Citrus Sinensis ID: 014155

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGMV
ccccccHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEEEccccccccccccccEEEcccccEEEEEEccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHcccEEEEEccccEEEEEccccccccccccccccEEEccccHHHHHHHHHHHHHccccEEEEEEcccHHcccccHHHHHHHHHcccEEEEccccccccEEEEccccccccEEEEcccccHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHcccEEEEccccccEEEccccEEEccccEEEcccccHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHcccEEEEEccEEEEEccccccccccccccEEEcccccccHHHHHHHHHHHccccEEEEcccc
cccHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEcccccccEEEEEEEccccccccccEEEccccEEcEEEEccEcHHHHHHHHHHHHHcEcEEEEEcccccHHHHHHHHHHHHcccEEEEccccccEEEEcccccccccccccccEEEEccccHHHHHHHHHHccccEEEEcEEEEccHHHHHcccHHHHHHHHHccccEEEccccccccEEEccccccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHHcccccEEcccccEEEEccccccEcccEEEccEcHHHHHHHHHHHHHHccEEEEEccccccccHHHHHHHHHHHHccEEEEcccEEEEEccccccccccccEccEEEcccccccHHHHHHHHHHcEccEEEEcccc
MAQVSKICngiqntrvftnqtklqkpksvsaisfrsqsrgcssswglryndrlgnnntvRTVRasasvgtaekqskASEIVLQPireisgtvtlpgskslSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEgcgglfplakqqtgEIELFLgnagtamrpLTAAVTAAggnlsyildgvprmrerpigDLVTGLKQlgadvdcilgtncppvringkgglpggkvklsGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGvfvehsdswdrFFIQggqkykspgnafvegdassasYFVAGAavtggtvtvegcgtsslqgDVKFAEVLEKMGAkvtwtensvtvtgpprdpygrkhlrAVDVNMNKMPDVAMTLAVVALFadgptairdgmv
maqvskicngiqntrvftnqtklqkpksvsaisfrsqsrgcssswglryndrlgnnNTVRTVRAsasvgtaekqskaseivlqpireisgtvtlpgsksLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMgakvtwtensvtvtgpprdpygrKHLRAVDVNMNKMPDVAMTLAVVALFADgptairdgmv
MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAIsfrsqsrgcsssWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINgkgglpggkvklsgklssQYltallmaaplalGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFvagaavtggtvtvEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGMV
*******CNGIQNTRVF***************************WGLRYNDR***************************IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTG*****YGRKHLRAVDVNMNKMPDVAMTLAVVALFADG*********
*******CNGIQNTRVFTNQTK********************************************************EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGMV
MAQVSKICNGIQNTRVFTNQT*********************SSWGLRYNDRLGNNNTVRTVR*************ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGMV
************NTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGMV
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query429 2.2.26 [Sep-21-2011]
P05466520 3-phosphoshikimate 1-carb yes no 0.986 0.813 0.760 0.0
P17688516 3-phosphoshikimate 1-carb N/A no 0.981 0.815 0.771 0.0
P11043516 3-phosphoshikimate 1-carb N/A no 0.986 0.819 0.765 1e-176
P10748520 3-phosphoshikimate 1-carb N/A no 0.986 0.813 0.751 1e-171
P23981518 3-phosphoshikimate 1-carb N/A no 0.981 0.812 0.739 1e-168
P23281338 3-phosphoshikimate 1-carb N/A no 0.571 0.724 0.865 1e-114
A1STZ0428 3-phosphoshikimate 1-carb yes no 0.778 0.780 0.517 1e-92
A7MES7428 3-phosphoshikimate 1-carb yes no 0.769 0.771 0.533 1e-92
A6Q7Q0427 3-phosphoshikimate 1-carb yes no 0.769 0.772 0.525 1e-92
Q7N6D5428 3-phosphoshikimate 1-carb yes no 0.769 0.771 0.530 5e-92
>sp|P05466|AROA_ARATH 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3 Back     alignment and function desciption
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/430 (76%), Positives = 372/430 (86%), Gaps = 7/430 (1%)

Query: 1   MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRG----CSSSWGLRYNDRLGNN 56
           MAQVS+ICNG+QN  + +N +K  + KS  ++S ++Q        SSSWGL+ +      
Sbjct: 1   MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60

Query: 57  NTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTV 116
           + +R ++  +SV TAEK   ASEIVLQPIREISG + LPGSKSLSNRILLLAALSEGTTV
Sbjct: 61  SELRPLKVMSSVSTAEK---ASEIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTV 117

Query: 117 VDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAG 176
           VDNLL+S+DI++MLDALK+LGLNVE D    RA+VEGCGG+FP +     +IEL+LGNAG
Sbjct: 118 VDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELYLGNAG 177

Query: 177 TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236
           TAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N
Sbjct: 178 TAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCPPVRVN 237

Query: 237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFG 296
             GGLPGGKVKLSG +SSQYLTALLM+APLALG+VEIEI+DKLISVPYVEMTLKLMERFG
Sbjct: 238 ANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFG 297

Query: 297 VFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ 356
           V VEHSDSWDRFF++GGQKYKSPGNA+VEGDASSASYF+AGAA+TG TVTVEGCGT+SLQ
Sbjct: 298 VSVEHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQ 357

Query: 357 GDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVAL 416
           GDVKFAEVLEKMG KV+WTENSVTVTGPPRD +G +HLRA+DVNMNKMPDVAMTLAVVAL
Sbjct: 358 GDVKFAEVLEKMGCKVSWTENSVTVTGPPRDAFGMRHLRAIDVNMNKMPDVAMTLAVVAL 417

