+|+.++..
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            778999999999999998887763

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=89.97  E-value=0.16  Score=50.49  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=18.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+++|+|+||+|||++ +..+.-
T Consensus        26 gl~vi~G~NGaGKT~i-leAI~~   47 (371)
T 3auy_A           26 GIVAIIGENGSGKSSI-FEAVFF   47 (371)
T ss_dssp             EEEEEEECTTSSHHHH-HHHHHH
T ss_pred             CeEEEECCCCCCHHHH-HHHHHH
Confidence            4999999999999999 666553

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=89.95  E-value=0.17  Score=44.05  Aligned_cols=20  Identities=25%  Similarity=0.582  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+.|+|++|+||||| ++.+.
T Consensus         9 ~i~lvG~~gvGKStL-~~~l~   28 (188)
T 2wjg_A            9 EIALIGNPNVGKSTI-FNALT   28 (188)
T ss_dssp             EEEEECSTTSSHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHH-HHHHh
Confidence            689999999999999 44443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=89.86  E-value=0.18  Score=42.70  Aligned_cols=20  Identities=15%  Similarity=0.273  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -+.|+|++|+|||||.-+++
T Consensus         7 ~i~v~G~~~~GKssl~~~l~   26 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYC   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            47899999999999954444

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=89.61  E-value=0.3  Score=48.80  Aligned_cols=41  Identities=10%  Similarity=0.065  Sum_probs=34.0

Q ss_pred             CCCCEEEEE-cCCCCcHHHHHHHHHHHHh------hcCCcEEEEcCCC
Q 013567          141 PKGRIVEIF-GPESSGKTTLALHAIAEVQ------KLGGNAMLVDAEH  181 (440)
Q Consensus       141 ~~G~ii~I~-G~~GsGKTTLaL~li~~~~------~~~~~vv~id~E~  181 (440)
                      ..+.++.|+ |..|+||||++.+++..++      ..+.+|+++|...
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~  153 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP  153 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence            346677777 5699999999999999887      4688999999874

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=89.57  E-value=0.18  Score=49.95  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=32.7

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567          145 IVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA  182 (440)
Q Consensus       145 ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~  182 (440)
                      ++.|+ +..|+||||++.+++..+++.+.+|++||....
T Consensus         3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q   41 (361)
T 3pg5_A            3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ   41 (361)
T ss_dssp             EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence            45555 579999999999999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=89.53  E-value=0.19  Score=42.24  Aligned_cols=20  Identities=25%  Similarity=0.498  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -+.++|++|+|||||..+++
T Consensus         5 ~i~v~G~~~~GKssl~~~l~   24 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999954444

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=89.51  E-value=0.2  Score=43.84  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      +.--+.|+|++|+|||||..+++
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34478999999999999944443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.51  E-value=0.13  Score=52.35  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      ++|+|+||+||||| ++.+.+...
T Consensus        34 I~lvG~sGaGKSTL-ln~L~g~~~   56 (418)
T 2qag_C           34 LMVVGESGLGKSTL-INSLFLTDL   56 (418)
T ss_dssp             EEEECCTTSSHHHH-HHHHTTCCC
T ss_pred             EEEECCCCCcHHHH-HHHHhCCCC
Confidence            59999999999999 788777654

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=89.48  E-value=0.34  Score=53.40  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E  180 (440)
                      +.++.|.||||+|||++...++..+.. .+..++.....
T Consensus       371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t  409 (800)
T 2wjy_A          371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS  409 (800)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence            468999999999999998888887776 45566655443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=89.45  E-value=0.24  Score=51.01  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ...-+.|+||||+|||+++..++..+.
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            344678999999999999666655554

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=89.41  E-value=0.61  Score=49.77  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCCCcHHHH-HHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTL-ALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTL-aL~li~~~~~~~~~vv~id~E  180 (440)
                      ..|+.+.+.+|+|||||+. ++.++..+...+..++++...
T Consensus       184 ~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~Pt  224 (618)
T 2whx_A          184 RKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPT  224 (618)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcCh
Confidence            4688999999999999996 577887777767788888643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=89.36  E-value=0.21  Score=43.49  Aligned_cols=22  Identities=41%  Similarity=0.457  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      -+.|+|++|+||||| ++.+.+.
T Consensus        16 ki~vvG~~~~GKssL-~~~l~~~   37 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTN-LKWIYSK   37 (198)
T ss_dssp             EEEEECSTTSSHHHH-HHHHHHT
T ss_pred             EEEEECCCCCCHHHH-HHHHHhh
Confidence            478999999999999 4777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1xp8a1	268	c.37.1.11 (A:15-282) RecA protein, ATPase-domain {	1e-107
d1mo6a1	269	c.37.1.11 (A:1-269) RecA protein, ATPase-domain {M	1e-105
d1u94a1	263	c.37.1.11 (A:6-268) RecA protein, ATPase-domain {E	1e-101
d1szpa2	251	c.37.1.11 (A:145-395) DNA repair protein Rad51, ca	5e-34
d1pzna2	254	c.37.1.11 (A:96-349) DNA repair protein Rad51, cat	1e-33
d1v5wa_	258	c.37.1.11 (A:) Meiotic recombination protein DMC1/	1e-33
d2i1qa2	258	c.37.1.11 (A:65-322) DNA repair protein Rad51, cat	5e-32
d1n0wa_	242	c.37.1.11 (A:) DNA repair protein Rad51, catalytic	6e-26
d1u94a2	60	d.48.1.1 (A:269-328) RecA protein, C-terminal doma	1e-20
d1xp8a2	59	d.48.1.1 (A:283-341) RecA protein, C-terminal doma	1e-20
d1tf7a2	242	c.37.1.11 (A:256-497) Circadian clock protein KaiC	5e-20
d1mo6a2	60	d.48.1.1 (A:270-329) RecA protein, C-terminal doma	2e-19
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	7e-15
d1tf7a1	242	c.37.1.11 (A:14-255) Circadian clock protein KaiC	1e-14
d1okkd2	207	c.37.1.10 (D:97-303) GTPase domain of the signal r	0.001
d1cr2a_	277	c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),	0.002

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Length = 268

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  316 bits (810), Expect = e-107
 Identities = 146/266 (54%), Positives = 198/266 (74%), Gaps = 2/266 (0%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           +R +A++ AM+ I  +FGKGS+ +LG+     V+   +G L+LDLALG GG+P+GRI EI
Sbjct: 3   ERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEI 62

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPES GKTTLAL  +A+ QK GG    +DAEHA DP Y++ALGV+ + L+V QPDNGE 
Sbjct: 63  YGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ 122

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEI + + RSGAID++ VDSV+ALTPRAEIEG++G    GLQARLMSQALRK++   SK
Sbjct: 123 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK 182

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
            G   IF+NQ+R KIGV YGNPE T+GG ALKF+ASVRL++R  G+   V G++ V   V
Sbjct: 183 TGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKV-GNDAVANTV 241

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGV 354
           +++  K+KV+ P+K+ E  +++G+G 
Sbjct: 242 KIKTVKNKVAAPFKEVELALVYGKGF 267

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  311 bits (797), Expect = e-105
 Identities = 152/266 (57%), Positives = 202/266 (75%), Gaps = 3/266 (1%)

Query: 90  DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
           DR++AL+ A+  I  S+GKGSV RLG      +   P+G + LD+ALG GGLP+GR++EI
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEI 65

Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
           +GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K LGVD ++L+V QPD GE 
Sbjct: 66  YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125

Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
           ALEIAD + RSGA+D++ +DSV+AL PRAE+EGE+G   +GLQARLMSQALRKM+G  + 
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185

Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328
           +G T IF+NQ+R KIGV +G+PE T+GG ALKF+ASVR+++R    +K   G   VG R 
Sbjct: 186 SGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLK--DGTNAVGNRT 243

Query: 329 RVRVQKSKVSRPYKQAEFEIIFGEGV 354
           RV+V K+K   P+KQAEF+I++G+G+
Sbjct: 244 RVKVVKNKCLAPFKQAEFDILYGKGI 269

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Length = 263

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

 Score =  300 bits (770), Expect = e-101
 Identities = 156/265 (58%), Positives = 200/265 (75%), Gaps = 3/265 (1%)

Query: 91  RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIF 149
           +Q+AL AA+  I   FGKGS+ RLG      VET  +G L+LD+ALG GGLP GRIVEI+
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 60

Query: 150 GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209
           GPESSGKTTL L  IA  Q+ G     +DAEHA DP Y++ LGVD++NL+  QPD GE A
Sbjct: 61  GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 120

Query: 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269
           LEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG   +GL AR+MSQA+RK++GN  ++
Sbjct: 121 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 180

Query: 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329
              LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR  G +K  +G+  VG   R
Sbjct: 181 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSETR 238

Query: 330 VRVQKSKVSRPYKQAEFEIIFGEGV 354
           V+V K+K++ P+KQAEF+I++GEG+
Sbjct: 239 VKVVKNKIAAPFKQAEFQILYGEGI 263

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (314), Expect = 5e-34
 Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 37/253 (14%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV------QKLGGNAM 175
           +    +G   LD  LGGG+  G I E+FG   +GK+ L                  G  +
Sbjct: 13  LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCL 72

Query: 176 LVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMALEIAD---RMCRSGAIDL 224
            +D E  F P      ++  G+D      N+   +  N +  L + D   +M       L
Sbjct: 73  YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 132

Query: 225 ICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284
           I VDSV AL          G  ++  +   +++ +R +   A + G  ++  NQ+  ++ 
Sbjct: 133 IVVDSVMALYR----TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVD 188

Query: 285 ---VYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 341
               +  +P+  +GG  +   ++ RL  +           +  G +   +V  S    P 
Sbjct: 189 GGMAFNPDPKKPTGGNIMAHSSTTRLGFK-----------KGKGCQRLCKVVDSPCL-PE 236

Query: 342 KQAEFEIIFGEGV 354
            +  F  I+ +GV
Sbjct: 237 AECVFA-IYEDGV 248

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  124 bits (312), Expect = 1e-33
 Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 38/249 (15%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV------QKLGGNAM 175
           +    +G  +LD  LGGG+    I E+FG   SGKT LA      V        L G+ +
Sbjct: 15  IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 74

Query: 176 LVDAEHAFDPSYSKAL----GVDVE----NLIVCQPDNGEMALEI--------ADRMCRS 219
            +D E+ F P   + +    G+D +    ++ V +  N    + +         + +   
Sbjct: 75  WIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD 134

Query: 220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279
             + L+ VDS+++   R+E  G      +  + + +++ L  +   A+     +   NQ+
Sbjct: 135 RPVKLLIVDSLTSHF-RSEYIGR---GALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 190

Query: 280 RYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR 339
           + +   ++G+P    GG  L   A++R+ +R           +  G +   R+  +    
Sbjct: 191 QARPDAFFGDPTRPIGGHILAHSATLRVYLR-----------KGKGGKRIARLIDAP-HL 238

Query: 340 PYKQAEFEI 348
           P  +A F I
Sbjct: 239 PEGEAVFSI 247

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-33
 Identities = 52/258 (20%), Positives = 94/258 (36%), Gaps = 43/258 (16%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML----- 176
           V    +G    D  LGGG+    I E FG   +GKT L+       Q  G          
Sbjct: 16  VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKII 75

Query: 177 -VDAEHAFDPSYSKALGVDV--------ENLIVCQPDNGEMALEIADRMC-----RSGAI 222
            +D E+ F P   + +            +N++  +    E  +E+ D +       +G  
Sbjct: 76  FIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIF 135

Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
            L+ +DS+ AL          G  ++  + + ++Q L ++   + +    +   NQ+   
Sbjct: 136 KLLIIDSIMALFRV----DFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 191

Query: 283 IGV---YYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR 339
            G    +  +P+   GG  L   ++ R+ +R                R  +R+ K   S 
Sbjct: 192 PGATMTFQADPKKPIGGHILAHASTTRISLR--------------KGRGELRIAKIYDSP 237

Query: 340 --PYKQAEFEIIFGEGVS 355
             P  +A F I    G+ 
Sbjct: 238 EMPENEATFAIT-AGGIG 254

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score =  120 bits (301), Expect = 5e-32
 Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 36/251 (14%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------------ 169
           V    +    LD  LGGGL    + E  G   SGKT +   +   +Q             
Sbjct: 13  VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVS 72

Query: 170 ----LGGNAMLVDAEHAFDP----SYSKALGVDVE----NLIVCQPDNGEMALEIADRMC 217
                   A+ +D E  F P      ++  G+D +    N  V +  N +M +  A+++ 
Sbjct: 73  KGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIE 132

Query: 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLN 277
                       V             G  ++  + + + + +  ++  A    C ++  N
Sbjct: 133 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 192

Query: 278 QIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKV 337
           Q+  K   ++G  E   GG  +   A+ R  +R           +  G +   ++  S  
Sbjct: 193 QVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVR-----------KGKGDKRVAKLYDSP- 240

Query: 338 SRPYKQAEFEI 348
             P  +A F I
Sbjct: 241 HLPDAEAIFRI 251

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 6e-26
 Identities = 52/251 (20%), Positives = 82/251 (32%), Gaps = 31/251 (12%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAM 175
           +    +G   LD  L GG+  G I E+FG   +GKT +        Q         G AM
Sbjct: 2   IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAM 61

Query: 176 LVDAEHAFDPSYSKALGVD-----------VENLIVCQPDNGEMALEIADRMCRSGAIDL 224
            +D E  F P    A+              V        D+    L  A  M       L
Sbjct: 62  YIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYAL 121

Query: 225 ICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284
           + VDS +AL             +    AR +   L +++     A      +        
Sbjct: 122 LIVDSATALYRTDYSGRGELSARQMHLARFLRM-LLRLADEFGVAVVITNQVVAQVDGAA 180

Query: 285 VYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQA 344
           ++  +P+   GG  +   ++ RL +R           +  G     ++  S    P  +A
Sbjct: 181 MFAADPKKPIGGNIIAHASTTRLYLR-----------KGRGETRICKIYDS-PCLPEAEA 228

Query: 345 EFEIIFGEGVS 355
            F  I  +GV 
Sbjct: 229 MFA-INADGVG 238

>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 60

class: Alpha and beta proteins (a+b)
fold: Anti-LPS factor/recA domain
superfamily: RecA protein, C-terminal domain
family: RecA protein, C-terminal domain
domain: RecA protein, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 83.1 bits (206), Expect = 1e-20
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 355 SKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
           +  G ++D      ++ + GAWYSY  +++GQG+  A  +L+DNP   +EIEK VR ++
Sbjct: 1   NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 59

>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Length = 59

class: Alpha and beta proteins (a+b)
fold: Anti-LPS factor/recA domain
superfamily: RecA protein, C-terminal domain
family: RecA protein, C-terminal domain
domain: RecA protein, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 21/58 (36%), Positives = 40/58 (68%)

Query: 356 KLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
           +L  ++  A  MDI+ + G++YSYGD+R+GQG++K + Y+ + P +++EI   V + +
Sbjct: 1   QLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRVMAAI 58

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 86.5 bits (213), Expect = 5e-20
 Identities = 44/234 (18%), Positives = 74/234 (31%), Gaps = 13/234 (5%)

Query: 126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 185
            SG + LD   GGG  K  I+   G   +GKT L    +         A+L   E +   
Sbjct: 9   SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ 68

Query: 186 SYSKA--LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDL-ICVDSVSALTPRAEIEGE 242
               A   G+D E +         + +  A          L I    ++   P       
Sbjct: 69  LLRNAYSWGMDFEEME----RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDS 124

Query: 243 IGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEV----TSGGIA 298
           +     G+      Q +  ++G A +   T +F N     +G +          T   I 
Sbjct: 125 LSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 184

Query: 299 LKFFASVRLEIRSTGKIKSVKGDEDVGVRV-RVRVQKSKVSRPYKQAEFEIIFG 351
           L++        R+    K      D  +R   +  +   +   ++  E  II G
Sbjct: 185 LQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFE-RIISG 237

>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 60

class: Alpha and beta proteins (a+b)
fold: Anti-LPS factor/recA domain
superfamily: RecA protein, C-terminal domain
family: RecA protein, C-terminal domain
domain: RecA protein, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 79.7 bits (197), Expect = 2e-19
 Identities = 18/59 (30%), Positives = 37/59 (62%)

Query: 355 SKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
           S+ G ++D      ++ + GAW++Y  ++LGQG++ A  +L +N  + +EIEK ++  +
Sbjct: 1   SREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKL 59

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 72.4 bits (176), Expect = 7e-15
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 34/245 (13%)

Query: 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEV----------QKLGGNAMLVDAEH------ 181
             +  G +  +  P  +GK+ LAL   A++          +   G  + + AE       
Sbjct: 24  PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIH 83

Query: 182 ----AFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRA 237
               A     S      V + ++ QP  G +   +A                +   T R 
Sbjct: 84  HRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRR 143

Query: 238 EIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVT---S 294
               E            M+Q + +M   A+  GC+++FL+    K     G  +      
Sbjct: 144 FHIEEENASGP------MAQVIGRMEAIAADTGCSIVFLHHAS-KGAAMMGAGDQQQASR 196

Query: 295 GGIALKFFASVRLEIRSTGKIKSVK---GDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFG 351
           G   L      +  + S    ++ +    D+     VR  V K+    P+    F    G
Sbjct: 197 GSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDG 256

Query: 352 EGVSK 356
            GV K
Sbjct: 257 -GVLK 260

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 70.8 bits (172), Expect = 1e-14
 Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 15/236 (6%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAE 180
           +    +     D    GGLP GR   + G   +GKT  ++  +           + V  E
Sbjct: 5   IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 64

Query: 181 HAFDPSYSKA--LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLI-CVDSVSALTPRA 237
                    A   G D+  L+         A    +     G  DL   ++ ++    + 
Sbjct: 65  ETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKY 124

Query: 238 EIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGI 297
                       +  +  + ++ +       A    I    +     +    P    G  
Sbjct: 125 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVE 184

Query: 298 ALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEG 353
                  V L     G+            R  + + K + +  + + E+     + 
Sbjct: 185 EFVSDNVVILRNVLEGE----------RRRRTLEILKLRGT-SHMKGEYPFTITDH 229

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 141 PKGRIVEIFGPESSGKTT----LALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVE 196
           PKGR+V + G    GKTT    L  +     +K+   A                  + + 
Sbjct: 4   PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP 63

Query: 197 NLIVCQPDNGEMALEIADRMCRSGAIDLICVD 228
            +   +  +       A +  ++   DL+ VD
Sbjct: 64  VIQGPEGTDPAALAYDAVQAMKARGYDLLFVD 95

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALH 162
           V    SGC  ++    G    G ++ +      GK+T    
Sbjct: 15  VGLLFSGCTGINDKTLG-ARGGEVIMVTSGSGMGKSTFVRQ 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	100.0
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	100.0
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	100.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	99.93
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	99.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	99.92
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	99.92
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	99.91
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	99.9
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	99.89
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	99.87
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	99.75
d1u94a2	60	RecA protein, C-terminal domain {Escherichia coli	99.65
d1mo6a2	60	RecA protein, C-terminal domain {Mycobacterium tub	99.64
d1xp8a2	59	RecA protein, C-terminal domain {Deinococcus radio	99.63
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.57
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.55
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.55
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.53
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.53
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.53
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.52
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.47
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.43
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.41
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.41
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.34
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.31
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.29
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.25
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.19
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.14
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.07
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.06
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.8
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.32
d1okkd2	207	GTPase domain of the signal recognition particle r	98.13
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.1
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.07
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.95
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.94
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.79
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.7
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.62
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.6
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.48
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.25
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.19
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.0
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.0
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	96.91
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	96.9
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.84
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.8
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.78
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.77
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.67
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	96.67
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.67
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.61
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.6
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.59
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	96.57
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.53
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.51
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	96.5
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.48
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.47
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.45
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.4
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.36
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.34
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.32
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.3
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	96.29
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.28
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.28
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.22
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.22
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.21
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.21
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.17
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.14
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.13
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.12
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.09
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.07
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.06
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.02
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.01
d1ofux_	119	Hypothetical protein PA3008 {Pseudomonas aeruginos	95.91
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.91
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.76
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.76
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.76
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.74
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.72
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.71
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.52
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.5
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.49
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.45
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.42
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.37
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.33
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.3
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	95.21
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.2
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.15
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.15
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.15
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.1
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.08
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.08
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.96
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.95
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.92
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.91
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.89
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.88
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.82
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.8
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.79
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.74
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.74
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.73
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.69
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.67
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.5
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.49
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.44
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.42
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.35
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.3
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.28
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.15
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.15
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.14
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.94
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	93.82
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.81
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.78
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.75
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.63
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.6
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.57
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.53
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.51
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	93.41
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.39
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.35
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.2
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.2
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.17
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.13
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.11
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.85
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.85
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.76
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.72
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.68
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.61
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.52
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.37
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.27
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.19
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.1
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.05
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.03
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	91.89
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.86
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.56
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.41
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.36
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.01
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.0
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	90.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.96
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	90.81
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	90.5
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	90.2
d2fh5b1	207	Signal recognition particle receptor beta-subunit	89.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.95
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	89.64
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	89.63
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.54
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.54
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	89.44
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	89.36
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.35
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.17
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.06
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	88.98
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.97
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	88.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	88.8
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	88.78
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.73
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	88.65
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	88.64
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.59
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	88.59
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	88.49
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	88.38
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	88.3
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	88.15
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	88.09
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	88.03
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	87.98
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	87.96
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.91
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	87.82
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	87.75
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	87.74
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	87.43
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	87.35
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	87.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	87.24
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	87.21
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	87.06
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.01
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	86.9
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	86.88
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	86.76
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	86.72
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	86.7
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	86.45
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	86.38
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	86.31
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	86.12
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	86.11
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	85.77
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	85.59
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.52
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	85.48
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	85.35
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.12
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	84.98
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	84.94
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	84.92
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	84.71
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	84.61
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	84.56
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	84.52
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	84.18
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	83.87
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	82.63
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.03
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	82.03
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	81.84
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	81.36
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	81.32
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	81.03
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.0
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	80.23
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.01

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.7e-49  Score=383.86  Aligned_cols=266  Identities=55%  Similarity=0.922  Sum_probs=226.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567           89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus        89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++.+.++.++.+|+++||++.++.++......+++||||++.||.+|| ||||.|++++|+||+|+||||||++++..+
T Consensus         2 ~~~~~~~~~~~~~i~k~~g~~~~~~~~~~~~~~~~~i~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1           2 KERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCcceEECCCcCCCCCCeEcCCCHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHH
Confidence            4688999999999999999999998888888899999999999999997 999999999999999999999999999999


Q ss_pred             hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567          168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ  247 (440)
Q Consensus       168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q  247 (440)
                      +++++.|+|||+|+++++.+++++|++++++++.++.+.|+.+++++.++++..+++|||||+++++|+.+++++.++.+
T Consensus        82 qk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~  161 (268)
T d1xp8a1          82 QKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSL  161 (268)
T ss_dssp             HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------
T ss_pred             HhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhcCCCcEEEEecccccccHHHHcccccchh
Confidence            99999999999999999999999999999999999999999999999999988999999999999999999998887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567          248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR  327 (440)
Q Consensus       248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~  327 (440)
                      .+.++|.++.+++.|..++.+++++||+|||++.+++.+++++..+.||++|.|++++|+++++....++ .+++.+|++
T Consensus       162 ~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~g~~~g~~~~~~GG~al~~~ss~rl~l~k~~~~~k-~~~~~iG~~  240 (268)
T d1xp8a1         162 PGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTK-VGNDAVANT  240 (268)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEESCCC-------CEEE
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeeccccccCcceeecccchhhhceeEEEEEEecCcccc-cCCceEEEE
Confidence            7889999999999999999999999999999999999999999999999999999999999998754432 567789999