Query: 417 FADGPTAIRD 426
           FADGPT IRD
Sbjct: 418 FADGPTTIRD 427

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 9
>sp|P17688|AROA_BRANA 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1 Back     alignment and function description
>sp|P11043|AROA_PETHY 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1 Back     alignment and function description
>sp|P10748|AROA_SOLLC 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P23981|AROA1_TOBAC 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1 Back     alignment and function description
>sp|P23281|AROA2_TOBAC 3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) OS=Nicotiana tabacum GN=EPSPS-2 PE=2 SV=1 Back     alignment and function description
>sp|A1STZ0|AROA_PSYIN 3-phosphoshikimate 1-carboxyvinyltransferase OS=Psychromonas ingrahamii (strain 37) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|A7MES7|AROA_CROS8 3-phosphoshikimate 1-carboxyvinyltransferase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|A6Q7Q0|AROA_SULNB 3-phosphoshikimate 1-carboxyvinyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|Q7N6D5|AROA_PHOLL 3-phosphoshikimate 1-carboxyvinyltransferase OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=aroA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
76782198520 putative 5-enolpyruvylshikimate 3-phosph 0.993 0.819 0.798 0.0
15225450520 3-phosphoshikimate 1-carboxyvinyltransfe 0.986 0.813 0.760 0.0
295790520 EPSP [Arabidopsis thaliana] 0.986 0.813 0.758 0.0
157142998521 5-enolpyruvylshikimate-3-phosphate synth 0.986 0.811 0.802 0.0
164564335521 5-enolpyruvylshikimate-3-phosphate synth 0.986 0.811 0.800 0.0
18251236518 5-enolpyruvylshikimate-3-phosphate synth 0.986 0.816 0.773 0.0
257228991518 5-enolpyruvylshikimate-3-phosphate synth 0.990 0.820 0.751 0.0
257228989518 5-enolpyruvylshikimate-3-phosphate synth 0.990 0.820 0.751 0.0
55740769519 5-enolpyruvylshikimate 3-phosphate synth 0.983 0.813 0.790 0.0
257792900518 5-enolpyruvylshikimate-3-phosphate synth 0.990 0.820 0.746 0.0
>gi|76782198|gb|ABA54869.1| putative 5-enolpyruvylshikimate 3-phosphate synthase [Fagus sylvatica] Back     alignment and taxonomy information
 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/427 (79%), Positives = 375/427 (87%), Gaps = 1/427 (0%)

Query: 1   MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLG-NNNTV 59
           MAQVSKIC+G Q+T++F N  K QKPKS+  ISF SQ  G S+SW L+        +  V
Sbjct: 1   MAQVSKICSGAQSTQIFHNNPKPQKPKSIGFISFGSQLLGSSTSWTLKNKHVCAVGSAKV 60

Query: 60  RTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN 119
            T R SASV TAEK S   EIVLQPI++ISGT+ LPGSKSLSNRILLLAALSEGTTVVDN
Sbjct: 61  GTFRVSASVATAEKPSTVPEIVLQPIKDISGTIKLPGSKSLSNRILLLAALSEGTTVVDN 120

Query: 120 LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAM 179
           LL+S+DIH+ML ALK LGL VEED A+KRAIVEGCGGLFP+ K+   EI+LFLGNAGTAM
Sbjct: 121 LLNSDDIHYMLGALKTLGLRVEEDKAIKRAIVEGCGGLFPVGKESRDEIQLFLGNAGTAM 180

Query: 180 RPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKG 239
           RPLTAAVT AGGN SY+LDGVPRMRERPIGDLV GL+QLGA+VDC LGT CPPVR+ GKG
Sbjct: 181 RPLTAAVTVAGGNSSYVLDGVPRMRERPIGDLVDGLQQLGANVDCFLGTKCPPVRVFGKG 240

Query: 240 GLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFV 299
           GLPGGKVKLSG +SSQYLTAL+MAAPLALG+VEIEIIDKLISVPYVEMTLKLMERFG+ V
Sbjct: 241 GLPGGKVKLSGSISSQYLTALVMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGISV 300

Query: 300 EHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDV 359
           EH+DSWDRF I+GGQKYKSPGNA+VEGDASSASYF+AGAAVTGGTVTVEGCGTSSLQGDV
Sbjct: 301 EHNDSWDRFLIRGGQKYKSPGNAYVEGDASSASYFLAGAAVTGGTVTVEGCGTSSLQGDV 360

Query: 360 KFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD 419
           KFAEVLEKMGAKVTW+E SVTVTGPP+D   +KHLRA+DVNMNKMPDVAMTLAVVALFAD
Sbjct: 361 KFAEVLEKMGAKVTWSETSVTVTGPPQDSSKKKHLRAIDVNMNKMPDVAMTLAVVALFAD 420

Query: 420 GPTAIRD 426
           GPTAIRD
Sbjct: 421 GPTAIRD 427

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15225450|ref|NP_182055.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] gi|166898083|sp|P05466.3|AROA_ARATH RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor gi|2583124|gb|AAB82633.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|63003818|gb|AAY25438.1| At2g45300 [Arabidopsis thaliana] gi|110742505|dbj|BAE99170.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|330255442|gb|AEC10536.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|295790|emb|CAA29828.1| EPSP [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|157142998|gb|ABV24481.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|164564335|gb|ABY61050.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] gi|193230774|gb|ACF16410.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|18251236|gb|AAL65913.1|AF440389_1 5-enolpyruvylshikimate-3-phosphate synthase [Orychophragmus violaceus] Back     alignment and taxonomy information
>gi|257228991|gb|ACV53022.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus palmeri] Back     alignment and taxonomy information
>gi|257228989|gb|ACV53021.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus palmeri] Back     alignment and taxonomy information
>gi|55740769|gb|AAV64030.1| 5-enolpyruvylshikimate 3-phosphate synthase [Camptotheca acuminata] Back     alignment and taxonomy information
>gi|257792900|gb|ACV67278.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus tuberculatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
TAIR|locus:2050812520 AT2G45300 [Arabidopsis thalian 0.986 0.813 0.667 3.9e-147
TAIR|locus:2028544521 AT1G48860 [Arabidopsis thalian 0.883 0.727 0.712 8.9e-141
UNIPROTKB|Q9KRB0426 aroA "3-phosphoshikimate 1-car 0.771 0.776 0.461 2.4e-69
TIGR_CMR|VC_1732426 VC_1732 "3-phosphoshikimate 1- 0.771 0.776 0.461 2.4e-69
TIGR_CMR|CPS_2333426 CPS_2333 "3-phosphoshikimate 1 0.773 0.779 0.442 2.8e-66
TIGR_CMR|SO_2404426 SO_2404 "3-phosphoshikimate 1- 0.766 0.772 0.441 7.4e-66
UNIPROTKB|P0A6D3427 aroA "3-phosphoshikimate-1-car 0.769 0.772 0.432 2e-65
CGD|CAL0004346 1551 ARO1 [Candida albicans (taxid: 0.771 0.213 0.363 2.1e-41
ASPGD|ASPL0000055969 1583 aromA [Emericella nidulans (ta 0.804 0.217 0.352 4.7e-39
SGD|S000002534 1588 ARO1 "Pentafunctional arom pro 0.764 0.206 0.356 2.1e-38
TAIR|locus:2050812 AT2G45300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
 Identities = 287/430 (66%), Positives = 326/430 (75%)