Q ss_pred             EEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567          328 VRVRVQKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      ++++++|||+.||++.++|.|.|++|||
T Consensus       241 v~~kv~Knr~~~p~~~~~~~i~~~~GiD  268 (268)
T d1xp8a1         241 VKIKTVKNKVAAPFKEVELALVYGKGFD  268 (268)
T ss_dssp             EEEEEEEESSSCCCCEEEEEEETTTEEC
T ss_pred             EEEEEEECCcCCCCCEEEEEEecCCCCC
Confidence            9999999999999999999999999985

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.6e-49  Score=377.98  Aligned_cols=262  Identities=60%  Similarity=0.987  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567           91 RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus        91 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +++.|++++.+|+|+||++.++.+++.....+++||||++.||.+|| ||||+|.+++|+||||+||||||++++.++++
T Consensus         1 ~~~~~~~~~~~i~k~~g~~~~~~~~~~~~~~~~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~   80 (263)
T d1u94a1           1 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR   80 (263)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhCCcceEECCcccCCCCCeEccCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence            46889999999999999999999988888889999999999999997 99999999999999999999999999999999


Q ss_pred             cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567          170 LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG  249 (440)
Q Consensus       170 ~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~  249 (440)
                      ++..++|||+|+++++.+++++|++++++++.++.+.|+.++.++.+.+++.+++|||||+++++++.+++++.++.+.+
T Consensus        81 ~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~  160 (263)
T d1u94a1          81 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG  160 (263)
T ss_dssp             TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------C
T ss_pred             CCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhcCCCCEEEEECccccccchhcccccccchHH
Confidence            99999999999999999999999999999999999999999999999988999999999999999888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEE
Q 013567          250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR  329 (440)
Q Consensus       250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~  329 (440)
                      .+++.++.++++|..++++++++||++||++.+++.+++++..+.||++|.|++++|+++++....|  ++++.+|++++
T Consensus       161 ~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~~~~~~GG~al~~~~~~rl~l~k~~~~k--~g~~~iG~~~r  238 (263)
T d1u94a1         161 LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSETR  238 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEE--SSSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhccCceEEEEEEEEeccccccCCCccccccchhheeeEEEEEEEeccccc--cCCceeeeEEE
Confidence            8899999999999999999999999999999999999999999999999999999999999988777  67788999999


Q ss_pred             EEEeeccCCCCCceEEEEEEeCCCc
Q 013567          330 VRVQKSKVSRPYKQAEFEIIFGEGV  354 (440)
Q Consensus       330 v~v~Knr~~~p~~~~~~~i~~~~Gi  354 (440)
                      ++++|||+.||+..++|.|.|++||
T Consensus       239 ~~v~Knr~~~p~~~~~f~i~~~~GI  263 (263)
T d1u94a1         239 VKVVKNKIAAPFKQAEFQILYGEGI  263 (263)
T ss_dssp             EEEEEESSBCSCCEEEEEEETTTEE
T ss_pred             EEEEeCCCCCCCCEEEEEEEcCCCC
Confidence            9999999999999999999999996

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.9e-48  Score=376.33  Aligned_cols=263  Identities=58%  Similarity=0.988  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567           90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus        90 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      ++.++++.++.+|+++||++.++.+++.....++.||||++.||.+|| ||+|.|++++|+||||+||||||++++..++
T Consensus         6 ~~~k~~~~~~~~i~k~~g~~~i~~~~~~~~~~~~~i~TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q   85 (269)
T d1mo6a1           6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ   85 (269)
T ss_dssp             THHHHHHHHHHHHHHHHCTTSSCCTTCCCCCCSCCBCCSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCcceEECCCccCCccceEccCCHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence            478899999999999999999999988888889999999999999998 9999999999999999999999999999999


Q ss_pred             hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhH
Q 013567          169 KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQI  248 (440)
Q Consensus       169 ~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~  248 (440)
                      +.+..|+|||+|+.+++.+++++|+|+++++++++.+.|+++++++.+++++.+++|||||+++++|+.+++++.++.++
T Consensus        86 ~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~  165 (269)
T d1mo6a1          86 AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHV  165 (269)
T ss_dssp             HTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTTCEEEEEEECSTTCCCHHHHC-------C
T ss_pred             cCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEecccccccHHHhccccccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998999988888788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEE
Q 013567          249 GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV  328 (440)
Q Consensus       249 ~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~  328 (440)
                      +.+++.++..+++|..++.+.++++|+|||++++++.+|+++..+.||++|.|++++|+++++.+.+|  ++++++|+++
T Consensus       166 ~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~~~~~~GG~al~~~ss~rl~l~k~~~~k--dg~~~iG~~~  243 (269)
T d1mo6a1         166 GLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLK--DGTNAVGNRT  243 (269)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------CTTHHHHHHHCSEEEEEEEEECCB--CSSSBCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhhheeeccCccccCCceecccccceeeeeeEEEEEEecceec--cCCceEEEEE
Confidence            88999999999999999999999999999999999999999999999999999999999999988888  6778899999


Q ss_pred             EEEEeeccCCCCCceEEEEEEeCCCc
Q 013567          329 RVRVQKSKVSRPYKQAEFEIIFGEGV  354 (440)
Q Consensus       329 ~v~v~Knr~~~p~~~~~~~i~~~~Gi  354 (440)
                      +++++|||..||+..+.|.|.|++||
T Consensus       244 ~~kv~Knr~~~p~~~a~f~I~~~~GI  269 (269)
T d1mo6a1         244 RVKVVKNKCLAPFKQAEFDILYGKGI  269 (269)
T ss_dssp             EEEEEEESSSCSCEEEEEEEETTTEE
T ss_pred             EEEEEECCCCCCCCEEEEEEEeCCcC
Confidence            99999999999999999999999996

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=1.8e-25  Score=210.10  Aligned_cols=218  Identities=24%  Similarity=0.394  Sum_probs=152.5

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChhhhhh----
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPSYSKA----  190 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~~a~~----  190 (440)
                      .+++||||++.||.+|+||||+|++++|+||||+||||||+|++.+.+.      .+..++|++.+...++...+.    
T Consensus        14 ~i~ri~TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (254)
T d1pzna2          14 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN   93 (254)
T ss_dssp             TCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHT
T ss_pred             CCCeECCCCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999874      368899999999888764433    


Q ss_pred             hccccc----ceeecCCCCHHHHHHHHHH--------HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567          191 LGVDVE----NLIVCQPDNGEMALEIADR--------MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA  258 (440)
Q Consensus       191 lGv~~~----~l~i~~~~~~ee~l~~i~~--------l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~  258 (440)
                      .+++.+    ...+............+..        ......++++++|++..++. .+..   .........+.+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viDs~~~~~~-~~~~---~~~~~~~~~~~~~~~  169 (254)
T d1pzna2          94 RGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYI---GRGALAERQQKLAKH  169 (254)
T ss_dssp             TTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH-HHCC---STTTHHHHHHHHHHH
T ss_pred             cCCChHHhhhhhhhhhhccchhHHHHHHhhhhhhHHHHhhccCceeEeecchhheee-hhhc---ccchhhhhHHHHHHH
Confidence            344432    2223333333332222111        12335678999999998863 2222   222333455667788


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS  338 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~  338 (440)
                      +..+..++...++++++++|.+...+.+++....+.||..|.+.++.++.+++.+           +.++.++|.|+|..
T Consensus       170 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----------~~~R~~~v~K~R~~  238 (254)
T d1pzna2         170 LADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGK-----------GGKRIARLIDAPHL  238 (254)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEEEEECT-----------TSEEEEEESCSSSS
T ss_pred             HHHHHHHhhccceEEEecceEeeccCcccCCceeecCceeehhhceEEEEEEecC-----------CCeEEEEEEECCCC
Confidence            8888889999999999999999888877777888899999999999999998742           23578999999988


Q ss_pred             CCCceEEEEEEeCCCcc
Q 013567          339 RPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       339 ~p~~~~~~~i~~~~Gi~  355 (440)
                      |+. ..+|+|. ++||.
T Consensus       239 ~~~-~~~f~It-~~Gi~  253 (254)
T d1pzna2         239 PEG-EAVFSIT-EKGIE  253 (254)
T ss_dssp             CCS-EEEEEEE-TTEEE
T ss_pred             CCe-EEEEEEC-CCCcc
Confidence            764 6789997 88873

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-25  Score=208.02  Aligned_cols=219  Identities=24%  Similarity=0.398  Sum_probs=155.9

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChhhhhhh---
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPSYSKAL---  191 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~~a~~l---  191 (440)
                      .+.+||||++.||++|+||||+|++++|+|+||+|||+||++++.+++..      ...++|++.+..+...+.+.+   
T Consensus        15 ~~~ri~TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (258)
T d1v5wa_          15 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR   94 (258)
T ss_dssp             GCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred             CCceecCCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHHhh
Confidence            46689999999999999999999999999999999999999999987653      346899999998877543332   


Q ss_pred             -cccc----cceeecCCCCHHHHHHHHHHH-----HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHH
Q 013567          192 -GVDV----ENLIVCQPDNGEMALEIADRM-----CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRK  261 (440)
Q Consensus       192 -Gv~~----~~l~i~~~~~~ee~l~~i~~l-----~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~  261 (440)
                       +.+.    .++.+.++.+.+++.+.+..+     .+...++++++|++.++.. ....   +..........+++++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~-~~~~---~~~~~~~~~~~l~~~~~~  170 (258)
T d1v5wa_          95 FNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR-VDFS---GRGELAERQQKLAQMLSR  170 (258)
T ss_dssp             TTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH-HHCC---GGGCHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhcccccccCcHHHHHHHHHHHHHHhhhhccCceEEEeeehhhhhh-cccc---CCcchhHHHHHHHHHHHH
Confidence             3332    456666676666655544333     1234578999999998863 2222   122233456678889999


Q ss_pred             HHHHHHhcCCEEEEEeccccccccc---cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVY---YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS  338 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~---~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~  338 (440)
                      |..+++++++++++++|.+...+..   ......+.+|..|.++++.++.+++.+           +..+.++|.|+|..
T Consensus       171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~-----------~~~R~l~i~K~r~~  239 (258)
T d1v5wa_         171 LQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR-----------GELRIAKIYDSPEM  239 (258)
T ss_dssp             HHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEESS-----------TTEEEEEEEECTTC
T ss_pred             HHHHHHhcCCEEEEeeeEeecccccccccCCceeecccceehheeEEEEEEEEcC-----------CCEEEEEEEeCCCC
Confidence            9999999999999999998876643   234456889999999999999998642           23468899999976


Q ss_pred             CCCceEEEEEEeCCCccc
Q 013567          339 RPYKQAEFEIIFGEGVSK  356 (440)
Q Consensus       339 ~p~~~~~~~i~~~~Gi~~  356 (440)
                      | ...+.|.|. ++||..
T Consensus       240 ~-~~~~~F~It-~~GI~~  255 (258)
T d1v5wa_         240 P-ENEATFAIT-AGGIGD  255 (258)
T ss_dssp             C-SSCEEEEEE-TTEEEE
T ss_pred             C-CcEEEEEEc-CCCccc
Confidence            5 456889998 888853

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.9e-25  Score=205.91  Aligned_cols=218  Identities=24%  Similarity=0.377  Sum_probs=157.1

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChhhh----hh
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPSYS----KA  190 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~~a----~~  190 (440)
                      .+.+||||++.||.+|+||||+|++++|+|+||+||||||++++.+++.      .+..++|++.+......+.    ..
T Consensus        12 ~~~~i~TGi~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   91 (251)
T d1szpa2          12 ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQR   91 (251)
T ss_dssp             SSCEECCSCHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHH
T ss_pred             CCCeecCCCHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999988764      3678999999998877543    34


Q ss_pred             hccccc----ceeecCCC---CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHH
Q 013567          191 LGVDVE----NLIVCQPD---NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS  263 (440)
Q Consensus       191 lGv~~~----~l~i~~~~---~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~  263 (440)
                      ++++..    ++.+.+..   ............+....+.++++|++..+.. .....   ........+.+...++.|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~l~  167 (251)
T d1szpa2          92 FGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSG---RGELSARQMHLAKFMRALQ  167 (251)
T ss_dssp             TCCCHHHHGGGEEEEECCSTTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGS-CC--------CTHHHHHHHHHHHHHHH
T ss_pred             cCCchhhhhcceEEEeccchhHHHHHHHHHHHHhhccccceeeehhhhhhhh-hhhcc---ccchhhHHHHHHHHHHHHH
Confidence            555543    44444443   3444444555556667888999999988763 22211   1112234455677888889


Q ss_pred             HHHHhcCCEEEEEeccccccccc---cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567          264 GNASKAGCTLIFLNQIRYKIGVY---YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP  340 (440)
Q Consensus       264 ~lak~~~~tVI~inhl~~~ig~~---~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p  340 (440)
                      .++...++++++++|.+...+..   ......+.||.+|.|+++.|+.+++.+           |.++.++|.|||..|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~l~~~~-----------~~~r~l~i~K~r~~~~  236 (251)
T d1szpa2         168 RLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGK-----------GCQRLCKVVDSPCLPE  236 (251)
T ss_dssp             HHHHHHCCCEEEEEECC----------------CHHHHHHHHCSEEEEEEECS-----------TTEEEEECCSCSSSCC
T ss_pred             hhhhhcceEEEEEEEEEeccCccccccCcceeccCccchhhheeEEEEEEecC-----------CcEEEEEEEECCCCCC
Confidence            99999999999999998876532   234556789999999999999998742           3457899999998877


Q ss_pred             CceEEEEEEeCCCcc
Q 013567          341 YKQAEFEIIFGEGVS  355 (440)
Q Consensus       341 ~~~~~~~i~~~~Gi~  355 (440)
                      . .+.|+|. ++||.
T Consensus       237 ~-~~~f~It-~~Gi~  249 (251)
T d1szpa2         237 A-ECVFAIY-EDGVG  249 (251)
T ss_dssp             C-CCCEEEE-TTEEE
T ss_pred             e-eEEEEEc-CCCcc
Confidence            5 4689997 88984

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.92  E-value=2.3e-24  Score=202.06  Aligned_cols=207  Identities=21%  Similarity=0.184  Sum_probs=159.7

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc-
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN-  197 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~-  197 (440)
                      +..++|||++.||++|+||||+|.+++|+|+||+|||+||++++.++++.+..++|++.|++....  .+..+|++.++ 
T Consensus         4 ~~~ri~TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~   83 (242)
T d1tf7a2           4 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEM   83 (242)
T ss_dssp             CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHH
T ss_pred             CCCccCCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHH
Confidence            345799999999999999999999999999999999999999999999999999999999887664  45566766532 


Q ss_pred             -----eeecC----CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 013567          198 -----LIVCQ----PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK  268 (440)
Q Consensus       198 -----l~i~~----~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~  268 (440)
                           +.+.+    .....+.+..+...+...++++++|||+..+.....             ...+...+..|..++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~-------------~~~~~~~~~~l~~~~~~  150 (242)
T d1tf7a2          84 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVS-------------NNAFRQFVIGVTGYAKQ  150 (242)
T ss_dssp             HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC-------------HHHHHHHHHHHHHHHHH
T ss_pred             hhcCceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecchhhhcCCC-------------HHHHHHHHHHHHHHHHH
Confidence                 22222    234567777777778888999999999998864110             12245677888889999


Q ss_pred             cCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC-ceEEEE
Q 013567          269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY-KQAEFE  347 (440)
Q Consensus       269 ~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~-~~~~~~  347 (440)
                      .++++++++|.....      .....++..+.++++..+.+++...     +.+   ..+.++|.|+|..+.. ....|+
T Consensus       151 ~~~~~i~~~~~~~~~------~~~~~~~~~~~~~ad~vi~l~~~~~-----~~~---~~R~i~v~K~R~~~~~~~~~~f~  216 (242)
T d1tf7a2         151 EEITGLFTNTSDQFM------GAHSITDSHISTITDTIILLQYVEI-----RGE---MSRAINVFKMRGSWHDKAIREFM  216 (242)
T ss_dssp             TTCEEEEEEECSSSS------CCCSSCSSCCTTTCSEEEEEEEEEE-----TTE---EEEEEEEEEESSSCCCCBCEEEE
T ss_pred             cCCeEEEEEeeEeec------cccccCCcceeeecceEEEEEEeec-----CCc---eEEEEEEEecCCCCCCCeEEEEE
Confidence            999999999986432      2234567788999999998876421     111   2467899999987754 457899


Q ss_pred             EEeCCCcc
Q 013567          348 IIFGEGVS  355 (440)
Q Consensus       348 i~~~~Gi~  355 (440)
                      |. ++|+.
T Consensus       217 I~-~~Gi~  223 (242)
T d1tf7a2         217 IS-DKGPD  223 (242)
T ss_dssp             EC-SSCEE
T ss_pred             Ee-CCcEE
Confidence            87 78984

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.91  E-value=1.2e-23  Score=195.55  Aligned_cols=218  Identities=23%  Similarity=0.377  Sum_probs=160.6

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----------------CCcEEEEcCCCCCC
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----------------GGNAMLVDAEHAFD  184 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----------------~~~vv~id~E~~~~  184 (440)
                      .+.+||||++.||.+|+||+|+|++++|+|+||+|||+||++++++++..                +..++||++|....
T Consensus        12 ~~~~i~TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~   91 (258)
T d2i1qa2          12 TVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR   91 (258)
T ss_dssp             TCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC
T ss_pred             CCceecCCCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcC
Confidence            45689999999999999999999999999999999999999999998753                33688999998877


Q ss_pred             hhh----hhhhccc----ccceeecCCCCHHHHHHH----HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHH
Q 013567          185 PSY----SKALGVD----VENLIVCQPDNGEMALEI----ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQA  252 (440)
Q Consensus       185 ~~~----a~~lGv~----~~~l~i~~~~~~ee~l~~----i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~a  252 (440)
                      ...    +..++..    ..++.+..+....+....    ...+.....+.++++|++..+.. ....   .......+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~i~~~~~-~~~~---~~~~~~~~~  167 (258)
T d2i1qa2          92 PERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR-NEYT---GRGKLAERQ  167 (258)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH-HHCC---CTTSHHHHH
T ss_pred             HHHHHHHHhhcchhhhhhhhcceeeccCchhhHHHHHHHHHHHHHHhcccceeeeeEEEEeec-hhcc---ccccchhhH
Confidence            653    2233333    235556666665554433    33334455678899999887763 2222   122333455


Q ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEE
Q 013567          253 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRV  332 (440)
Q Consensus       253 r~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v  332 (440)
                      ..+.+.++.++.++...++++++++|.+...+.....+..+.||..|.+.++.++.+++.+           +..+.++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-----------~~~r~l~v  236 (258)
T d2i1qa2         168 QKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGK-----------GDKRVAKL  236 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEECS-----------TTEEEEEE
T ss_pred             HHHHHHHHHHHHhhhhcceEEEeecceEeccccccCCcccccCcchhhhhceEEEEEEEcC-----------CCEEEEEE
Confidence            5677888889999999999999999998877766666777889999999999999998742           23578999


Q ss_pred             eeccCCCCCceEEEEEEeCCCcc
Q 013567          333 QKSKVSRPYKQAEFEIIFGEGVS  355 (440)
Q Consensus       333 ~Knr~~~p~~~~~~~i~~~~Gi~  355 (440)
                      .|+|..|+ ..+.|+|. ++||.
T Consensus       237 ~K~R~~~~-~~~~f~I~-~~Gi~  257 (258)
T d2i1qa2         237 YDSPHLPD-AEAIFRIT-EKGIQ  257 (258)
T ss_dssp             EECSSSCC-EEEEEEEE-TTEEE
T ss_pred             EECCCCCC-ceEEEEEC-CCCcc
Confidence            99998766 46789997 88873

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.90  E-value=4e-23  Score=191.09  Aligned_cols=208  Identities=16%  Similarity=0.212  Sum_probs=147.2

Q ss_pred             CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChh--hhhhhccccc
Q 013567          120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPS--YSKALGVDVE  196 (440)
Q Consensus       120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~--~a~~lGv~~~  196 (440)
                      ..+.+||||+++||.+|+||||+|++++|+|+||+|||+||++++.+.+. .+..++|++.|++....  ++...+++.+
T Consensus         3 ~~~~~i~TGi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~   82 (242)
T d1tf7a1           3 QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA   82 (242)
T ss_dssp             SSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred             CCCCcccCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChH
Confidence            46789999999999999999999999999999999999999999887654 45689999999876553  3334443331


Q ss_pred             c------ee------------ecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567          197 N------LI------------VCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA  258 (440)
Q Consensus       197 ~------l~------------i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~  258 (440)
                      .      ..            .........+++.+...++..++++++||++..+....  ..          ...+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~--~~----------~~~~~~~  150 (242)
T d1tf7a1          83 KLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY--DA----------SSVVRRE  150 (242)
T ss_dssp             HHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT--CC----------HHHHHHH
T ss_pred             HHHHhcchhhhhhccchhhhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhc--cC----------hhHHHHH
Confidence            1      11            11112234556667777777889999999999887411  10          1223456


Q ss_pred             HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567          259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS  338 (440)
Q Consensus       259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~  338 (440)
                      +..+...+++.++++++++|.....+.       ..+...+.+.++..+.++...     .++.   .++.++|.|+|..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~i~~~~~~~-----~~~~---~~r~l~v~K~R~~  215 (242)
T d1tf7a1         151 LFRLVARLKQIGATTVMTTERIEEYGP-------IARYGVEEFVSDNVVILRNVL-----EGER---RRRTLEILKLRGT  215 (242)
T ss_dssp             HHHHHHHHHHHTCEEEEEEECSSSSSC-------SSTTSCHHHHCSEEEEEEEEC-----STTC---CEEEEEEEEETTS
T ss_pred             HHHHHHHHHhcCCceEEeecccccccc-------cccCcceeeeccEEEEEEEee-----eCCe---eEEEEEEEEcCCC
Confidence            777888889999999999998765432       223344556677777776532     1222   3468999999976


Q ss_pred             CC-CceEEEEEEeCCCcc
Q 013567          339 RP-YKQAEFEIIFGEGVS  355 (440)
Q Consensus       339 ~p-~~~~~~~i~~~~Gi~  355 (440)
                      |. .....|+|. +.||.
T Consensus       216 ~~~~~~~~f~I~-~~Gi~  232 (242)
T d1tf7a1         216 SHMKGEYPFTIT-DHGIN  232 (242)
T ss_dssp             CCCCSEEEEEEE-TTEEE
T ss_pred             CCCCeEEEEEEe-CCcEE
Confidence            63 356779997 77885

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.1e-23  Score=185.00  Aligned_cols=218  Identities=24%  Similarity=0.325  Sum_probs=137.0

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CcEEEEcCCCCCChhhhhhhcccc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG------GNAMLVDAEHAFDPSYSKALGVDV  195 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~------~~vv~id~E~~~~~~~a~~lGv~~  195 (440)
                      +.+||||++.||.+|+|||++|++++|+||||+|||+||++++.+++..+      ....+++.................
T Consensus         2 ~~ri~TG~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (242)
T d1n0wa_           2 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY   81 (242)
T ss_dssp             CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred             CCEEcCCCHHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHHHHHHhhc
Confidence            57899999999999999999999999999999999999999999987542      346666666555544322221111