Query:     1 MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAIXXXXX----XXXXXXXWGLRYNDRLGNN 56
             MAQVS+ICNG+QN  + +N +K  + KS  ++                WGL+ +      
Sbjct:     1 MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60

Query:    57 NTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTV 116
             + +R ++  +SV TAEK   ASEIVLQPIREISG + LPGSKSLSNRILLLAALSEGTTV
Sbjct:    61 SELRPLKVMSSVSTAEK---ASEIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTV 117

Query:   117 VDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAG 176
             VDNLL+S+DI++MLDALK+LGLNVE D    RA+VEGCGG+FP +     +IEL+LGNAG
Sbjct:   118 VDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELYLGNAG 177

Query:   177 TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236
             TAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N
Sbjct:   178 TAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCPPVRVN 237

Query:   237 XXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFG 296
                               QY            G+VEIEI+DKLISVPYVEMTLKLMERFG
Sbjct:   238 ANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFG 297

Query:   297 VFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQ 356
             V VEHSDSWDRFF++GGQKYKSPGNA+VEGDASSASYF             EGCGT+SLQ
Sbjct:   298 VSVEHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQ 357

Query:   357 GDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVAL 416
             GDVKFAEVLEKMG KV+WTENSVTVTGPPRD +G +HLRA+DVNMNKMPDVAMTLAVVAL
Sbjct:   358 GDVKFAEVLEKMGCKVSWTENSVTVTGPPRDAFGMRHLRAIDVNMNKMPDVAMTLAVVAL 417

Query:   417 FADGPTAIRD 426
             FADGPT IRD
Sbjct:   418 FADGPTTIRD 427
GO:0003824 "catalytic activity" evidence=IEA
GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA;TAS
GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=TAS
GO:0009423 "chorismate biosynthetic process" evidence=IMP
GO:0018920 "glyphosate metabolic process" evidence=IMP
TAIR|locus:2028544 AT1G48860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB0 aroA "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1732 VC_1732 "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2333 CPS_2333 "3-phosphoshikimate 1-carboxyvinyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2404 SO_2404 "3-phosphoshikimate 1-carboxyvinyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6D3 aroA "3-phosphoshikimate-1-carboxyvinyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7N6D5AROA_PHOLL2, ., 5, ., 1, ., 1, 90.53020.76920.7710yesno
P05466AROA_ARATH2, ., 5, ., 1, ., 1, 90.76040.98600.8134yesno
B8CMH2AROA_SHEPW2, ., 5, ., 1, ., 1, 90.51280.77620.7816yesno
A9L2X7AROA_SHEB92, ., 5, ., 1, ., 1, 90.50860.77380.7793yesno
A3QEC0AROA_SHELP2, ., 5, ., 1, ., 1, 90.51720.77380.7793yesno
B7VM38AROA_VIBSL2, ., 5, ., 1, ., 1, 90.51290.77150.7769yesno
P24497AROA_KLEPN2, ., 5, ., 1, ., 1, 90.52440.76920.7728yesno
Q66CI8AROA_YERPS2, ., 5, ., 1, ., 1, 90.52440.76920.7710yesno
A7FJW9AROA_YERP32, ., 5, ., 1, ., 1, 90.52440.76920.7710yesno
A5F7G5AROA_VIBC32, ., 5, ., 1, ., 1, 90.52730.77150.7769yesno
B1JRD9AROA_YERPY2, ., 5, ., 1, ., 1, 90.52440.76920.7710yesno
A8FVN6AROA_SHESH2, ., 5, ., 1, ., 1, 90.51860.77150.7769yesno
B0TT43AROA_SHEHH2, ., 5, ., 1, ., 1, 90.50420.77620.7816yesno
Q9KRB0AROA_VIBCH2, ., 5, ., 1, ., 1, 90.53020.77150.7769yesno
A3D4A6AROA_SHEB52, ., 5, ., 1, ., 1, 90.51430.77380.7793yesno
A1RJF8AROA_SHESW2, ., 5, ., 1, ., 1, 90.51140.77380.7793yesno