Q ss_pred             --------cceeecCCCCHH---HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567          196 --------ENLIVCQPDNGE---MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG  264 (440)
Q Consensus       196 --------~~l~i~~~~~~e---e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~  264 (440)
                              .++.........   +...............++.+|++..+.......    ..............++.|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~  157 (242)
T d1n0wa_          82 GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG----RGELSARQMHLARFLRMLLR  157 (242)
T ss_dssp             TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhchhhhhhhhhhhhhhhhhhhheeecccceeeeehhhhhc----ccchhhhHHHHHHHHHHHHH
Confidence                    123333333332   233333334445567788889887776322221    11223344556778888999


Q ss_pred             HHHhcCCEEEEEecccccccc---ccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567          265 NASKAGCTLIFLNQIRYKIGV---YYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY  341 (440)
Q Consensus       265 lak~~~~tVI~inhl~~~ig~---~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~  341 (440)
                      +++..++++++++|.....+.   .......+.+|..|.++++.++.+++.+           +..+.++|.|+|..|+ 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~l~~~~-----------~~~r~~~i~K~r~~~~-  225 (242)
T d1n0wa_         158 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR-----------GETRICKIYDSPCLPE-  225 (242)
T ss_dssp             HHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS-----------TTEEEEEECCBTTBSC-
T ss_pred             hhhhcceeEEEEEEEeccccccceeecccccccchhhHHHhCcEEEEEEEcC-----------CcEEEEEEEeCCCCCC-
Confidence            999999999999999876542   2233345678999999999999998732           2346889999998765 


Q ss_pred             ceEEEEEEeCCCccc
Q 013567          342 KQAEFEIIFGEGVSK  356 (440)
Q Consensus       342 ~~~~~~i~~~~Gi~~  356 (440)
                      ..+.|+|. ++||..
T Consensus       226 ~~~~f~I~-~~Gi~~  239 (242)
T d1n0wa_         226 AEAMFAIN-ADGVGD  239 (242)
T ss_dssp             EEEEEEEE-TTEEEC
T ss_pred             eEEEEEEc-CCceEc
Confidence            57889997 889854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=99.87  E-value=2.2e-21  Score=185.64  Aligned_cols=214  Identities=16%  Similarity=0.195  Sum_probs=143.2

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhhh----hcccc
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSKA----LGVDV  195 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~~----lGv~~  195 (440)
                      ...+|+||++.||.++ ||+.+|+++.|+|+||+|||+|+++++.+++ ..+.+++|++.|++..+...+.    .++..
T Consensus        14 ~~~~i~TG~~~lD~~~-~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~~~~~~~   92 (277)
T d1cr2a_          14 SVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL   92 (277)
T ss_dssp             CSCBCCCSCTTHHHHH-CSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG
T ss_pred             CccccCCCchhHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhHHhHHHHHhhcCCc
Confidence            4568999999999999 8999999999999999999999999999865 5788999999998876542111    12211


Q ss_pred             --------------------------cceeec---CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhh
Q 013567          196 --------------------------ENLIVC---QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQ  246 (440)
Q Consensus       196 --------------------------~~l~i~---~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~  246 (440)
                                                ..+.+.   ...+.+++...+.......++++||||+++.+.+.....      
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~------  166 (277)
T d1cr2a_          93 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGES------  166 (277)
T ss_dssp             GGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC--------------
T ss_pred             hhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEccccccccccccc------
Confidence                                      122222   234677888888888888899999999998876421110      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccc---cCC---ceeecccceeeeeceEEEEEeecccccccCC
Q 013567          247 QIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY---YGN---PEVTSGGIALKFFASVRLEIRSTGKIKSVKG  320 (440)
Q Consensus       247 q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~---~~~---~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g  320 (440)
                         .....+..++..|+.+|++++|+||+++|.++.....   .+.   .....|+..+.+.++..+.+.|...     .
T Consensus       167 ---~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~~~-----~  238 (277)
T d1cr2a_         167 ---DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ-----G  238 (277)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC--------
T ss_pred             ---chhHHHHHHHHHHHHHhhhccccceeecccccccccccccccccchhhhcccccchhhhCcEEEEEEecCc-----c
Confidence               1123467788899999999999999999998643221   111   1345788999999999999987431     1


Q ss_pred             CcccceEEEEEEeeccCCCCCceEEEEEEeCC
Q 013567          321 DEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGE  352 (440)
Q Consensus       321 ~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~  352 (440)
                      ++  -+.+.+.|.|||...+- .....+.|+.
T Consensus       239 ~~--~~~~~l~v~KnR~~G~~-G~~~~l~~d~  267 (277)
T d1cr2a_         239 DM--PNLVLVRILKCRFTGDT-GIAGYMEYNK  267 (277)
T ss_dssp             -----CEEEEEEEEETTTCCC-EEEEEEEECT
T ss_pred             CC--CCeEEEEEEccCCCCCC-CCEEEEEEeC
Confidence            11  24578999999964332 2234455553

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.2e-18  Score=160.73  Aligned_cols=218  Identities=20%  Similarity=0.277  Sum_probs=138.7

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCcEEEEcCCCCCChh--hhhhh
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK----------LGGNAMLVDAEHAFDPS--YSKAL  191 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~----------~~~~vv~id~E~~~~~~--~a~~l  191 (440)
                      .+..+.|.||.++ +|+.+|+++.|+|++|+|||||+++++..++.          .+.+++|++.|+.....  +...+
T Consensus        11 ~~~~~~p~~d~li-~G~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~   89 (274)
T d1nlfa_          11 AFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL   89 (274)
T ss_dssp             HHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHH
T ss_pred             HhcCCCCCHHHHh-CCccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHHH
Confidence            5677889999999 66667999999999999999999999988763          34589999999876543  22222


Q ss_pred             cccc---------cceeecCC------CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHH
Q 013567          192 GVDV---------ENLIVCQP------DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS  256 (440)
Q Consensus       192 Gv~~---------~~l~i~~~------~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~  256 (440)
                      +...         .++.+...      ....+.+..+...  ..++++||||++..+.+..+ .          ....+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvviD~l~~~~~~~~-~----------~~~~~~  156 (274)
T d1nlfa_          90 GAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRA--AEGRRLMVLDTLRRFHIEEE-N----------ASGPMA  156 (274)
T ss_dssp             HTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHH--HTTCSEEEEECGGGGCCSCT-T----------CHHHHH
T ss_pred             hhccChhhhhcccccceeccccCccchhHHHHHHHHHHHh--ccCccEEecCchhhhccccc-c----------chhhHH
Confidence            2211         12222211      1112222222222  24789999999998875211 1          122356


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccc--cCCceeecccceeeeeceEEEEEeeccccc--c-cCCCcccceEEEEE
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVY--YGNPEVTSGGIALKFFASVRLEIRSTGKIK--S-VKGDEDVGVRVRVR  331 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~--~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik--~-~~g~~~~G~~~~v~  331 (440)
                      ++++.|..++++++|+||+++|.++.-...  ........|+.+|...++.++.+.+...-+  + ...++..+..+++.
T Consensus       157 ~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
T d1nlfa_         157 QVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFG  236 (274)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEEEE
T ss_pred             HHHHHHHHHhhcCCCceehhhhccccccccCCcccccccccHHHHHhhccEEEEEEecchhhhhhccCcccccCcEEEEE
Confidence            778889999999999999999987632211  111224568999999999999999853211  0 12334456778999


Q ss_pred             EeeccCCCCCceEEEEEEeCCCccc
Q 013567          332 VQKSKVSRPYKQAEFEIIFGEGVSK  356 (440)
Q Consensus       332 v~Knr~~~p~~~~~~~i~~~~Gi~~  356 (440)
                      +.||+..||+....|+.. +.|+..
T Consensus       237 v~K~~~~~~~~~~~~~~~-~~g~~~  260 (274)
T d1nlfa_         237 VSKANYGAPFADRWFRRH-DGGVLK  260 (274)
T ss_dssp             EEECSSSSCCCCEEEEEC-GGGCEE
T ss_pred             EEeeCCCCCCceEEEEEe-CCcCCc
Confidence            999999999887777765 446543

>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Anti-LPS factor/recA domain
superfamily: RecA protein, C-terminal domain
family: RecA protein, C-terminal domain
domain: RecA protein, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=7.8e-17  Score=117.76  Aligned_cols=59  Identities=37%  Similarity=0.727  Sum_probs=56.6

Q ss_pred             ccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHHHHHh
Q 013567          355 SKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM  413 (440)
Q Consensus       355 ~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~~~~~  413 (440)
                      +++++|+|+|+++|+|.|+|+||+|+++++|||+++++.||++||+++++|+++||+++
T Consensus         1 ~~~GellDlav~~~ii~KsGsWysy~~eklGQGre~~~~~L~enpel~~eie~~ire~l   59 (60)
T d1u94a2           1 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL   59 (60)
T ss_dssp             CHHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHcCccccccceEEeCCccccchHHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999999999999999999999999986

>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Anti-LPS factor/recA domain
superfamily: RecA protein, C-terminal domain
family: RecA protein, C-terminal domain
domain: RecA protein, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=8.1e-17  Score=117.67  Aligned_cols=59  Identities=31%  Similarity=0.684  Sum_probs=56.6

Q ss_pred             ccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHHHHHh
Q 013567          355 SKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM  413 (440)
Q Consensus       355 ~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~~~~~  413 (440)
                      ++.++|+|+|+++++|.|+|+||+|+++++|||+++++.||++||+++++|+.+||+++
T Consensus         1 Sr~gellDla~~~~ii~KsGaWysy~~ekiGQGre~a~~~L~enpel~~eie~~ir~~l   59 (60)
T d1mo6a2           1 SREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKL   59 (60)
T ss_dssp             CHHHHHHHHHHTTTSSEESSSEEECSSSEEEESHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHcChhhccCceeEECCchHHhHHHHHHHHHHHCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999999999999999999999999999999986

>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Anti-LPS factor/recA domain
superfamily: RecA protein, C-terminal domain
family: RecA protein, C-terminal domain
domain: RecA protein, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.63  E-value=1e-16  Score=116.55  Aligned_cols=58  Identities=36%  Similarity=0.763  Sum_probs=55.8

Q ss_pred             chhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHHHHHhc
Q 013567          357 LGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS  414 (440)
Q Consensus       357 ~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~~~~~~  414 (440)
                      +++|+|+|+++++|.|+|+||+|+++++|||+++++.||++||+++++|+++||++++
T Consensus         2 ~gellDlav~~~ii~KsGaWysy~~e~iGQGre~a~~~L~enpel~~eie~~i~~~lk   59 (59)
T d1xp8a2           2 LSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRVMAAIR   59 (59)
T ss_dssp             HHHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHcCceecccceEEECCEehhhhHHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999999999999999999999999874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.1e-15  Score=142.71  Aligned_cols=154  Identities=16%  Similarity=0.269  Sum_probs=92.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHH------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALE------  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~------  211 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.++++++...+.. ..+.+|+.+++..+++..++.+.+.      
T Consensus        22 ~i~~Gei~~liGpsGsGKSTL-l~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~  100 (232)
T d2awna2          22 DIHEGEFVVFVGPSGCGKSTL-LRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  100 (232)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-----------------
T ss_pred             EEcCCCEEEEECCCCChHHHH-HHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHc
Confidence            478999999999999999999 99999999999999999998765432 4567999998876665555544332      


Q ss_pred             ---------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          212 ---------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       212 ---------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                               .+.+++.     .+-+.......| .+++|  |++|+...||++                     .+++..
T Consensus       101 ~~~~~~~~~~v~~~l~-----~~~l~~~~~~~~-~~LSG--GqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~  172 (232)
T d2awna2         101 GAKKEVINQRVNQVAE-----VLQLAHLLDRKP-KALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE  172 (232)
T ss_dssp             ----CHHHHHHHHHHH-----HC------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-----hCCChhhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence                     2333322     333344444443 56666  888888888877                     345566


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      |+.+.++.|+|||+++|..+.+..+++.......|+.+..
T Consensus       173 l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~  212 (232)
T d2awna2         173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV  212 (232)
T ss_dssp             HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            7777788999999999998876655554445555554433

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=9.7e-15  Score=136.69  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=107.5

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHH-------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMAL-------  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l-------  210 (440)
                      -+++|++++|.|||||||||| ++++.++.+++.|.++|++.+.... ...+.+|+.+++..+++..++.+.+       
T Consensus        28 ~v~~Ge~~~liGpsGaGKSTL-l~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~  106 (239)
T d1v43a3          28 TIKDGEFLVLLGPSGCGKTTT-LRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK  106 (239)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHc
Confidence            478999999999999999999 9999999999999999999875442 3456799999887776666665543       


Q ss_pred             --------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567          211 --------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK  261 (440)
Q Consensus       211 --------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~  261 (440)
                              +.+.++++.-+     ++....-.| .++++  |++|+...||++                     .+++..
T Consensus       107 ~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~-~~LSG--Gq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~l  178 (239)
T d1v43a3         107 KFPKDEIDKRVRWAAELLQ-----IEELLNRYP-AQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE  178 (239)
T ss_dssp             CCCHHHHHHHHHHHHHHTT-----CGGGTTSCT-TTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcC-----ChhhhcCCh-hhCCH--HHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHH
Confidence                    33334433222     344444443 66776  888888888887                     345555


Q ss_pred             HHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      |..+.++.|+|||+++|..+.+..+++.......|+.+..
T Consensus       179 l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~  218 (239)
T d1v43a3         179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI  218 (239)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            6666788899999999999877655555555555555433

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=9.7e-15  Score=136.08  Aligned_cols=141  Identities=18%  Similarity=0.274  Sum_probs=101.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.||+||||||| +++++++.++..|.++|++.+.....       +.+.+|+.+++..+++..++.+.+.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTL-l~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~  105 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTM-LNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE  105 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCcchh-hHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHh
Confidence            578999999999999999999 99999999999999999998754321       2356999999887777767655443


Q ss_pred             HHHHHHhcC-------------CcceEEE-ecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          212 IADRMCRSG-------------AIDLICV-DSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       212 ~i~~l~~~~-------------~~~lvVI-Dsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                      ....+....             -.+++-+ |.+...+| .+++|  |++|+...||++                     .
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-~~LSG--GqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~  182 (230)
T d1l2ta_         106 LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-NQLSG--GQQQRVAIARALANNPPIILADQPTGALDSKTGE  182 (230)
T ss_dssp             HHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-hhCCH--HHHHHHHHHhhhhcCCCEEEecCCccccCHHHHH
Confidence            221110000             0111112 33333343 66777  899999999998                     4


Q ss_pred             HHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      .++..|+.+.++.|+|||+++|..+..
T Consensus       183 ~i~~~l~~l~~~~g~tii~vTHd~~~a  209 (230)
T d1l2ta_         183 KIMQLLKKLNEEDGKTVVVVTHDINVA  209 (230)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHhhCCEEEEECCCHHHH
Confidence            566777777788999999999997643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.53  E-value=4.7e-15  Score=137.99  Aligned_cols=159  Identities=20%  Similarity=0.215  Sum_probs=111.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      -+++|++++|.|||||||||| +++++++..++.|.++|++++..+.. ..+.+|+.+++..+++..++.+.+.....+.
T Consensus        22 ~i~~Ge~~~liGpsGaGKSTl-l~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~  100 (229)
T d3d31a2          22 KVESGEYFVILGPTGAGKTLF-LELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (229)
T ss_dssp             EECTTCEEEEECCCTHHHHHH-HHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             EECCCCEEEEECCCCCcHHHH-HHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhc
Confidence            478999999999999999999 99999999999999999998765432 4567999999988887778877655432221


Q ss_pred             hcCC-------cceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhc
Q 013567          218 RSGA-------IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKA  269 (440)
Q Consensus       218 ~~~~-------~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~  269 (440)
                      ....       ...+-+..+..-. ..++++  |++|+...||++                     .++...|..+.++.
T Consensus       101 ~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSG--G~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~  177 (229)
T d3d31a2         101 KIKDPKRVLDTARDLKIEHLLDRN-PLTLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN  177 (229)
T ss_dssp             CCCCHHHHHHHHHHTTCTTTTTSC-GGGSCH--HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHhcchhhHhCC-hhhCCH--HHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            1000       0111123333333 356666  888888888887                     34445555666788


Q ss_pred             CCEEEEEeccccccccccCCceeecccceeee
Q 013567          270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      |+|||+++|..+.+..+++.......|+.+..
T Consensus       178 g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~  209 (229)
T d3d31a2         178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQV  209 (229)
T ss_dssp             TCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred             CcEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999998876655554444555555433

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.53  E-value=3.5e-15  Score=139.87  Aligned_cols=154  Identities=16%  Similarity=0.250  Sum_probs=112.0

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALE  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~  211 (440)
                      -+++|++++|.||+||||||| +++++++.+++.|.+++++......       .+.+.+|+.+++..+++..++.+.+.
T Consensus        25 ~i~~Ge~~~liG~sGaGKSTl-l~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~  103 (240)
T d1g2912          25 EVKDGEFMILLGPSGCGKTTT-LRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCChHHHH-HHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhh
Confidence            378999999999999999999 9999999999999999998764332       13467999999887777767765543


Q ss_pred             H---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          212 I---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       212 ~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                      .               +.+++.     .+-+.....-.| .+++|  |++|+...||++                     
T Consensus       104 ~~~~~~~~~~~e~~~~v~~~l~-----~~~l~~~~~~~p-~~LSG--GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~  175 (240)
T d1g2912         104 FPLKLRKVPRQEIDQRVREVAE-----LLGLTELLNRKP-RELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR  175 (240)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHH-----HHTCGGGTTCCG-GGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred             hhHHHcCCCHHHHHHHHHHHHH-----HcCChhHhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHH
Confidence            3               222222     233344444443 67777  899999999987                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      ..++..|.++.++.|+|||+++|..+.+..+++.......|+.+..
T Consensus       176 ~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~  221 (240)
T d1g2912         176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV  221 (240)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            3455556677788899999999998876655555555555555444

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=3.8e-15  Score=139.65  Aligned_cols=152  Identities=16%  Similarity=0.258  Sum_probs=110.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---hhhhhcccccceeecCCCCHHHHHH-
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---YSKALGVDVENLIVCQPDNGEMALE-  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~a~~lGv~~~~l~i~~~~~~ee~l~-  211 (440)
                      -+++|++++|.||+||||||| ++++.++.++..|.+++++++....   .   +.+.+|+.+++..++++.++.+.+. 
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTL-l~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~  105 (240)
T d3dhwc1          27 HVPAGQIYGVIGASGAGKSTL-IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL  105 (240)
T ss_dssp             EECSSCEEEEEESTTSSHHHH-HHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHH
Confidence            478999999999999999999 9999999999999999999875432   1   3367999999887777766655433 


Q ss_pred             --------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          212 --------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       212 --------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                                    .+.++++     .+-++......| .+++|  |++|+...||++                     .
T Consensus       106 ~l~~~~~~~~~~~~~v~~~L~-----~vgL~~~~~~~~-~~LSG--G~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~  177 (240)
T d3dhwc1         106 PLELDNTPKDEVKRRVTELLS-----LVGLGDKHDSYP-SNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTR  177 (240)
T ss_dssp             HHHTTTCCTTHHHHHHHHHHH-----HHSTTTTTSSCB-SCCCH--HHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHH-----HcCCchhhhCCh-hhCCH--HHHHHHHHhhhhccCCCeEEeccccccCCHHHhh
Confidence                          2223322     222334444443 66776  889999999987                     4


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL  299 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l  299 (440)
                      +++..|..+.++.|+|||+++|..+.+..+++.......|+.+
T Consensus       178 ~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv  220 (240)
T d3dhwc1         178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI  220 (240)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence            5666667777888999999999988766555544445555543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.52  E-value=8.4e-15  Score=137.29  Aligned_cols=155  Identities=18%  Similarity=0.225  Sum_probs=112.5

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHH-
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMAL-  210 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l-  210 (440)
                      =-+++|++++|.||+||||||| ++++.++.+++.|.+++++......      .+.+++|+.+++..+++..++.+.+ 
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTl-l~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~  104 (242)
T d1oxxk2          26 INIENGERFGILGPSGAGKTTF-MRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIA  104 (242)
T ss_dssp             EEECTTCEEEEECSCHHHHHHH-HHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHH
T ss_pred             EEECCCCEEEEECCCCCcHHHH-HHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhh
Confidence            3588999999999999999999 9999999999999999998864321      2356799999887766665655433 


Q ss_pred             --------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          211 --------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       211 --------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                                    +.+.++++     .+-++......| .+++|  |++|+...||++                     
T Consensus       105 ~~l~~~~~~~~~~~~~v~~~l~-----~~gL~~~~~~~p-~~LSG--GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~  176 (242)
T d1oxxk2         105 FPLTNMKMSKEEIRKRVEEVAK-----ILDIHHVLNHFP-RELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMR  176 (242)
T ss_dssp             GGGTTSSCCHHHHHHHHHHHHH-----HTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGH
T ss_pred             hhhHhhcCCHHHHHHHHHHHHh-----hcChHhhhhCCh-hhCCH--HHHhHHHHHhHHhhcccceeecCCccCCCHHHH
Confidence                          33444433     233456666654 77777  899999999988                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      .+++..|..+.++.|+|||+++|..+.+..+++.......|+.+..
T Consensus       177 ~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~  222 (242)
T d1oxxk2         177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV  222 (242)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            3455666677788999999999998876554554444445544433

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=4.8e-14  Score=131.82  Aligned_cols=149  Identities=13%  Similarity=0.175  Sum_probs=108.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHH-----------
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMAL-----------  210 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l-----------  210 (440)
                      +++++|.|||||||||| +++++++.++..|.+++++.+.... ...+.+|+.+++..+++..++.+.+           
T Consensus        24 ~e~~~liGpnGaGKSTl-l~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~  102 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVF-LELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE  102 (240)
T ss_dssp             SSEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHH
T ss_pred             CEEEEEECCCCChHHHH-HHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHH
Confidence            36999999999999999 9999999999999999999876443 2456799999887776666665543           


Q ss_pred             --HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHH
Q 013567          211 --EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNAS  267 (440)
Q Consensus       211 --~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak  267 (440)
                        +.+.++++.     +-++.+....| .+++|  |++|+...||++                     ..++..+..+.+
T Consensus       103 ~~~~v~~~l~~-----~gl~~~~~~~~-~~LSG--G~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~  174 (240)
T d2onka1         103 RDRRVREMAEK-----LGIAHLLDRKP-ARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR  174 (240)
T ss_dssp             HHHHHHHHHHT-----TTCTTTTTCCG-GGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-----cCcHhhhhCCh-hhCCH--HHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHH
Confidence              234444432     22345555553 67777  899999999988                     345555666778


Q ss_pred             hcCCEEEEEeccccccccccCCceeecccceee
Q 013567          268 KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK  300 (440)
Q Consensus       268 ~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~  300 (440)
                      +.++|||+++|..+.+..+++.......|+.+.
T Consensus       175 ~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~  207 (240)
T d2onka1         175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE  207 (240)
T ss_dssp             HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            889999999999887665555444444454433