P10748AROA_SOLLC2, ., 5, ., 1, ., 1, 90.75110.98600.8134N/Ano
A8GCH1AROA_SERP52, ., 5, ., 1, ., 1, 90.52160.76920.7710yesno
A6T701AROA_KLEP72, ., 5, ., 1, ., 1, 90.52160.76920.7728yesno
Q60112AROA_YERPE2, ., 5, ., 1, ., 1, 90.52160.76920.7710yesno
A4TN18AROA_YERPP2, ., 5, ., 1, ., 1, 90.52160.76920.7710yesno
Q1CA73AROA_YERPA2, ., 5, ., 1, ., 1, 90.52160.76920.7710yesno
B2KA23AROA_YERPB2, ., 5, ., 1, ., 1, 90.52440.76920.7710yesno
A6WNN0AROA_SHEB82, ., 5, ., 1, ., 1, 90.51430.77380.7793yesno
B2VC79AROA_ERWT92, ., 5, ., 1, ., 1, 90.53020.76920.7710yesno
B8EA95AROA_SHEB22, ., 5, ., 1, ., 1, 90.51140.77380.7793yesno
C3LN54AROA_VIBCM2, ., 5, ., 1, ., 1, 90.53020.77150.7769yesno
A1STZ0AROA_PSYIN2, ., 5, ., 1, ., 1, 90.51720.77850.7803yesno
A4Y732AROA_SHEPC2, ., 5, ., 1, ., 1, 90.51430.77380.7793yesno
Q87QX9AROA_VIBPA2, ., 5, ., 1, ., 1, 90.51000.77150.7769yesno
Q1CGG5AROA_YERPN2, ., 5, ., 1, ., 1, 90.52160.76920.7710yesno
A7MES7AROA_CROS82, ., 5, ., 1, ., 1, 90.53310.76920.7710yesno
A6Q7Q0AROA_SULNB2, ., 5, ., 1, ., 1, 90.52580.76920.7728yesno
Q0HIX1AROA_SHESM2, ., 5, ., 1, ., 1, 90.51710.76920.7746yesno
A8H4A4AROA_SHEPA2, ., 5, ., 1, ., 1, 90.50420.77620.7816yesno
P11043AROA_PETHY2, ., 5, ., 1, ., 1, 90.76520.98600.8197N/Ano
P23981AROA1_TOBAC2, ., 5, ., 1, ., 1, 90.73950.98130.8127N/Ano
Q8EEH8AROA_SHEON2, ., 5, ., 1, ., 1, 90.51420.76920.7746yesno
P17688AROA_BRANA2, ., 5, ., 1, ., 1, 90.77100.98130.8158N/Ano
P19688AROA_YERE82, ., 5, ., 1, ., 1, 90.53600.76920.7710yesno
A9R7I2AROA_YERPG2, ., 5, ., 1, ., 1, 90.52160.76920.7710yesno
A4W8S8AROA_ENT382, ., 5, ., 1, ., 1, 90.52440.76920.7728yesno
A0KWN7AROA_SHESA2, ., 5, ., 1, ., 1, 90.520.76920.7746yesno
A8AIH5AROA_CITK82, ., 5, ., 1, ., 1, 90.51000.76920.7728yesno
Q482G5AROA_COLP32, ., 5, ., 1, ., 1, 90.50860.77380.7793yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.190.991
3rd Layer2.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
PLN02338443 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvi 0.0
PRK11860 661 PRK11860, PRK11860, bifunctional 3-phosphoshikimat 1e-134
PRK02427435 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvi 1e-129
cd01556409 cd01556, EPSP_synthase, EPSP synthase domain 1e-128
TIGR01356409 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyl 1e-126
pfam00275415 pfam00275, EPSP_synthase, EPSP synthase (3-phospho 1e-119
COG0128428 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate 1e-112
PRK11861673 PRK11861, PRK11861, bifunctional prephenate dehydr 5e-94
cd01554408 cd01554, EPT-like, Enol pyruvate transferases fami 2e-73
PRK14806 735 PRK14806, PRK14806, bifunctional cyclohexadienyl d 2e-21
cd01555400 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyru 1e-12
cd01553211 cd01553, EPT_RTPC-like, This domain family include 5e-12
PRK09369417 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carb 2e-09
TIGR01072416 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxy 3e-09
COG0766421 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl 3e-09
COG0128428 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate 6e-09
PRK02427435 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvi 1e-07
cd01556409 cd01556, EPSP_synthase, EPSP synthase domain 8e-06
TIGR01072416 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxy 2e-04
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information 
 Score =  695 bits (1796), Expect = 0.0
 Identities = 301/350 (86%), Positives = 323/350 (92%)