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1.1e-13  Score=129.64  Aligned_cols=160  Identities=19%  Similarity=0.218  Sum_probs=105.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      -+++|++++|.|||||||||| ++++.++.++..|.+++++++....  ...+.+|+.++...+++..++.+.+.....+
T Consensus        24 ~v~~Gei~glvG~nGaGKSTL-l~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~  102 (238)
T d1vpla_          24 EIEEGEIFGLIGPNGAGKTTT-LRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF  102 (238)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHh
Confidence            478999999999999999999 9999999999999999999875543  2456788888876666665654443322211


Q ss_pred             HhcC----------CcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567          217 CRSG----------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA  266 (440)
Q Consensus       217 ~~~~----------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la  266 (440)
                      ....          -.+.+-++....-. ...+++  |++|+...++++                    ...+..+...+
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lSg--G~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~  179 (238)
T d1vpla_         103 YASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSK--GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA  179 (238)
T ss_dssp             HCCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCCHHHHhhh-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            1000          00111122222111 133443  666666666665                    33444555555


Q ss_pred             HhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      ++.|.|||+++|..+.+..+|++......|+.+...
T Consensus       180 ~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g  215 (238)
T d1vpla_         180 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG  215 (238)
T ss_dssp             HHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEE
T ss_pred             HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence            667999999999999887777766666667666544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.41  E-value=2.5e-13  Score=128.71  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=103.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----------------hhhhhhcccccceeecC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----------------SYSKALGVDVENLIVCQ  202 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----------------~~a~~lGv~~~~l~i~~  202 (440)
                      -+++|++++|+||+||||||| ++++.++.++..|.+++++++....                .+.+++|+.+++..+++
T Consensus        24 ~i~~GEi~~iiG~sGsGKSTL-l~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~  102 (258)
T d1b0ua_          24 QARAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  102 (258)
T ss_dssp             EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhcc
Confidence            478999999999999999999 9999999999999999999875311                24567899988877766


Q ss_pred             CCCHHHHHH----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567          203 PDNGEMALE----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------  255 (440)
Q Consensus       203 ~~~~ee~l~----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------  255 (440)
                      ..++.+.+.                .+.+++..-++    .+.....+| .+++|  |++|+...||++           
T Consensus       103 ~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~p-~~LSG--G~~QRv~iAraL~~~P~llilDE  175 (258)
T d1b0ua_         103 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI----DERAQGKYP-VHLSG--GQQQRVSIARALAMEPDVLLFDE  175 (258)
T ss_dssp             TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC----CHHHHTSCG-GGSCH--HHHHHHHHHHHHHTCCSEEEEES
T ss_pred             chhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCC----chhhhccCc-ccccH--HHHHHHHHHHHHhcCCCEEEecc
Confidence            666544322                22222221111    122223333 66776  888888888887           


Q ss_pred             ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                                .++++.|..+ ++.|+|||+++|..+.+..+++...+...|+.+..
T Consensus       176 PT~gLD~~~~~~i~~ll~~l-~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~  230 (258)
T d1b0ua_         176 PTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  230 (258)
T ss_dssp             TTTTSCHHHHHHHHHHHHHH-HHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             ccccCCHHHHHHHHHhhhhh-cccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence                      3444444444 55699999999998876555554444445554433

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.41  E-value=1.9e-13  Score=129.22  Aligned_cols=154  Identities=16%  Similarity=0.180  Sum_probs=99.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccccceeecCCCCHHHHHH---
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVENLIVCQPDNGEMALE---  211 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~~l~i~~~~~~ee~l~---  211 (440)
                      -+++|++++|.|||||||||| ++++.++.+++.|.+++++++.....    ....+++.+++..++...++.+.+.   
T Consensus        26 ~v~~Gei~~liG~nGaGKSTL-l~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~  104 (254)
T d1g6ha_          26 SVNKGDVTLIIGPNGSGKSTL-INVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE  104 (254)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             EECCCCEEEEECCCCCcHHHH-HHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehh
Confidence            578999999999999999999 99999999999999999998754332    2223666676655544444443332   


Q ss_pred             -------------------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567          212 -------------------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------  255 (440)
Q Consensus       212 -------------------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------  255 (440)
                                               .+..++.     .+-++...... ..++++  |++|+...+|++           
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~Qrv~iAraL~~~P~llilDE  176 (254)
T d1g6ha_         105 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILE-----FLKLSHLYDRK-AGELSG--GQMKLVEIGRALMTNPKMIVMDE  176 (254)
T ss_dssp             TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHH-----HTTCGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEES
T ss_pred             hhccccchhhhhhhcccccHHHHHHHHHHHHH-----hcCcchhccCc-hhhCCc--HHHHHHHHHHHHHhCcCchhhcC
Confidence                                     1111111     11122222222 244554  677777777766           


Q ss_pred             ---------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          256 ---------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       256 ---------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                               +..+..+...+++.|+|||+++|..+.+..+++.......|+.+..
T Consensus       177 Pt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~  231 (254)
T d1g6ha_         177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE  231 (254)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence                     2334444444466799999999999887766665555556655443

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.34  E-value=3.5e-13  Score=126.41  Aligned_cols=154  Identities=17%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhh--hcccccceeecCCCCHHHHHHH--
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKA--LGVDVENLIVCQPDNGEMALEI--  212 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~--lGv~~~~l~i~~~~~~ee~l~~--  212 (440)
                      -+++|++++|.|||||||||| ++++.++.+++.|.++|++++.....  ...+  +++.+++..+++..++.+.+..  
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl-~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~  106 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTT-LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred             EECCCCEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHH
Confidence            478999999999999999999 99999999999999999998765432  2233  4566666555555555443211  


Q ss_pred             ------------HHHHHhcCCcceE-EEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHH
Q 013567          213 ------------ADRMCRSGAIDLI-CVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL  259 (440)
Q Consensus       213 ------------i~~l~~~~~~~lv-VIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l  259 (440)
                                  ++....     .+ .++....-. ..++++  |++|+...+|++                    +..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~-~~~LSG--G~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i  178 (240)
T d1ji0a_         107 YNRKDKEGIKRDLEWIFS-----LFPRLKERLKQL-GGTLSG--GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV  178 (240)
T ss_dssp             TTCCCSSHHHHHHHHHHH-----HCHHHHTTTTSB-SSSSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHH-----HhhChHHHHhCc-hhhCCH--HHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHH
Confidence                        111100     00 011211111 134454  667777777765                    2333


Q ss_pred             HHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567          260 RKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF  301 (440)
Q Consensus       260 ~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~  301 (440)
                      ..+...+++.|+|||+++|..+.+..+++.......|+.+..
T Consensus       179 ~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~  220 (240)
T d1ji0a_         179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE  220 (240)
T ss_dssp             HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            333444455699999999998776555554444555554433

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.31  E-value=2.2e-12  Score=121.75  Aligned_cols=153  Identities=18%  Similarity=0.200  Sum_probs=93.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCC-----------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPD-----------  204 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~-----------  204 (440)
                      -|++|++++|+||+||||||| ++++.++.++..|.+++++.+....   .+.+.+++.+++..++...           
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~  115 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE  115 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHH-HHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS
T ss_pred             EEcCCCEEEEECCCCChHHHH-HHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcc
Confidence            589999999999999999999 9999999999999999999875443   2566788888776544322           


Q ss_pred             --CHHHHHHHHHHHHhcCCcc-eE-----EEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          205 --NGEMALEIADRMCRSGAID-LI-----CVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       205 --~~ee~l~~i~~l~~~~~~~-lv-----VIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                        +.+++.+.++    ..... .+     -+|....-. ...+++  |++|+...||++                     
T Consensus       116 ~~~~~~i~~a~~----~~~l~~~i~~l~~gl~t~~~~~-~~~LSG--GqkQRvaiARal~~~p~ililDEpts~LD~~~~  188 (253)
T d3b60a1         116 EYSREQIEEAAR----MAYAMDFINKMDNGLDTIIGEN-GVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTESE  188 (253)
T ss_dssp             CCCHHHHHHHHH----TTTCHHHHHHSTTGGGSBCCTT-SCSSCH--HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred             cCCHHHHHHHHH----HHhHHHHHHhccccchhhhcCC-CCCcCH--HHHHHHHHHHHHhcCCCEEEeccccccCCHHHH
Confidence              2222222111    11110 00     011111111 134444  778888888876                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      ..++..|..+.  .+.|||+|+|..+.+. .++...+...|+.+...
T Consensus       189 ~~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G  232 (253)
T d3b60a1         189 RAIQAALDELQ--KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERG  232 (253)
T ss_dssp             HHHHHHHHHHH--TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHhc--cCCEEEEEECCHHHHH-hCCEEEEEECCEEEEEC
Confidence            23344444432  3899999999887553 34444444455554443

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.5e-13  Score=124.89  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=98.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHH-----
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMAL-----  210 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l-----  210 (440)
                      -|++|++++|+||+||||||| ++++.++.++..|.++|++.+....   .+++.+++.+++..++.. ++.+.+     
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTL-l~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~  113 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTV-AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLT  113 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHCSCS
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCc-chhhhhhhhhc
Confidence            579999999999999999999 9999999999999999999865332   356778988887765532 332221     


Q ss_pred             ---------HHHHH-----HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567          211 ---------EIADR-----MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------  255 (440)
Q Consensus       211 ---------~~i~~-----l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------  255 (440)
                               .....     .+....-   .+|....-. ...+++  |++|+...||++                     
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~i~~l~~---g~~~~i~~~-~~~LSG--GqkQRvaiARal~~~p~ililDEpTs~LD~~~~  187 (251)
T d1jj7a_         114 QKPTMEEITAAAVKSGAHSFISGLPQ---GYDTEVDEA-GSQLSG--GQRQAVALARALIRKPCVLILDDATSALDANSQ  187 (251)
T ss_dssp             SCCCHHHHHHHHHHHTCHHHHHTSTT---GGGCBCCSS-CSSSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhccc---cchhhHhcc-CccCCh--hHceEEEEeeccccCCcEEEecCcCcccChhhH
Confidence                     11111     1110000   012111111 134555  888888888887                     


Q ss_pred             HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      ..++..|..+.++.+.|||+|+|..+.+. .++...+...|+.+...
T Consensus       188 ~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~G  233 (251)
T d1jj7a_         188 LQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGG  233 (251)
T ss_dssp             HHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEC
Confidence            23444555555677999999999876543 24444444555554443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.3e-11  Score=115.49  Aligned_cols=153  Identities=18%  Similarity=0.171  Sum_probs=93.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHH--------
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGE--------  207 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~e--------  207 (440)
                      -+++|++++|+||+||||||| ++++.++..+..|.++|++.+....   .+++.+++.+++..++.. ++.        
T Consensus        25 ~i~~Ge~vaIvG~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~  102 (241)
T d2pmka1          25 SIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANP  102 (241)
T ss_dssp             EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTS-BHHHHHCTTST
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCc-cccccccccCc
Confidence            478999999999999999999 9999999999999999998865433   266788998877655432 222        


Q ss_pred             -----HHHHHHHHH-----HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567          208 -----MALEIADRM-----CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S  256 (440)
Q Consensus       208 -----e~l~~i~~l-----~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~  256 (440)
                           ++...++..     +.....   -.|....-. ...+++  |++|+...||++                     .
T Consensus       103 ~~~~~~~~~~~~~~~~~~~i~~~~~---~~~t~i~~~-g~~LSG--Gq~QRvalARal~~~p~ililDEpts~LD~~~~~  176 (241)
T d2pmka1         103 GMSVEKVIYAAKLAGAHDFISELRE---GYNTIVGEQ-GAGLSG--GQRQRIAIARALVNNPKILIFDEATSALDYESEH  176 (241)
T ss_dssp             TCCHHHHHHHHHHHTCHHHHTTSTT---GGGSBCSTT-TTCCCH--HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred             cccHHHHHHHHHHHhhHHHHHhhhc---chhhhcCCC-CCccCH--HHHHHHhhhhhhhcccchhhhhCCccccCHHHHH
Confidence                 222221111     110000   011111111 133444  777777777776                     2


Q ss_pred             HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                      .++..|..+.  .+.|||+|+|..+.+. .++...+...|+.+...
T Consensus       177 ~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G  219 (241)
T d2pmka1         177 VIMRNMHKIC--KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQG  219 (241)
T ss_dssp             HHHHHHHHHH--TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHh--CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEEC
Confidence            3444444443  3889999999876553 34444444455554443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.19  E-value=6.2e-12  Score=117.85  Aligned_cols=62  Identities=13%  Similarity=0.292  Sum_probs=52.3

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|+||+||||||| ++++.++.++..|.+++++.+..+.   .+++.+|+.+++..++
T Consensus        24 ~i~~Ge~vaivG~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf   88 (242)
T d1mv5a_          24 EAQPNSIIAFAGPSGGGKSTI-FSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIM   88 (242)
T ss_dssp             EECTTEEEEEECCTTSSHHHH-HHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCC
T ss_pred             EEcCCCEEEEECCCCCCHHHH-HHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccC
Confidence            479999999999999999999 9999999999999999998764432   3567789888776544

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.14  E-value=1.7e-11  Score=115.56  Aligned_cols=62  Identities=24%  Similarity=0.410  Sum_probs=51.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC  201 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~  201 (440)
                      -+++|++++|+|++||||||| ++++.++..+..|.+++++.+..+.   .+++.+++.+++..++
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf  104 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF  104 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHH-HTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC
T ss_pred             EEcCCCEEEEECCCCCcHHHH-HHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCC
Confidence            589999999999999999999 9999999999999999998764322   3667788888765544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.8e-10  Score=106.94  Aligned_cols=146  Identities=17%  Similarity=0.135  Sum_probs=86.1

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCC-----------
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQP-----------  203 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~-----------  203 (440)
                      --+++|++++|.|||||||||| ++++.++. ++.|.++++++.....   .++...++..++......           
T Consensus        20 l~I~~Gei~~iiG~nGaGKSTL-l~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   97 (231)
T d1l7vc_          20 GEVRAGEILHLVGPNGAGKSTL-LARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ   97 (231)
T ss_dssp             EEEETTCEEECBCCTTSSHHHH-HHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHC
T ss_pred             EEEcCCCEEEEECCCCCcHHHH-HHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhcc
Confidence            4688999999999999999999 89999965 6789999998853221   122222222221110000           


Q ss_pred             ----------------------------CCH--HHHHHHHHHHHh-----cCCcceEEEecccccCCchhhcccchhhhH
Q 013567          204 ----------------------------DNG--EMALEIADRMCR-----SGAIDLICVDSVSALTPRAEIEGEIGMQQI  248 (440)
Q Consensus       204 ----------------------------~~~--ee~l~~i~~l~~-----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~  248 (440)
                                                  .+.  .+-+.+++.++.     ...++++++|..+.-...            
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~------------  165 (231)
T d1l7vc_          98 HDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV------------  165 (231)
T ss_dssp             SCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCH------------
T ss_pred             chhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCH------------
Confidence                                        111  112233333332     123467777766554420            


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567          249 GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF  302 (440)
Q Consensus       249 ~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~  302 (440)
                       ..    ...+..+.+.+++.|+|||+++|..+.+-.+++......+|+.+...
T Consensus       166 -~~----~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G  214 (231)
T d1l7vc_         166 -AQ----QSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG  214 (231)
T ss_dssp             -HH----HHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCS
T ss_pred             -HH----HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEC
Confidence             00    12233333444566999999999988776666666666677665543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.06  E-value=5.1e-11  Score=108.37  Aligned_cols=133  Identities=19%  Similarity=0.202  Sum_probs=87.3

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      =-+++|++++|.|||||||||| ++++.+..+|..|.+++++....  .+...+++.+++..+.+..++++.+.....+.
T Consensus        22 ~~i~~Gei~~l~G~NGsGKSTL-l~~i~gl~~p~~G~I~~~g~~i~--~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~   98 (200)
T d1sgwa_          22 MTIEKGNVVNFHGPNGIGKTTL-LKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY   98 (200)
T ss_dssp             EEEETTCCEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred             EEEcCCCEEEEECCCCChHHHH-HHHHhcccccCCCEEEECCEehh--HhcCcEEEEeecccCCCCcCHHHHHHHHHHhc
Confidence            3588999999999999999999 99999999999999999886532  23445666676666555556665554433221


Q ss_pred             hcC-----------CcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHH
Q 013567          218 RSG-----------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGN  265 (440)
Q Consensus       218 ~~~-----------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~l  265 (440)
                      ...           ..++  .| +..  ...++++  |++|+...++++                     ..+++.|..+
T Consensus        99 ~~~~~~~~~~~~l~~~~~--~~-~~~--~~~~LSg--G~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~  171 (200)
T d1sgwa_          99 GVKVNKNEIMDALESVEV--LD-LKK--KLGELSQ--GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI  171 (200)
T ss_dssp             TCCCCHHHHHHHHHHTTC--CC-TTS--BGGGSCH--HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHcCC--cc-ccc--ccCcCCC--cHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHH
Confidence            100           0000  01 111  1134443  777777777765                     3566778888


Q ss_pred             HHhcCCEEEEEeccc
Q 013567          266 ASKAGCTLIFLNQIR  280 (440)
Q Consensus       266 ak~~~~tVI~inhl~  280 (440)
                      +++.+++||..+|..
T Consensus       172 ~~~~~~~ii~~~~~l  186 (200)
T d1sgwa_         172 LKEKGIVIISSREEL  186 (200)
T ss_dssp             HHHHSEEEEEESSCC
T ss_pred             HhCCCEEEEEEechh
Confidence            888887777776653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=2e-09  Score=102.54  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=37.9

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      -+++|++++|+||+||||||| ++++.+...+..|.+.+++.
T Consensus        58 ~i~~Ge~vaivG~nGsGKSTL-l~~i~Gl~~p~~G~I~~~g~   98 (281)
T d1r0wa_          58 NIEKGEMLAITGSTGSGKTSL-LMLILGELEASEGIIKHSGR   98 (281)
T ss_dssp             EECTTCEEEEEESTTSSHHHH-HHHHHTSSCCSEEEEECCSC
T ss_pred             EEcCCCEEEEECCCCChHHHH-HHHHhCCCcCCCcEEEECCE
Confidence            489999999999999999999 99999999999898888874

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.32  E-value=1.2e-06  Score=75.73  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +.|+||||+||||| ++.+.+...+..+.+++...
T Consensus         3 i~I~G~~G~GKSTL-l~~i~~~l~~~~g~~~~~~~   36 (178)
T d1ye8a1           3 IIITGEPGVGKTTL-VKKIVERLGKRAIGFWTEEV   36 (178)
T ss_dssp             EEEECCTTSSHHHH-HHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEECCCCcHHHHH-HHHHHhcCCCCcceEEECCc
Confidence            78999999999999 88888888877777777643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.13  E-value=2.1e-05  Score=70.76  Aligned_cols=91  Identities=24%  Similarity=0.255  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEIADR  215 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~  215 (440)
                      .+.++.++||+|+||||.+.+++..+.+.+.++.+++..---    ++  .+++.+|+.+.  ..........+......
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~--~~~~~~d~~~~~~~~~~   82 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI--QGPEGTDPAALAYDAVQ   82 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEE--CCCTTCCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEE--eccCCccHHHHHHHHHH
Confidence            578999999999999999999999888888888888765311    11  25666766521  11223344444433322


Q ss_pred             HHhcCCcceEEEecccccC
Q 013567          216 MCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       216 l~~~~~~~lvVIDsl~~l~  234 (440)
                      ..+..+.++|+||......
T Consensus        83 ~~~~~~~d~ilIDTaGr~~  101 (207)
T d1okkd2          83 AMKARGYDLLFVDTAGRLH  101 (207)
T ss_dssp             HHHHHTCSEEEECCCCCCT
T ss_pred             HHHHCCCCEEEcCccccch
Confidence            2333467999999987654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.10  E-value=3e-05  Score=69.74  Aligned_cols=91  Identities=27%  Similarity=0.287  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALEIA  213 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~~i  213 (440)
                      ....++.++||+|+||||.+.+++..+.+.+.++.+++.. +...       .+++.+++...  .+.++.....+...+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~D-t~R~gA~eQL~~~a~~l~v~~~--~~~~~~~~~~~~~~~   84 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVL--EVMDGESPESIRRRV   84 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEE--ECCTTCCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc-cccchHHHHHHHHHHhcCCccc--cccccchhhHHHHHH
Confidence            4567899999999999999999999999888999988875 3322       15666666432  233455666665555


Q ss_pred             HHHHhcCCcceEEEecccccC
Q 013567          214 DRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       214 ~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      ..+.+....++|+||......
T Consensus        85 ~~~~~~~~~d~vlIDTaGr~~  105 (207)
T d1ls1a2          85 EEKARLEARDLILVDTAGRLQ  105 (207)
T ss_dssp             HHHHHHHTCCEEEEECCCCSS
T ss_pred             HHHHhhccCcceeecccccch
Confidence            544455678999999987654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=2.9e-05  Score=70.03  Aligned_cols=88  Identities=17%  Similarity=0.263  Sum_probs=61.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      .++.++||+|+||||.+.++++.+.+.+.++..++.. ++..       .+++.+|++.  .....+.....++......
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D-t~R~gA~eQL~~~a~~l~v~~--~~~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD-TFRAAAVEQLQVWGQRNNIPV--IAQHTGADSASVIFDAIQA   86 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCC-TTCHHHHHHHHHHHHHTTCCE--ECCSTTCCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc-cccccchhhhhhhhhhcCCcc--cccccCCCHHHHHHHHHHH
Confidence            4899999999999999999998888888888888774 3333       2566777653  1223344555555443333


Q ss_pred             HhcCCcceEEEecccccC
Q 013567          217 CRSGAIDLICVDSVSALT  234 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~  234 (440)
                      .+..+.++|+||......
T Consensus        87 a~~~~~d~ilIDTaGr~~  104 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRLQ  104 (211)
T ss_dssp             HHHTTCSEEEECCCCCGG
T ss_pred             HHHcCCCEEEeccCCCcc
Confidence            344678999999866543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.4e-05  Score=72.60  Aligned_cols=123  Identities=16%  Similarity=0.139  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      |++..+-+.++||||+|||++|-.++ ...  +...++++..+..+.               +...+...+...++ ..+
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA-~~~--~~~~~~i~~~~l~~~---------------~~g~~~~~l~~~f~-~A~  101 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIA-GEA--KVPFFTISGSDFVEM---------------FVGVGASRVRDMFE-QAK  101 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHH-HHH--TCCEEEECSCSSTTS---------------CCCCCHHHHHHHHH-HHH
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHH-HHc--CCCEEEEEhHHhhhc---------------chhHHHHHHHHHHH-HHH
Confidence            44455678899999999999965554 433  467788876543321               01122222223333 234


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ...+.+++||.+-.+.+.......-+.   ....+.+..++..+..+....++.||.++...+.+
T Consensus       102 ~~~P~il~iDeiD~l~~~r~~~~~~~~---~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~l  163 (256)
T d1lv7a_         102 KAAPCIIFIDEIDAVGRQRGAGLGGGH---DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL  163 (256)
T ss_dssp             TTCSEEEEETTHHHHTCCCSTTSCCTT---CHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred             HcCCEEEEEEChhhhCccCCCCCCCCc---HHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccC
Confidence            567889999999887643221111111   12233445555554433334556777676665544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=5.6e-05  Score=68.16  Aligned_cols=89  Identities=17%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALEIADR  215 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~  215 (440)
                      ..++.++||+|+||||.+.++++.+.+.+.++.+++..- +..       .+++.+|+.+.  ...++.....+......
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt-~R~gA~eQL~~~a~~l~i~~~--~~~~~~d~~~~~~~~~~   87 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVI--SHSEGADPAAVAFDAVA   87 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEE--CCSTTCCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc-cccchhHHHHHHhhhcCcccc--ccCCCCcHHHHHHHHHH
Confidence            458899999999999999999999988888888887652 222       15566665431  12233445555554444


Q ss_pred             HHhcCCcceEEEecccccC
Q 013567          216 MCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       216 l~~~~~~~lvVIDsl~~l~  234 (440)
                      .....+.++|+||......
T Consensus        88 ~~~~~~~d~ilIDTaGr~~  106 (213)
T d1vmaa2          88 HALARNKDVVIIDTAGRLH  106 (213)
T ss_dssp             HHHHTTCSEEEEEECCCCS
T ss_pred             HHHHcCCCEEEEecccccc
Confidence            4445678999999987554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=4.9e-05  Score=70.69  Aligned_cols=126  Identities=21%  Similarity=0.195  Sum_probs=68.0

Q ss_pred             cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          137 GGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       137 gGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      ..|+++..-+.|+||||+|||+|+-.++..+   +...++++...     +   .+        ......++.+..+-..
T Consensus        35 ~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~~~-----l---~~--------~~~~~~~~~l~~~f~~   95 (265)
T d1r7ra3          35 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE-----L---LT--------MWFGESEANVREIFDK   95 (265)
T ss_dssp             HCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECHHH-----H---HT--------SCTTTHHHHHHHHHHH
T ss_pred             hCCCCCCCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEHHH-----h---hh--------ccccchHHHHHHHHHH
Confidence            3689988899999999999999955554433   34555554211     0   00        0011222222222222


Q ss_pred             HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      .+...+.+++||.+-.+........  ++ ......+.+...+..+..+....++.||.+++..+.+.
T Consensus        96 A~~~~p~il~ideid~l~~~~~~~~--~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld  160 (265)
T d1r7ra3          96 ARQAAPCVLFFDELDSIAKARGGNI--GD-GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID  160 (265)
T ss_dssp             HHHTCSEEEEESSGGGTCCHHHHCC--CT-THHHHHHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred             HHhcCCcceeHHhhhhccccCCCcC--CC-CcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCC
Confidence            3345788999999998885322111  11 11122334455555555555666788888887766553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.70  E-value=0.00011  Score=65.97  Aligned_cols=88  Identities=19%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      ..++.++||+|+||||.+.++++.+.+.+.++.+++..-..    ++  .+++.+|+.+.  ....+..........-..
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~--~~~~~~~~~~~~~~a~~~   89 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY--GEPGEKDVVGIAKRGVEK   89 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEE--CCTTCCCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCccee--ecccchhhhHHHHHHHHH
Confidence            45899999999999999999999888888889888765221    11  15666666532  122333444444333233


Q ss_pred             HhcCCcceEEEecccc
Q 013567          217 CRSGAIDLICVDSVSA  232 (440)
Q Consensus       217 ~~~~~~~lvVIDsl~~  232 (440)
                      ....+.++|+||....
T Consensus        90 ~~~~~~d~IlIDTaGr  105 (211)
T d1j8yf2          90 FLSEKMEIIIVDTAGR  105 (211)
T ss_dssp             HHHTTCSEEEEECCCS
T ss_pred             hhccCCceEEEecCCc
Confidence            3345789999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.62  E-value=4.3e-05  Score=70.45  Aligned_cols=123  Identities=16%  Similarity=0.129  Sum_probs=60.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR  218 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~  218 (440)
                      |++.-.-+.++||||+|||++|-.++..   .+...++++....    ....+|            ..+..+..+-...+
T Consensus        38 g~~~~~giLl~GppGtGKT~la~aia~~---~~~~~~~i~~~~l----~~~~~g------------~~~~~l~~~f~~a~   98 (247)
T d1ixza_          38 GARIPKGVLLVGPPGVGKTHLARAVAGE---ARVPFITASGSDF----VEMFVG------------VGAARVRDLFETAK   98 (247)
T ss_dssp             TCCCCSEEEEECCTTSSHHHHHHHHHHH---TTCCEEEEEHHHH----HHSCTT------------HHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEecCCCCChhHHHHHHHHH---cCCCEEEEEhHHh----hhcccc------------HHHHHHHHHHHHHH
Confidence            4444456899999999999996555543   2456777754211    000011            11222222222234


Q ss_pred             cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567          219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI  283 (440)
Q Consensus       219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i  283 (440)
                      ...+.+++||.+-.+........ .+.  .....+.+..++..+..+-...++.||.++...+.+
T Consensus        99 ~~~p~Ii~iDeid~l~~~r~~~~-~~~--~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~l  160 (247)
T d1ixza_          99 RHAPCIVFIDEIDAVGRKRGSGV-GGG--NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL  160 (247)
T ss_dssp             TSSSEEEEEETHHHHHC------------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred             HcCCEEEEEEChhhhCccCCCCC-CCC--cHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccc
Confidence            45678999999887764221111 011  011233444555444433334555666555544444

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.60  E-value=9.4e-05  Score=66.49  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceE
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLI  225 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lv  225 (440)
                      +.|+||+|+|||.|+..++..+...+..++|++........ ...+          ......+..+.++      ..+++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~------~~dll  101 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM-VEHL----------KKGTINEFRNMYK------SVDLL  101 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HHHH----------HHTCHHHHHHHHH------TCSEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHH-HHHH----------HccchhhHHHHHh------hccch
Confidence            67999999999999767777777788889999765321111 1110          0112222222222      57899


Q ss_pred             EEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          226 CVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       226 VIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                      +||.+..+.....                ....+-.+...+.+.+..+|+++...
T Consensus       102 ~iDDi~~i~~~~~----------------~~~~lf~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2         102 LLDDVQFLSGKER----------------TQIEFFHIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             EEECGGGGTTCHH----------------HHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhhhhhhhcCchH----------------HHHHHHHHHHHHhhccceEEEecCCc
Confidence            9999988763111                23345566777788899999987753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00013  Score=67.25  Aligned_cols=122  Identities=25%  Similarity=0.354  Sum_probs=63.9

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      .|+++-+-+.|+||||+|||+++- .++...  +...++++.......    .            ....+..+..+-...
T Consensus        33 ~g~~~~~giLL~GppGtGKT~l~~-ala~~~--~~~~~~i~~~~l~~~----~------------~g~~~~~l~~~f~~A   93 (258)
T d1e32a2          33 IGVKPPRGILLYGPPGTGKTLIAR-AVANET--GAFFFLINGPEIMSK----L------------AGESESNLRKAFEEA   93 (258)
T ss_dssp             CCCCCCCEEEEECCTTSSHHHHHH-HHHHHT--TCEEEEECHHHHTTS----C------------TTHHHHHHHHHHHHH
T ss_pred             CCCCCCceeEEecCCCCCchHHHH-HHHHHh--CCeEEEEEchhhccc----c------------cccHHHHHHHHHHHH
Confidence            477666779999999999999954 443332  345555543211110    0            001111122222223


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +...+.++++|.+-.+.+...- +. +.    ...+.+...+..+.......++.||.++...+.+.
T Consensus        94 ~~~~p~il~iDeid~l~~~r~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld  154 (258)
T d1e32a2          94 EKNAPAIIFIDELDAIAPKREK-TH-GE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID  154 (258)
T ss_dssp             HHTCSEEEEESSGGGTCCHHHH-CC-CT----THHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSC
T ss_pred             HhcCCeEEEehhhhhhccCCCC-CC-Cc----hHHHHHHHhccccccccccCCccEEEeCCCccccc
Confidence            3467889999999999864321 11 11    11223333333333333345667777776665553

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=7.5e-05  Score=63.01  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ++.|+|++|||||||+-+++..+...+..+..+....
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~   40 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   40 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccc
Confidence            7999999999999998888888887777777765543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=0.0016  Score=56.50  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ++.++|.|||||||+|-+++..+...+..+..++.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~   38 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV   38 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc
Confidence            78999999999999988887666555666665654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00012  Score=61.94  Aligned_cols=37  Identities=32%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +.+.|+||||+|||||+.+++..+...+..+.++...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~   38 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE   38 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            4689999999999999888887777776666555433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.18  E-value=0.00021  Score=60.84  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +++.|+|++|||||||+-+++..+...+..+..+..+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d   38 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   38 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            4889999999999999888888888888888877544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.03  E-value=0.00061  Score=64.84  Aligned_cols=125  Identities=19%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567          129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      .|.+...+ |.-++..+..++||||+|||.||-.++..+- .+..-+.+++.+....               +.......
T Consensus       110 ~~~~~~~~-~~~~~~g~~l~~G~pG~GKT~la~ala~~~~-~~~~~~~~~~~~~~~~---------------~~G~~e~~  172 (321)
T d1w44a_         110 SPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEALG-GKDKYATVRFGEPLSG---------------YNTDFNVF  172 (321)
T ss_dssp             CCEEEEET-TEEEESEEEEEECSSSSCHHHHHHHHHHHHH-TTSCCEEEEBSCSSTT---------------CBCCHHHH
T ss_pred             chHHHHHh-hcccCCceEEEECCCCccHHHHHHHHHHHhc-CCCCeEEEEhhHhhhc---------------ccchHHHH
Confidence            44555556 3333444777899999999999766655543 2222233444332211               11112222


Q ss_pred             HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013567          209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ  278 (440)
Q Consensus       209 ~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inh  278 (440)
                      +.+..++...   +.+++||.+-.+.+...-.+     ..+...|.+.+.+..+-.+....++.||..|.
T Consensus       173 ~~~~f~~a~~---~~ilf~DEid~~~~~r~~~~-----~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN  234 (321)
T d1w44a_         173 VDDIARAMLQ---HRVIVIDSLKNVIGAAGGNT-----TSGGISRGAFDLLSDIGAMAASRGCVVIASLN  234 (321)
T ss_dssp             HHHHHHHHHH---CSEEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             HHHHHHHHhh---ccEEEeehhhhhccccccCC-----CCCcchhhhhhhhhhccccccCCCeEEEEeCC
Confidence            3333333322   45999999999875332111     11122355777888887777778888888876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00022  Score=61.50  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +|. +|.++.|+|+|||||||+|-.++..+......+.+++.
T Consensus        15 ~~~-~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~   55 (195)
T d1x6va3          15 GGF-RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   55 (195)
T ss_dssp             CSC-CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred             cCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhH
Confidence            566 78899999999999999987777666555555555543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.00  E-value=0.00041  Score=57.44  Aligned_cols=33  Identities=27%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +++.|+|+|||||||||-.++.    ...++.+++..
T Consensus         3 klIii~G~pGsGKTTla~~L~~----~~~~~~~~~~d   35 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA----KNPGFYNINRD   35 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH----HSTTEEEECHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH----hCCCCEEechH
Confidence            4789999999999999765543    33467777654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=96.91  E-value=0.0049  Score=51.20  Aligned_cols=121  Identities=15%  Similarity=0.170  Sum_probs=74.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      |.+..|+||-.|||||-.++.+.+....+.+++.|........  ....+.|.......+.   +..++++.+.......
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~~---~~~~~~~~~~~~~~~~   78 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVE---SAPEILNYIMSNSFND   78 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEES---STHHHHHHHHSTTSCT
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccceEEcccCceeeeEEec---cchhhHHHHHhhcccc
Confidence            7899999999999999889999999888999998876543211  1222233333333222   2344444433221123


Q ss_pred             CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      .+++|.||..+-+..  .                    +..+...+.+.|.+|++..=..+--+..|+
T Consensus        79 ~~dvI~IDE~QFf~d--~--------------------i~~~~~~~~~~g~~Viv~GLd~Df~~~~F~  124 (139)
T d2b8ta1          79 ETKVIGIDEVQFFDD--R--------------------ICEVANILAENGFVVIISGLDKNFKGEPFG  124 (139)
T ss_dssp             TCCEEEECSGGGSCT--H--------------------HHHHHHHHHHTTCEEEEECCSBCTTSSBCT
T ss_pred             CcCEEEechhhhcch--h--------------------HHHHHHHHHhcCceEEEEEeccccccCcCc
Confidence            678999999886631  1                    122344455679999988766654444443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=96.90  E-value=0.00049  Score=64.21  Aligned_cols=110  Identities=19%  Similarity=0.224  Sum_probs=67.8

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhh---hhccccc
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSK---ALGVDVE  196 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~---~lGv~~~  196 (440)
                      .+.+.||+..+|-++  =+-+|+-+.|+|++|+|||+|+++++.+.......++|.-.-+.....  +.+   ..+....
T Consensus        48 ~~~l~TGi~~ID~l~--pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~  125 (276)
T d1fx0a3          48 YEPLQTGLIAIDAMI--PVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEY  125 (276)
T ss_dssp             CSBCCCSCTTTTTTS--CCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGS
T ss_pred             CccccccceEEeccc--cccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeeeecchhHHHHHHHHhhccCCccee
Confidence            356889999999987  455889999999999999999887766655555566775432222111  111   1122111


Q ss_pred             ceeecCC-C--------CHHHHHHHHHHHHhcCCcceEEEeccccc
Q 013567          197 NLIVCQP-D--------NGEMALEIADRMCRSGAIDLICVDSVSAL  233 (440)
Q Consensus       197 ~l~i~~~-~--------~~ee~l~~i~~l~~~~~~~lvVIDsl~~l  233 (440)
                      -+.+... +        ...-.+.+++.+...+.--++++||++.+
T Consensus       126 tvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~  171 (276)
T d1fx0a3         126 TIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQ  171 (276)
T ss_dssp             EEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             eeecccccCccHHHHHHHHHHHHHHHHHHHHcCCceeEEeeccHHH
Confidence            2222211 1        12344566676666665567788998765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.84  E-value=0.00038  Score=58.77  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .|+++.|.|+|||||||+|..+..   +.+...++++..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~---~lg~~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALAN---LPGVPKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT---CSSSCEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH---HhCCCEEEecHH
Confidence            488999999999999999643322   234566666653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.80  E-value=0.00047  Score=58.04  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL  170 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~  170 (440)
                      .+|.++.|+|+|||||||+|-.++..+...
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            478899999999999999987766666443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.78  E-value=0.00056  Score=57.94  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=25.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      .+++.|.|+|||||||++-.+...+...+..+..+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   35 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV   35 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            36899999999999999666665555455455444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0038  Score=55.77  Aligned_cols=30  Identities=20%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAM  175 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv  175 (440)
                      +.|+||||+||||++..++..+...+....
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~~~~~~~~   65 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIFGPGVYRL   65 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred             EEEECCCCCCHHHHHHHHHHhhcCcccccc
Confidence            679999999999998887777654443333

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.67  E-value=0.00078  Score=57.81  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +++|.|++||||||||-.+...+...+-.+..++.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~   58 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM   58 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccccccceeccc
Confidence            67899999999999987777666655555655543

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.012  Score=48.37  Aligned_cols=115  Identities=19%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENLIVCQPDNGEMALEIADRMCRS  219 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~  219 (440)
                      +|.+..|+||-.|||||-.++.+......+..++.|.........  ....-+.....+.+.   ...+.....      
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------   71 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC---LLRDVAQEA------   71 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC--------------CEEES---SGGGGHHHH------
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccccCCcceeeecCCCcceeeeee---chhhhhhhh------
Confidence            689999999999999999999999888888889988755332211  111111111112221   112222211      


Q ss_pred             CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                      ..+++|.||..+-+..                   +.+..    ..+.+.|.+|++-.=..+--+..|+
T Consensus        72 ~~~d~I~IDEaQFf~d-------------------l~~~~----~~~~~~~~~Viv~GLd~Df~~~~F~  117 (133)
T d1xbta1          72 LGVAVIGIDEGQFFPD-------------------IVEFC----EAMANAGKTVIVAALDGTFQRKPFG  117 (133)
T ss_dssp             HTCSEEEESSGGGCTT-------------------HHHHH----HHHHHTTCEEEEECCSBCTTSSBCT
T ss_pred             cccceEEeehhHHHHH-------------------HHHHH----HHHHhcCCcEEEEEeccccccCcch
Confidence            2578999999886631                   11222    2233568998877665554444443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0029  Score=57.33  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .++++.|+|||.+||||+.-++.....
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~   66 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIAL   66 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHH
Confidence            357999999999999999555554443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00059  Score=57.42  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      ..+.++.|.|+|||||||+|-.++..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999966655443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.61  E-value=0.0006  Score=57.47  Aligned_cols=25  Identities=40%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      |+|-.+.|+|+|||||||+|-.+..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            6788999999999999999644443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.60  E-value=0.0022  Score=51.46  Aligned_cols=41  Identities=22%  Similarity=0.171  Sum_probs=30.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHH-HHhhcCCcEEEEcCC
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIA-EVQKLGGNAMLVDAE  180 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~-~~~~~~~~vv~id~E  180 (440)
                      +.+|+.+.|.+|+|+|||..++..+. .....+..++++...
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~   45 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPT   45 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecc
Confidence            56799999999999999987765544 444556667776543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.002  Score=57.06  Aligned_cols=85  Identities=12%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC--CChh-hhhhhcccccceeecCC-----CCHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA--FDPS-YSKALGVDVENLIVCQP-----DNGEMALEIADRM  216 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~--~~~~-~a~~lGv~~~~l~i~~~-----~~~ee~l~~i~~l  216 (440)
                      -+.|+||+|+||||+|..++..+......     ....  .... ..-.-+..++-..+...     ...+++.+..+.+
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~  100 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLLCQQPQ-----GHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKL  100 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCSSCB-----TTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhccccccc-----ccccccccchhhhhhhccccccchhhhhhcccccccchhhHHhhhh
Confidence            48899999999999988888776532211     0000  0111 11111222222222211     2345555555543


Q ss_pred             H---hcCCcceEEEecccccC
Q 013567          217 C---RSGAIDLICVDSVSALT  234 (440)
Q Consensus       217 ~---~~~~~~lvVIDsl~~l~  234 (440)
                      .   ..++.++++||.+..+.
T Consensus       101 ~~~~~~~~~kviIide~d~l~  121 (207)
T d1a5ta2         101 NEHARLGGAKVVWVTDAALLT  121 (207)
T ss_dssp             TSCCTTSSCEEEEESCGGGBC
T ss_pred             hhccccCccceEEechhhhhh
Confidence            2   23457799999987775

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.57  E-value=0.0013  Score=57.32  Aligned_cols=126  Identities=8%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccc----ccceeec-CCCCHHHHHHHHHHHHhc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD----VENLIVC-QPDNGEMALEIADRMCRS  219 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~----~~~l~i~-~~~~~ee~l~~i~~l~~~  219 (440)
                      ++.|.|+..||||.+|-+++    .....++|+-+-...+..+.+++...    +...... .+....+.+.   .  ..
T Consensus         1 iiLVtGGarSGKS~~AE~l~----~~~~~~~YiAT~~~~D~em~~RI~~Hr~rR~~~w~tiE~~~~l~~~l~---~--~~   71 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI----GDAPQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLIT---A--DL   71 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH----CSCSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSC---T--TS
T ss_pred             CEEEECCCCccHHHHHHHHH----hcCCCcEEEEccCCCCHHHHHHHHHHHhcCcCCCEEecccccHHHHHH---h--hc
Confidence            57899999999999987753    44678999988777776544333211    1222211 1222222211   1  12


Q ss_pred             CCcceEEEecccccCCchhhcc----cchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          220 GAIDLICVDSVSALTPRAEIEG----EIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       220 ~~~~lvVIDsl~~l~~~~el~~----~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                      ...+.++||+++.+....-+..    +............+.+.+..|...+++.+.++|+++..
T Consensus        72 ~~~~~vLlDclt~~l~N~l~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~ViVsnE  135 (180)
T d1c9ka_          72 APDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNE  135 (180)
T ss_dssp             CTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred             CcccchhhhhhhHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence            3467899999998764221110    11111112223345555666777777777777777654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.53  E-value=0.00056  Score=57.16  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=23.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .++.|+|||||||||+|-.++..+    ....++++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~----~~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS----SSEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc----CCCEEEeh
Confidence            478999999999999976555432    34556554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.51  E-value=0.0093  Score=53.11  Aligned_cols=91  Identities=8%  Similarity=0.015  Sum_probs=44.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHH-HHhcC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADR-MCRSG  220 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~-l~~~~  220 (440)
                      ..+.|+||||+|||+++..++..+.. .....+++......... ......................+...+.. .....
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD  123 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcc
Confidence            47889999999999996554444432 23345555544333322 11111111111112223344444443333 33344


Q ss_pred             CcceEEEecccccC
Q 013567          221 AIDLICVDSVSALT  234 (440)
Q Consensus       221 ~~~lvVIDsl~~l~  234 (440)
                      ....+++|.+..+.
T Consensus       124 ~~~~~~~~~~d~~~  137 (276)
T d1fnna2         124 LYMFLVLDDAFNLA  137 (276)
T ss_dssp             CCEEEEEETGGGSC
T ss_pred             cccccchhHHHHhh
Confidence            55666677655543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.50  E-value=0.0028  Score=59.13  Aligned_cols=46  Identities=24%  Similarity=0.432  Sum_probs=39.7

Q ss_pred             ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      -+.+.||+..+|-++  =+-+|+-+.|+|++|+|||+|+.+++.+..+
T Consensus        49 ~e~l~TGIraID~l~--pig~GQr~~If~~~g~GKt~ll~~~~~~~~~   94 (285)
T d2jdia3          49 REPMQTGIKAVDSLV--PIGRGQRELIIGDRQTGKTSIAIDTIINQKR   94 (285)
T ss_dssp             CSBCCCSCHHHHHHS--CCBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred             CcccccCceEEeccc--CccCCCEEEeecCCCCChHHHHHHHHHhHHh
Confidence            456899999999988  4568999999999999999998888877653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0029  Score=56.95  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .+.|+||||+||||+|..++..+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            678999999999999876666554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.0018  Score=60.17  Aligned_cols=56  Identities=29%  Similarity=0.417  Sum_probs=45.6

Q ss_pred             CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEc
Q 013567          121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVD  178 (440)
Q Consensus       121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id  178 (440)
                      ..+.+.||+..+|-++  =+-+|+-..|+|++|+|||+|+.+++.+.++.. .-++|.-
T Consensus        48 i~~~l~TGIraID~l~--pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~  104 (276)
T d2jdid3          48 EQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  104 (276)
T ss_dssp             CCCEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred             CCcccccCceeeeeec--cccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEE
Confidence            3457899999999998  455899999999999999999999998876544 3466654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.45  E-value=0.00086  Score=56.28  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .+++.|.|+|||||||+|-.++..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999997655544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.016  Score=50.74  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=50.1

Q ss_pred             HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC---cEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567          132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG---NAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM  208 (440)
Q Consensus       132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~---~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee  208 (440)
                      |-+++.-+  .+.-+.|+||||+||||+|..++........   .++++..+..                    ....++
T Consensus         6 l~~~i~~~--~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~--------------------~I~Id~   63 (198)
T d2gnoa2           6 LKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE--------------------NIGIDD   63 (198)
T ss_dssp             HHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS--------------------CBCHHH
T ss_pred             HHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC--------------------CCCHHH
Confidence            33444334  3568999999999999998888865543221   2444443210                    113556