Query: 77  ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136
           A EI LQPI+EISGTV LPGSKSLSNRILLLAALSEGTTVVDNLL S+DI +ML ALK L
Sbjct: 1   AEEITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTL 60

Query: 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
           GLNVEED    RA+VEGCGG FP++     ++ELFLGNAGTAMRPLTAAVTAAGGN SY+
Sbjct: 61  GLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYV 120

Query: 197 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
           LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N  GGLPGGKVKLSG +SSQY
Sbjct: 121 LDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQY 180

Query: 257 LTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
           LTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFFI+GGQKY
Sbjct: 181 LTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKY 240

Query: 317 KSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376
           KSPGNA+VEGDASSASYF+AGAA+TGGTVTVEGCGT+SLQGDVKFAEVLEKMGAKV WTE
Sbjct: 241 KSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTE 300

Query: 377 NSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
           NSVTVTGPPRD +G KHL+A+DVNMNKMPDVAMTLAVVALFADGPTAIRD
Sbjct: 301 NSVTVTGPPRDAFGGKHLKAIDVNMNKMPDVAMTLAVVALFADGPTAIRD 350

Length = 443
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain Back     alignment and domain information
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Back     alignment and domain information
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain Back     alignment and domain information
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
COG0128428 AroA 5-enolpyruvylshikimate-3-phosphate synthase [ 100.0
PLN02338443 3-phosphoshikimate 1-carboxyvinyltransferase 100.0
PRK11860 661 bifunctional 3-phosphoshikimate 1-carboxyvinyltran 100.0
PRK11861673 bifunctional prephenate dehydrogenase/3-phosphoshi 100.0
KOG0692 595 consensus Pentafunctional AROM protein [Amino acid 100.0
PF00275419 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 100.0
TIGR01356409 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. 100.0
cd01556409 EPSP_synthase EPSP synthase domain. 3-phosphoshiki 100.0
cd01554408 EPT-like Enol pyruvate transferases family include 100.0
PRK02427435 3-phosphoshikimate 1-carboxyvinyltransferase; Prov 100.0
COG0766421 MurA UDP-N-acetylglucosamine enolpyruvyl transfera 100.0
PRK14806735 bifunctional cyclohexadienyl dehydrogenase/ 3-phos 100.0
PRK09369417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
TIGR01072416 murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe 100.0
cd01555400 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf 100.0
COG0128428 AroA 5-enolpyruvylshikimate-3-phosphate synthase [ 100.0
PRK12830417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
TIGR01356409 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. 100.0
PRK02427435 3-phosphoshikimate 1-carboxyvinyltransferase; Prov 100.0
PRK09369417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
PLN02338443 3-phosphoshikimate 1-carboxyvinyltransferase 100.0
PRK11861673 bifunctional prephenate dehydrogenase/3-phosphoshi 100.0
PRK12830417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
cd01556409 EPSP_synthase EPSP synthase domain. 3-phosphoshiki 100.0
PF00275419 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 100.0
cd01555400 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf 100.0
TIGR01072416 murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe 100.0
cd01554408 EPT-like Enol pyruvate transferases family include 99.97
PRK11860 661 bifunctional 3-phosphoshikimate 1-carboxyvinyltran 99.97
COG0766421 MurA UDP-N-acetylglucosamine enolpyruvyl transfera 99.96
PRK14806735 bifunctional cyclohexadienyl dehydrogenase/ 3-phos 99.94
KOG0692595 consensus Pentafunctional AROM protein [Amino acid 99.86
cd01553211 EPT_RTPC-like This domain family includes the Enol 99.45
cd01553211 EPT_RTPC-like This domain family includes the Enol 99.12
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 96.55
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 96.33
cd00874326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 94.63
TIGR03399326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 93.97
TIGR03400360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 93.07
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 92.84
PRK04204343 RNA 3'-terminal-phosphate cyclase; Provisional 92.69
cd00875341 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai 92.2
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 91.78
cd00295338 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA 90.63
KOG3980361 consensus RNA 3'-terminal phosphate cyclase [RNA p 89.08
TIGR03400 360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 80.23
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-59  Score=467.87  Aligned_cols=322  Identities=43%  Similarity=0.654  Sum_probs=284.2

Q ss_pred             CCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCC
Q 014155           85 IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQ  164 (429)
Q Consensus        85 ~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~  164 (429)
                      ..+++|+|.+|||||++||+|++|+|++|+++|+|++.++|+..+++++++||++|+.++  ..++|+|.++.+..+   
T Consensus        10 ~~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~~~~~~---   84 (428)
T COG0128          10 PSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGGELKEP---   84 (428)
T ss_pred             CCccceEEECCCCccHHHHHHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCCCcCCC---
Confidence            356899999999999999999999999999999999999999999999999999999755  589999987533333   


Q ss_pred             CCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCe
Q 014155          165 TGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG  244 (429)
Q Consensus       165 ~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~  244 (429)
                        ...+++|||||++||++++++.. .++.++++|+.+|++||+.++++.|+++|++|+..++++++|+.|+|+  +.++
T Consensus        85 --~~~l~~GnSGTt~R~l~glla~~-~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~  159 (428)
T COG0128          85 --PAVLDCGNSGTTLRLLTGLLALG-SPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGG  159 (428)
T ss_pred             --CceeeeccchhHHHHHHHHHhcC-CCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcCCEEEECC--CCCc
Confidence              46899999999999999988752 358899999999999999999999999999999877667899999996  7788


Q ss_pred             eEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceee
Q 014155          245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFV  324 (429)
Q Consensus       245 ~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v  324 (429)
                      .+++++++||||++++||+|++..+..++....+..|++|+++|+++|++||++|+.++.  .|+|+|+|++. +.+|.|
T Consensus       160 ~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~--~~~i~~g~~~~-~~~~~V  236 (428)
T COG0128         160 EVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY--RFYIPGGQKLT-PGDYDV  236 (428)
T ss_pred             eEEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc--EEEECCCcccc-CceEEc
Confidence            999999999999999999999887444443333467999999999999999999999863  79999998876 899999


Q ss_pred             cCChhhHHHHHHHHHcc-CCE-EEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeE-EEeCCCCCCCCCCCccceEEeC
Q 014155          325 EGDASSASYFVAGAAVT-GGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV-TVTGPPRDPYGRKHLRAVDVNM  401 (429)
Q Consensus       325 ~~D~s~a~~~lalAa~~-~g~-v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i-~I~g~~~~~~~~~~L~g~~v~~  401 (429)
                      |+|+|+|+||+++|+++ +.+ ++++|+..+  ++|..++++|++||++|++.+++. +|.+.       ..|+|++||+
T Consensus       237 pgD~SSAafflaAaai~~~~~~i~~~~v~~~--~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~-------~~l~gi~vd~  307 (428)
T COG0128         237 PGDYSSAAFFLAAAAITPRSTGITLKNVQPN--PTDKGILDVLEKMGADIEIGDDSVLRVRGS-------GELKGIEVDM  307 (428)
T ss_pred             CCChhhHHHHHHHHHhcCCCceeeeccCCcC--cchhHHHHHHHHcCCeEEEccCceEEEeec-------CCccCeEeCc
Confidence            99999999999999998 556 777776542  345778899999999999998885 88875       3599999999


Q ss_pred             CCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155          402 NKMPDVAMTLAVVALFADGPTAIRDGM  428 (429)
Q Consensus       402 ~~~pr~am~lav~al~A~G~s~I~~a~  428 (429)
                      +++||++|++|++|+||+|+|+|+|+.
T Consensus       308 ~~~pD~~p~lAvlAa~A~g~t~I~n~~  334 (428)
T COG0128         308 DDMPDLAPTLAVLAAFAEGTTRIRNAE  334 (428)
T ss_pred             ccCchHHHHHHHHHHhcCCCeEEEchH
Confidence            999999999999999999999999974