Q ss_pred             HHHHHHHHHh---cCCcceEEEecccccC
Q 013567          209 ALEIADRMCR---SGAIDLICVDSVSALT  234 (440)
Q Consensus       209 ~l~~i~~l~~---~~~~~lvVIDsl~~l~  234 (440)
                      +.+..+.+..   .++.++++||....|.
T Consensus        64 IR~i~~~~~~~~~~~~~KviIId~ad~l~   92 (198)
T d2gnoa2          64 IRTIKDFLNYSPELYTRKYVIVHDCERMT   92 (198)
T ss_dssp             HHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred             HHHHHHHHhhCcccCCCEEEEEeCccccc
Confidence            6665554432   2466899999987775

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.38  E-value=0.00077  Score=56.81  Aligned_cols=23  Identities=43%  Similarity=0.522  Sum_probs=19.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.++|.|+||+||||||-.++..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999996655543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.36  E-value=0.00093  Score=55.95  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|.|+|||||||+|-.++..
T Consensus         7 I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999997655543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.34  E-value=0.0072  Score=55.66  Aligned_cols=44  Identities=14%  Similarity=0.144  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHh----hcCCcEEEEcCCCCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQ----KLGGNAMLVDAEHAFD  184 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~----~~~~~vv~id~E~~~~  184 (440)
                      +...++.|+|..|.||||||.+++....    ....+++|++.....+
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~   89 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAP   89 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCST
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCC
Confidence            3467999999999999999888876532    1235688887655443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.32  E-value=0.0031  Score=57.44  Aligned_cols=73  Identities=23%  Similarity=0.277  Sum_probs=40.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHH-HHHHHHHhcCCc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMAL-EIADRMCRSGAI  222 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l-~~i~~l~~~~~~  222 (440)
                      .-+.|+||||+|||++|-.++.. .  +...+.++.-+..       .|.        ...+....+ ...+. .....+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~-~--~~~~~~i~~~~~~-------~g~--------~~~~~~~~i~~if~~-A~~~~p  101 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE-S--NFPFIKICSPDKM-------IGF--------SETAKCQAMKKIFDD-AYKSQL  101 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH-H--TCSEEEEECGGGC-------TTC--------CHHHHHHHHHHHHHH-HHTSSE
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc-c--ccccccccccccc-------ccc--------cccchhhhhhhhhhh-hhhccc
Confidence            45889999999999996555443 2  3455555432110       000        000111112 12222 234567


Q ss_pred             ceEEEecccccCC
Q 013567          223 DLICVDSVSALTP  235 (440)
Q Consensus       223 ~lvVIDsl~~l~~  235 (440)
                      .+++||.+-.+.+
T Consensus       102 ~il~iDEid~l~~  114 (246)
T d1d2na_         102 SCVVVDDIERLLD  114 (246)
T ss_dssp             EEEEECCHHHHTT
T ss_pred             ceeehhhhhhHhh
Confidence            8999999988765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.30  E-value=0.0068  Score=57.41  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE--cCCCCCC-------hhhhhhhcccccceeecCCC---CHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV--DAEHAFD-------PSYSKALGVDVENLIVCQPD---NGEMA  209 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i--d~E~~~~-------~~~a~~lGv~~~~l~i~~~~---~~ee~  209 (440)
                      +.-.++|.|+||+|||||.-+++..+...+.++..+  |......       ..++..++.+ .+.++.+..   ....+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~-~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAID-RNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGC-TTEEEECCCCCSSHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcc-cceeeccccccccccch
Confidence            456899999999999999777777766666665554  4332221       1223333322 244443322   22222


Q ss_pred             HH---HHHHHHhcCCcceEEEecccccC
Q 013567          210 LE---IADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       210 l~---~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      -.   ..-.+++..+.++++|.++..-.
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq  156 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQ  156 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhh
Confidence            22   22233455689999999987544

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.29  E-value=0.023  Score=47.12  Aligned_cols=118  Identities=17%  Similarity=0.224  Sum_probs=70.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEMALEIADRMC  217 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~  217 (440)
                      ..|.+..|+||-.|||||-.++.+.+....+.+++.|.......  . ....+.|...+-+.+.   +..++...   . 
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~---~~~~~~~~---~-   77 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIK---NSREILKY---F-   77 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEES---SSTHHHHH---C-
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccceeeecccceEEEEEec---chhhhhhh---h-
Confidence            36999999999999999999999999888888999887553221  1 1223333333222222   22222222   1 


Q ss_pred             hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567          218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG  288 (440)
Q Consensus       218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~  288 (440)
                       ...+++|.||..+-+..  .                +...+   .. +...|.+|++-.=..+--+..|+
T Consensus        78 -~~~~dvI~IDE~QFf~d--~----------------~~~~~---~~-l~~~g~~Viv~GLd~Df~~~~F~  125 (141)
T d1xx6a1          78 -EEDTEVIAIDEVQFFDD--E----------------IVEIV---NK-IAESGRRVICAGLDMDFRGKPFG  125 (141)
T ss_dssp             -CTTCSEEEECSGGGSCT--H----------------HHHHH---HH-HHHTTCEEEEEECSBCTTSCBCT
T ss_pred             -cccccEEEEeehhhccc--c----------------HHHHH---Hh-heeCCcEEEEEEeccccccCccc
Confidence             23589999999886642  0                11122   22 24568998887666554444443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.28  E-value=0.0047  Score=55.52  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +++.|+|||.+||||+.-++.....
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~i   60 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIAL   60 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHHHH
Confidence            5899999999999999555555443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.28  E-value=0.0014  Score=56.59  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=26.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      |+|--+.|.|||||||||+|-.++..+     +..+|+.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~-----g~~~i~~   34 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLAT   34 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeH
Confidence            677778899999999999987665543     5667765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0024  Score=59.64  Aligned_cols=46  Identities=26%  Similarity=0.217  Sum_probs=37.4

Q ss_pred             ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 013567          124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG  171 (440)
Q Consensus       124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~  171 (440)
                      ..++|...+|.++  =+-+|+-.+|+|++|+|||+|+.+++.+.....
T Consensus        26 ~~~~~~r~ID~l~--PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~   71 (289)
T d1xpua3          26 TEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH   71 (289)
T ss_dssp             STHHHHHHHHHHS--CCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHC
T ss_pred             cccccceeeeecc--cccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcC
Confidence            4567888999987  466899999999999999999777777665443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.22  E-value=0.0017  Score=58.56  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=23.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ..+.++||||+||||||..++..+   +.+.+.+++
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh---hcceEEEec
Confidence            458899999999999975555443   244566654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.21  E-value=0.0013  Score=56.88  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=24.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ..++.|.|||||||||+|-.++..+     +..+++.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~-----g~~~i~~   37 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSA   37 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH-----CCceEch
Confidence            4589999999999999976665443     4566664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.21  E-value=0.0019  Score=62.44  Aligned_cols=41  Identities=39%  Similarity=0.453  Sum_probs=31.9

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      -|+|.+..+.++||||+|||+||..++..+   +..++.+++.+
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~in~s~  189 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPL  189 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCT
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEECcc
Confidence            699999999999999999999976665544   34566665443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0012  Score=54.34  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .+.|.|||||||||+|..++..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999966555443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.14  E-value=0.0028  Score=57.07  Aligned_cols=89  Identities=19%  Similarity=0.092  Sum_probs=42.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh--hhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS--YSKALGVDVENLIVCQPDNGEMALEIADRM  216 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~--~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l  216 (440)
                      ++.|+||||+|||+++..++..+...      ...++|++........  +..... ...................+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  126 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVR-QTGYPIQVRGAPALDILKALVDN  126 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHH-HHTCCCCCTTCCHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhh-hcccccccccchHHHHHHHHHHH
Confidence            45667999999999966665554321      2344555544332221  111110 00111111223334444433333


Q ss_pred             H-hcCCcceEEEecccccC
Q 013567          217 C-RSGAIDLICVDSVSALT  234 (440)
Q Consensus       217 ~-~~~~~~lvVIDsl~~l~  234 (440)
                      . ......++++|.+..+.
T Consensus       127 ~~~~~~~~~~iide~d~l~  145 (287)
T d1w5sa2         127 LYVENHYLLVILDEFQSML  145 (287)
T ss_dssp             HHHHTCEEEEEEESTHHHH
T ss_pred             HHhccCccccceeEEEEec
Confidence            3 33455677778776664

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0087  Score=56.75  Aligned_cols=92  Identities=12%  Similarity=0.125  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---------hhhhhhcccccceeecCCCC------H
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---------SYSKALGVDVENLIVCQPDN------G  206 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---------~~a~~lGv~~~~l~i~~~~~------~  206 (440)
                      +.-.++|+|+||+|||||.-+++......+.++..+....+...         .+...++.+ .+.++.+..+      .
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~-~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARA-EAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTC-TTEEEEEECC-----CH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccc-ccccccccccccccccc
Confidence            46689999999999999977777766666666655543322111         122222322 2333322111      1


Q ss_pred             HHHHHHHHHHHhcCCcceEEEecccccC
Q 013567          207 EMALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       207 ee~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      ......+-.++...+.++++|..+....
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq  159 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQ  159 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTT
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeeccccc
Confidence            1222223334455688999999876543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.13  E-value=0.0023  Score=54.23  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=25.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      +++.|.|+|||||||++-.+...+...+..+..++
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            47889999999999996555555544555565554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.0013  Score=56.53  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li  164 (440)
                      |.-.++.++|+|||||||+|-+++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456799999999999999976553

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0018  Score=56.20  Aligned_cols=35  Identities=14%  Similarity=0.229  Sum_probs=26.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++-.++.|.|||||||||+|-.++..+     +..||++.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~-----g~~~is~g   40 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAG   40 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEehh
Confidence            345689999999999999976664433     66778753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.07  E-value=0.0018  Score=55.66  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      |+++.|.||+||||||++-.++..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            899999999999999995444433

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0044  Score=54.83  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+|.++.|.|+.||||||++-.+...+...+..++++..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~   39 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF   39 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            478999999999999999976666666667778887763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.02  E-value=0.0035  Score=55.48  Aligned_cols=34  Identities=29%  Similarity=0.202  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ++.|.|++|||||||.-+++ .....+..++.++.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll-~~~~~~~~~~ivn~   35 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFG-RYLEDNYKVAYVNL   35 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHHTTTSCEEEEEC
T ss_pred             EEEEEcCCCCcHHHHHHHHH-HHHhhCCeEEEEec
Confidence            68999999999999955554 44445566776753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.01  E-value=0.0013  Score=57.19  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=27.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ..+.++.|.|||||||||+|-.++..     .+..+|++.+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~-----~g~~~is~g~   41 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQK-----YGYTHLSTGD   41 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHH-----TCCEEEEHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH-----hCCeeEeccH
Confidence            35689999999999999997666543     2566777543

>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Bacterial cell division inhibitor SulA
domain: Hypothetical protein PA3008
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.91  E-value=0.081  Score=42.32  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCC
Q 013567          145 IVEIFGP-ESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA  221 (440)
Q Consensus       145 ii~I~G~-~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~  221 (440)
                      ++++.++ .+.|=..|.+-++..+...  +.-++||+....+........|++++++.++++.+..+.++.+++.++.+.
T Consensus         4 ~~el~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~~~Gi~~~rll~v~~~~~~d~lwa~EqaL~sg~   83 (119)
T d1ofux_           4 FSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGR   83 (119)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred             cceecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHHHcCCCCCeEEEEeCCChHHHHHHHHHHHhcCC
Confidence            5666665 4444466656666666543  345899999888888888899999999999999999999999999999998


Q ss_pred             cceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Q 013567          222 IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL  276 (440)
Q Consensus       222 ~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~i  276 (440)
                      +..|+... ..+.                     ...+|+|.-.+++.+++.+++
T Consensus        84 ~~aVl~w~-~~l~---------------------~~~~RRLqlAA~~g~t~~~ll  116 (119)
T d1ofux_          84 SHTVVSWL-EPLS---------------------RAARKQLSRAAQLGQAQSLNI  116 (119)
T ss_dssp             EEEEEECC-SSCC---------------------HHHHHHHHHHHHHHTCEEEEE
T ss_pred             ccEEEEcC-CCCC---------------------hHHHHHHHHHHHhcCCEEEEE
Confidence            88888652 1111                     134677777788888888775

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.91  E-value=0.0031  Score=55.93  Aligned_cols=41  Identities=24%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEH  181 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~  181 (440)
                      .+|.++-|+|.|||||||+|-.+...+.. .+..++++|+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            67889999999999999998777766654 456788888764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.004  Score=54.61  Aligned_cols=39  Identities=28%  Similarity=0.405  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +|.++.|-|+.||||||++-.+...+...+..++.+..|
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~e   39 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE   39 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            589999999999999999655555555566555555444

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0028  Score=54.65  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      ++.|.|||||||||.|-.++..+     +..++++
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~-----g~~~i~~   32 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY-----GYTHLSA   32 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCceEcH
Confidence            68999999999999976665543     4566654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.76  E-value=0.0021  Score=61.05  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      ..+.-+.|+|++||||||| ++.+.....++...+.|  |+..+..+...-.  .-.+......+..++   ++..++ .
T Consensus       164 ~~~~nili~G~tgSGKTT~-l~al~~~i~~~~rivti--Ed~~El~l~~~~~--~~~~~~~~~~~~~~l---l~~~lR-~  234 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTY-IKSIMEFIPKEERIISI--EDTEEIVFKHHKN--YTQLFFGGNITSADC---LKSCLR-M  234 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHH-HHHHGGGSCTTCCEEEE--ESSCCCCCSSCSS--EEEEECBTTBCHHHH---HHHHTT-S
T ss_pred             HhCCCEEEEeeccccchHH-HHHHhhhcccccceeec--cchhhhhcccccc--cceeccccchhHHHH---HHHHhc-c
Confidence            3355689999999999999 78887777777777777  4433322110000  001111112344433   333333 5


Q ss_pred             CcceEEEeccc
Q 013567          221 AIDLICVDSVS  231 (440)
Q Consensus       221 ~~~lvVIDsl~  231 (440)
                      .++.++|..+.
T Consensus       235 ~pd~iivgEiR  245 (323)
T d1g6oa_         235 RPDRIILGELR  245 (323)
T ss_dssp             CCSEEEESCCC
T ss_pred             CCCcccCCccC
Confidence            79999998764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0028  Score=55.39  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++.|.|||||||||+|-.++..+     +-.|+++-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~-----gl~~iStG   35 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSG   35 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEECHH
Confidence            89999999999999976666555     44566643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.74  E-value=0.0027  Score=53.89  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +.|.|||||||||+|..++..+     +..+++..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~-----~~~~i~~~   32 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY-----GIPHISTG   32 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH-----CCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-----CCceechh
Confidence            6799999999999976655543     44566543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.0027  Score=56.67  Aligned_cols=31  Identities=32%  Similarity=0.309  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +.|+||||+||||+|.-++. ..  +...+.+++
T Consensus        38 ~L~~GPpGtGKT~lA~~la~-~~--~~~~~~~~~   68 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIAS-EL--QTNIHVTSG   68 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHH-HH--TCCEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHh-cc--CCCcccccC
Confidence            78999999999999654443 33  234455543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.012  Score=53.30  Aligned_cols=53  Identities=23%  Similarity=0.337  Sum_probs=37.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccc
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVEN  197 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~  197 (440)
                      .+|+.+.|.-|+||||++.+++..+++.+.+|+.+|....  ......+|.....
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~--~~l~~~lg~~~~~   72 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA--AHLSMTLNGSLNN   72 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-------------CC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC--CChHHHhCCcccc
Confidence            5788888999999999999999999999999999998743  2233445554433

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0087  Score=53.43  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD  184 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~  184 (440)
                      .+...+.|+||||+||||+|. .++...  +..+.+++..+...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~-~la~~~--~~~~~~~~~~~~~~   90 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAH-LVAQEL--GYDILEQNASDVRS   90 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHH-HHHHHT--TCEEEEECTTSCCC
T ss_pred             CCCceEEEECCCCCCHHHHHH-HHHHHH--Hhhhhccccccchh
Confidence            344578999999999999954 444433  34566777655443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.52  E-value=0.004  Score=53.26  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+.|.|||||||||+|-.++..+     +..+++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~-----g~~~is~   31 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY-----GTPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----CCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCceeeH
Confidence            46789999999999976666554     4456654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.50  E-value=0.0037  Score=53.31  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      -+.|.|||||||||+|-.++..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36788999999999987766554

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.49  E-value=0.017  Score=56.15  Aligned_cols=110  Identities=20%  Similarity=0.255  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA  221 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~  221 (440)
                      ++.++.|+||.||||||++..++..+.++...  .++.|++.+..+-   |+.  .+.+. ..........++.+++ .+
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~--i~tiEdPiE~~~~---~~~--q~~v~-~~~~~~~~~~l~~~lR-~d  227 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERN--ILTVEDPIEFDID---GIG--QTQVN-PRVDMTFARGLRAILR-QD  227 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC--EEEEESSCCSCCS---SSE--EEECB-GGGTBCHHHHHHHHGG-GC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcCCCce--EEEeccCcccccC---CCC--eeeec-CCcCCCHHHHHHHHHh-hc
Confidence            44599999999999999955555545444444  3555666544311   110  01111 1111112333444443 58


Q ss_pred             cceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567          222 IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG  284 (440)
Q Consensus       222 ~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig  284 (440)
                      +|+++|..+.....                ++   .     .--+...|..|+.+-|..+..+
T Consensus       228 PDvi~igEiRd~~t----------------a~---~-----a~~aa~tGhlV~tTlHa~~a~~  266 (401)
T d1p9ra_         228 PDVVMVGEIRDLET----------------AQ---I-----AVQASLTGHLVMSTLHTNTAVG  266 (401)
T ss_dssp             CSEEEESCCCSHHH----------------HH---H-----HHHHHHTTCEEEEEECCSSSHH
T ss_pred             CCEEEecCcCChHH----------------HH---H-----HHHHHhcCCeEEEEeccCchHh
Confidence            99999987653321                11   1     1123457899999999887554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.45  E-value=0.0037  Score=53.79  Aligned_cols=30  Identities=27%  Similarity=0.183  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+.|.|||||||||+|-.++..+     +..+++.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~-----~~~~is~   34 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY-----QLAHISA   34 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH-----CCEECCH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCcEEeh
Confidence            36799999999999975554433     4455543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.42  E-value=0.0077  Score=53.00  Aligned_cols=38  Identities=32%  Similarity=0.550  Sum_probs=34.5

Q ss_pred             CCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          143 GRIVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       143 G~ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      |+++.|+ +..|+||||++.+++..+...+.+|+++|..
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            6788888 5699999999999999999999999999975

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0043  Score=54.36  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++|.|++||||||||-.+...+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999976555544

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.33  E-value=0.011  Score=52.72  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .++++.|+||+|+|||+|+.+++...   +....|++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~---~~~~~~i~~~   63 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLR   63 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC---CCCeEEEEec
Confidence            46799999999999999977765543   4456666543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.30  E-value=0.0041  Score=54.02  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=23.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      --+.|.|||||||||+|..++..+     +..+|+..
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~-----g~~~is~g   38 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF-----ELKHLSSG   38 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB-----CCEEEEHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHH
Confidence            356788999999999977766543     46677653

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=95.21  E-value=0.014  Score=53.31  Aligned_cols=40  Identities=20%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCCCcHHH-HHHHHHHHHhhcCCcEEEEcC
Q 013567          140 LPKGRIVEIFGPESSGKTT-LALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTT-LaL~li~~~~~~~~~vv~id~  179 (440)
                      +.+|+.+.|.+|+|||||+ +...++......+..++++..
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~P   46 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAP   46 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEES
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEcc
Confidence            5789999999999999996 434666667777888998854

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.021  Score=51.33  Aligned_cols=85  Identities=8%  Similarity=-0.054  Sum_probs=53.9

Q ss_pred             CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhh----hhhhcccccceee-cC
Q 013567          128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSY----SKALGVDVENLIV-CQ  202 (440)
Q Consensus       128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~----a~~lGv~~~~l~i-~~  202 (440)
                      .+..+...+.-+  .-....|.|..|||||-.++..+..+...+..++++-.+....+..    .++++.-..++.+ ..
T Consensus        63 ~~~~i~~~~~~~--~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~  140 (233)
T d2eyqa3          63 AINAVLSDMCQP--LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR  140 (233)
T ss_dssp             HHHHHHHHHHSS--SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEEST
T ss_pred             HHHHHHHHHhcc--CccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccC
Confidence            344444444333  3357899999999999999999999999999999998776555442    2233333334443 33


Q ss_pred             CCCHHHHHHHHH
Q 013567          203 PDNGEMALEIAD  214 (440)
Q Consensus       203 ~~~~ee~l~~i~  214 (440)
                      ..+..+-.+...
T Consensus       141 ~~~~~~~~~~~~  152 (233)
T d2eyqa3         141 FRSAKEQTQILA  152 (233)
T ss_dssp             TSCHHHHHHHHH
T ss_pred             cccchhHHHHHH
Confidence            445444433333

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.19  E-value=0.0057  Score=53.59  Aligned_cols=31  Identities=32%  Similarity=0.405  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ++.|.|||||||||.|-.++..+     +..|+++-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l-----g~~~istG   35 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTG   35 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEECHH
Confidence            56788999999999976666555     44566643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.0079  Score=55.98  Aligned_cols=37  Identities=14%  Similarity=0.212  Sum_probs=27.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E  180 (440)
                      =+++|.|++||||||||..+...+...   ...++.++..
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D   67 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID   67 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred             EEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence            488999999999999987776665432   2356666643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.15  E-value=0.0054  Score=54.66  Aligned_cols=21  Identities=52%  Similarity=0.716  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +.++||||+||||+|. ++++.
T Consensus        38 ~Ll~GPpG~GKTtla~-~la~~   58 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAH-VIAHE   58 (239)
T ss_dssp             EEEECCTTSCHHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHHH-HHHHH
Confidence            6799999999999954 44443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.10  E-value=0.02  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.238  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      -++|+|.+++|||||+=+++..
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3789999999999996666543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.0061  Score=52.05  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +.|.|||||||||+|-.++..+     +..++++.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~-----g~~~i~~~   34 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF-----HAAHLATG   34 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCceEecc
Confidence            5678999999999976655433     55677653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0058  Score=51.95  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+.|.|||||||||.|-.++...     +..++++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~-----~~~~i~~   31 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY-----GIPQIST   31 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH-----CCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCceech
Confidence            36789999999999975554432     3455554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.96  E-value=0.0072  Score=53.47  Aligned_cols=23  Identities=39%  Similarity=0.445  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .+.|+||||+||||++.-++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            37899999999999966555544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.95  E-value=0.0096  Score=54.00  Aligned_cols=38  Identities=26%  Similarity=0.462  Sum_probs=34.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +.++|+|.-|+||||++.+++..+++.|.+|+.||...
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            36788999999999999999999999999999999864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.92  E-value=0.007  Score=56.76  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=26.2

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +.|++ -++++||||+|||.||..++..+   +...+.+++.+
T Consensus        46 ~~~~~-~iLl~GPpG~GKT~lAkalA~~~---~~~~~~i~~s~   84 (309)
T d1ofha_          46 EVTPK-NILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK   84 (309)
T ss_dssp             HCCCC-CEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred             CCCCc-eEEEECCCCCCHHHHHHHHhhcc---ccchhcccccc
Confidence            44554 45689999999999976655443   34566666543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.008  Score=53.02  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .|.++.|+||+|+|||||.-.++.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999999544443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.89  E-value=0.0062  Score=56.76  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      |++|+|++||||||++-.+...+...+-.++.+++..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Ds   42 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA   42 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence            8999999999999997666655555666778886653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.012  Score=51.74  Aligned_cols=50  Identities=20%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCC
Q 013567          129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAE  180 (440)
Q Consensus       129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E  180 (440)
                      +..|-.++..+-.+.  +.|+||||+||||++..++..+..   .......++..
T Consensus        21 ~~~l~~~i~~~~~~~--lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~   73 (237)
T d1sxjd2          21 VTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS   73 (237)
T ss_dssp             HHHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred             HHHHHHHHHcCCCCe--EEEECCCCCChHHHHHHHHHHHcCCcccccchhheecc
Confidence            445555554333222  789999999999997666655432   23455555543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.82  E-value=0.0074  Score=50.97  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+.|.|+|||||||+|-.++..+     +.-|+|+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L-----g~~~id~   33 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL-----GYEFVDT   33 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH-----TCEEEEH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-----CCCEEeh
Confidence            35688999999999965554433     3457765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.80  E-value=0.014  Score=51.13  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=32.5

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          145 IVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ++.|+ |..|+||||++.+++..+.+.+.+|+++|...
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            55565 78999999999999999999999999999864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.011  Score=55.52  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhh--cCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQK--LGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~--~~~~vv~id~E  180 (440)
                      -+++|+|++||||||||-.+...+.+  .+..+..++..
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            49999999999999996555444433  24557666654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.042  Score=50.37  Aligned_cols=126  Identities=12%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceee--cCCCC
Q 013567          129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIV--CQPDN  205 (440)
Q Consensus       129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i--~~~~~  205 (440)
                      +..|-.+|...  ...-+.|+|+||+|||+++-.++..+...+          .+... ..+-+.+++..+.-  .....
T Consensus        27 i~~l~~iL~r~--~k~n~lLVG~~GvGKTalv~~la~ri~~~~----------vp~~l~~~~i~~l~~~~liag~~~~g~   94 (268)
T d1r6bx2          27 LERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGD----------VPEVMADCTIYSLDIGSLLAGTKYRGD   94 (268)
T ss_dssp             HHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTC----------SCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred             HHHHHHHHhcC--ccCCcEEECCCCCcHHHHHHHHHHHHHhCC----------cccccccceeEEeeechHhccCccchh
Confidence            34444445322  234678999999999999777777666421          01110 01112222222221  11234


Q ss_pred             HHHHHH-HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          206 GEMALE-IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       206 ~ee~l~-~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                      .++.+. ++..+ ...+--+++||.+..++....-.+  +.          ..+..-|+.++.+-++.+|..+-.
T Consensus        95 ~e~r~~~i~~~~-~~~~~iIlfiDeih~l~~~g~~~g--~~----------~d~a~~Lkp~L~rg~i~vIgatT~  156 (268)
T d1r6bx2          95 FEKRFKALLKQL-EQDTNSILFIDEIHTIIGAGAASG--GQ----------VDAANLIKPLLSSGKIRVIGSTTY  156 (268)
T ss_dssp             HHHHHHHHHHHH-SSSSCEEEEETTTTTTTTSCCSSS--CH----------HHHHHHHSSCSSSCCCEEEEEECH
T ss_pred             HHHHHHHHHHHh-hccCCceEEecchHHHhcCCCCCC--cc----------ccHHHHhhHHHhCCCCeEEEeCCH
Confidence            454443 44443 334445888999999974222111  11          112233455566667888876654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.014  Score=50.39  Aligned_cols=35  Identities=14%  Similarity=0.085  Sum_probs=31.9

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          145 IVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       145 ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      .+-|+|- +|+||||++..++..+.+.|.+|++||.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            5678998 5999999999999999999999999985

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.73  E-value=0.012  Score=52.76  Aligned_cols=34  Identities=38%  Similarity=0.498  Sum_probs=28.8

Q ss_pred             ccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       126 ~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ..|++.|...|     +|+.+.++|++|+||||| ++.+.
T Consensus        83 ~~g~~~L~~~l-----~~kt~~~~G~SGVGKSTL-iN~L~  116 (225)
T d1u0la2          83 GMGIEELKEYL-----KGKISTMAGLSGVGKSSL-LNAIN  116 (225)
T ss_dssp             CTTHHHHHHHH-----SSSEEEEECSTTSSHHHH-HHHHS
T ss_pred             chhHhhHHHHh-----cCCeEEEECCCCCCHHHH-HHhhc
Confidence            47788888888     578999999999999999 66554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.014  Score=51.32  Aligned_cols=23  Identities=30%  Similarity=0.190  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +.|+||||+||||+|.-++..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67999999999999666655543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.014  Score=51.22  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +.|+||||+||||++..++..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67999999999999666665543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.50  E-value=0.011  Score=49.66  Aligned_cols=29  Identities=28%  Similarity=0.439  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA  179 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~  179 (440)
                      +.|.|+|||||||++-.++..+     +.-|+|+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l-----~~~~~d~   31 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL-----DLVFLDS   31 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-----TCEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCCEEec
Confidence            5677999999999954444433     4456654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.49  E-value=0.011  Score=49.62  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=15.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|.|+||+||||++-.++..
T Consensus         4 IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            345599999999996555433

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.44  E-value=0.031  Score=52.41  Aligned_cols=86  Identities=19%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA  221 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~  221 (440)
                      ..++.++||+|+|||.+|..++..+...+...+.+++.+-.+.. ..+-+|-.+...-..   ....+.    ..++...
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~---~~~~l~----~~~~~~p  125 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYE---EGGQLT----EAVRRRP  125 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHH----HHHHHCS
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcCcc---cCChHH----HHHHhCC
Confidence            33678999999999999877777666556677888876544433 233334332211100   011122    2233455


Q ss_pred             cceEEEecccccCC
Q 013567          222 IDLICVDSVSALTP  235 (440)
Q Consensus       222 ~~lvVIDsl~~l~~  235 (440)
                      ..+|++|.+-...+
T Consensus       126 ~~Vvl~DEieK~~~  139 (315)
T d1qvra3         126 YSVILFDEIEKAHP  139 (315)
T ss_dssp             SEEEEESSGGGSCH
T ss_pred             CcEEEEehHhhcCH
Confidence            67999999988763

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.021  Score=51.86  Aligned_cols=38  Identities=18%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +++.+.|.-|+||||++..++..+++.|.+++.+|...
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            48889999999999999999999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.11  Score=45.24  Aligned_cols=106  Identities=10%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcC-------CcEEEEcCCCCCChhhhhhhcccccceeecCCCCH---HH-HHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLG-------GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG---EM-ALEI  212 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~-------~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~---ee-~l~~  212 (440)
                      .-..|+|+||+|||+++-.++..+....       ..++.+|                ...+ +......   ++ +...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld----------------~~~L-iAg~~~rG~~E~rl~~i  106 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD----------------MGAL-VAGAKYRGEFEERLKGV  106 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC----------------HHHH-HTTTCSHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEee----------------HHHH-hccCCccHHHHHHHHHH
Confidence            4678999999999999777666665421       1111121                1111 1111222   22 2233


Q ss_pred             HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567          213 ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI  279 (440)
Q Consensus       213 i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl  279 (440)
                      +..+....+--+++||.+..+.......+..             .+..-|+..+.+-.+.+|..+-.
T Consensus       107 l~e~~~~~~~iILfIDeih~l~~~g~~~g~~-------------d~~~~Lkp~L~rg~l~~IgatT~  160 (195)
T d1jbka_         107 LNDLAKQEGNVILFIDELHTMVGAGKADGAM-------------DAGNMLKPALARGELHCVGATTL  160 (195)
T ss_dssp             HHHHHHSTTTEEEEEETGGGGTT------CC-------------CCHHHHHHHHHTTSCCEEEEECH
T ss_pred             HHHHhcCCCcEEEEcchHHHHhcCCCCCCcc-------------cHHHHHHHHHhCCCceEEecCCH
Confidence            4444333334478999999998422211110             11233456666777888877654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.30  E-value=0.026  Score=52.06  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=25.9

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcCCCCCcccccccCCC
Q 013567          389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSL  429 (440)
Q Consensus       389 ~~~~~~L~e~~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~  429 (440)
                      +...+||.+...-.+||...+|..+..+  ..-++.++++.
T Consensus       220 ~L~e~yle~~e~~~eel~~~l~~a~~~g--~i~PV~~GSA~  258 (276)
T d2bv3a2         220 NIMLKYLEGEEPTEEELVAAIRKGTIDL--KITPVFLGSAL  258 (276)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHHHTT--SCEEEEECBTT
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcC--cEEEEEEeECC
Confidence            3456677766556788888888877653  55566666554

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.28  E-value=0.026  Score=48.56  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +|.|.|..||||||++-.+...+...+..++++...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            689999999999999655555565667777776543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.15  E-value=0.0093  Score=51.14  Aligned_cols=19  Identities=42%  Similarity=0.571  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      +++|+|++||||||+| +++
T Consensus         5 IIgitG~~gSGKstva-~~l   23 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVA-ALL   23 (191)
T ss_dssp             EEEEEECTTSCHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            7899999999999994 444

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.14  E-value=0.019  Score=52.57  Aligned_cols=38  Identities=26%  Similarity=0.504  Sum_probs=34.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +.++|.|.-|+||||++.+++..+.+.|.+|+.||...
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            45778999999999999999999999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.94  E-value=0.015  Score=50.28  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++|+||+|+|||||+-.++...
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            37799999999999965555443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.015  Score=49.88  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .++|+||+|+|||||+-+++..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999996555444

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.023  Score=54.79  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      +-+.|+|++|+|||++...++..+...+.+++.+|...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~kg   88 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG   88 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCh
Confidence            35899999999999997788888888899999998775

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.0028  Score=53.67  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      +++|+|+|||||||+ +..+.-++
T Consensus        26 ~tvi~G~NGsGKSti-l~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTT-MAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHH-HHHHHHHH
T ss_pred             eEEEECCCCCCHHHH-HHHHHHHh
Confidence            678899999999999 77777665

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.75  E-value=0.014  Score=50.09  Aligned_cols=20  Identities=15%  Similarity=0.537  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++|+|+||+||||| ++.+.+
T Consensus        26 I~lvG~~n~GKSTL-in~L~g   45 (195)
T d1svia_          26 IALAGRSNVGKSSF-INSLIN   45 (195)
T ss_dssp             EEEEEBTTSSHHHH-HHHHHT
T ss_pred             EEEECCCCCCHHHH-HHHhcC
Confidence            99999999999999 666553

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.63  E-value=0.079  Score=44.70  Aligned_cols=19  Identities=42%  Similarity=0.630  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|+|.+||||| ++.+.
T Consensus         8 IaiiG~~naGKSTL-~n~L~   26 (179)
T d1wb1a4           8 LGIFGHIDHGKTTL-SKVLT   26 (179)
T ss_dssp             EEEEECTTSSHHHH-HHHHH
T ss_pred             EEEEeCCCCcHHHH-HHHHH
Confidence            89999999999999 55544

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.60  E-value=0.02  Score=54.45  Aligned_cols=23  Identities=35%  Similarity=0.741  Sum_probs=19.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+.+++|+||||||||++ +..+.
T Consensus        24 ~~~l~~i~G~NGsGKS~i-leAi~   46 (427)
T d1w1wa_          24 ESNFTSIIGPNGSGKSNM-MDAIS   46 (427)
T ss_dssp             TCSEEEEECSTTSSHHHH-HHHHH
T ss_pred             CCCEEEEECCCCCCHHHH-HHHHH
Confidence            345999999999999999 66554

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.57  E-value=0.019  Score=49.39  Aligned_cols=24  Identities=33%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .|.-+.|.|++|+||||+|+.++.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            356789999999999999887664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.53  E-value=0.024  Score=49.80  Aligned_cols=40  Identities=25%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .-+..|-.+| .|.|+-..+.|+|||++|||+||..++.-+
T Consensus        38 ~Fl~~l~~~l-~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          38 TFLGALKSFL-KGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHH-HTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            4456777777 788999999999999999999976655543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.024  Score=48.51  Aligned_cols=23  Identities=13%  Similarity=0.346  Sum_probs=18.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .+++.|+||+|+|||||+-+++.
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999554443

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.41  E-value=0.22  Score=41.61  Aligned_cols=92  Identities=22%  Similarity=0.307  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h--hhhhhcccccce---eecCCCCH-------H
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S--YSKALGVDVENL---IVCQPDNG-------E  207 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~--~a~~lGv~~~~l---~i~~~~~~-------e  207 (440)
                      +|-+ .|+=-+|=||||-|+-++.+++..|.+|+++.+-.....  .  ..+..++.....   +.......       .
T Consensus         2 kG~i-~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~   80 (157)
T d1g5ta_           2 RGII-IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM   80 (157)
T ss_dssp             CCCE-EEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred             CcEE-EEEeCCCCCcHHHHHHHHHHHhcCCCEEEEEEEecCCcccchhhhhcccCcEEEEecCCCcccCCChHHHHHHHH
Confidence            4544 445558999999999999999999999999876543221  1  222233322110   11111111       2


Q ss_pred             HHHHHHHHHHhcCCcceEEEecccccC
Q 013567          208 MALEIADRMCRSGAIDLICVDSVSALT  234 (440)
Q Consensus       208 e~l~~i~~l~~~~~~~lvVIDsl~~l~  234 (440)
                      +.++.+++.+.++..++||+|.+....
T Consensus        81 ~~~~~a~~~~~~~~~dllILDEi~~Ai  107 (157)
T d1g5ta_          81 AVWQHGKRMLADPLLDMVVLDELTYMV  107 (157)
T ss_dssp             HHHHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred             HHHHHHHHHhhcCccCEEeHHHHHHHH
Confidence            234455666778889999999987665

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.39  E-value=0.019  Score=49.50  Aligned_cols=24  Identities=33%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .|.-+.|.|++|+||||+|+.++.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            356789999999999999988764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.35  E-value=0.11  Score=50.08  Aligned_cols=113  Identities=13%  Similarity=0.133  Sum_probs=49.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecC--CCCHHHHH-HHHHHHHhcC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQ--PDNGEMAL-EIADRMCRSG  220 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~--~~~~ee~l-~~i~~l~~~~  220 (440)
                      -..|+|+||+|||+++-.++..+.....          +... -.+-+.+++..+.--.  ....++-+ .++..+....
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i~~~~v----------p~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~  114 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRIVKGDV----------PEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQ  114 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCS----------CTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTC
T ss_pred             CCeEECCCCCCHHHHHHHHHHHHHhCCC----------CHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCC
Confidence            3578899999999996656655543211          0000 0111222222222110  12233333 3444443333


Q ss_pred             CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567          221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR  280 (440)
Q Consensus       221 ~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~  280 (440)
                      +.-+++||.+..++......+   .          ..+..-|+..+.+-.+.+|..+...
T Consensus       115 ~~~ilfide~h~l~~~g~~~g---~----------~d~a~~Lkp~L~rg~~~~I~~tT~~  161 (387)
T d1qvra2         115 GEVILFIDELHTVVGAGKAEG---A----------VDAGNMLKPALARGELRLIGATTLD  161 (387)
T ss_dssp             SSEEEEECCC--------------------------------HHHHHTTCCCEEEEECHH
T ss_pred             CceEEEeccHHHHhcCCCCCC---c----------ccHHHHHHHHHhCCCcceeeecCHH
Confidence            445789999999984221111   0          1223445777777788888887653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.20  E-value=0.035  Score=50.99  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E~  181 (440)
                      -+.|.|+|||||||.+++-++.++..    ...+++++...
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~   66 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN   66 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccH
Confidence            36788999999999988877666542    24677776544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.20  E-value=0.025  Score=45.94  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|+||+|||||..+++.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            67999999999999555543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.17  E-value=0.033  Score=50.62  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh----cCCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQK----LGGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~----~~~~vv~id~E~  181 (440)
                      -..|.|+|||||||.+++-+..++.    +...+++++...
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn   56 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTN   56 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcH
Confidence            4678899999999987777666643    235788887653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.13  E-value=0.017  Score=52.90  Aligned_cols=23  Identities=43%  Similarity=0.761  Sum_probs=19.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .+++|+||||||||++ ++.+.-+
T Consensus        25 ~lnvlvG~NgsGKS~i-L~Ai~~~   47 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNI-IDAIKWV   47 (308)
T ss_dssp             SEEEEECCTTTCSTHH-HHHHHHT
T ss_pred             CeEEEECCCCCcHHHH-HHHHHHH
Confidence            3999999999999999 7666544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.071  Score=44.36  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|.+|+|||+|..+++.
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999666654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.85  E-value=0.024  Score=48.40  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .|.=+.|.|++|+||||+|+.++..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3667899999999999998877754

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.76  E-value=0.04  Score=48.82  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=35.3

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      .++.+|     .|+-+.|.+|+|+|||+.++-.+......+..++|+...
T Consensus        51 ~i~~~l-----~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt   95 (237)
T d1gkub1          51 WAKRIL-----RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPT   95 (237)
T ss_dssp             HHHHHH-----TTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESC
T ss_pred             HHHHHH-----CCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEecc
Confidence            456777     467888999999999998777676667777888888644

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.72  E-value=0.093  Score=47.83  Aligned_cols=41  Identities=22%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP  185 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~  185 (440)
                      ...|.|..|||||-.++..+..+...+..+++.-.+.....
T Consensus       106 ~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~  146 (264)
T d1gm5a3         106 NRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAI  146 (264)
T ss_dssp             CCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHH
T ss_pred             eeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhH
Confidence            45789999999999999999999999999999876655443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.68  E-value=0.036  Score=46.74  Aligned_cols=28  Identities=29%  Similarity=0.323  Sum_probs=23.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          140 LPKGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       140 i~~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      .++|.++.+.|+=|+|||||+-.++.++
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            4689999999999999999966666554

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.61  E-value=0.13  Score=42.75  Aligned_cols=20  Identities=30%  Similarity=0.478  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|.+|+|||||..+++.
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999666554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.52  E-value=0.043  Score=48.16  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQK  169 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~  169 (440)
                      +|.++.|-|+.||||||+ .+.+....+
T Consensus         2 kGk~I~iEG~DGsGKST~-~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQ-CNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHH-HHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHH-HHHHHHHHH
Confidence            699999999999999999 455555443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.04  Score=48.79  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ++.|.|.-|||||||..+++..  ..+.++..|-.|.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~   39 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF   39 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEecc
Confidence            7899999999999995555442  3566777777664

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.31  E-value=0.036  Score=47.88  Aligned_cols=46  Identities=24%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..++.++.     |+-+.|.+|+|+|||+.++-.+......+..++|+...
T Consensus        32 ~ai~~l~~-----~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~   77 (202)
T d2p6ra3          32 EAVEKVFS-----GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL   77 (202)
T ss_dssp             HHHHHHTT-----CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHHHc-----CCCEEEEcCCCCchhHHHHHHHHHHhhccCcceeeccc
Confidence            44666663     34577999999999998766666566667788988654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.27  E-value=0.016  Score=52.09  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=27.2

Q ss_pred             ccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       126 ~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      ..|++.|-..|     +|+.+.+.|++|+||||| ++.+.
T Consensus        85 ~~gl~~L~~~l-----~~~~~vl~G~SGVGKSSL-iN~L~  118 (231)
T d1t9ha2          85 QDSLADIIPHF-----QDKTTVFAGQSGVGKSSL-LNAIS  118 (231)
T ss_dssp             HTTCTTTGGGG-----TTSEEEEEESHHHHHHHH-HHHHC
T ss_pred             hhHHHHHHHhh-----ccceEEEECCCCccHHHH-HHhhc
Confidence            46777777776     467899999999999999 66554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.19  E-value=0.039  Score=44.57  Aligned_cols=18  Identities=33%  Similarity=0.449  Sum_probs=14.9

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHA  163 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~l  163 (440)
                      ++|+|+|++|||||..++
T Consensus         3 I~liG~~nvGKSSLln~l   20 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHML   20 (166)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            579999999999994443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.047  Score=52.08  Aligned_cols=37  Identities=27%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCcEEEEc
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQK----LGGNAMLVD  178 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~----~~~~vv~id  178 (440)
                      .+.++.|.||||+||||+...++..+.+    ++..++...
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            3579999999999999997777666543    333445444

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.05  E-value=0.032  Score=48.52  Aligned_cols=19  Identities=47%  Similarity=0.581  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      +++|+|+.||||||+| +++
T Consensus         4 iIgITG~igSGKStv~-~~l   22 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIA-NLF   22 (205)
T ss_dssp             EEEEECSTTSCHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            7899999999999994 444

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.03  E-value=0.051  Score=48.06  Aligned_cols=21  Identities=48%  Similarity=0.661  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      +++|.|.+.+||||| +..+..
T Consensus         7 ~IaIiGh~d~GKSTL-~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTL-LDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHH-HHHHHH
T ss_pred             EEEEEeCCCccHHHH-HHHHHh
Confidence            599999999999999 554443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=91.89  E-value=0.19  Score=45.73  Aligned_cols=40  Identities=15%  Similarity=0.129  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhcCCCCCcccccccCCC
Q 013567          388 RDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSL  429 (440)
Q Consensus       388 ~~~~~~~L~e~~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~  429 (440)
                      .+.+.+||.+.+...++|.+.++..+..|  .+-++.+++..
T Consensus       210 d~Lle~yle~~~l~~eel~~~l~~ai~~g--~i~PV~~GSA~  249 (267)
T d2dy1a2         210 EGLLEKYLEGEEVTGEALEKAFHEAVRRG--LLYPVALASGE  249 (267)
T ss_dssp             HHHHHHHHHTCCCCHHHHHHHHHHHHHTT--SCEEEEECBTT
T ss_pred             HHHHHHHhCCCcccHHHHHHHHHHHHHcC--cEEEEEeCcCC
Confidence            45677778776666888888888887754  55556555543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=91.86  E-value=0.045  Score=44.61  Aligned_cols=18  Identities=33%  Similarity=0.567  Sum_probs=15.1

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHA  163 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~l  163 (440)
                      ++|+|+||+|||||.-++
T Consensus         8 I~ivG~~~vGKSSLi~~~   25 (169)
T d1upta_           8 ILILGLDGAGKTTILYRL   25 (169)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999994433

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.17  Score=47.07  Aligned_cols=81  Identities=15%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID  223 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~  223 (440)
                      .+.++||+|+|||.||..++. ..  +.+.+.+|+.+-.+.. ..+-+|-.+...       +...-..+...+......
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~-~l--~~~~i~~d~s~~~~~~~~~~l~g~~~gy~-------g~~~~~~l~~~~~~~~~~  123 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK-AL--GIELLRFDMSEYMERHTVSRLIGAPPGYV-------GFDQGGLLTDAVIKHPHA  123 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-HH--TCEEEEEEGGGCSSSSCCSSSCCCCSCSH-------HHHHTTHHHHHHHHCSSE
T ss_pred             EEEEECCCcchhHHHHHHHHh-hc--cCCeeEeccccccchhhhhhhcccCCCcc-------ccccCChhhHHHHhCccc
Confidence            688999999999999766554 43  3456667755433222 122222221111       111111122233445677