>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>cd01556 EPSP_synthase EPSP synthase domain Back     alignment and domain information
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed Back     alignment and domain information
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed Back     alignment and domain information
>cd01556 EPSP_synthase EPSP synthase domain Back     alignment and domain information
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3nvs_A450 1.02 Angstrom Resolution Crystal Structure Of 3-Pho 1e-72
1g6s_A427 Structure Of Epsp Synthase Liganded With Shikimate- 9e-67
1mi4_A427 Glyphosate Insensitive G96a Mutant Epsp Synthase Li 4e-66
1eps_A427 Structure And Topological Symmetry Of The Glyphosph 4e-66
3fjx_A427 E. Coli Epsp Synthase (T97i) Liganded With S3p Leng 6e-66
2qfs_A427 E.coli Epsp Synthase Pro101ser Liganded With S3p Le 8e-66
2qfq_A427 E. Coli Epsp Synthase Pro101leu Liganded With S3p L 2e-65
3fk0_A427 E. Coli Epsp Synthase (Tips Mutation) Liganded With 5e-65
1q36_A427 Epsp Synthase (Asp313ala) Liganded With Tetrahedral 4e-62
3ti2_A228 1.90 Angstrom Resolution Crystal Structure Of N-Ter 7e-44
1p88_A216 Substrate-Induced Structural Changes To The Isolate 3e-32
4gfp_A462 2.7 Angstrom Resolution Structure Of 3-Phosphoshiki 1e-15
3roi_A441 2.20 Angstrom Resolution Structure Of 3-Phosphoshik 4e-15
3tr1_A441 Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltra 2e-12
1rf4_A427 Structural Studies Of Streptococcus Pneumoniae Epsp 1e-11
2bjb_A 462 Mycobacterium Tuberculosis Epsp Synthase In Unligan 6e-11
3rmt_A 455 Crystal Structure Of Putative 5-Enolpyruvoylshikima 8e-11
2o0b_A 450 Mycobacterium Tuberculosis Epsp Synthase In Complex 9e-11
2ggd_A 455 Cp4 Epsp Synthase Ala100gly Liganded With S3p And G 3e-08
2pqd_A445 A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Te 3e-08
2gg4_A 455 Cp4 Epsp Synthase (Unliganded) Length = 455 1e-07
2pqb_A445 Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahed 1e-07
>pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae In Complex With Shikimate-3-Phosphate (Partially Photolyzed) And Glyphosate Length = 450 Back     alignment and structure 
Iteration: 1

 Score =  270 bits (690), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/354 (46%), Positives = 207/354 (58%), Gaps = 17/354 (4%)
Query: 74  QSKASE-IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDA 132
           QS A E + LQPI  ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HML+A
Sbjct: 21  QSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNA 80
Query: 133 LKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGN 192
           L KLG+N           VEG G  F      T  +ELFLGNAGTAMRPL AA+    G+
Sbjct: 81  LTKLGVNYRLSADKTTCEVEGLGQAF----HTTQPLELFLGNAGTAMRPLAAALCLGQGD 136
Query: 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXX 252
             Y+L G PRM+ERPIG LV  L+Q GA ++ +   N PP+RI                 
Sbjct: 137 --YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQ-GTGLQAGTVTIDGSI 193
Query: 253 XXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312
             Q+            G V I+I+ +L+S PY+++TL +ME+FGV V + D +  F I  
Sbjct: 194 SSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFVIPA 252
Query: 313 GQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKV 372
           GQ Y SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA++
Sbjct: 253 GQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQI 312
Query: 373 TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
            W ++ V           R  L AVD++ N +PD AMT+A  ALFA G TAIR+
Sbjct: 313 EWGDDYVIAR--------RGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRN 358
>pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3- Phosphate And Glyphosate Length = 427 Back     alignment and structure
>pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded With Shikimate-3-Phosphate Length = 427 Back     alignment and structure
>pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate 5-enol- Pyruvylshikimate-3-phosphate Synthase: A Distinctive Protein Fold Length = 427 Back     alignment and structure
>pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p Length = 427 Back     alignment and structure
>pdb|2QFS|A Chain A, E.coli Epsp Synthase Pro101ser Liganded With S3p Length = 427 Back     alignment and structure
>pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p Length = 427 Back     alignment and structure
>pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p Length = 427 Back     alignment and structure
>pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral Reaction Intermediate Length = 427 Back     alignment and structure
>pdb|3TI2|A Chain A, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase From Vibrio Cholerae Length = 228 Back     alignment and structure
>pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N- Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate Synthase Length = 216 Back     alignment and structure
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In A Second Conformational State Length = 462 Back     alignment and structure
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 Back     alignment and structure
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 Back     alignment and structure
>pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase, Tetrahedral Intermediate Bound State Length = 427 Back     alignment and structure
>pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded State Length = 462 Back     alignment and structure
>pdb|3RMT|A Chain A, Crystal Structure Of Putative 5-Enolpyruvoylshikimate-3-Phosphate Synthase From Bacillus Halodurans C-125 Length = 455 Back     alignment and structure
>pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With S3p (Partially Photolyzed) Length = 450 Back     alignment and structure
>pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate Length = 455 Back     alignment and structure
>pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Reaction Intermediate Analog Length = 445 Back     alignment and structure
>pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded) Length = 455 Back     alignment and structure
>pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Intermediate Analog Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3nvs_A450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 1e-170
2o0b_A 450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 1e-151
3rmt_A 455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 4e-52
3rmt_A455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 3e-04
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 2e-43
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 7e-04
1rf6_A427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 4e-43
2pqc_A 445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 2e-42
2pqc_A445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 9e-05
4fqd_A 479 NIKO protein; beta/alpha inverse barrel, enolpyruv 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1ejd_A419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 2e-08
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 4e-08
3r38_A 454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 1e-06
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Length = 450 Back     alignment and structure
 Score =  483 bits (1245), Expect = e-170
 Identities = 182/357 (50%), Positives = 232/357 (64%), Gaps = 16/357 (4%)

Query: 70  TAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHM 129
              + +    + LQPI  ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HM
Sbjct: 18  LYFQSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHM 77

Query: 130 LDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA 189
           L+AL KLG+N           VEG G  F         +ELFLGNAGTAMRPL AA+   
Sbjct: 78  LNALTKLGVNYRLSADKTTCEVEGLGQAFHTT----QPLELFLGNAGTAMRPLAAALCLG 133

Query: 190 GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249
            G+  Y+L G PRM+ERPIG LV  L+Q GA ++ +   N PP+RI G G L  G V + 
Sbjct: 134 QGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTG-LQAGTVTID 190