Q ss_pred             eEEEecccccCC
Q 013567          224 LICVDSVSALTP  235 (440)
Q Consensus       224 lvVIDsl~~l~~  235 (440)
                      ++++|.+-...+
T Consensus       124 vvl~DeieKa~~  135 (315)
T d1r6bx3         124 VLLLDEIEKAHP  135 (315)
T ss_dssp             EEEEETGGGSCH
T ss_pred             hhhhcccccccc
Confidence            999999887753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.053  Score=47.17  Aligned_cols=19  Identities=47%  Similarity=0.623  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      +++|+|.+||||||+| +++
T Consensus         5 iIgitG~igSGKStv~-~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVA-NAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHH-HHH
T ss_pred             EEEEECCCcCCHHHHH-HHH
Confidence            7899999999999994 554

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.36  E-value=0.057  Score=46.12  Aligned_cols=21  Identities=43%  Similarity=0.681  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      .++|+|+|++||||| ++.+.+
T Consensus         5 ~V~lvG~~n~GKTSL-ln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSL-LTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHH-HHHHHH
T ss_pred             EEEEECCCCCCHHHH-HHHHhC
Confidence            689999999999999 555543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.01  E-value=0.054  Score=44.95  Aligned_cols=20  Identities=35%  Similarity=0.461  Sum_probs=16.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~l  163 (440)
                      --+.|+|.+|+|||||..++
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl   35 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQF   35 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35789999999999995544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.00  E-value=0.043  Score=45.96  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      -++|+|+|++||||| ++.+.
T Consensus         2 ~I~lvG~~nvGKSsL-in~l~   21 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTL-IYRLT   21 (184)
T ss_dssp             EEEEEEBTTSSHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHH-HHHHh
Confidence            378999999999999 55554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.96  E-value=0.045  Score=45.38  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=17.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALH  162 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~  162 (440)
                      ++.--++|+|++|+|||||..+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~   32 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHM   32 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHH
Confidence            4444578999999999999433

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.049  Score=47.69  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++++.|-|+.||||||+ ++.+...
T Consensus         1 ~~k~I~ieG~dGsGKST~-~~~L~~~   25 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTF-VNILKQL   25 (241)
T ss_dssp             CCEEEEEECSTTSSHHHH-HTTTGGG
T ss_pred             CCCEEEEECCCCCCHHHH-HHHHHHH
Confidence            467999999999999999 4444443

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.81  E-value=0.052  Score=46.20  Aligned_cols=22  Identities=41%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 013567          143 GRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      .-+++|.|+.||||||+ ++.+.
T Consensus         9 p~~I~ieG~~GsGKTTl-~~~L~   30 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTY-LNHFE   30 (197)
T ss_dssp             CEEEEEECSTTSCHHHH-HHTTG
T ss_pred             ceEEEEECCCCCCHHHH-HHHHH
Confidence            34899999999999999 44443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.50  E-value=0.069  Score=44.13  Aligned_cols=20  Identities=15%  Similarity=0.302  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.++|++|+|||||..+++.
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999666654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.20  E-value=0.055  Score=45.60  Aligned_cols=17  Identities=47%  Similarity=0.602  Sum_probs=14.7

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHA  163 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~l  163 (440)
                      ++|+|+|++||||| ++.
T Consensus         4 VaiiG~~nvGKSSL-in~   20 (185)
T d1lnza2           4 VGLVGFPSVGKSTL-LSV   20 (185)
T ss_dssp             EEEESSTTSSHHHH-HHH
T ss_pred             EEEECCCCCCHHHH-HHH
Confidence            68999999999999 443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.96  E-value=0.088  Score=45.16  Aligned_cols=21  Identities=38%  Similarity=0.419  Sum_probs=16.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li  164 (440)
                      +-++|+|++++|||||..+++
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~   21 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLL   21 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999944443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=89.95  E-value=0.077  Score=43.68  Aligned_cols=17  Identities=29%  Similarity=0.538  Sum_probs=14.6

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALH  162 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~  162 (440)
                      ++|+|++|+|||||..+
T Consensus         5 i~ivG~~~~GKTsLi~~   21 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKK   21 (165)
T ss_dssp             EEEECSTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            67999999999999443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.088  Score=43.90  Aligned_cols=20  Identities=30%  Similarity=0.368  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|++|+|||+|..+++.
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            67899999999999665553

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=0.088  Score=43.75  Aligned_cols=20  Identities=35%  Similarity=0.478  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|++|+|||||..+++.
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            67999999999999665554

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.08  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|+|++|+|||+|..+++.+
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999996666543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.54  E-value=0.13  Score=49.49  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      -++|+|+||+||||| ++.+.+
T Consensus        58 ~Iai~G~~n~GKSSL-iNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSF-INTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHH-HHHHHT
T ss_pred             EEEEECCCCCCHHHH-HHHHhC
Confidence            489999999999999 777765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.44  E-value=0.093  Score=43.54  Aligned_cols=19  Identities=37%  Similarity=0.573  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      .++|+|++|+||||| ++-+
T Consensus         2 ~V~liG~~n~GKSsL-i~~L   20 (171)
T d1mkya1           2 TVLIVGRPNVGKSTL-FNKL   20 (171)
T ss_dssp             EEEEECCTTSSHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHH-HHHH
Confidence            478999999999999 4434

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=89.36  E-value=0.096  Score=43.18  Aligned_cols=19  Identities=32%  Similarity=0.373  Sum_probs=15.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li  164 (440)
                      +.|.|++|+|||||..++.
T Consensus         5 i~i~G~~~~GKTsLl~~l~   23 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIA   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999955554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.35  E-value=0.09  Score=43.63  Aligned_cols=20  Identities=35%  Similarity=0.625  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      +++|+|.+++||||| ++.+.
T Consensus         7 ~I~iiG~~nvGKSSL-in~L~   26 (179)
T d1egaa1           7 FIAIVGRPNVGKSTL-LNKLL   26 (179)
T ss_dssp             EEEEECSSSSSHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHH-HHHHh
Confidence            588999999999999 55443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.17  E-value=0.096  Score=43.81  Aligned_cols=19  Identities=42%  Similarity=0.691  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      +++|+|.+|+||||| ++.+
T Consensus         7 ~I~lvG~~~~GKSSL-in~l   25 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTL-LNNL   25 (178)
T ss_dssp             EEEEECSTTSSHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHH-HHHH
Confidence            799999999999999 4444

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.06  E-value=0.1  Score=43.93  Aligned_cols=19  Identities=26%  Similarity=0.337  Sum_probs=15.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li  164 (440)
                      +.|+|++|+|||||..+++
T Consensus         8 i~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            6799999999999955544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.11  Score=42.99  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|+|++|+|||+|..+++.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999996666543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.97  E-value=0.2  Score=45.56  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      .|=.+|.|+.++-..+.|+||+++|||+| +.++..+.
T Consensus        92 ~l~~~L~~~~~k~n~~~l~G~~~tGKS~f-~~~i~~~l  128 (267)
T d1u0ja_          92 VFLGWATKKFGKRNTIWLFGPATTGKTNI-AEAIAHTV  128 (267)
T ss_dssp             HHHHHHTTCSTTCCEEEEECSTTSSHHHH-HHHHHHHS
T ss_pred             HHHHHHcCCCCccEEEEEEcCCCCCHHHH-HHHHHHHh
Confidence            34445668999999999999999999999 56666665

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.95  E-value=0.072  Score=44.67  Aligned_cols=18  Identities=39%  Similarity=0.656  Sum_probs=15.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li  164 (440)
                      ++|+|+|++||||| ++.+
T Consensus         4 VaivG~~nvGKSTL-in~L   21 (180)
T d1udxa2           4 VGLVGYPNAGKSSL-LAAM   21 (180)
T ss_dssp             EEEECCGGGCHHHH-HHHH
T ss_pred             EEEECCCCCCHHHH-HHHH
Confidence            78999999999999 5444

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.097  Score=43.70  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|++|+|||||..+++.
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999655544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.097  Score=43.61  Aligned_cols=20  Identities=25%  Similarity=0.421  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|++|+|||||..+++.
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999666654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.73  E-value=0.15  Score=40.55  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..+...|.+|.|+|||+++..++   ...+..++++...
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~P~   42 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNPS   42 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEESC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEcCh
Confidence            45778999999999999854443   3556777777644

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.11  Score=42.94  Aligned_cols=20  Identities=25%  Similarity=0.529  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|++|+|||+|..+++.
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68899999999999656554

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.11  Score=42.88  Aligned_cols=20  Identities=35%  Similarity=0.682  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|.+|+|||||..+++.
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67899999999999655553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=88.59  E-value=0.46  Score=40.82  Aligned_cols=21  Identities=33%  Similarity=0.314  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      -++|.|...+|||||+=+++.
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            378999999999999555543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=0.12  Score=42.78  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|.+|+|||+|..+++.
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999666654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.49  E-value=0.12  Score=42.85  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.++|++|+|||||..+++.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999555543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.12  Score=42.81  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|++|+|||+|..+++.
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67899999999999776664

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.30  E-value=0.11  Score=43.51  Aligned_cols=20  Identities=45%  Similarity=0.612  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      -++|+|++|+||||| ++.+.
T Consensus        10 kV~iiG~~~~GKSTL-in~l~   29 (186)
T d1mkya2          10 KVAIVGRPNVGKSTL-FNAIL   29 (186)
T ss_dssp             EEEEECSTTSSHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHH-HHHHH
Confidence            478999999999999 54443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.15  E-value=0.11  Score=42.55  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.+.|++|+|||||..+++.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999996666543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.13  Score=42.57  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|+|.+|+|||+|..+++.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999997666543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.11  Score=43.35  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|.+|+|||+|..+++.
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999666554

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.12  Score=42.85  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|++|+|||+|..+++.
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999666654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.96  E-value=0.12  Score=42.78  Aligned_cols=21  Identities=19%  Similarity=0.540  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++|+|++|+|||+|..+++.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578999999999996666644

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.91  E-value=0.16  Score=44.60  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD  178 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id  178 (440)
                      .+++|+|+.||||||+| +++..    ..|..+++
T Consensus         2 ~iIgiTG~igSGKsTva-~~l~e----~~g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTA-DFIMS----NYSAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHH----HSCEEECC
T ss_pred             EEEEEECCCCCCHHHHH-HHHHH----hCCCeEEc
Confidence            37999999999999994 44322    23556665

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.82  E-value=0.12  Score=43.40  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|.+|+|||||..+++.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999555543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.13  Score=42.32  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~  165 (440)
                      -+.|+|++|+|||+|..+++.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478899999999999655554

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.74  E-value=0.13  Score=42.65  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++++|.+|+|||||..+++.
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999655543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.13  Score=43.01  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|+|++|+|||+|..+++.+
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578899999999996666543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.35  E-value=0.14  Score=43.51  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|++|+|||||..+++.
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999665653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=87.32  E-value=0.079  Score=43.94  Aligned_cols=19  Identities=26%  Similarity=0.483  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -++|+|+|++||||| ++.+
T Consensus        18 ~I~lvG~~NvGKSSL-~n~L   36 (188)
T d1puia_          18 EVAFAGRSNAGKSSA-LNTL   36 (188)
T ss_dssp             EEEEEECTTSSHHHH-HTTT
T ss_pred             EEEEECCCCCCHHHH-HHHH
Confidence            489999999999999 4433

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=0.15  Score=42.26  Aligned_cols=20  Identities=25%  Similarity=0.356  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|++|+|||||..+++.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999555553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.21  E-value=0.16  Score=41.77  Aligned_cols=20  Identities=20%  Similarity=0.441  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.++|++|+|||||..+++.
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999555543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=0.16  Score=41.98  Aligned_cols=19  Identities=32%  Similarity=0.322  Sum_probs=15.6

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li  164 (440)
                      +.|+|++|+|||+|..++.
T Consensus         4 i~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            6789999999999955443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.01  E-value=0.32  Score=40.99  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=25.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCC
Q 013567          146 VEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAE  180 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E  180 (440)
                      +.|.+|.|+|||..++.++.... +.+..++|+...
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~   61 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT   61 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCc
Confidence            56889999999987776655443 456678888654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=86.90  E-value=0.2  Score=41.36  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=16.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~l  163 (440)
                      --+.|+|++|+|||||.-++
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQL   36 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35789999999999994333

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.88  E-value=0.17  Score=41.70  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|.+|+|||||..+++.
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999666554

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.15  Score=42.04  Aligned_cols=21  Identities=19%  Similarity=0.476  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++|+|.+|+|||+|..+++.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999996666543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.72  E-value=0.065  Score=43.77  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++|+|+|++||||| ++.+.+
T Consensus         3 I~liG~~n~GKSSL-in~l~g   22 (160)
T d1xzpa2           3 MVIVGKPNVGKSTL-LNRLLN   22 (160)
T ss_dssp             EEEECCHHHHTCHH-HHHHHH
T ss_pred             EEEECCCCCCHHHH-HHHHhC
Confidence            68999999999999 554543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.17  Score=41.49  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|+|.+|+|||+|..+++.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999655553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.45  E-value=0.17  Score=49.35  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      +-++++||+|+|||.||-.++ ..+  +-+-+..|+.
T Consensus        50 sNILliGPTGvGKTlLAr~LA-k~l--~VPFv~~daT   83 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLA-KLA--NAPFIKVEAT   83 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH-HHT--TCCEEEEEGG
T ss_pred             ccEEEECCCCCCHHHHHHHHH-HHh--CCCEEEeecc
Confidence            478999999999999965444 444  4455555543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=86.38  E-value=0.19  Score=40.82  Aligned_cols=19  Identities=42%  Similarity=0.623  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li  164 (440)
                      -++|+|++++||||| ++.+
T Consensus         3 kI~lvG~~nvGKSsL-in~l   21 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSL-LNAL   21 (161)
T ss_dssp             EEEEEESTTSSHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHH-HHHH
Confidence            478999999999999 4444

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=86.31  E-value=1.3  Score=37.11  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=15.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      ++|.|...+||||| +..+.
T Consensus         8 IaiiGhvd~GKSTL-~~~L~   26 (195)
T d1kk1a3           8 IGMVGHVDHGKTTL-TKALT   26 (195)
T ss_dssp             EEEECSTTSSHHHH-HHHHH
T ss_pred             EEEEeccCCcHHHH-HHHHH
Confidence            68999999999999 55554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.12  E-value=0.2  Score=41.56  Aligned_cols=20  Identities=20%  Similarity=0.444  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.++|++|+|||+|..+++.
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            56889999999999666664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=86.11  E-value=0.12  Score=48.12  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      -+.|.|+||+||||| .+.+..++
T Consensus        30 ~vLl~G~pG~GKT~l-ar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTA-VRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHH-HHHHHHHS
T ss_pred             eEEEECCCCccHHHH-HHHHHHhC
Confidence            479999999999999 55555655

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.77  E-value=0.17  Score=42.44  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++|.|.+|+|||+|..+++.+
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999997767654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=85.59  E-value=0.12  Score=42.88  Aligned_cols=19  Identities=26%  Similarity=0.482  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~l  163 (440)
                      -+.|+|++|+|||||..++
T Consensus        14 kIvlvG~~~vGKTSli~rl   32 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKL   32 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3679999999999995443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.52  E-value=0.69  Score=43.30  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      -++|.|..++|||||+=.++..
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~   40 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQR   40 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999996655543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.18  Score=42.63  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++|+|++|+|||+|..+++.+
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999997666654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=85.35  E-value=0.14  Score=42.74  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=18.6

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHH
Q 013567          139 GLPKGRIVEIFGPESSGKTTLALH  162 (440)
Q Consensus       139 Gi~~G~ii~I~G~~GsGKTTLaL~  162 (440)
                      |-.+---+.|+|++|+|||||..+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~   36 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYR   36 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHH
T ss_pred             CCCceEEEEEECCCCCCHHHHHHH
Confidence            455555678999999999999433

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.12  E-value=0.22  Score=41.86  Aligned_cols=18  Identities=28%  Similarity=0.493  Sum_probs=16.0

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHA  163 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~l  163 (440)
                      +.|.|.+|+|||||..++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            679999999999997666

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.98  E-value=0.19  Score=45.13  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~  166 (440)
                      -+.|+|++|+||||| ++.+.+
T Consensus        34 ~I~LvG~tg~GKSSl-iN~ilg   54 (257)
T d1h65a_          34 TILVMGKGGVGKSST-VNSIIG   54 (257)
T ss_dssp             EEEEEESTTSSHHHH-HHHHHT
T ss_pred             EEEEECCCCCcHHHH-HHHHhC
Confidence            478999999999999 565543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.94  E-value=0.24  Score=41.10  Aligned_cols=19  Identities=37%  Similarity=0.429  Sum_probs=15.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li  164 (440)
                      +.|.|.+|+|||+|..++.
T Consensus         6 v~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6799999999999954443

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.92  E-value=0.23  Score=43.34  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=18.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567          144 RIVEIFGPESSGKTTLALHAIAEV  167 (440)
Q Consensus       144 ~ii~I~G~~GsGKTTLaL~li~~~  167 (440)
                      +++.|-|.-||||||+ ++.+...
T Consensus         3 k~IviEG~~GsGKST~-~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTF-VKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHH-HHHHHHH
T ss_pred             eEEEEECCCCCcHHHH-HHHHHHH
Confidence            4889999999999999 4555443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=0.21  Score=42.08  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|+|.+|+|||+|..+++.+
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999996665543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.61  E-value=0.22  Score=41.71  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.+.|++|+|||+|..+++.+
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999996666543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.56  E-value=0.13  Score=42.82  Aligned_cols=20  Identities=25%  Similarity=0.464  Sum_probs=15.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|++|+|||+|..+++.
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999554443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.52  E-value=0.23  Score=41.34  Aligned_cols=19  Identities=32%  Similarity=0.497  Sum_probs=15.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAI  164 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li  164 (440)
                      +.++|.+|+|||+|.-+++
T Consensus        10 i~vvG~~~vGKTsli~~l~   28 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFT   28 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6799999999999944444

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=0.24  Score=41.40  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=19.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLaL~li~  165 (440)
                      |+.=-+.|+|.+|+|||+|..+++.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh
Confidence            3333578999999999999666654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.87  E-value=0.17  Score=41.98  Aligned_cols=20  Identities=20%  Similarity=0.322  Sum_probs=8.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIA  165 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~  165 (440)
                      +.|+|.+|+|||||.-+++.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999544543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.63  E-value=0.4  Score=41.64  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQ  168 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~  168 (440)
                      -++|.|.+|+|||||..++..+-.
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~   31 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHV   31 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCc
Confidence            368999999999999777755443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.03  E-value=0.54  Score=44.46  Aligned_cols=40  Identities=28%  Similarity=0.314  Sum_probs=28.0

Q ss_pred             CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567          138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH  181 (440)
Q Consensus       138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~  181 (440)
                      ...|++. +.++||+|+|||-||-+++.. .  +.+.+.+|+..
T Consensus        64 ~~~p~~n-iLfiGPTGvGKTElAk~LA~~-~--~~~~ir~D~s~  103 (364)
T d1um8a_          64 VELSKSN-ILLIGPTGSGKTLMAQTLAKH-L--DIPIAISDATS  103 (364)
T ss_dssp             TTCCCCC-EEEECCTTSSHHHHHHHHHHH-T--TCCEEEEEGGG
T ss_pred             ccCCCcc-eeeeCCCCccHHHHHHHHHhh-c--ccceeehhhhh
Confidence            4778886 667799999999997665543 2  44556666543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.03  E-value=3.8  Score=34.43  Aligned_cols=19  Identities=32%  Similarity=0.392  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 013567          145 IVEIFGPESSGKTTLALHA  163 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~l  163 (440)
                      -++|+|...+|||||+-++
T Consensus        10 ni~iiGhVd~GKSTL~~~L   28 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAI   28 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEEccCCcHHHHHHHH
Confidence            4899999999999994444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.84  E-value=0.4  Score=39.86  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      +.|.|..|+|||+|..++..+
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999997766544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=81.36  E-value=0.57  Score=43.79  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567          145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV  177 (440)
Q Consensus       145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i  177 (440)
                      .|.|-|+-|+||||+ ++.+.........++++
T Consensus         8 rI~iEG~iGsGKSTl-~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTT-GRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHH-HHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHH-HHHHHHHhccCCCeEEE
Confidence            478899999999999 56666666656667666

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.32  E-value=0.46  Score=39.29  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 013567          146 VEIFGPESSGKTTLALHAIAE  166 (440)
Q Consensus       146 i~I~G~~GsGKTTLaL~li~~  166 (440)
                      ++|.|..|+|||+|..++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            689999999999997766543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.03  E-value=1  Score=38.46  Aligned_cols=43  Identities=30%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567          130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE  180 (440)
Q Consensus       130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E  180 (440)
                      ..++.++.+     .-..|.+|+|+|||..++.++...   +.+++++...
T Consensus        77 eav~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~---~~~~Liv~p~  119 (206)
T d2fz4a1          77 KALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPT  119 (206)
T ss_dssp             HHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESS
T ss_pred             HHHHHHHhC-----CCcEEEeCCCCCceehHHhHHHHh---cCceeEEEcc
Confidence            456666532     345688899999999877666443   5678887643

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=81.00  E-value=0.4  Score=44.38  Aligned_cols=20  Identities=45%  Similarity=0.743  Sum_probs=18.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHH
Q 013567          141 PKGRIVEIFGPESSGKTTLA  160 (440)
Q Consensus       141 ~~G~ii~I~G~~GsGKTTLa  160 (440)
                      ..|++.+++|-+|+|||||.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999994

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.23  E-value=0.82  Score=40.54  Aligned_cols=83  Identities=14%  Similarity=0.149  Sum_probs=41.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567          143 GRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSG  220 (440)
Q Consensus       143 G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~  220 (440)
                      ..-+.|.|++|+|||++| +.+.... ......+.++........ ...-+|..-..+. ........+++.       .
T Consensus        23 ~~pvlI~Ge~GtGK~~~A-~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~~~-~~~~~~~g~l~~-------a   93 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVA-RLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFT-GAVSSKEGFFEL-------A   93 (247)
T ss_dssp             CSCEEEECSTTSSHHHHH-HHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSST-TCCSCBCCHHHH-------T
T ss_pred             CCCEEEECCCCcCHHHHH-HHHHHhcCCcccccccchhhhhhhcccHHHhcCcccCCcC-CcccccCCHHHc-------c
Confidence            334789999999999995 4444433 233455556554333222 2333443221111 001111112221       2


Q ss_pred             CcceEEEecccccC
Q 013567          221 AIDLICVDSVSALT  234 (440)
Q Consensus       221 ~~~lvVIDsl~~l~  234 (440)
                      .-..+++|.+..+.
T Consensus        94 ~gGtL~l~~i~~L~  107 (247)
T d1ny5a2          94 DGGTLFLDEIGELS  107 (247)
T ss_dssp             TTSEEEEESGGGCC
T ss_pred             CCCEEEEeChHhCC
Confidence            23478899998775

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.01  E-value=0.41  Score=44.47  Aligned_cols=20  Identities=40%  Similarity=0.697  Sum_probs=17.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHH
Q 013567          142 KGRIVEIFGPESSGKTTLAL  161 (440)
Q Consensus       142 ~G~ii~I~G~~GsGKTTLaL  161 (440)
                      .|++.+++|.+|+|||||..
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            57899999999999999943