Query: 250 GKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFF 309
           G +SSQ+LTA LM+APLA G V I+I+ +L+S PY+++TL +ME+FGV V + D +  F 
Sbjct: 191 GSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFV 249

Query: 310 IQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMG 369
           I  GQ Y SPG   VEGDASSASYF+A AA+ GG V V G G +S+QGD++FA+ LEKMG
Sbjct: 250 IPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMG 309

Query: 370 AKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
           A++ W ++ V              L AVD++ N +PD AMT+A  ALFA G TAIR+
Sbjct: 310 AQIEWGDDYVIARRGE--------LNAVDLDFNHIPDAAMTIATTALFAKGTTAIRN 358
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Length = 450 Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Length = 455 Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Length = 455 Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 3tr1_A Length = 441 Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 3tr1_A Length = 441 Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Length = 427 Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Length = 445 Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Length = 445 Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Length = 479 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Length = 419 Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Length = 425 Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Length = 454 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
3nvs_A450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
2o0b_A 450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 100.0
3rmt_A 455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 100.0
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
1rf6_A427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 100.0
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
4fqd_A 479 NIKO protein; beta/alpha inverse barrel, enolpyruv 100.0
3r38_A 454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
2pqc_A 445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 100.0
1ejd_A419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 100.0
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
3nvs_A450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
3rmt_A455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 100.0
2o0b_A450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 100.0
1rf6_A427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 100.0
3r38_A454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.98
4fqd_A479 NIKO protein; beta/alpha inverse barrel, enolpyruv 99.97
2pqc_A445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 99.97
1ejd_A419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 99.97
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.97
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 94.08
3pqv_A365 RCL1 protein; RTC-like, cyclase-like, modular, alp 90.59
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 84.01
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Back     alignment and structure
Probab=100.00  E-value=8.2e-58  Score=472.12  Aligned_cols=338  Identities=54%  Similarity=0.865  Sum_probs=303.6

Q ss_pred             cCCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeC
Q 014155           75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC  154 (429)
Q Consensus        75 ~~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~  154 (429)
                      +.|+.+.|+|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++..+++|+|.
T Consensus        23 ~~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~g~  102 (450)
T 3nvs_A           23 NAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGL  102 (450)
T ss_dssp             --CCEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECC
T ss_pred             CccceEEEcCCCcceEEEEeCCcHHHHHHHHHHHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEcCCccEEEEeCC
Confidence            34889999999999999999999999999999999999999999999999999999999999999998654226999998


Q ss_pred             CCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEE
Q 014155          155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVR  234 (429)
Q Consensus       155 gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~  234 (429)
                      ++.+..+ .   ...+++||||+++|||+|+++.  .+++++++|+|+|++||+.+|++.|++||++|+..++++++|++
T Consensus       103 ~~~~~~~-~---~~~l~~g~sgt~~R~l~~~la~--~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~~  176 (450)
T 3nvs_A          103 GQAFHTT-Q---PLELFLGNAGTAMRPLAAALCL--GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLR  176 (450)
T ss_dssp             SSCCBCS-S---CEEEECTTCHHHHHHHHHHTTS--SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEE
T ss_pred             CCCcCCC-C---CceEEccCccchHHHHHHHHhc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeEE
Confidence            6444332 1   2368899999999999997653  57889999999999999999999999999999985555788999


Q ss_pred             EecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCc
Q 014155          235 INGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ  314 (429)
Q Consensus       235 I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~  314 (429)
                      |+|+ +++++++++++++||||++++||||+++.|+++|++.++..++||+++|+++|++||++|+.+++ +.|+|+|.+
T Consensus       177 I~g~-~l~gg~i~i~g~~sSq~~s~lLlAa~la~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g~-~~i~I~g~~  254 (450)
T 3nvs_A          177 IQGT-GLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDY-QEFVIPAGQ  254 (450)
T ss_dssp             EECC-CCCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETT-TEEEECTTC
T ss_pred             EEcC-CcCceEEEeCCCCcHHHHHHHHHHHHHCCCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecCC-cEEEEcCCc
Confidence            9997 69999999999999999999999999999999999876666889999999999999999998764 589999987


Q ss_pred             cccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCc
Q 014155          315 KYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHL  394 (429)
Q Consensus       315 ~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L  394 (429)
                      +|+.+.++.+++|+++|+||+++|++++|+++|+|+..+++|+|..+++.|++||++|+++++++++.+.        +|
T Consensus       255 ~l~~~~~~~v~~D~s~As~~l~aaal~~g~v~i~~~~~~~~~~D~~i~~~L~~mGa~i~~~~~~i~v~~~--------~L  326 (450)
T 3nvs_A          255 SYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARRG--------EL  326 (450)
T ss_dssp             CCBCCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGGGGHHHHHHHHTCEEEECSSEEEEECC--------CC
T ss_pred             cccCCcceEecCCHHHHHHHHHHHHhcCCeEEEccCCcccccchHHHHHHHHHcCCeEEEeCCEEEEecC--------Cc
Confidence            7863358999999999999999999999999999999999999999999999999999999999999864        59


Q ss_pred             cceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155          395 RAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM  428 (429)
Q Consensus       395 ~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~  428 (429)
                      +|++++..++||++|+++++|++|+|+++|+|+.
T Consensus       327 ~g~~i~~~~~PD~~~~l~~~aa~A~G~t~I~~~~  360 (450)
T 3nvs_A          327 NAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVY  360 (450)
T ss_dssp             BCCEEECTTCTTTHHHHHHHGGGSBSCEEEESCG
T ss_pred             CcEEeecCCCcCHHHHHHHHHHHCCCCEEEechh
Confidence            9999999999999999999999999999999863
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A Back     alignment and structure
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Back     alignment and structure
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Back     alignment and structure
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Back     alignment and structure
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 429
d1g6sa_427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 2e-50
d1g6sa_427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 4e-04
d1rf6a_427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 4e-46
d1rf6a_427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 4e-08
d1p88a_216 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 3e-38
d1ejda_419 d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl 9e-35
d1ejda_419 d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl 4e-07
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 427 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Escherichia coli [TaxId: 562]

 Score =  174 bits (440), Expect = 2e-50
 Identities = 156/349 (44%), Positives = 211/349 (60%), Gaps = 17/349 (4%)

Query: 80  IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
           + LQPI  + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL  LG++
Sbjct: 4   LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63

Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
                   R  + G GG           +             L        G+   +L G
Sbjct: 64  YTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC------LGSNDIVLTG 117

Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
            PRM+ERPIG LV  L+  GA +  +   N PP+R+  +GG  GG V + G +SSQ+LTA
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTA 175

Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
           LLM APLA  +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSP 234

Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
           G   VEGDASSASYF+A AA+ GGTV V G G +S+QGD++FA+VLEKMGA + W ++  
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDD-- 292

Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428
                      R  L A+D++MN +PD AMT+A  ALFA G T +R+  
Sbjct: 293 ------YISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIY 335
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 427 Back     information, alignment and structure
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Length = 427 Back     information, alignment and structure
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Length = 427 Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 216 Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Length = 419 Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Length = 419 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
d1g6sa_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1rf6a_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1ejda_419 UDP-N-acetylglucosamine enolpyruvyl transferase (E 100.0
d1p88a_216 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.97
d1g6sa_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.97
d1ejda_419 UDP-N-acetylglucosamine enolpyruvyl transferase (E 99.83
d1rf6a_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.74
d1p88a_216 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.15
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 95.2
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 88.11
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-54  Score=444.29  Aligned_cols=335  Identities=51%  Similarity=0.850  Sum_probs=303.2

Q ss_pred             CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCC
Q 014155           77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG  156 (429)
Q Consensus        77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg  156 (429)
                      |..+.|+|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++...+++.|.++
T Consensus         1 M~~l~i~p~~~l~G~i~~pgsKs~s~R~l~~aaLa~g~s~i~n~~~~~Dv~~~~~~L~~LG~~i~~~~~~~~i~i~g~g~   80 (427)
T d1g6sa_           1 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG   80 (427)
T ss_dssp             CCEEEECCCCEEEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSCCEEEECCSS
T ss_pred             CCcEEEcCCCeeEEEEEcCCcHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHHHcCCEEEEeCCceEEEEEeCCC
Confidence            77899999989999999999999999999999999999999999999999999999999999999987767889988875


Q ss_pred             CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEe
Q 014155          157 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN  236 (429)
Q Consensus       157 ~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~  236 (429)
                      .....    ....+++|++|+++|+++++++.  .+.++.++|+++|+.||+.+|++.|++||++|+..++.+++|+.++
T Consensus        81 ~~~~~----~~~~i~~g~sgt~~r~l~~l~~~--~~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~~~~p~~i~  154 (427)
T d1g6sa_          81 PLHAE----GALELFLGNAGTAMRPLAAALCL--GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQ  154 (427)
T ss_dssp             CCCCC----TTEEEECTTCHHHHHHHHHHTTS--SEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTSSCEEEE
T ss_pred             ccccc----ccceeeccccchheeeeeeeecc--cceEEeccccchhccchhhhHHHHHHhcCCEEEEeecccceeEEec
Confidence            43322    13578999999999999876643  6888999999999999999999999999999998666667899999


Q ss_pred             cCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccc
Q 014155          237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY  316 (429)
Q Consensus       237 g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l  316 (429)
                      |+  +.+.+++++++.|||++++++|||+++.++++|+...+..|+||+++|+++|++||++++..++ +.+.+.|++++
T Consensus       155 g~--~~~~~i~~~~~~Ssq~~s~lllaA~~~~~~~~i~~~~~~~S~p~v~~t~~~l~~~G~~i~~~~~-~~~~~~~~~~~  231 (427)
T d1g6sa_         155 GG--FTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHY-QQFVVKGGQSY  231 (427)
T ss_dssp             EC--CCCEEEEEEESSCTHHHHHHHHHGGGSSSCEEEEEEEEECSTHHHHHHHHHHHHTTCCCEEETT-TEEEECSSCCC
T ss_pred             CC--CcceeEEECCccCcHHHHHHHHHHHhccCCcEEEeccccccCchhhhchhhhcccccccccccc-ccccccCcccc
Confidence            84  7889999999999999999999999999999998766667999999999999999999998875 57788877665


Q ss_pred             cCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccc
Q 014155          317 KSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA  396 (429)
Q Consensus       317 ~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g  396 (429)
                      ..+.++.+|+|+++|+||+++|++++|+++++|+..++.|+|..++++|++||+++++.++.+++.+.        .+++
T Consensus       232 ~~~~~~~v~~D~s~Aa~~~~aa~l~~g~i~i~~~~~~~~~~d~~~~~~l~~~G~~i~~~~~~~~~~~~--------~l~~  303 (427)
T d1g6sa_         232 QSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRG--------ELNA  303 (427)
T ss_dssp             BCCSEEECCBCHHHHHHHHHHHHHHEEEEEEESCCTTCCCGGGGHHHHHHHHTCEEEECSSEEEEECC--------CCBC
T ss_pred             cCCceEeccchhhhhhHHHHHHHhhcCceeecccccccccchhhhhhhhhhccccEEEeccccccccc--------cccc
Confidence            54788999999999999999999999999999999999999999999999999999999999887764        6899


Q ss_pred             eEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155          397 VDVNMNKMPDVAMTLAVVALFADGPTAIRDGM  428 (429)
Q Consensus       397 ~~v~~~~~pr~am~lav~al~A~G~s~I~~a~  428 (429)
                      +++|..++||.+|.+++++++++|.++|+|..
T Consensus       304 ~~~d~~~~pd~~p~l~~la~~a~g~s~~~g~~  335 (427)
T d1g6sa_         304 IDMDMNHIPDAAMTIATAALFAKGTTTLRNIY  335 (427)
T ss_dssp             CEEECTTSTTTHHHHHHHGGGSBSCEEEESCG
T ss_pred             eeccccccCCcchhHHHHHhhhcCccceeccc
Confidence            99999999999999999999999999999864
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure