Citrus Sinensis ID: 014918

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Secondary Structure (PSIPRED)
ccccHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccEccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MPDNRQVKSNAVANQSADNIEEAIWRLKihdnqegggvaqaspyparpgepdclfyrrtglcgygsncrfnhpayaaQGAQYreelperngqpdcgyylktgtckygstckyhhpkdrngagpvsfnilglpmrqdekscpyymrtgsflpssglqyagslptwslqrapylssrlqgtqsymplivspsqgivpapgwntymgnigplsptsiagsnliyssrnqgdlgaGAQMHILSassqnlperpdqpdcryymntgtckygadckfhhpkeriaqsaasnigplglpsrpgqaicsnysmygickfgptcrfdhpyagypinyglslpplsildsslmnhqaisathsietspdasskipnwvqnsdavsvqhqnpdmknsttknsddsskvdhpphsvpncsepphdqsn
Flexible Loop (DISEMBL)
mpdnrqvksnavanqsadNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHpphsvpncsepphdqsn
Low Complexity Region (SEG)
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGlslpplsildsslMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Disordered region (IsUnstruct)
*********************EAIWRLKIH********************PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR********QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIY********************************CRYYMNTGTCKYGADCKFHHPKE*I**********L*****PGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSL**************************************************************************
Disordered Region (DISOPRED)
**************************************************PDCLFYRRTGLCGYGSNCR**********************QPDCGYYLKTGTCKYGSTCKY********************MRQDEKSCPYYMRTGSFLPSSGLQY*GSLP*W***********LQ*TQSY*******************************************************************************TCKY*****************************PGQAICSNYSMYGICKFGPTCRFDH*************************************************************************************************
Disordered Region (DISEMBL)
*************NQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISAT***********KIPNWVQNSDA*******************************************
Disordered Region (DISPRO)
**********************************************RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA*******EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSL**********************P***************************************************************RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY***********************************************************************DSSK********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q94AD9	404	Zinc finger CCCH domain-c	yes	no	0.862	0.888	0.459	5e-93
O48772	453	Zinc finger CCCH domain-c	no	no	0.891	0.818	0.403	2e-78
Q2R4J4	444	Zinc finger CCCH domain-c	yes	no	0.824	0.772	0.412	5e-73
Q9SWF9	417	Zinc finger CCCH domain-c	N/A	no	0.718	0.717	0.424	2e-72
Q5JLB5	439	Zinc finger CCCH domain-c	no	no	0.721	0.683	0.413	4e-71
Q2QT65	454	Zinc finger CCCH domain-c	no	no	0.75	0.687	0.402	5e-70
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.790	0.828	0.389	6e-68
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.692	0.615	0.372	2e-58
Q8L7N8	375	Zinc finger CCCH domain-c	no	no	0.764	0.848	0.355	4e-57
Q6NPN3	465	Zinc finger CCCH domain-c	no	no	0.723	0.647	0.371	1e-56

>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1

 Score =  341 bits (875), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/427 (45%), Positives = 250/427 (58%), Gaps = 68/427 (15%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61  LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTG-------------------------SFLPSSG 154
           GA PV FN++GLPMR  EK CPYY+RTG                         S  P++ 
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180

Query: 155 LQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSI 214
           L+YA  L   S         R Q  QSY+P++VSPSQG +P  GW  YM           
Sbjct: 181 LRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM----------- 226

Query: 215 AGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHH 273
           A SN +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ H
Sbjct: 227 AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSH 286

Query: 274 PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSL 332
           P  RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP +    SL
Sbjct: 287 PGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSL 346

Query: 333 PPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSD 392
           P  +   S +  HQ IS T             PN    SD+ S+ +  PD+K    K S 
Sbjct: 347 P--TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESS 384

Query: 393 DSSKVDH 399
           ++ K D+
Sbjct: 385 ETEKPDN 391

Possesses RNA-binding and ribonuclease activities in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1

 Score =  293 bits (750), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/459 (40%), Positives = 251/459 (54%), Gaps = 88/459 (19%)

Query: 5   RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
           +QV+++  + +S D IE+   R+K++++     + Q+SPYP RPGE DC F+ RTG CGY
Sbjct: 6   QQVQNSTGSIRSPDKIEDTFRRMKVNED----NMEQSSPYPDRPGERDCQFFLRTGQCGY 61

Query: 65  GSNCRFNHP-AYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG 122
           G++CR+NHP     QG   YR++LPER GQPDC    +TG CKYG TCKYHHPKDRNGAG
Sbjct: 62  GNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDC----ETGACKYGPTCKYHHPKDRNGAG 117

Query: 123 PVSFNILGLPMRQDEKSCPYYMRTG----------------------------SFLPSSG 154
           PV FN+LGLPMRQ EK CPYYM+TG                            S  PS G
Sbjct: 118 PVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPHPHSQPSNGHSAYAMSSFPSVG 177

Query: 155 LQYAGSLPTWSLQRAPYLS---SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP 211
             YA  +   SL  A Y +    ++  +Q+YMP +V+PSQG++P  GW TYM        
Sbjct: 178 FPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM-------- 229

Query: 212 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 271
                SN IY+ + Q D  + A + +   S  +     ++ +CR++MNTGTCKYG DCK+
Sbjct: 230 ---TASNPIYNMKTQLDSSSSASVAVTVTSHHH--SFSERAECRFFMNTGTCKYGDDCKY 284

Query: 272 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH------------ 319
            HPKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH            
Sbjct: 285 SHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLNPYNNTGL 344

Query: 320 -------PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIETSP-DASSKIPNW 367
                  PY   P    N  +S PP     ++L N + A +   S+ET   D S   P  
Sbjct: 345 AMSSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDDSPTEPEK 404

Query: 368 VQ--------NSDAVSVQHQNPDMKNSTTKNSDDSSKVD 398
            +         SD+ S+ +  PD +  T K  DDS+++D
Sbjct: 405 SEVEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2

 Score =  275 bits (703), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 169/410 (41%), Positives = 221/410 (53%), Gaps = 67/410 (16%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
           EEA+W++ + +  E G      PYP R GEPDC +Y RTGLC +G  C+FNHPA    A 
Sbjct: 36  EEAMWQMNLGEAMEAG------PYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 89

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E P+R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N LG P+R +
Sbjct: 90  AAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPN 149

Query: 137 EKSCPYYMRTG-------------------------------SFLPSSGLQYAGSLPTWS 165
           EK C YY+RTG                               S    S   Y G++  W 
Sbjct: 150 EKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWP 209

Query: 166 LQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP----TSIAGSNL 219
           L R A +++S R  G  SY  +IV P  G+V  PGWN Y   IG  S      +  G+  
Sbjct: 210 LSRSASFIASPRWPGHSSYAQVIVPP--GLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQY 267

Query: 220 IYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYMNTGTCKYG 266
              SR     N GD G      AG+  + + +   +++ PERPDQP+C++YM TG CK+G
Sbjct: 268 YTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFG 327

Query: 267 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 326
           A CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FDHP     +
Sbjct: 328 AVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGT--V 385

Query: 327 NYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 376
            YGL+  P    D S     A    HS E SPD  S     + +SD+  +
Sbjct: 386 MYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1

 Score =  273 bits (697), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/358 (42%), Positives = 207/358 (57%), Gaps = 59/358 (16%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           +EA+W++ +  ++      ++ PYP  PGEPDC +Y RTGLC +G+ CRFNHP     A 
Sbjct: 8   QEAMWQMNLRSSE----TMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI 63

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E PER GQP+C YYLKTGTCK+G+TC++HHPKD+ G AG V+ NILG P+R +
Sbjct: 64  ATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPN 123

Query: 137 EKSCPYYMRTG-------------------------SFLPSS------GLQ-YAGSLPTW 164
           E    YY+RTG                         +  P+       G Q YA  +  W
Sbjct: 124 ESERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNW 183

Query: 165 SLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSS 223
           S   + Y+ S R QG  SY PLI+   QG+V  PGW+TY G +G  SP     ++  Y +
Sbjct: 184 S--SSSYVPSPRWQGPSSYAPLIL--PQGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGT 239

Query: 224 RNQGDL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADC 269
            +QG+L  AG Q            +   +    N+ PERPDQP+C++YM TG CK+GA C
Sbjct: 240 SHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVC 299

Query: 270 KFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 327
           +FHHP+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N
Sbjct: 300 RFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN 357

Pisum sativum (taxid: 3888)

>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2

 Score =  268 bits (686), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 148/358 (41%), Positives = 193/358 (53%), Gaps = 58/358 (16%)

Query: 22  EAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAAQ 78
           E +W+        G G  Q  PYP R GEPDC +Y RTGLC +G +CRFNHP     A  
Sbjct: 58  EGMWQ---QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114

Query: 79  GAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDE 137
            A+ + E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG V  N LG P+R  E
Sbjct: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174

Query: 138 KSCPYYMRTGS-------------------------FLPS------SGLQYAGSLPTWSL 166
           K C YY++TG                            PS      +G  Y G++ +W+ 
Sbjct: 175 KECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAF 234

Query: 167 QRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA----GSNLIY 221
            R  ++ S R Q   +Y P+IV   QG+V  P WN+Y G + P+S +       G+   Y
Sbjct: 235 PRGSFIPSPRWQNPSNYAPMIVP--QGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTY 292

Query: 222 SSRNQGDLGAGAQMHILSASSQN-------------LPERPDQPDCRYYMNTGTCKYGAD 268
            +  Q D  AG Q  +    S +              PERPDQP+C+YYM TG CK+GA 
Sbjct: 293 GTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAV 352

Query: 269 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 326
           CKFHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG  C+FDHP    P+
Sbjct: 353 CKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM 410

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1

 Score =  265 bits (677), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 154/383 (40%), Positives = 208/383 (54%), Gaps = 71/383 (18%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           EEA+W++ +     GG   +++PYP R GEPDC +Y RTGLC +G  C+FNHP     A 
Sbjct: 44  EEAMWQMTL----GGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAV 99

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+   E P R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N+LG PMR +
Sbjct: 100 AAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPN 159

Query: 137 EKSCPYYMRTGSFLPSSGLQ-------------------------------YAGSLPTWS 165
           EK C YY+RTG    +S  +                               Y G++  W+
Sbjct: 160 EKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWT 219

Query: 166 LQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP------------ 211
           L R A +++S R  G   Y  +IV   QG+V  PGWN Y   +G  SP            
Sbjct: 220 LSRSASFIASPRWPGHSGYAQVIV--PQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQY 277

Query: 212 -------TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTC 263
                  T   G + +Y S   G +  G    + +   +N+ PERPDQP+C++YM TG C
Sbjct: 278 YGSRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQFYMKTGDC 333

Query: 264 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323
           K+GA CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C+FDHP   
Sbjct: 334 KFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMG- 392

Query: 324 YPINYGLSLPPLSILDSSLMNHQ 346
             + YG +  P    D S M++Q
Sbjct: 393 -TLMYGSATSPRG--DVSSMHYQ 412

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  258 bits (659), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 150/385 (38%), Positives = 213/385 (55%), Gaps = 56/385 (14%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           ++A+W++ +  ++      +   YP RPGEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 18  QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74  ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133

Query: 137 EKSCPYYMRTG-------------------SFLPSSGLQYAGSLPTWSLQRAPYLSS-RL 176
           E  C Y++RTG                     +P+SG Q   S P WS  RA +++S R 
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQ---SYP-WS--RASFIASPRW 187

Query: 177 QGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMH 236
           Q   SY  LI+   QG+VP  GWN Y G +G +SP+   G++  Y +  Q +        
Sbjct: 188 QDPSSYASLIMP--QGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQS 244

Query: 237 ILSASSQN------------------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI 278
             S S  N                   PERP QP+C++YM TG CK+G  CKFHHP++R 
Sbjct: 245 QGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQ 304

Query: 279 AQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSIL 338
           A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP   +  +   S     ++
Sbjct: 305 APPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETD-EVV 363

Query: 339 DSSLMNHQAISATHSIETSPDASSK 363
           ++S    + +S + + + +  +S K
Sbjct: 364 ETSTGKSRRLSVSETRQAATTSSGK 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 184/349 (52%), Gaps = 61/349 (17%)

Query: 19  NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AY 75
            ++E++WRL +  +           YP RPG PDC +Y RTG+CGYG+ CR+NHP   A 
Sbjct: 27  GLQESMWRLGLGSDS----------YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRAS 76

Query: 76  AAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMR 134
                +   + PER G+P C +YLKTGTCK+G++CK+HHPK+  G+   V  NI G P+R
Sbjct: 77  VEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVR 136

Query: 135 QDEKSCPYYMRTG----------------------------SFLPSSGL----QYAGSLP 162
           + +  C YY++TG                             F PS       QY G   
Sbjct: 137 EGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPDQYGGPSS 196

Query: 163 TWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP--------TS 213
           +  + R     S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP        TS
Sbjct: 197 SLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQHAVGATS 252

Query: 214 IAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 271
           + G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK+G  CKF
Sbjct: 253 LYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKF 312

Query: 272 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
           HHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct: 313 HHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/397 (35%), Positives = 199/397 (50%), Gaps = 79/397 (19%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           + A+W++ +  +   G       YP R GEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 19  QNAMWQMNLGSDDTMGVDGS---YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
             A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G  G VS N+L  P+R +
Sbjct: 76  ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135

Query: 137 EKSCPYYMRTG------------------SFLPS-------SGLQYAGSLPTWSLQRAPY 171
           E  C Y++R G                  + + S       S LQ     P++S  R  +
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLTGQPSYSWSRTSF 195

Query: 172 LSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL 229
           +++  RLQ    +     S SQG + + G+++  GN  PL   ++   N+          
Sbjct: 196 VANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALPRENV---------- 239

Query: 230 GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPL 289
                           PERP QP+C++YM TG CK+G  CKFHHP++R        +  +
Sbjct: 240 ---------------FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSV 284

Query: 290 GLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAIS 349
           GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N   + P  S   SSL    AI+
Sbjct: 285 GLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAIT 341

Query: 350 -------ATHSIETSPDASSKIPNWVQNSDA-VSVQH 378
                   + S+E  P   + +P      D  V  QH
Sbjct: 342 TELRNLLVSSSVEAKP---TSLPETTSAKDTIVDAQH 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1

 Score =  221 bits (562), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 183/355 (51%), Gaps = 54/355 (15%)

Query: 13  ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNH 72
           A  +   IE ++WRL +              +P RP EPDC++Y RTG+CGYGS CRFNH
Sbjct: 22  AQGTETGIEASMWRLGLRGGG-----GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNH 76

Query: 73  PAYAA--QGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVS 125
           P   A   G    E  E PER GQP C ++++TGTCK+G++CKYHHP+   G     PVS
Sbjct: 77  PRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVS 136

Query: 126 FNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLP----------TWSLQRAPYLSSR 175
            N +G P+R  EK C Y+MRTG     S  +Y   +P             L   P +   
Sbjct: 137 LNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPS 196

Query: 176 LQ-----GTQSYMPLIVSPSQ-------------------GIVPAPGWNTYMGNIGPL-S 210
           LQ      +Q Y  ++  P                     G+VP  GWN Y  ++  + S
Sbjct: 197 LQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPS 256

Query: 211 PTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 264
           P +    G++ +Y     S +     +G     +S   Q  P+RP+QP+C+Y+M TG CK
Sbjct: 257 PGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCK 316

Query: 265 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
           +G  C+FHHP E  A   AS +  +GLP RPG   C++++ +GICKFGP C+FDH
Sbjct: 317 FGTSCRFHHPME-AASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
255576147	456	zinc finger protein, putative [Ricinus c	0.975	0.890	0.658	1e-164
224129058	446	predicted protein [Populus trichocarpa]	0.973	0.908	0.638	1e-159
225447159	450	PREDICTED: zinc finger CCCH domain-conta	0.990	0.915	0.625	1e-156
224068913	450	predicted protein [Populus trichocarpa]	0.980	0.906	0.621	1e-153
147819907	460	hypothetical protein VITISV_020358 [Viti	0.913	0.826	0.571	1e-135
449450892	430	PREDICTED: zinc finger CCCH domain-conta	0.944	0.913	0.532	1e-123
357493165	422	Zinc finger CCCH domain-containing prote	0.870	0.857	0.559	1e-120
356554539	417	PREDICTED: zinc finger CCCH domain-conta	0.923	0.920	0.524	1e-119
356501261	415	PREDICTED: zinc finger CCCH domain-conta	0.918	0.920	0.524	1e-119
18390466	404	zinc finger CCCH domain-containing prote	0.862	0.888	0.459	3e-91

>gi|255576147|ref|XP_002528968.1| zinc finger protein, putative [Ricinus communis] gi|223531614|gb|EEF33442.1| zinc finger protein, putative [Ricinus communis]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 295/448 (65%), Positives = 341/448 (76%), Gaps = 42/448 (9%)

Query: 5   RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
           RQVKSNAV+NQS DNIEEAIWRLKIHDNQE GG+A +SPYP RPGEPDC++Y RTGLCGY
Sbjct: 12  RQVKSNAVSNQSPDNIEEAIWRLKIHDNQEQGGMAPSSPYPDRPGEPDCVYYLRTGLCGY 71

Query: 65  GSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV 124
           G+NCRFNHP YAAQG Q++EELPER GQPDCGYYLKTGTCKYGSTCKYHHP+DRNGAGPV
Sbjct: 72  GNNCRFNHPPYAAQGNQFKEELPERVGQPDCGYYLKTGTCKYGSTCKYHHPRDRNGAGPV 131

Query: 125 SFNILGLPMRQDEKSCPYYMRTGSF----------------------------------- 149
           SFNI+GLPMRQDEKSCPYYMRTGS                                    
Sbjct: 132 SFNIVGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPAPLGTGLPFTGPAASGPMASSN 191

Query: 150 LPSSGLQYAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP 208
           LPSSGL Y G LPTWSL RAPY+S  RLQG Q+YMP ++SPSQG+V A GWNTY+GN+ P
Sbjct: 192 LPSSGLPYVGGLPTWSLPRAPYVSGPRLQGPQTYMPAVLSPSQGVVAAQGWNTYVGNLSP 251

Query: 209 LSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD 268
           +S  S+ GS+++Y+SRNQ + G+  Q+H+LS +S NLPERPDQP+CRY+MNTGTCKYG+D
Sbjct: 252 MSSGSVLGSSIVYNSRNQSESGSSGQVHMLSTTSSNLPERPDQPECRYFMNTGTCKYGSD 311

Query: 269 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINY 328
           CK+HHPKERIAQ A ++IGP+GLPSRPGQ ICSNYSMYG+CKFGPTCRFDHP+ GYP  Y
Sbjct: 312 CKYHHPKERIAQLATNSIGPVGLPSRPGQPICSNYSMYGLCKFGPTCRFDHPFTGYPYGY 371

Query: 329 GLSLPPLSILDSSLMNHQAIS-ATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNST 387
            LSL PLSI+DSSL+++  +S    S E+    SSK P+WVQN D  S +HQN D     
Sbjct: 372 SLSLQPLSIIDSSLLSYPRMSPPALSSESPISLSSKFPDWVQNPDGASSKHQNSDRN--- 428

Query: 388 TKNSDDSSKV--DHPPHSVPNCSEPPHD 413
           TK SDD  +     PPHS    SEP HD
Sbjct: 429 TKISDDQPEQAGSPPPHSSQASSEPSHD 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129058|ref|XP_002320490.1| predicted protein [Populus trichocarpa] gi|222861263|gb|EEE98805.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/454 (63%), Positives = 337/454 (74%), Gaps = 49/454 (10%)

Query: 1   MPD--NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRR 58
           MPD  NRQVKSNAV+NQSA+NIEEAIWRLKIHD+QE GG+AQ+SPYP RPG PDC +Y R
Sbjct: 1   MPDHNNRQVKSNAVSNQSAENIEEAIWRLKIHDHQEQGGMAQSSPYPDRPGAPDCGYYLR 60

Query: 59  TGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
           TGLCGYGSNCRFNHP YAA GAQ REELPER GQPDCGYYLKTGTCKYGSTCKYHHP+DR
Sbjct: 61  TGLCGYGSNCRFNHPVYAALGAQLREELPERVGQPDCGYYLKTGTCKYGSTCKYHHPRDR 120

Query: 119 NGAGPVSFNILGLPMRQDEKSCPYYMRTGS------------------------------ 148
           NGAGPVSFN LGLPMRQDEKSCPYYMRT S                              
Sbjct: 121 NGAGPVSFNALGLPMRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSFSLTGAAAFG 180

Query: 149 -----FLPSSGLQYAGSLPTWSLQRAPYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTY 202
                 +PSSGL Y G LPTWSL RAP +S + LQG Q+YMP++VSPS GI+P PGWNTY
Sbjct: 181 STGSPIVPSSGLPYVGGLPTWSLPRAPLMSGTNLQGPQAYMPVVVSPSPGIIPVPGWNTY 240

Query: 203 MGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 262
           +GN+ P+S +SI GSN  Y SRNQGD G+G Q+H+LS  S  LPERP QP+CR++M+TGT
Sbjct: 241 VGNLNPMSSSSILGSNRAYDSRNQGDSGSGGQVHLLSTVSPILPERPGQPECRHFMSTGT 300

Query: 263 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 322
           CKYG+DCK+HHPKERIAQ A + +G LGLPSRPGQA+C +YSMYGICKFGPTCR+DHP  
Sbjct: 301 CKYGSDCKYHHPKERIAQLATNTMGLLGLPSRPGQAVCPDYSMYGICKFGPTCRYDHPIH 360

Query: 323 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQNP 381
            YP NY LSLP LSI+DSSL+ +  ++     + +P   SK+P+ + N D  S  +HQNP
Sbjct: 361 TYPYNYSLSLPSLSIMDSSLITYPRMA-----QAAPVTLSKLPDLIHNPDGASYNKHQNP 415

Query: 382 DMKNSTTKNSDDSSKV--DHPPHSVPNCSEPPHD 413
           D   ++TK SDD ++     PPHS    SEP HD
Sbjct: 416 D---TSTKISDDPTEQAGSPPPHSSQASSEPSHD 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447159|ref|XP_002275775.1| PREDICTED: zinc finger CCCH domain-containing protein 12 [Vitis vinifera] gi|297739220|emb|CBI28871.3| unnamed protein product [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/454 (62%), Positives = 339/454 (74%), Gaps = 42/454 (9%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M DNRQV+SN V+N S++N+EEAI RLKIHDNQE G V  +SPYP RPGEPDC++Y RTG
Sbjct: 1   MLDNRQVQSNGVSNPSSENVEEAILRLKIHDNQEEGSVGHSSPYPDRPGEPDCIYYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           LCGYGSNCRFNHPAY+ QGAQYR ELPER GQPDCGY+LKTGTCKYGSTCKYHHP+DR+G
Sbjct: 61  LCGYGSNCRFNHPAYSEQGAQYRGELPERVGQPDCGYFLKTGTCKYGSTCKYHHPRDRHG 120

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTG--------------------------------- 147
           AGPVS NI+GLPMRQ+EK C YYMRTG                                 
Sbjct: 121 AGPVSLNIVGLPMRQEEKPCSYYMRTGLCKFGAACKFHHPQPASAGTVLPATGPAAFGST 180

Query: 148 --SFLPSSGLQYAGSLPTWSLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 204
             S LPSSGL Y G LP WSL RAPY+   R+QG Q+YMP+++SPSQGIVPA GWNTYMG
Sbjct: 181 GSSILPSSGLPYVGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYMG 240

Query: 205 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 264
           N+ P+S T I GSNL+Y+SRNQ + G+  Q+H+LS+   +LPERPDQP+CRY+M+TG+CK
Sbjct: 241 NMSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCK 300

Query: 265 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 324
           YG+DCK+HHPKERIAQ A + +GPLGLP RPGQA+CS+Y++YG+CK+GPTC+FDHP  GY
Sbjct: 301 YGSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGY 360

Query: 325 -PINYGLSLPPLSILDSSLMNHQAISAT-HSIETSPDASSKIPNWVQNSDAVSVQHQNPD 382
              NY LSLPPLSILD SL+ +Q  S+T HS ETSP  SSK P+WVQ +++ S + QNPD
Sbjct: 361 SSYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPD 420

Query: 383 MKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN 416
            K          S +    HS PN SEPP DQS+
Sbjct: 421 TKAPEGPPEQAGSLL----HSSPNSSEPPQDQSD 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068913|ref|XP_002302855.1| predicted protein [Populus trichocarpa] gi|222844581|gb|EEE82128.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/455 (62%), Positives = 330/455 (72%), Gaps = 47/455 (10%)

Query: 1   MPD--NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRR 58
           MPD  NRQVKSNAV+N SADNIEEA WRLKIHD QE GG+AQ+SPYP RPG PDC +Y R
Sbjct: 1   MPDQNNRQVKSNAVSNHSADNIEEAFWRLKIHDPQEQGGMAQSSPYPDRPGVPDCGYYLR 60

Query: 59  TGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
           TGLCGYGSNCR+NHP YAAQG Q REELPER GQPDCGYY+KTGTCKYGSTCKYHHP+DR
Sbjct: 61  TGLCGYGSNCRYNHPIYAAQGTQLREELPERIGQPDCGYYIKTGTCKYGSTCKYHHPRDR 120

Query: 119 NGAGPVSFNILGLPMRQDEKSCPYYMRTGS------------------------------ 148
           NGAGPVSFN LGLPMRQDEKSCPYYMRT S                              
Sbjct: 121 NGAGPVSFNALGLPMRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSLPLTGAAAFG 180

Query: 149 -----FLPSSGLQYAGSLPTWSLQRA-PYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNT 201
                 +PSSGL Y G LPTWSL RA PY+S + LQG Q+YMP++VSPSQGIVP PGWNT
Sbjct: 181 STGSPIVPSSGLPYVGGLPTWSLPRAPPYMSGTHLQGPQAYMPVVVSPSQGIVPVPGWNT 240

Query: 202 YMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTG 261
           Y+GN  P+S +SI GSN  Y SRN GD  +G+  H+LS +   LPERPDQP+CR++M++G
Sbjct: 241 YVGNSNPMSSSSILGSNRAYDSRNHGD--SGSSGHLLSTAIPALPERPDQPECRHFMSSG 298

Query: 262 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 321
           TCKYG+DCK+HHPKERIAQ A + +GP GLP RPGQA+C +YSMYGICKFGPTCR+DHP 
Sbjct: 299 TCKYGSDCKYHHPKERIAQLATNTMGPFGLPLRPGQAVCPDYSMYGICKFGPTCRYDHPL 358

Query: 322 AGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQN 380
             YP NY LSLP LS++DSSL+ +  ++       +P + SK+P+ ++N D  S  +HQN
Sbjct: 359 PTYPYNYSLSLPSLSMMDSSLVTYPRMAQAALSSATPVSLSKLPDLIRNPDGASYNKHQN 418

Query: 381 PDMKNSTTKNSDDSSK--VDHPPHSVPNCSEPPHD 413
            D   S TK  DD ++     PPHS    SEP HD
Sbjct: 419 SD---SNTKTLDDPTEHAGSPPPHSSQASSEPSHD 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819907|emb|CAN76191.1| hypothetical protein VITISV_020358 [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/453 (57%), Positives = 310/453 (68%), Gaps = 73/453 (16%)

Query: 33  QEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQ 92
           +E G V  +SPYP RPGEPDC++Y RTGLCGYGSNCRFNHPAY+ QGAQYR ELPER GQ
Sbjct: 12  KEEGSVGHSSPYPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQGAQYRGELPERVGQ 71

Query: 93  PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTG----- 147
           PDCGY+LKTGTCKYGSTCKYHHP+DR+GAGPV  NI+GLPMRQ+EK C YYMRTG     
Sbjct: 72  PDCGYFLKTGTCKYGSTCKYHHPRDRHGAGPVXLNIVGLPMRQEEKPCSYYMRTGLCKFG 131

Query: 148 ------------------------------SFLPSSGLQYAGSLPTWSLQRAPYLSS-RL 176
                                         S LPSSGL Y G LP WSL RAPY+   R+
Sbjct: 132 AACKFHHPQPASAGTVLPATGPAAFGSTGSSILPSSGLPYVGGLPAWSLPRAPYIPGPRM 191

Query: 177 QGTQSYMPLIVSPSQGIVPAPGWNTYM-------------------------------GN 205
           QG Q+YMP+++SPSQGIVPA GWNTYM                               GN
Sbjct: 192 QGPQTYMPIVLSPSQGIVPAQGWNTYMPHFLVLMKSFHVVNLVYSIDPNEFVICEIPRGN 251

Query: 206 IGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 265
           + P+S T I GSNL+Y+SRNQ + G+  Q+H+LS+   +LPERPDQP+CRY+M+TG+CKY
Sbjct: 252 MSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCKY 311

Query: 266 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY- 324
           G+DCK+HHPKERIAQ A + +GPLGLP RPGQA+CS+Y++YG+CK+GPTC+FDHP  GY 
Sbjct: 312 GSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGYS 371

Query: 325 PINYGLSLPPLSILDSSLMNHQAISAT-HSIETSPDASSKIPNWVQNSDAVSVQHQNPDM 383
             NY LSLPPLSILD SL+ +Q  S+T HS ETSP  SSK P+WVQ +++ S + QNPD 
Sbjct: 372 SYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPDT 431

Query: 384 KNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN 416
           K          S +    HS PN SEPP DQS+
Sbjct: 432 KAPEGPPEQAGSLL----HSSPNSSEPPQDQSD 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450892|ref|XP_004143196.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus] gi|449515163|ref|XP_004164619.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/451 (53%), Positives = 297/451 (65%), Gaps = 58/451 (12%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MPDN QV+ N V NQS D I EA+WRL+I DNQ+GG  A++SPYP RPGEPDCL+Y RTG
Sbjct: 1   MPDNLQVQRNDVPNQSPD-ISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTG 59

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
            C YGSNCRFNHP Y  QGA Y  ELPER GQPDC Y+LKTGTCKYG +CKYHHP+DR G
Sbjct: 60  SCSYGSNCRFNHPVYVGQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRG 119

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGS-------------------------------- 148
           AGPV+FNILGLPMRQ+EKSCPYY+RTGS                                
Sbjct: 120 AGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSG 179

Query: 149 ---FLPSSGLQYAGSLPTWSLQRAPYLSSR-LQGTQSYMPLIVSPSQGIVPAPGWNTYMG 204
              F+PSSG+ Y    P WS+ R  Y+    +QG QSY+P++VSPSQG + A  WNTY+ 
Sbjct: 180 GTPFMPSSGVPY----PAWSMPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVS 235

Query: 205 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 264
           N+ P+ P      NL Y++ N  D  +  Q+  LS S+  LP+RPDQP+CRY+MN GTCK
Sbjct: 236 NVNPILP------NLGYNNINLEDSYSNGQL-ALSTSTPTLPDRPDQPECRYFMNNGTCK 288

Query: 265 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 324
           YG+DCKFHHPK+RIAQSA +    LGLPSRPGQAICS Y+MYG+CK+GP+C+FDHP   Y
Sbjct: 289 YGSDCKFHHPKQRIAQSATNA---LGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSPTY 345

Query: 325 PINYGLSLPPLSILDSSLMNHQAISATHSI-ETSPDASSKIPNWVQNSDAVSVQHQNPDM 383
           P NYG +LP   +LDSS++ + + + T S  ET P   SK   WVQ +D  + + +  D 
Sbjct: 346 PYNYGFTLP---LLDSSIIKYPSNNFTMSSHETLPGTVSKSSEWVQKADPSNNKRRTTDS 402

Query: 384 KNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQ 414
           K       ++++ V     S+P  SE   DQ
Sbjct: 403 KVIIDSTGEEATSVS---CSLPGGSESLQDQ 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493165|ref|XP_003616871.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355518206|gb|AES99829.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/406 (55%), Positives = 270/406 (66%), Gaps = 44/406 (10%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA +N S DNIEEAI RLKI+  ++   V Q+ PYP RPGEPDC++Y RTG
Sbjct: 1   MPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVYYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           +CGYGSNCR+NHPA  +   QY EELPER GQPDC Y+LKTGTCKYGSTCKYHHPKDR G
Sbjct: 61  MCGYGSNCRYNHPANISPVTQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRG 120

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGS-------------------------------F 149
           A PV FN LGLPMRQ+EKSCPYYMRTGS                                
Sbjct: 121 AAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAASPPSTT 180

Query: 150 LPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL 209
           + SSG  YAG  P WS+ R  YLS   Q  QSY+P  +  SQGI+PA  W+ YMG+I P 
Sbjct: 181 VTSSGFPYAGGFPAWSMPRMSYLSG--QAIQSYVPPFLPSSQGIMPALSWSNYMGSINPA 238

Query: 210 SPTSIAGSNLIYSSRN-QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD 268
            PT   GSNL+Y   N  G+  +G Q     A + +LP+RP+QPDC+Y+M+TGTCKYG+D
Sbjct: 239 MPTGFIGSNLVYDYMNPAGETLSGGQ-----AMNSSLPDRPEQPDCKYFMSTGTCKYGSD 293

Query: 269 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINY 328
           CKFHHPKERIAQ+ +  I PLGLP RPG AICS Y +YG+CKFGPTC+FDHP      NY
Sbjct: 294 CKFHHPKERIAQTLS--INPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAISQNY 351

Query: 329 GLSLPPLSILDSSLM-NHQAISATHSIETSPDASSKIPNWVQNSDA 373
           GL  P LS+ D+SL+ N + +S     ETSP   S   + +Q SD 
Sbjct: 352 GLPSPTLSVFDASLLTNPRRLSTVQPAETSPSKQST--DKLQQSDT 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554539|ref|XP_003545603.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/446 (52%), Positives = 282/446 (63%), Gaps = 62/446 (13%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA    S+DNIEEAI RLKI+DN +    AQ++ YP RPGEP+CL+Y RTG
Sbjct: 1   MPENRQVLRNA---DSSDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTG 57

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
            CGYGSNCR++HPA+ + G  Y EELP+R GQPDC Y+LKTG CKYGSTCKYHHPKDR G
Sbjct: 58  ACGYGSNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGMCKYGSTCKYHHPKDRRG 117

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGS-------------------------------- 148
           A PVSFN LG PMRQ+EKSCPYYMRTGS                                
Sbjct: 118 AAPVSFNTLGFPMRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLGAYPLAGGPPTPTST 177

Query: 149 FLPSSGLQYAGSLPTWS-LQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIG 207
            +P+SGL YAG  P WS + R  YLS   QG QSY+P  +  SQG++P   WN YMGN+ 
Sbjct: 178 IIPTSGLSYAGGFPAWSAVPRMSYLSG--QGLQSYVPPFLPSSQGVIPVQSWNNYMGNMN 235

Query: 208 PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 267
           P  P    GSNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCKYG+
Sbjct: 236 PAMPNGFLGSNLVYDYMNLGEPLFGGQ-----AINSALPNRPDQPECRYFMSTGTCKYGS 290

Query: 268 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 327
           DCKFHHPKERI+QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    P N
Sbjct: 291 DCKFHHPKERISQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQN 347

Query: 328 YGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNST 387
           YGL+ P +++LD+ L   + +S     ETSP   S   N +Q+SDA +            
Sbjct: 348 YGLTSPAMNVLDTPLT--RGLSNVQPPETSPSKLSS-DNKLQHSDAKAA----------- 393

Query: 388 TKNSDDSSKVDHPPHSVPNCSEPPHD 413
               D S + D   +S P  +EP HD
Sbjct: 394 --TEDSSKQDDTTSNSFPASAEPLHD 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501261|ref|XP_003519444.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 1 [Glycine max] gi|356501263|ref|XP_003519445.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 2 [Glycine max]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/446 (52%), Positives = 286/446 (64%), Gaps = 64/446 (14%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA    S DNIEEAI  LKI+DN +    AQ++ YP RPGEP+CL+Y RTG
Sbjct: 1   MPENRQVLRNA---DSGDNIEEAIRHLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTG 57

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           +CGYG+NCR++HPA+ + G  Y EELP+R GQPDC Y+LKTGTCKYGSTCKYHHPKDR G
Sbjct: 58  MCGYGTNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGTCKYGSTCKYHHPKDRRG 117

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGS-------------------------------F 149
           A PVSFN LGLPMRQ+EKSCPYYMRTGS                                
Sbjct: 118 AAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTPTSTI 177

Query: 150 LPSSGLQYAGSLPTWS-LQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP 208
           +P+SGL YAG  P WS + R  YLS   QG QSY+P  +S SQG++P   WN YMGN+ P
Sbjct: 178 IPTSGLPYAGGFPAWSAVPRMSYLSG--QGLQSYVPPFLSSSQGVIPVQSWNNYMGNMNP 235

Query: 209 LSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD 268
             P    GSNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCKYG+D
Sbjct: 236 AMPNGFLGSNLVYDYMNLGESLFGGQ-----AINSALPNRPDQPECRYFMSTGTCKYGSD 290

Query: 269 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINY 328
           CKFHHPKER++QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    P NY
Sbjct: 291 CKFHHPKERMSQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNY 347

Query: 329 GLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTT 388
           GL+ P +++LD+ L   + +S     ETSP   S     +Q+SDA +             
Sbjct: 348 GLTSPAMNVLDTPLT--RGLSNVQPPETSPSKLSD--KKLQHSDAKAA------------ 391

Query: 389 KNSDDSSKVDHPP-HSVPNCSEPPHD 413
             ++DSSK D    +S P  +EP H+
Sbjct: 392 --TEDSSKQDDTTLNSFPASAEPLHN 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390466|ref|NP_563725.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] gi|42571337|ref|NP_973759.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] gi|62901489|sp|Q94AD9.1|C3H3_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 3; Short=AtC3H3; AltName: Full=Zinc finger CCCH domain-containing protein ZFN-like 4 gi|15081721|gb|AAK82515.1| At1g04990/F13M7_1 [Arabidopsis thaliana] gi|21360515|gb|AAM47373.1| At1g04990/F13M7_1 [Arabidopsis thaliana] gi|225897880|dbj|BAH30272.1| hypothetical protein [Arabidopsis thaliana] gi|332189654|gb|AEE27775.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] gi|332189655|gb|AEE27776.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 196/427 (45%), Positives = 250/427 (58%), Gaps = 68/427 (15%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61  LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTG-------------------------SFLPSSG 154
           GA PV FN++GLPMR  EK CPYY+RTG                         S  P++ 
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180

Query: 155 LQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSI 214
           L+YA  L   S         R Q  QSY+P++VSPSQG +P  GW  YM           
Sbjct: 181 LRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM----------- 226

Query: 215 AGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHH 273
           A SN +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ H
Sbjct: 227 AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSH 286

Query: 274 PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSL 332
           P  RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP +    SL
Sbjct: 287 PGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSL 346

Query: 333 PPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSD 392
           P  +   S +  HQ IS T             PN    SD+ S+ +  PD+K    K S 
Sbjct: 347 P--TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESS 384

Query: 393 DSSKVDH 399
           ++ K D+
Sbjct: 385 ETEKPDN 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.923	0.950	0.437	8.2e-83
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.704	0.781	0.389	5.1e-58
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.629	0.559	0.394	2.8e-50
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.629	0.659	0.386	8.8e-47
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.673	0.602	0.339	1.4e-46
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.663	0.597	0.354	1.8e-46
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.629	0.5	0.351	2.8e-41
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.586	0.544	0.351	1.7e-36
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.189	0.963	0.506	3.5e-21
ZFIN|ZDB-GENE-990806-20	319	cth1 "cth1" [Danio rerio (taxi	0.305	0.398	0.272	1.2e-08

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 179/409 (43%), Positives = 237/409 (57%)

Query:     1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
             M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct:     5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query:    61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
             LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct:    61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query:   120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGT 179
             GA PV FN++GLPMR  EK CPYY+RTG+       ++    P      A  +SS     
Sbjct:   121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180

Query:   180 QSYMP-LIVSPSQGIVPAPGW-NTYMGNI-----GPLSPTS----IAGSNLIYSSRNQGD 228
               Y   L +  + G +P P    +Y+  +     G L P      +A SN +Y+ +NQ  
Sbjct:   181 LRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPY 240

Query:   229 L-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 287
               G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ HP  RI+Q   S I 
Sbjct:   241 YSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLIN 300

Query:   288 PLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQA 347
             P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP                   HQ 
Sbjct:   301 PFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP-GLTMATSLPTPFASPVTTHQR 359

Query:   348 ISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKN-SDDSS 395
             IS T +   S   S+  P+  + S     + + PD  N   ++ S+D+S
Sbjct:   360 ISPTPNRSDSKSLSNGKPDVKKESS----ETEKPD--NGEVQDLSEDAS 402

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 124/318 (38%), Positives = 180/318 (56%)

Query:    21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
             + A+W++ +  +   G     S YP R GEPDC +Y RTGLC +GS CRFNHP       
Sbjct:    19 QNAMWQMNLGSDDTMG--VDGS-YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75

Query:    78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
               A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G  G VS N+L  P+R +
Sbjct:    76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135

Query:   137 EKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQ-RAPYLSSRLQGTQSYMPLIVSPSQGIVP 195
             E  C Y++R G        ++ G+      Q ++  L   ++G+  Y  L     Q   P
Sbjct:   136 EDDCSYFLRIGQ------CKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLTGQ---P 186

Query:   196 APGWN--TYMGNIGPLS-PTSIAGSNL--IYSSRNQGDLGAGAQMHILSASSQNL-PERP 249
             +  W+  +++ N   L  P+  A  +   ++SS      G    +   +   +N+ PERP
Sbjct:   187 SYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHS--GNSVPLGFYALPRENVFPERP 244

Query:   250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGIC 309
              QP+C++YM TG CK+G  CKFHHP++R        +  +GLP RPG+ +C  YS YGIC
Sbjct:   245 GQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGIC 304

Query:   310 KFGPTCRFDHPYAGYPIN 327
             KFGP+C+FDHP   +  N
Sbjct:   305 KFGPSCKFDHPMRVFTYN 322

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 119/302 (39%), Positives = 162/302 (53%)

Query:    38 VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREEL-----PERNGQ 92
             V     YP R GEP C FY +TG C +G++C+F+HP  A  G+     L     P R G 
Sbjct:    81 VRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAG-GSMSHVPLNIYGYPVREGD 139

Query:    93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCP-YYMRTGSFLP 151
              +C YYLKTG CK+G TCK+HHP+      P    +   P      S P +Y    S +P
Sbjct:   140 NECSYYLKTGQCKFGITCKFHHPQ------PAGTTVPPPPA-----SAPQFYPSVQSLMP 188

Query:   152 SSGLQYAGSLPTWSLQRAPYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP- 208
                 QY G  P+ SL+ A  L   S +QG  +Y P++++P  G+VP PGW+ Y   + P 
Sbjct:   189 D---QYGG--PSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPA 239

Query:   209 LSP--------TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYM 258
             LSP        TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+
Sbjct:   240 LSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYL 299

Query:   259 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 318
              TG CK+G  CKFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FD
Sbjct:   300 KTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFD 359

Query:   319 HP 320
             HP
Sbjct:   360 HP 361

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 124/321 (38%), Positives = 167/321 (52%)

Query:    21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
             ++A+W++ +  ++      +   YP RPGEPDC +Y RTGLC +GS CRFNHP       
Sbjct:    18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73

Query:    78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
               A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct:    74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133

Query:   137 EKSCPYYMRTG--SFLPSSGLQYAGSLPT-------------WSLQRAPYLSS-RLQGTQ 180
             E  C Y++RTG   F  +    +    PT             WS  RA +++S R Q   
Sbjct:   134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWS--RASFIASPRWQDPS 191

Query:   181 SYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGD-LGAGAQMHILS 239
             SY  LI+ P QG+VP  GWN Y G +G +SP+   G++  Y +  Q + + +G+Q    S
Sbjct:   192 SYASLIM-P-QGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQSQG-S 247

Query:   240 ASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAI 299
              S  N P     P   YY                P+E +             P RPGQ  
Sbjct:   248 FSGYN-PGS-SVPLGGYYAL--------------PRENV------------FPERPGQPE 279

Query:   300 CSNYSMYGICKFGPTCRFDHP 320
             C  Y   G CKFG  C+F HP
Sbjct:   280 CQFYMKTGDCKFGTVCKFHHP 300

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 105/309 (33%), Positives = 157/309 (50%)

Query:    35 GGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREE------LPE 88
             GG   +A  +P R G+P C  + RTG C +G++C+++HP     G             P 
Sbjct:    85 GGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPL 144

Query:    89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCP--YYMRT 146
             R G+ +C Y+++TG CK+GSTC+YHHP       P          +Q   + P  Y    
Sbjct:   145 RPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQ------QQQQQLSAGPTMYPSLQ 198

Query:   147 GSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNI 206
                +PSS  QY   L    L    Y+    Q    Y  +++ P  G+VP  GWN Y  ++
Sbjct:   199 SQTVPSSQ-QYGVVLARPQLLPGSYV----QSPYGYGQMVLPP--GMVPYSGWNPYQASV 251

Query:   207 GPL-SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN 259
               + SP +    G++ +Y     S +     +G     +S   Q  P+RP+QP+C+Y+M 
Sbjct:   252 SAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMR 311

Query:   260 TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
             TG CK+G  C+FHHP E  A   AS +  +GLP RPG   C++++ +GICKFGP C+FDH
Sbjct:   312 TGDCKFGTSCRFHHPMEA-ASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370

Query:   320 PYAGYPINY 328
                   ++Y
Sbjct:   371 SLGSSSLSY 379

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 106/299 (35%), Positives = 153/299 (51%)

Query:    36 GGV-AQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREE------LPE 88
             GGV  +A   P R G P C  + RTG C +G++C+++HP     G             P 
Sbjct:    88 GGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPL 147

Query:    89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGS 148
             R G+ +C YYL+TG CK+G TC+++HP      GP        P  Q +    Y      
Sbjct:   148 RPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQ 207

Query:   149 FLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP 208
              +PSS  QY   L   S     YL S       Y P +V P  G+VP  GWN Y  ++  
Sbjct:   208 SIPSSQ-QYGLVLTRPSFLTGSYLQS------PYGPPMVLPP-GMVPYSGWNPYQASLSA 259

Query:   209 L-SPTS--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNT 260
             + SP +    GS+ IY     S       G    +   +++S+  P+RPDQP+C+Y+M T
Sbjct:   260 MPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRT 319

Query:   261 GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
             G CK+G+ C++HHP + +       +  +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct:   320 GDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 105/299 (35%), Positives = 151/299 (50%)

Query:    44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY-AAQGAQYREELPERNGQPDCGYYLKTG 102
             YP RPGEPDC +Y +T  C YGS C+FNHP   AA   + ++ LPER  +P C +Y+KTG
Sbjct:   222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTG 281

Query:   103 TCKYGSTCKYHHPKD---RNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSS-GLQY- 157
              CK+G +CK+HHPKD    + +  +  ++ GL    D  + P+   T +   +S GL   
Sbjct:   282 KCKFGLSCKFHHPKDIQLPSSSQDIGSSV-GLTSEPDATNNPHVTFTPALYHNSKGLPVR 340

Query:   158 AGS------LPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP 211
             +G       L T S +             +++P     +  +V +   NT   N+G ++P
Sbjct:   341 SGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSS---NTANLNLGLVTP 397

Query:   212 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 271
              +       Y +  Q  LG      ++SA+    P+RP Q +C YYM TG CK+G  CKF
Sbjct:   398 ATS-----FYQTLTQPTLG------VISAT---YPQRPGQSECDYYMKTGECKFGERCKF 443

Query:   272 HHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323
             HHP +R++       Q     +   G P R G   C  Y   G CK+G TC+FDHP  G
Sbjct:   444 HHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPG 502

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 98/279 (35%), Positives = 134/279 (48%)

Query:    52 DCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGT--CKY--- 106
             DC +Y RTG C YG  CRFNH      G       PE N     G  L+ G   C Y   
Sbjct:   163 DCKYYFRTGGCKYGETCRFNH-TIPKSGLA---SAPELNF---LGLPLRPGEVECPYYMR 215

Query:   107 GSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSL 166
               +CKY      N   P +      P  +        +  G+F P +  Q   S  +WS 
Sbjct:   216 NGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNG----VSIGTFSPKATFQ--ASSTSWSS 269

Query:   167 QRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-PGWNTYMGNI-----GPLSPTSIAGSNLI 220
              R       + GT  ++P+++S + G+    P WN Y  ++     G  SP++   + L+
Sbjct:   270 PR------HVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSPST---TYLM 320

Query:   221 YSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ 280
              +S  +  +      H + A  +  PERPDQP+C YYM TG CK+  +CK+HHPK R+ +
Sbjct:   321 NNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPK 378

Query:   281 SAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
                  +   GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct:   379 LPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.5e-21, P = 3.5e-21
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query:   241 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 300
             S +  PERP +P+C YY+ TG C    +CK+HHPK          +   GLP RPGQAIC
Sbjct:     2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61

Query:   301 SNYSMYGICKFGPTCRFDH 319
              +YS +GIC+ GPTC+FDH
Sbjct:    62 PHYSRFGICRSGPTCKFDH 80

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-990806-20 cth1 "cth1" [Danio rerio (taxid:7955)]

 Score = 116 (45.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 37/136 (27%), Positives = 48/136 (35%)

Query:   235 MHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPS- 293
             +H L       P R + P CR +   G C +G  C F H +       A        PS 
Sbjct:   121 VHNLKEQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQ 179

Query:   294 ----RPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAIS 349
                 +P  A+C  +S +G C +G  CRF H   G P                  N  +IS
Sbjct:   180 SQEWKPRGALCRTFSAFGFCLYGTRCRFQH---GLPNTIKGHNANHTSWPQQMTNGGSIS 236

Query:   350 ATHSIETSPDASSKIP 365
                   TSP   S  P
Sbjct:   237 PISDTCTSPSPPSSSP 252

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AD9	C3H3_ARATH	3, ., 1, ., -, ., -	0.4590	0.8629	0.8886	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIV3517 hypothetical protein (446 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-08
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	5e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	9e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	2e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.002
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.003

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 249 PDQPDCRYYMNTGTCKYGADCKFHHPK 275
                CR++  TGTCKYG  CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 91  GQPDCGYYLKTGTCKYGSTCKYHHPK 116
               C ++ +TGTCKYG  CK+ H +
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 295 PGQAICSNYSMYGICKFGPTCRFDHP 320
               +C  +S  G CK+G  C+F H 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73
               C F+ RTG C YG  C+F H 
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 251 QPDCRYYMNTGTCKYGADCKFHHPK 275
              C+++   G C  G  CKF HP 
Sbjct: 4   TELCKFFK-RGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 89  RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
           +     C ++ K G C  G  CK+ HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 294 RPGQAICSNYSMYGICKFGPTCRFDHPY 321
           +    +C  +   G C  G  C+F HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 47 RPGEPDCLFYRRTGLCGYGSNCRFNHP 73
          +     C F++R G C  G  C+F HP
Sbjct: 1  KYKTELCKFFKR-GYCPRGDRCKFAHP 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.81
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.61
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.37
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	99.05
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.02
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.97
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.74
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.7
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.48
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.29
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.24
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.19
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.05
smart00356	27	ZnF_C3H1 zinc finger.	97.78
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.74
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.67
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.67
smart00356	27	ZnF_C3H1 zinc finger.	97.57
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.56
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.5
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.47
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.28
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.17
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.16
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	96.97
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.69
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	96.12
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.69
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.66
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.44
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.42
COG5152	259	Uncharacterized conserved protein, contains RING a	94.81
COG5152	259	Uncharacterized conserved protein, contains RING a	93.97
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	91.4
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	91.21
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	91.18
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	89.76
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	89.49
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	88.52

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.81  E-value=2.3e-19  Score=179.00  Aligned_cols=237  Identities=35%  Similarity=0.628  Sum_probs=152.3

Q ss_pred             CCCCCCCCCCcccchhhccCCCCCCCCCCCCCcc-hhcccc---cccccCCCCCCCccccccccccccCC-CCCCCCCCC
Q 014918           41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAAQGA---QYREELPERNGQPDCGYYLKTGTCKY-GSTCKYHHP  115 (416)
Q Consensus        41 ~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~-~~~~~t---~~~~~~per~~~~~Ck~flktG~Cky-G~~CrF~Hp  115 (416)
                      ...|+++++..+|.+|.+.+.|.++..|+|+|+. +.....   ......+++.+++.|++|.++|.|+| |++|+|+|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~  156 (332)
T KOG1677|consen   77 SSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHG  156 (332)
T ss_pred             cCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCC
Confidence            3469999998999999999999999999999996 433222   35567899999999999999999999 999999999


Q ss_pred             CCCCCCCCcccccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCc-ccC-------CCCCCCCccc
Q 014918          116 KDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSS-RLQ-------GTQSYMPLIV  187 (416)
Q Consensus       116 ~~~~~~~~v~~n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~-~~q-------~p~~y~P~~~  187 (416)
                      .+..... ..++..+++.+.++++|.+|++||.|.       .|..|.|.|+..--.+. .+.       .++.|.....
T Consensus       157 ~~e~r~~-~~~~~~~~~~~~kt~lC~~f~~tG~C~-------yG~rC~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (332)
T KOG1677|consen  157 LEELRLP-SSENQVGNPPKYKTKLCPKFQKTGLCK-------YGSRCRFIHGEPEDRASNRHPYPVSRNPQPQSYGLTAS  228 (332)
T ss_pred             ccccccc-ccchhhcCCCCCCCcCCCccccCCCCC-------CCCcCeecCCCccccccccCCccccccccccccchhhc
Confidence            9876532 257889999999999999999999996       36667776664321110 000       0122211111


Q ss_pred             CC-----CCCccCCCCCCCCCc-cCCCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccC
Q 014918          188 SP-----SQGIVPAPGWNTYMG-NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTG  261 (416)
Q Consensus       188 ~p-----sqg~vp~~gw~~y~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG  261 (416)
                      .+     ...+--.-.|.. .. .+-|..+..............   .....  .......+.+++++.+++|++ +++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~p~~~~~~~-~~~~  301 (332)
T KOG1677|consen  229 RSSLLNQQSKLQQPFAPSG-LSESVLPRSSQQNLLPQGLRSSSS---SHPSG--SQENVNENGFRARPEQPECRS-MKSG  301 (332)
T ss_pred             chhhccccccccccccccc-cccccCcCCccccccccccccccc---ccccc--chhccccccCcCCCCCCccch-hccc
Confidence            10     000000000100 00 000100000000000000000   00000  111225778999999999999 9999


Q ss_pred             CCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCC
Q 014918          262 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRF  317 (416)
Q Consensus       262 ~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF  317 (416)
                                   .+.        +    +++|++...|..|.++|+|+||..|+|
T Consensus       302 -------------~~~--------l----~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (332)
T KOG1677|consen  302 -------------ENR--------L----LPLRPGPGACTLFSRYGSCKFGPLCKF  332 (332)
T ss_pred             -------------ccc--------c----cCCCCCcccccccccccccCCCCcCCC
Confidence                         111        1    688999999999999999999999987

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.61  E-value=7.8e-16  Score=153.72  Aligned_cols=80  Identities=34%  Similarity=0.764  Sum_probs=69.1

Q ss_pred             CCCCCCCCcccccccccCCCCC-CCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCC
Q 014918          244 NLPERPDQPDCRYYMNTGTCKY-GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  322 (416)
Q Consensus       244 ~~Perpkq~~Cr~y~ktG~Ck~-G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~  322 (416)
                      ..|++.++++|++|+++|.|+| |++|+|+|..+++....  .++.++++.++++++|.+|+++|.|+||.+|+|.|+..
T Consensus       125 ~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~  202 (332)
T KOG1677|consen  125 RKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP  202 (332)
T ss_pred             cCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence            4567789999999999999999 99999999998876432  23456789999999999999999999999999999987


Q ss_pred             CCC
Q 014918          323 GYP  325 (416)
Q Consensus       323 ~~~  325 (416)
                      ...
T Consensus       203 ~~~  205 (332)
T KOG1677|consen  203 EDR  205 (332)
T ss_pred             ccc
Confidence            543

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.37  E-value=7.5e-13  Score=133.02  Aligned_cols=144  Identities=29%  Similarity=0.711  Sum_probs=112.3

Q ss_pred             CCCCCcccchhhcc-CCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCc
Q 014918           46 ARPGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV  124 (416)
Q Consensus        46 ~Rpg~~~Cryylrt-G~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v  124 (416)
                      ++.+...|.++.+. -.|..|..|.+.|....           ...++.+|+||++ |.|+.|+.|.|.|..+..     
T Consensus        41 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~-----  103 (325)
T KOG1040|consen   41 DESGRATCEFNESREKPCERGPICPKSHNDVS-----------DSRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT-----  103 (325)
T ss_pred             cccccchhcccccCCCCccCCCCCccccCCcc-----------ccCCceeehhhhh-hhhhccCcCcchhhhhhc-----
Confidence            44556789988632 46999999999998642           0124578999999 999999999999998533     


Q ss_pred             ccccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCc
Q 014918          125 SFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG  204 (416)
Q Consensus       125 ~~n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~  204 (416)
                                 .+++|.||..+|.|.+....              +|++..             |               
T Consensus       104 -----------k~rec~ff~~~g~c~~~~~c--------------~y~h~d-------------p---------------  130 (325)
T KOG1040|consen  104 -----------KMRECKFFSLFGECTNGKDC--------------PYLHGD-------------P---------------  130 (325)
T ss_pred             -----------ccccccccccccccccccCC--------------cccCCC-------------h---------------
Confidence                       37899999999999753222              232210             0               


Q ss_pred             cCCCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccCCCCCCCCCCCCCchhhhhccccc
Q 014918          205 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS  284 (416)
Q Consensus       205 ~~~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~  284 (416)
                                                   |              .+..+|.+|.+ |+|+-|+.|++.|..         
T Consensus       131 -----------------------------q--------------t~~k~c~~~~~-g~c~~g~~c~~~h~~---------  157 (325)
T KOG1040|consen  131 -----------------------------Q--------------TAIKKCKWYKE-GFCRGGPSCKKRHER---------  157 (325)
T ss_pred             -----------------------------h--------------hhhhccchhhh-ccCCCcchhhhhhhc---------
Confidence                                         0              14568999999 999999999999953         


Q ss_pred             cCCCCCCCCCCCCccCcccccccccCCCCC-CCCCCCCCCCC
Q 014918          285 NIGPLGLPSRPGQAICSNYSMYGICKFGPT-CRFDHPYAGYP  325 (416)
Q Consensus       285 ~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~-CkF~Hp~~~~~  325 (416)
                                  ..+|..|.. |+|.-|.. |.+.|+...++
T Consensus       158 ------------~~~c~~y~~-gfC~~g~q~c~~~hp~~~~~  186 (325)
T KOG1040|consen  158 ------------KVLCPPYNA-GFCPKGPQRCDMLHPEFQQP  186 (325)
T ss_pred             ------------ccCCCchhh-hhccCCCCcccccCCCCCCC
Confidence                        369999999 99999998 99999998765

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=99.05  E-value=2.4e-10  Score=113.82  Aligned_cols=60  Identities=30%  Similarity=0.572  Sum_probs=46.9

Q ss_pred             CCcccchhhccCCCCCCCC-CCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014918           49 GEPDCLFYRRTGLCGYGSN-CRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN  119 (416)
Q Consensus        49 g~~~CryylrtG~C~~G~~-C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~  119 (416)
                      ..++||.|+| |.|..|++ |||+|+....+..  .+      .-..|..|++ |.|. .++|||.|+....
T Consensus        36 ~~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~--~g------~v~aC~Ds~k-grCs-R~nCkylHpp~hl   96 (331)
T KOG2494|consen   36 TLEVCREFLR-NTCSRGDRECKFAHPPKNCQVS--NG------RVIACFDSQK-GRCS-RENCKYLHPPQHL   96 (331)
T ss_pred             HHHHHHHHHh-ccccCCCccccccCCCCCCCcc--CC------eEEEEecccc-CccC-cccceecCCChhh
Confidence            3689999998 99999999 9999996533211  11      1246999999 9998 5789999997654

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.02  E-value=1.7e-10  Score=110.29  Aligned_cols=132  Identities=30%  Similarity=0.752  Sum_probs=103.8

Q ss_pred             CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 014918           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF  126 (416)
Q Consensus        47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~  126 (416)
                      .|....||||..+|.|..|..|+|.|...++               .+|..|+. |.|...+.|...|..+..       
T Consensus       203 spsavycryynangicgkgaacrfvheptrk---------------ticpkfln-grcnkaedcnlsheldpr-------  259 (377)
T KOG1492|consen  203 SPSAVYCRYYNANGICGKGAACRFVHEPTRK---------------TICPKFLN-GRCNKAEDCNLSHELDPR-------  259 (377)
T ss_pred             CCceeEEEEecCCCcccCCceeeeecccccc---------------ccChHHhc-CccCchhcCCcccccCcc-------
Confidence            3567899999999999999999999985542               46999998 999999999999997633       


Q ss_pred             ccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCccC
Q 014918          127 NILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNI  206 (416)
Q Consensus       127 n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~~~  206 (416)
                               +.+.|.||.- |.|..               |...|++           +                     
T Consensus       260 ---------ripacryfll-gkcnn---------------pncryvh-----------i---------------------  282 (377)
T KOG1492|consen  260 ---------RIPACRYFLL-GKCNN---------------PNCRYVH-----------I---------------------  282 (377)
T ss_pred             ---------ccchhhhhhh-ccCCC---------------CCceEEE-----------E---------------------
Confidence                     2678988863 66642               1112222           0                     


Q ss_pred             CCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccCCCCCCCCCCCCCchhhhhccccccC
Q 014918          207 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI  286 (416)
Q Consensus       207 ~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l  286 (416)
                                                           .|.|  ..++|--|.+.|+|..|.+|+-.|.            
T Consensus       283 -------------------------------------hyse--napicfefakygfcelgtscknqhi------------  311 (377)
T KOG1492|consen  283 -------------------------------------HYSE--NAPICFEFAKYGFCELGTSCKNQHI------------  311 (377)
T ss_pred             -------------------------------------eecC--CCceeeeehhcceecccccccccee------------
Confidence                                                 1111  5688999999999999999999993            


Q ss_pred             CCCCCCCCCCCccCcccccccccCCCCCCCCCCCC
Q 014918          287 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY  321 (416)
Q Consensus       287 ~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~  321 (416)
                                 ..|..|..+|.|- .+.|.+.|..
T Consensus       312 -----------lqctdyamfgscn-npqcslyhga  334 (377)
T KOG1492|consen  312 -----------LQCTDYAMFGSCN-NPQCSLYHGA  334 (377)
T ss_pred             -----------eeecchhhhcCCC-CCcceeecce
Confidence                       4799999999998 6799999974

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.97  E-value=5.8e-10  Score=112.34  Aligned_cols=153  Identities=22%  Similarity=0.344  Sum_probs=110.8

Q ss_pred             CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 014918           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF  126 (416)
Q Consensus        47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~  126 (416)
                      ..++++|+||+| |.|+.|+.|.|.|..+..             +.+.|.||..+|.|..|..|-|.|.....       
T Consensus        74 ~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~-------------k~rec~ff~~~g~c~~~~~c~y~h~dpqt-------  132 (325)
T KOG1040|consen   74 SRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT-------------KMRECKFFSLFGECTNGKDCPYLHGDPQT-------  132 (325)
T ss_pred             cCCceeehhhhh-hhhhccCcCcchhhhhhc-------------ccccccccccccccccccCCcccCCChhh-------
Confidence            567899999996 999999999999997543             23579999999999999999999998532       


Q ss_pred             ccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCccC
Q 014918          127 NILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNI  206 (416)
Q Consensus       127 n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~~~  206 (416)
                               ..++|.+|.+ |.|-.       +..++                                           
T Consensus       133 ---------~~k~c~~~~~-g~c~~-------g~~c~-------------------------------------------  152 (325)
T KOG1040|consen  133 ---------AIKKCKWYKE-GFCRG-------GPSCK-------------------------------------------  152 (325)
T ss_pred             ---------hhhccchhhh-ccCCC-------cchhh-------------------------------------------
Confidence                     2578988865 55521       00110                                           


Q ss_pred             CCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccCCCCCCCC-CCCCCchhhhhcccccc
Q 014918          207 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSAASN  285 (416)
Q Consensus       207 ~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG~Ck~G~~-CrF~H~~d~~~~~~~~~  285 (416)
                                                            +-+. ..++|..|+. |+|.-|.+ |.+.|+.........  
T Consensus       153 --------------------------------------~~h~-~~~~c~~y~~-gfC~~g~q~c~~~hp~~~~~~~~~--  190 (325)
T KOG1040|consen  153 --------------------------------------KRHE-RKVLCPPYNA-GFCPKGPQRCDMLHPEFQQPPFHQ--  190 (325)
T ss_pred             --------------------------------------hhhh-cccCCCchhh-hhccCCCCcccccCCCCCCChhhc--
Confidence                                                  0001 2278999998 99999998 999997654433211  


Q ss_pred             CCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          286 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       286 l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      +.....+.+.+..++..|.. ..+.....|.+.+....
T Consensus       191 ~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~  227 (325)
T KOG1040|consen  191 GSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHE  227 (325)
T ss_pred             cccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHH
Confidence            12223456777788888888 88888888888877543

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.74  E-value=2.6e-08  Score=98.64  Aligned_cols=64  Identities=27%  Similarity=0.621  Sum_probs=53.6

Q ss_pred             cccccccccCCCCC---CCCCCCC---CchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          252 PDCRYYMNTGTCKY---GADCKFH---HPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       252 ~~Cr~y~ktG~Ck~---G~~CrF~---H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      .+|.-|...|.|++   |+.|.|+   |....+...        +.-.-+++++|..|.+-|+|+||.+|.|.|.-..
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k--------~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~  300 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK--------KKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS  300 (351)
T ss_pred             HHhhccCcCCCCcccccccccccccccccccccccc--------ccccccccCCccchhhcccCccccccccccCChh
Confidence            78999999999999   9999999   986554432        2234467899999999999999999999998664

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.70  E-value=1.4e-07  Score=93.61  Aligned_cols=151  Identities=25%  Similarity=0.504  Sum_probs=108.7

Q ss_pred             CCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccccc
Q 014918           49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNI  128 (416)
Q Consensus        49 g~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~n~  128 (416)
                      .+..|.+|+..+.+.....|.+.|.....            ....+|++|++ |.|+.|..|.|.|..+...        
T Consensus        73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~------------~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~--------  131 (285)
T COG5084          73 NTVACISRNFNSIRGSRLSTPNNHVNPVL------------SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRS--------  131 (285)
T ss_pred             cccccccccccCCccccccCCccccCccc------------cCCcccchhcc-ccCcCCCccccccCCCccc--------
Confidence            46789999976777777799999975331            12357999999 9999999999999987542        


Q ss_pred             CCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCccCCC
Q 014918          129 LGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP  208 (416)
Q Consensus       129 ~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~~~~p  208 (416)
                            ..+.+|.||...|+|.....++|...+                           |      .            
T Consensus       132 ------s~~~~c~~Fs~~G~cs~g~~c~~~h~d---------------------------p------~------------  160 (285)
T COG5084         132 ------SQGPPCRSFSLKGSCSSGPSCGYSHID---------------------------P------D------------  160 (285)
T ss_pred             ------ccCCCcccccccceeccCCCCCccccC---------------------------c------c------------
Confidence                  236899999988998643222221000                           0      0            


Q ss_pred             CCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccc--cCCCCCCCCCCCCCchhhhhccccccC
Q 014918          209 LSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN--TGTCKYGADCKFHHPKERIAQSAASNI  286 (416)
Q Consensus       209 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~k--tG~Ck~G~~CrF~H~~d~~~~~~~~~l  286 (416)
                                                              .....|.+|.+  .|+|.+|..|+|.|....+.       
T Consensus       161 ----------------------------------------~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~-------  193 (285)
T COG5084         161 ----------------------------------------SFAGNCDQYSGATYGFCPLGASCKFSHTLKRVS-------  193 (285)
T ss_pred             ----------------------------------------cccccccccCcccccccCCCCcccccccccccc-------
Confidence                                                    02245777774  69999999999999654321       


Q ss_pred             CCCCCCCCCCCccCcccccccccCCCCC--------------CCCCCCCCCCCCC
Q 014918          287 GPLGLPSRPGQAICSNYSMYGICKFGPT--------------CRFDHPYAGYPIN  327 (416)
Q Consensus       287 ~~~g~P~rp~~~~C~~y~~~G~CkfG~~--------------CkF~Hp~~~~~~~  327 (416)
                              ....+|..|+. ++|+-|..              |++.||.......
T Consensus       194 --------~~~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~~~iq  239 (285)
T COG5084         194 --------YGSSPCGNYTP-PFSPPGTPSESVSSWGYGKGTSCSLSHPSLNIDIQ  239 (285)
T ss_pred             --------ccccccccCcC-CcCCCCCCccccccccccccccccCCCccccCCcC
Confidence                    12338999999 99998988              9999998876543

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.48  E-value=3.6e-08  Score=64.78  Aligned_cols=27  Identities=41%  Similarity=1.038  Sum_probs=21.8

Q ss_pred             CCCcccccccccCCCCCCCCCCCCCch
Q 014918          249 PDQPDCRYYMNTGTCKYGADCKFHHPK  275 (416)
Q Consensus       249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~~  275 (416)
                      +++++|++|+++|.|+||++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            478999999999999999999999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.29  E-value=2.3e-07  Score=60.96  Aligned_cols=26  Identities=42%  Similarity=0.942  Sum_probs=21.1

Q ss_pred             CCCcccchhhccCCCCCCCCCCCCCc
Q 014918           48 PGEPDCLFYRRTGLCGYGSNCRFNHP   73 (416)
Q Consensus        48 pg~~~CryylrtG~C~~G~~C~F~H~   73 (416)
                      +++++|++|+++|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            35789999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.24  E-value=7e-07  Score=85.78  Aligned_cols=55  Identities=29%  Similarity=0.863  Sum_probs=45.3

Q ss_pred             CCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      ..+.||||+- |.|.. ..|||.|....                 ....+|..|.++|||..|..|+-.|-..-
T Consensus       260 ripacryfll-gkcnn-pncryvhihys-----------------enapicfefakygfcelgtscknqhilqc  314 (377)
T KOG1492|consen  260 RIPACRYFLL-GKCNN-PNCRYVHIHYS-----------------ENAPICFEFAKYGFCELGTSCKNQHILQC  314 (377)
T ss_pred             ccchhhhhhh-ccCCC-CCceEEEEeec-----------------CCCceeeeehhcceeccccccccceeeee
Confidence            5678999998 99975 67999995321                 12569999999999999999999998654

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.19  E-value=1.5e-06  Score=86.35  Aligned_cols=64  Identities=28%  Similarity=0.630  Sum_probs=51.5

Q ss_pred             cccchhhccCCCCC---CCCCCCC---CcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014918           51 PDCLFYRRTGLCGY---GSNCRFN---HPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (416)
Q Consensus        51 ~~CryylrtG~C~~---G~~C~F~---H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~  118 (416)
                      .+|.-|.+.|.|.+   |+.|.|+   |.........    .-...++..|+.|.+.|+|.||.+|.|.|..+.
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~----k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~  300 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK----KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS  300 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccc----cccccccCCccchhhcccCccccccccccCChh
Confidence            79999999999999   9999999   9855332111    112345678999999999999999999999764

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.05  E-value=2e-06  Score=86.17  Aligned_cols=58  Identities=29%  Similarity=0.638  Sum_probs=45.8

Q ss_pred             CcccccccccCCCCCCCC-CCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          251 QPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       251 q~~Cr~y~ktG~Ck~G~~-CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      -++||-|++ |.|+.|+. |||.|+........            -+-..|..|++ |.|. -++|||.|+...
T Consensus        37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~~------------g~v~aC~Ds~k-grCs-R~nCkylHpp~h   95 (331)
T KOG2494|consen   37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQVSN------------GRVIACFDSQK-GRCS-RENCKYLHPPQH   95 (331)
T ss_pred             HHHHHHHHh-ccccCCCccccccCCCCCCCccC------------CeEEEEecccc-CccC-cccceecCCChh
Confidence            479999999 99999998 99999865322111            12357999999 9999 568999999643

>smart00356 ZnF_C3H1 zinc finger

Probab=97.78  E-value=1.5e-05  Score=51.29  Aligned_cols=25  Identities=40%  Similarity=1.089  Sum_probs=21.9

Q ss_pred             CCCcccccccccCCCCCCCCCCCCCc
Q 014918          249 PDQPDCRYYMNTGTCKYGADCKFHHP  274 (416)
Q Consensus       249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~  274 (416)
                      .++.+|++| ++|.|++|++|+|+|.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            367799999 5599999999999995

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.74  E-value=1.5e-05  Score=83.79  Aligned_cols=62  Identities=27%  Similarity=0.687  Sum_probs=52.5

Q ss_pred             CCccccccccc--CCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCC
Q 014918          250 DQPDCRYYMNT--GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY  321 (416)
Q Consensus       250 kq~~Cr~y~kt--G~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~  321 (416)
                      ...+|.-..++  -.|.||++|||.|+.+........+|.          ..|++|...|+|+||-.|||.-..
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig----------~~Cp~f~s~G~Cp~G~~CRFl~aH  138 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG----------PSCPVFESLGFCPYGFKCRFLGAH  138 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC----------CccceeeccccCCccceeehhhcc
Confidence            45789999995  489999999999999988776665664          489999999999999999996443

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=3.5e-05  Score=80.65  Aligned_cols=82  Identities=22%  Similarity=0.493  Sum_probs=58.2

Q ss_pred             cccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCcccccCC
Q 014918           51 PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG  130 (416)
Q Consensus        51 ~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~n~~g  130 (416)
                      .+|.||+ ...|++++.|.|+|......            ...+|.+|+..-.|+.  -|+|.|.+-...          
T Consensus         4 ~dcyff~-ys~cKk~d~c~~rh~E~al~------------n~t~C~~w~~~~~C~k--~C~YRHSe~~~k----------   58 (667)
T KOG4791|consen    4 EDCYFFF-YSTCKKGDSCPFRHCEAALG------------NETVCTLWQEGRCCRK--VCRYRHSEIDKK----------   58 (667)
T ss_pred             ccchhhh-hhhhhccCcCcchhhHHHhc------------CcchhhhhhhcCcccc--cccchhhHHhhh----------
Confidence            5799998 59999999999999966532            2357999999556664  999999975331          


Q ss_pred             CCCCCCCCCccccccccc-ccCCCCCCCCCCCCccccCCCC
Q 014918          131 LPMRQDEKSCPYYMRTGS-FLPSSGLQYAGSLPTWSLQRAP  170 (416)
Q Consensus       131 lP~R~~e~eC~fY~ktG~-~~~~~~~~~~~~~~~~~~pr~~  170 (416)
                          ..+-.|.|..+ |. |..        .-|.|.|-+||
T Consensus        59 ----r~e~~CYwe~~-p~gC~k--------~~CgfRH~~pP   86 (667)
T KOG4791|consen   59 ----RSEIPCYWENQ-PTGCQK--------LNCGFRHNRPP   86 (667)
T ss_pred             ----cCcccceeecC-CCccCC--------CccccccCCCc
Confidence                13567766554 33 542        35677776655

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.67  E-value=2.2e-05  Score=82.60  Aligned_cols=62  Identities=27%  Similarity=0.618  Sum_probs=50.0

Q ss_pred             CCcccchhhcc--CCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014918           49 GEPDCLFYRRT--GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPK  116 (416)
Q Consensus        49 g~~~Cryylrt--G~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~  116 (416)
                      ...+|.-..+.  -.|.||++|+|.||.+....++     ++..+ +.|.+|...|.|.||-+|||.-..
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK-----~~Dig-~~Cp~f~s~G~Cp~G~~CRFl~aH  138 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK-----APDIG-PSCPVFESLGFCPYGFKCRFLGAH  138 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhcc-----CcccC-CccceeeccccCCccceeehhhcc
Confidence            46899999975  3799999999999998765542     22333 679999999999999999997543

>smart00356 ZnF_C3H1 zinc finger

Probab=97.57  E-value=4.9e-05  Score=48.85  Aligned_cols=25  Identities=32%  Similarity=1.008  Sum_probs=21.6

Q ss_pred             CCccCcccccccccCCCCCCCCCCCC
Q 014918          296 GQAICSNYSMYGICKFGPTCRFDHPY  321 (416)
Q Consensus       296 ~~~~C~~y~~~G~CkfG~~CkF~Hp~  321 (416)
                      ++.+|++|+ +|.|++|++|+|.|..
T Consensus         3 k~~~C~~~~-~g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFFK-RGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCcc-CCCCCCCCCcCCCCcC
Confidence            467999994 4999999999999973

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=4.4e-05  Score=79.91  Aligned_cols=52  Identities=17%  Similarity=0.455  Sum_probs=39.2

Q ss_pred             cccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccc-cCCCCCCCCCCCCC
Q 014918          252 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGI-CKFGPTCRFDHPYA  322 (416)
Q Consensus       252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~-CkfG~~CkF~Hp~~  322 (416)
                      .+|++|+..-.|+.  .|+|.|..-...               .....|-|+.+ |. |. -++|-|.|..+
T Consensus        33 t~C~~w~~~~~C~k--~C~YRHSe~~~k---------------r~e~~CYwe~~-p~gC~-k~~CgfRH~~p   85 (667)
T KOG4791|consen   33 TVCTLWQEGRCCRK--VCRYRHSEIDKK---------------RSEIPCYWENQ-PTGCQ-KLNCGFRHNRP   85 (667)
T ss_pred             chhhhhhhcCcccc--cccchhhHHhhh---------------cCcccceeecC-CCccC-CCccccccCCC
Confidence            36999998567776  899999654332               12578999999 66 98 67999999543

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.50  E-value=0.00025  Score=70.72  Aligned_cols=59  Identities=31%  Similarity=0.684  Sum_probs=48.9

Q ss_pred             CCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014918           48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (416)
Q Consensus        48 pg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~  118 (416)
                      ...++|++|++ |.|+.|..|.|.|..+....           -.+.|++|-..|.|..|..|.|.|..+.
T Consensus       102 ~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s-----------~~~~c~~Fs~~G~cs~g~~c~~~h~dp~  160 (285)
T COG5084         102 SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS-----------QGPPCRSFSLKGSCSSGPSCGYSHIDPD  160 (285)
T ss_pred             cCCcccchhcc-ccCcCCCccccccCCCcccc-----------cCCCcccccccceeccCCCCCccccCcc
Confidence            45789999995 99999999999999875421           1356999966699999999999999743

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.47  E-value=4e-05  Score=76.09  Aligned_cols=78  Identities=24%  Similarity=0.625  Sum_probs=53.0

Q ss_pred             CCCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCC-----------------------CCCccccc
Q 014918           41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPER-----------------------NGQPDCGY   97 (416)
Q Consensus        41 ~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per-----------------------~~~~~Ck~   97 (416)
                      ..+--..|...+|.||. .|.|..|+.|+|+|+........-..-|+..                       ....+|+|
T Consensus        83 kv~~gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKf  161 (343)
T KOG1763|consen   83 KVPKGVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKF  161 (343)
T ss_pred             ccccCCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHH
Confidence            34455678899999998 6999999999999996533221100111111                       12248999


Q ss_pred             ccc------cc---ccCCCC-CCCCCCCCCCC
Q 014918           98 YLK------TG---TCKYGS-TCKYHHPKDRN  119 (416)
Q Consensus        98 flk------tG---~CkyG~-~CrF~Hp~~~~  119 (416)
                      |+-      +|   .|.+|. .|-|.|..+.+
T Consensus       162 FLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~G  193 (343)
T KOG1763|consen  162 FLEAVENGKYGWFWECPNGGDKCIYRHALPEG  193 (343)
T ss_pred             HHHHHhcCCccceeECCCCCCeeeeeecCCcc
Confidence            974      23   399985 99999987754

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.28  E-value=7e-05  Score=74.40  Aligned_cols=80  Identities=26%  Similarity=0.603  Sum_probs=54.2

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCCchhhhhccccccC-------------------CCCCCCCCCCCccCccccc---
Q 014918          248 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI-------------------GPLGLPSRPGQAICSNYSM---  305 (416)
Q Consensus       248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l-------------------~~~g~P~rp~~~~C~~y~~---  305 (416)
                      -|+..+|-||.. |.|..|+.|+|+|+....+...-.+|                   +--|-|..-...+|.||+.   
T Consensus        89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE  167 (343)
T KOG1763|consen   89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE  167 (343)
T ss_pred             CchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence            478899999999 99999999999998765443221111                   0012222223458999974   


Q ss_pred             ---ccc---cCCCC-CCCCCCCCCCCCCCCCCC
Q 014918          306 ---YGI---CKFGP-TCRFDHPYAGYPINYGLS  331 (416)
Q Consensus       306 ---~G~---CkfG~-~CkF~Hp~~~~~~~~~~s  331 (416)
                         ||+   |++|. .|.|.|-++   ++|-|.
T Consensus       168 ~~kYGWfW~CPnGg~~C~YrHaLP---~GyVLk  197 (343)
T KOG1763|consen  168 NGKYGWFWECPNGGDKCIYRHALP---EGYVLK  197 (343)
T ss_pred             cCCccceeECCCCCCeeeeeecCC---cchhhh
Confidence               453   99985 899999755   556543

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.17  E-value=0.00032  Score=74.61  Aligned_cols=52  Identities=25%  Similarity=0.546  Sum_probs=36.7

Q ss_pred             CCCCCCCCCCCCCcch-hcccccccccCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014918           60 GLCGYGSNCRFNHPAY-AAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPK  116 (416)
Q Consensus        60 G~C~~G~~C~F~H~~~-~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~  116 (416)
                      +.|.-+..|.|.|+-. .+....  ..|  .+.-..|.-|-+ |.|+.|+.|.|.|..
T Consensus       207 ~~shDwteCPf~HpgEkARRRDP--Rky--hYs~tpCPefrk-G~C~rGD~CEyaHgv  259 (528)
T KOG1595|consen  207 PRSHDWTECPFAHPGEKARRRDP--RKY--HYSSTPCPEFRK-GSCERGDSCEYAHGV  259 (528)
T ss_pred             ccCCCcccCCccCCCcccccCCc--ccc--cccCccCccccc-CCCCCCCccccccce
Confidence            4677888899999733 221100  011  123457999999 999999999999986

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.16  E-value=0.00017  Score=69.93  Aligned_cols=107  Identities=21%  Similarity=0.395  Sum_probs=67.1

Q ss_pred             hhhhhhhcccCCchhHHHHHHHhcccCCcCCCCccCCCCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhcccc----
Q 014918            5 RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA----   80 (416)
Q Consensus         5 ~~~~~~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t----   80 (416)
                      +|+.++++..+    +|....++-...+  .....+..+--+.|...+|..|+ .+.|..|+.|+|+|+......+    
T Consensus        46 kQie~~~~~~~----~e~~~k~~~e~KR--re~ekq~iragvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~D  118 (299)
T COG5252          46 KQIETLNLKEQ----LEKKEKMRMEEKR--REPEKQVIRAGVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPD  118 (299)
T ss_pred             HHHHhhcchhH----HHHHHHHHHHHhh--cchhhhhhccccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccc
Confidence            67888877444    4444433322211  11223444556778899999998 7999999999999995432211    


Q ss_pred             -----c-ccc--cCCCCCC---Cccccccccc------c---ccCCC-CCCCCCCCCCC
Q 014918           81 -----Q-YRE--ELPERNG---QPDCGYYLKT------G---TCKYG-STCKYHHPKDR  118 (416)
Q Consensus        81 -----~-~~~--~~per~~---~~~Ck~flkt------G---~CkyG-~~CrF~Hp~~~  118 (416)
                           + ..+  .+.+++.   ..+|+||+-.      |   .|.+| .+|-|.|..+.
T Consensus       119 LYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         119 LYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             hhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCCCCCceeeeeeccCc
Confidence                 1 111  2223332   3579998742      2   49998 69999998765

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=96.97  E-value=0.0012  Score=70.45  Aligned_cols=61  Identities=23%  Similarity=0.525  Sum_probs=50.4

Q ss_pred             CCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCCCC
Q 014918          250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  325 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~  325 (416)
                      .-+.|.-|.+ |.|+.||.|.|+|..-+.      -|    =|.++++..|+.-   |+|+- .-|-|+|....|.
T Consensus       235 s~tpCPefrk-G~C~rGD~CEyaHgvfEc------wL----HPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR  295 (528)
T KOG1595|consen  235 SSTPCPEFRK-GSCERGDSCEYAHGVFEC------WL----HPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR  295 (528)
T ss_pred             cCccCccccc-CCCCCCCccccccceehh------hc----CHHHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence            4578999999 999999999999975432      22    2678999999976   88997 8999999988763

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.69  E-value=0.00057  Score=66.29  Aligned_cols=79  Identities=32%  Similarity=0.658  Sum_probs=54.1

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCCchhhhhccccccC----------CCCC-CCCCCCCccCccccc------cc---
Q 014918          248 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI----------GPLG-LPSRPGQAICSNYSM------YG---  307 (416)
Q Consensus       248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l----------~~~g-~P~rp~~~~C~~y~~------~G---  307 (416)
                      -+++.+|-.|.. +.|-.|+.|+|+|.++..+...-.+|          -|++ .|.--...+|.||..      ||   
T Consensus        82 dpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W  160 (299)
T COG5252          82 DPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW  160 (299)
T ss_pred             CchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence            478999999998 99999999999999776654322111          1112 122223458999863      34   


Q ss_pred             ccCCC-CCCCCCCCCCCCCCCCCC
Q 014918          308 ICKFG-PTCRFDHPYAGYPINYGL  330 (416)
Q Consensus       308 ~CkfG-~~CkF~Hp~~~~~~~~~~  330 (416)
                      .|++| .+|-|.|-++   ++|-|
T Consensus       161 ~CPng~~~C~y~H~Lp---~GyVL  181 (299)
T COG5252         161 TCPNGNMRCSYIHKLP---DGYVL  181 (299)
T ss_pred             eCCCCCceeeeeeccC---cccee
Confidence            39998 6999999765   55543

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=96.12  E-value=0.014  Score=63.69  Aligned_cols=41  Identities=20%  Similarity=0.459  Sum_probs=27.3

Q ss_pred             CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014918           67 NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (416)
Q Consensus        67 ~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~  118 (416)
                      .|.+.|......       +-...-...|+||..   |. +..|.|.|+...
T Consensus       526 ~s~s~~s~~~~~-------ltk~k~l~~Cky~~~---Ct-~a~Ce~~HPtaa  566 (681)
T KOG3702|consen  526 DSLSRHSEKKNE-------LTKAKILTRCKYGPA---CT-SAECEFAHPTAA  566 (681)
T ss_pred             cchhhCcccccc-------cccceeeccccCCCc---CC-chhhhhcCCcch
Confidence            366777754321       111122357999988   88 899999999875

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.69  E-value=0.0045  Score=64.20  Aligned_cols=30  Identities=23%  Similarity=0.941  Sum_probs=25.4

Q ss_pred             CCCCCcccccccccCCCCCCCCCCCCCchhh
Q 014918          247 ERPDQPDCRYYMNTGTCKYGADCKFHHPKER  277 (416)
Q Consensus       247 erpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~  277 (416)
                      .-....+|.||+. |.|+||.+|||+|..+-
T Consensus       136 Th~sMkpC~ffLe-g~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  136 THESMKPCKFFLE-GRCRFGENCRFSHGLDV  165 (486)
T ss_pred             cchhhccchHhhc-cccccCcccccccCccc
Confidence            3346678999999 99999999999997653

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.66  E-value=0.0073  Score=36.67  Aligned_cols=19  Identities=37%  Similarity=0.819  Sum_probs=17.3

Q ss_pred             cCcccccccccCCCCCCCCCCC
Q 014918          299 ICSNYSMYGICKFGPTCRFDHP  320 (416)
Q Consensus       299 ~C~~y~~~G~CkfG~~CkF~Hp  320 (416)
                      +|+|+..   |++|+.|.|.||
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            5898888   999999999997

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.44  E-value=0.0094  Score=36.19  Aligned_cols=19  Identities=32%  Similarity=0.990  Sum_probs=16.8

Q ss_pred             cccccccccccCCCCCCCCCCC
Q 014918           94 DCGYYLKTGTCKYGSTCKYHHP  115 (416)
Q Consensus        94 ~Ck~flktG~CkyG~~CrF~Hp  115 (416)
                      .|+||..   |++|+.|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            3998876   999999999996

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.42  E-value=0.007  Score=62.82  Aligned_cols=33  Identities=33%  Similarity=0.764  Sum_probs=27.7

Q ss_pred             CCCCCCCCcccchhhccCCCCCCCCCCCCCcchh
Q 014918           43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYA   76 (416)
Q Consensus        43 ~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~   76 (416)
                      -+|.-..-..|.||+ .|.|+|+++|||+|....
T Consensus       133 l~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  133 LTPTHESMKPCKFFL-EGRCRFGENCRFSHGLDV  165 (486)
T ss_pred             ecCcchhhccchHhh-ccccccCcccccccCccc
Confidence            356666678999999 699999999999999664

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.81  E-value=0.01  Score=56.57  Aligned_cols=28  Identities=39%  Similarity=0.899  Sum_probs=25.2

Q ss_pred             cccccccccCCCCCCCCCCCCCchhhhh
Q 014918          252 PDCRYYMNTGTCKYGADCKFHHPKERIA  279 (416)
Q Consensus       252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~  279 (416)
                      .+|.-|..||+|-||++|+|+|.++...
T Consensus       142 dVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         142 DVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             ccccchhhcccccCCchhhhhhhhhhhh
Confidence            5899999999999999999999887543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.97  E-value=0.018  Score=54.91  Aligned_cols=27  Identities=37%  Similarity=0.874  Sum_probs=24.6

Q ss_pred             CccccccccccccCCCCCCCCCCCCCC
Q 014918           92 QPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (416)
Q Consensus        92 ~~~Ck~flktG~CkyG~~CrF~Hp~~~  118 (416)
                      ..+|+-|..||.|-||+.|+|+|.+..
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhh
Confidence            357999999999999999999999874

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=91.40  E-value=0.47  Score=52.26  Aligned_cols=23  Identities=26%  Similarity=0.751  Sum_probs=17.1

Q ss_pred             CccCcccccccccCCCCCCCCCCCCCC
Q 014918          297 QAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       297 ~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      ..+|+|+-.   |+ -..|+|.||..-
T Consensus       625 ~~~CrY~pn---Cr-nm~C~F~HPk~c  647 (681)
T KOG3702|consen  625 RGLCRYRPN---CR-NMQCKFYHPKTC  647 (681)
T ss_pred             cccceeccC---cC-CccccccCCccc
Confidence            457877765   77 568999999763

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.21  E-value=0.075  Score=54.67  Aligned_cols=25  Identities=40%  Similarity=0.984  Sum_probs=23.5

Q ss_pred             ccccccccccccCCCCCCCCCCCCCC
Q 014918           93 PDCGYYLKTGTCKYGSTCKYHHPKDR  118 (416)
Q Consensus        93 ~~Ck~flktG~CkyG~~CrF~Hp~~~  118 (416)
                      .+|+||++ |.|+||+.|||.|.+..
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            58999999 99999999999999984

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=91.18  E-value=0.078  Score=52.29  Aligned_cols=29  Identities=28%  Similarity=0.555  Sum_probs=25.9

Q ss_pred             CCCCCccCcccccccccCCCCCCCCCCCCC
Q 014918          293 SRPGQAICSNYSMYGICKFGPTCRFDHPYA  322 (416)
Q Consensus       293 ~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~  322 (416)
                      .+++...|..|.. +.|..|..|.|.|...
T Consensus       148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k~  176 (260)
T KOG2202|consen  148 TDFREAICGQFER-TECSRGGACNFMHVKR  176 (260)
T ss_pred             Cchhhhhhccccc-ccCCCCCcCcchhhhh
Confidence            5667789999999 7999999999999984

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.76  E-value=0.11  Score=53.38  Aligned_cols=24  Identities=38%  Similarity=1.039  Sum_probs=22.7

Q ss_pred             cccccccccCCCCCCCCCCCCCchh
Q 014918          252 PDCRYYMNTGTCKYGADCKFHHPKE  276 (416)
Q Consensus       252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d  276 (416)
                      .+|+||.+ |.|+||+.|||.|.+.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCc
Confidence            79999999 9999999999999776

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.49  E-value=0.12  Score=52.06  Aligned_cols=27  Identities=41%  Similarity=0.906  Sum_probs=24.7

Q ss_pred             cccccccccCCCCCCCCCCCCCchhhh
Q 014918          252 PDCRYYMNTGTCKYGADCKFHHPKERI  278 (416)
Q Consensus       252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d~~  278 (416)
                      .+|.-|-.||+|-||++|+|.|.+...
T Consensus       187 DicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  187 DICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             hhhhhhHhhCcccccchhhhhhhhhhc
Confidence            579999999999999999999988754

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.52  E-value=0.13  Score=51.74  Aligned_cols=27  Identities=37%  Similarity=0.987  Sum_probs=24.6

Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCC
Q 014918          298 AICSNYSMYGICKFGPTCRFDHPYAGY  324 (416)
Q Consensus       298 ~~C~~y~~~G~CkfG~~CkF~Hp~~~~  324 (416)
                      .+|+.|..||+|-||+.|+|.|....+
T Consensus       187 DicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  187 DICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             hhhhhhHhhCcccccchhhhhhhhhhc
Confidence            489999999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	7e-13
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-06
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	9e-06
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-07
2rhk_C	72	Cleavage and polyadenylation specificity factor su	7e-06
2rhk_C	72	Cleavage and polyadenylation specificity factor su	8e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	1e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-04
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	8e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 66.5 bits (162), Expect = 4e-14
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
           CR Y  +G C+YGA C+F H            +       +    +C  + + G C +G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 314 TCRFDHP 320
            C F H 
Sbjct: 67  RCHFIHN 73

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 62.7 bits (152), Expect = 7e-13
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  Y  +G C YG+ C+F H      G   +     +     C  +   G C YGS C +
Sbjct: 15  CRTYSESGRCRYGAKCQFAHG----LGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHF 70

Query: 113 HHPKDRN 119
            H    +
Sbjct: 71  IHNPTED 77

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGS 148
           C  Y ++G C+YG+ C++ H       G           +   + C  +   G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAH-------GLGELRQANRHPKYKTELCHKFKLQGR 61

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 42.6 bits (100), Expect = 9e-06
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 254 CRYYMNTGTCKYGADCKFHHPKE 276
           C  +   G C YG+ C F H   
Sbjct: 53  CHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 35 GGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
          G G  + +    +     C  ++  G C YGS C F H 
Sbjct: 35 GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHN 73

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 24/81 (29%)

Query: 239 SASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQA 298
           S+ S     +  +  C++Y+ TG C    +C + H                         
Sbjct: 2   SSGSSGELPKKREL-CKFYI-TGFCARAENCPYMHG----------------------DF 37

Query: 299 ICSNYSMYGICKFGPTCRFDH 319
            C  Y   G C  G  C F H
Sbjct: 38  PCKLYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 20/78 (25%)

Query: 37  GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCG 96
           G + +S    +  E  C FY   G C    NC + H  +                   C 
Sbjct: 1   GSSGSSGELPKKREL-CKFYIT-GFCARAENCPYMHGDFP------------------CK 40

Query: 97  YYLKTGTCKYGSTCKYHH 114
            Y  TG C  G  C + H
Sbjct: 41  LYHTTGNCINGDDCMFSH 58

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 15/65 (23%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  + R GLC  G  C F H               +     +C +Y K G C     C +
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHE-------------YDMTKMSECYFYSKFGECS-NKECPF 63

Query: 113 HHPKD 117
            H   
Sbjct: 64  LHIDP 68

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 19/67 (28%)

Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
           C++++  G CK G  C+F H  +                ++   + C  YS +G C    
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD---------------MTK--MSECYFYSKFGECS-NK 59

Query: 314 TCRFDHP 320
            C F H 
Sbjct: 60  ECPFLHI 66

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 19/66 (28%)

Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
           C++++  G CK G  C+F H                          C  YS +G C    
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHE-----------------YDMTKMPECYFYSKFGEC-SNK 53

Query: 314 TCRFDH 319
            C F H
Sbjct: 54  ECPFLH 59

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 15/71 (21%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  + R GLC  G  C F H               +    P+C +Y K G C     C +
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHE-------------YDMTKMPECYFYSKFGECS-NKECPF 57

Query: 113 HHPKDRNGAGP 123
            H    +    
Sbjct: 58  LHIDPESKIKD 68

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 248 RPDQPD-CRYYMNTGTCKYG-ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 305
           R D+ + CR Y   G C  G  DC+F HP +                +     +C +Y  
Sbjct: 2   RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK 50

Query: 306 YGICKFGPTCRFDHP 320
               +    C++ HP
Sbjct: 51  GRCSR--EKCKYFHP 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.61
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.52
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.44
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.43
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.31
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.24
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.16
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.13
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.97
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.94
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.93
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.9
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.71
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.63
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.55
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.48
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.96
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.45
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.21
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.08
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.49
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.97
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.65
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	94.14
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	92.12
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.31

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.61  E-value=8.5e-17  Score=134.78  Aligned_cols=88  Identities=25%  Similarity=0.427  Sum_probs=73.1

Q ss_pred             CCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 014918           42 SPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA  121 (416)
Q Consensus        42 ~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~  121 (416)
                      ..+..+..+.+|+||+ .|.|++|++|+|+|+                  ..+|++|++.|.|++|++|+|.|.......
T Consensus         5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~------------------~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~   65 (98)
T 2cqe_A            5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG------------------DFPCKLYHTTGNCINGDDCMFSHDPLTEET   65 (98)
T ss_dssp             CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS------------------SSBCSHHHHTSCCSSCTTCSSBCCCCCHHH
T ss_pred             ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC------------------CCcCcCcccCCcCCCCCCCcccCCCCcccc
Confidence            3456667899999998 699999999999998                  146999987799999999999999653321


Q ss_pred             C---CcccccCCCCCCCCCCCccccccccc
Q 014918          122 G---PVSFNILGLPMRQDEKSCPYYMRTGS  148 (416)
Q Consensus       122 ~---~v~~n~~glP~R~~e~eC~fY~ktG~  148 (416)
                      .   ...++..+.++|.+|+||.+|+|+|.
T Consensus        66 ~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~   95 (98)
T 2cqe_A           66 RELLDKMLADDAEAGAEDEKEVEELKKSGP   95 (98)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred             hhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence            1   13477888999999999999999995

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.52  E-value=3.9e-15  Score=118.11  Aligned_cols=68  Identities=29%  Similarity=0.717  Sum_probs=29.7

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          248 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      +.++++|++|+++|.|+||+.|+|+|+.+++....        ...+.++.+|++|..+|.|++|.+|+|+|+..+
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            46899999999889999999999999887765431        122456789998888899999999999998653

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.44  E-value=3.6e-14  Score=112.52  Aligned_cols=68  Identities=28%  Similarity=0.589  Sum_probs=28.7

Q ss_pred             CCCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918           46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (416)
Q Consensus        46 ~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~  117 (416)
                      .+.++.+|++|+++|.|++|++|+|+|+........    .....++.+|++|+.+|.|+||++|+|.|...
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            356789999998889999999999999976443211    12345678899888889999999999999864

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=9.2e-14  Score=111.23  Aligned_cols=68  Identities=29%  Similarity=0.660  Sum_probs=57.2

Q ss_pred             CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 014918           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF  126 (416)
Q Consensus        47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~  126 (416)
                      ...+++|+||++ |.|++|++|+|+|+....             ..++|+||+++|.|. |++|+|.|.....       
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~-------   64 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMPECYFYSKFGECS-NKECPFLHIDPES-------   64 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-------
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCccccccC-------------cCCCCcccCCCCccC-CCCeeccCCCccc-------
Confidence            345789999996 999999999999996542             245799999999999 9999999998643       


Q ss_pred             ccCCCCCCCCCCCcccccc
Q 014918          127 NILGLPMRQDEKSCPYYMR  145 (416)
Q Consensus       127 n~~glP~R~~e~eC~fY~k  145 (416)
                               ..++|.+|.+
T Consensus        65 ---------~~~~C~~f~~   74 (77)
T 2d9n_A           65 ---------KIKDCPWSGP   74 (77)
T ss_dssp             ---------SCSSSSCCTT
T ss_pred             ---------cCCCCccccc
Confidence                     3579999986

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.31  E-value=1.2e-12  Score=109.45  Aligned_cols=56  Identities=25%  Similarity=0.588  Sum_probs=48.8

Q ss_pred             CCCCCCCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCC
Q 014918          244 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  322 (416)
Q Consensus       244 ~~Perpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~  322 (416)
                      .+..+.++++|+||++ |.|++|+.|+|+|+                      ..+|++|+.+|.|++|++|+|.|+..
T Consensus         6 ~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A            6 SGELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             cCCCCCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            4455569999999986 99999999999996                      35899998669999999999999954

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.24  E-value=2.1e-12  Score=102.37  Aligned_cols=58  Identities=28%  Similarity=0.616  Sum_probs=49.2

Q ss_pred             CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014918           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN  119 (416)
Q Consensus        47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~  119 (416)
                      +...++|+||++ |.|++|++|+|+|+.+..             ..++|+||++.|.|.+ ++|+|.|..+..
T Consensus        13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             CCcCeeCHHHhc-CCCCCCCCCCCccccccc-------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            456789999997 999999999999996532             2468999999999999 999999998643

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.1e-11  Score=99.08  Aligned_cols=56  Identities=29%  Similarity=0.630  Sum_probs=48.6

Q ss_pred             CCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          249 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      .++++|+||++ |.|++|+.|+|+|+.+..                 +..+|+||+++|.|. |++|+|.|....
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence            47899999999 999999999999975421                 246899999999999 999999999764

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.13  E-value=1.1e-11  Score=98.09  Aligned_cols=56  Identities=29%  Similarity=0.614  Sum_probs=48.8

Q ss_pred             CCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          249 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      .++++|+||++ |.|++|+.|+|+|+.+..                 +..+|+||+++|.|.+ ++|+|.|..+.
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            57899999999 999999999999975321                 2569999999999999 99999999764

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.97  E-value=2e-10  Score=90.31  Aligned_cols=59  Identities=39%  Similarity=0.751  Sum_probs=46.5

Q ss_pred             CcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918           50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (416)
Q Consensus        50 ~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~  117 (416)
                      .++|++|++ |.|..|+ .|+|+|+......      .......++|++|++ |.|..| .|+|.|+..
T Consensus         6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             chhCHHHhc-CCCCCCCCCCCCccCcccccc------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            468999985 9999999 5999999653211      011234578999999 999999 999999864

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.94  E-value=9.4e-11  Score=92.14  Aligned_cols=62  Identities=31%  Similarity=0.718  Sum_probs=48.9

Q ss_pred             CCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCCC
Q 014918          250 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  324 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~  324 (416)
                      +.++|++|++ |.|+.|+ .|+|+|+.+.....          +...+..+|.+|++ |.|..| .|+|.|+...|
T Consensus         5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A            5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred             cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence            5579999988 9999999 59999987543211          11223679999999 999999 99999997643

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.9e-10  Score=96.21  Aligned_cols=61  Identities=36%  Similarity=0.690  Sum_probs=48.5

Q ss_pred             CCCcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918           48 PGEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (416)
Q Consensus        48 pg~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~  117 (416)
                      ...++|++|+| |.|..|+ .|+|+|+.+....      .......++|.+|++ |.|.+| .|+|.|+..
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence            34689999997 9999999 7999999754211      011234578999999 999999 999999975

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=2.3e-10  Score=95.79  Aligned_cols=62  Identities=31%  Similarity=0.697  Sum_probs=50.3

Q ss_pred             CCCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          249 PDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       249 pkq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      -+.++|++|++ |.|+.|+ .|+|+|+.+.....          +......+|.+|++ |.|..| .|+|.|+...
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~   80 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH   80 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence            36789999999 9999999 79999987654211          11233679999999 999999 9999999764

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.71  E-value=5.6e-09  Score=84.88  Aligned_cols=58  Identities=33%  Similarity=0.644  Sum_probs=46.4

Q ss_pred             CCcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918           49 GEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (416)
Q Consensus        49 g~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~  117 (416)
                      ..++|++|+| |.|..|+ .|+|+|+.......        ....++|.+|++ |.|..+ .|+|.|+..
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~--------~~~~~vC~dflk-G~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE--------TTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc--------CCceeehhHhhh-ccccCC-CcceeCChH
Confidence            3578999997 9999997 99999996532110        112468999999 999998 999999975

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.63  E-value=1.1e-08  Score=83.23  Aligned_cols=59  Identities=27%  Similarity=0.581  Sum_probs=47.4

Q ss_pred             CCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          250 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      +.++|++|++ |.|+.|+ .|+|+|+...+...            .-...+|.+|++ |.|..+ .|+|.|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence            4578999999 9999997 99999986532111            012569999999 999998 9999999754

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.55  E-value=2.4e-08  Score=82.18  Aligned_cols=58  Identities=34%  Similarity=0.683  Sum_probs=46.7

Q ss_pred             CCcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918           49 GEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (416)
Q Consensus        49 g~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~  117 (416)
                      ..++|++|+| |.|..|+ .|+|+|+......        +....++|.+|++ |.|..+ .|+|.|+..
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v--------~~~~~~vC~dflk-G~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC--------BTTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeeehhhhh-CcCCCC-CcceecCHH
Confidence            3679999998 9999998 9999999664210        0113478999999 999987 999999975

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.48  E-value=3.8e-08  Score=81.05  Aligned_cols=59  Identities=27%  Similarity=0.595  Sum_probs=47.5

Q ss_pred             CCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          250 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      +.++|++|++ |.|+.|+ .|+|+|+.+.....            .-...+|.+|++ |.|.-+ .|+|.|+...
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence            4679999999 9999998 99999987542111            012579999999 999988 9999999754

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.96  E-value=6.2e-06  Score=78.12  Aligned_cols=24  Identities=25%  Similarity=0.591  Sum_probs=20.5

Q ss_pred             CcccccccccCCCCCCCCCCCCCchh
Q 014918          251 QPDCRYYMNTGTCKYGADCKFHHPKE  276 (416)
Q Consensus       251 q~~Cr~y~ktG~Ck~G~~CrF~H~~d  276 (416)
                      --+|++|.+ |.|+| ..|+-+|...
T Consensus       175 LHIC~~Fl~-G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          175 LHICEHFTR-GNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             BCSCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred             eeccchhhc-CCcCC-CCccCccCcc
Confidence            346999999 99999 7999999763

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=4.9e-05  Score=59.64  Aligned_cols=30  Identities=40%  Similarity=0.787  Sum_probs=26.8

Q ss_pred             CCcccccccccCCCCCCCCCCCCCchhhhhc
Q 014918          250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  280 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~  280 (416)
                      +..+|+.|++ |.|+||+.|.|+|..+++..
T Consensus        19 k~~LC~~~~~-G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYMN-GTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHHH-SCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccCc-CCCCCCCccCCcCCHHHHhh
Confidence            5699999965 99999999999999988864

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=0.00022  Score=55.94  Aligned_cols=37  Identities=24%  Similarity=0.459  Sum_probs=28.5

Q ss_pred             cCCCCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhc
Q 014918           39 AQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA   77 (416)
Q Consensus        39 ~~~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~   77 (416)
                      .+.-.+|.. ...+|+.|+ .|.|+||++|.|+|...+.
T Consensus        10 ~W~~R~P~~-k~~LC~~~~-~G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           10 CWQHRFPTG-YFSICDRYM-NGTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCCCCCCCS-CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred             cccccCCCC-CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence            344445544 349999996 7999999999999997654

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.08  E-value=0.00023  Score=67.46  Aligned_cols=44  Identities=27%  Similarity=0.679  Sum_probs=39.6

Q ss_pred             cccccccc----cCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918          252 PDCRYYMN----TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       252 ~~Cr~y~k----tG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      ++|.+| +    .|.|++++.|...|                         +|.+|++ |.|+| ..|+-.|....
T Consensus       152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred             hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCccC
Confidence            489999 7    36999999999999                         8999999 99999 79999999643

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.49  E-value=0.00044  Score=55.74  Aligned_cols=43  Identities=23%  Similarity=0.565  Sum_probs=35.1

Q ss_pred             CcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014918           50 EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPK  116 (416)
Q Consensus        50 ~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~  116 (416)
                      .+.|+||..   |+. ..|.|.|+...                ..|+|+..   |+. ..|.|.|+.
T Consensus         9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~----------------~~Cr~g~~---C~~-~~C~f~HP~   51 (80)
T 2lhn_A            9 LEQCKFGTH---CTN-KRCKYRHARSH----------------IMCREGAN---CTR-IDCLFGHPI   51 (80)
Confidence            578999985   999 99999997532                35999876   997 789999983

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.97  E-value=0.0017  Score=47.66  Aligned_cols=29  Identities=41%  Similarity=0.957  Sum_probs=26.2

Q ss_pred             CCccCcccccccccCCCCCCCCCCCCCCC
Q 014918          296 GQAICSNYSMYGICKFGPTCRFDHPYAGY  324 (416)
Q Consensus       296 ~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~  324 (416)
                      .+.+|.-|..+|+|+.|..|.|.|.....
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~   47 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDISGP   47 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCCCC
Confidence            47899999999999999999999998743

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.65  E-value=0.0043  Score=45.53  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=27.1

Q ss_pred             CCCcccchhhccCCCCCCCCCCCCCcchhc
Q 014918           48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAA   77 (416)
Q Consensus        48 pg~~~CryylrtG~C~~G~~C~F~H~~~~~   77 (416)
                      ..+.+|.-|...|.|++|.+|.|+|+++..
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~   47 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP   47 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCCC
Confidence            468999999999999999999999998753

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=94.14  E-value=0.0036  Score=50.44  Aligned_cols=22  Identities=23%  Similarity=0.819  Sum_probs=17.3

Q ss_pred             CCcccccccccCCCCCCCCCCCCCch
Q 014918          250 DQPDCRYYMNTGTCKYGADCKFHHPK  275 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~  275 (416)
                      ..+.|+|+..   |+. ..|.|.|+.
T Consensus         8 ~~e~CKf~~~---Ctn-~~C~f~Hp~   29 (80)
T 2lhn_A            8 SLEQCKFGTH---CTN-KRCKYRHAR   29 (80)
Confidence            3467998886   888 889999964

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=92.12  E-value=0.038  Score=52.63  Aligned_cols=25  Identities=24%  Similarity=0.685  Sum_probs=22.6

Q ss_pred             CCcccccccccCCCCCCCCCCCCCch
Q 014918          250 DQPDCRYYMNTGTCKYGADCKFHHPK  275 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~  275 (416)
                      ....|.||.+ |.|+.|+.|.|.|.+
T Consensus        69 ~~~~C~ffak-G~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           69 QLFFCLFFAK-GMCCLGPKCEYLHHI   93 (240)
T ss_dssp             CCSBCHHHHT-TCCSCGGGCSSBBSC
T ss_pred             CCeEcCcccc-CCCCCCCCCCccCCC
Confidence            4569999999 999999999999964

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.31  E-value=0.07  Score=50.78  Aligned_cols=26  Identities=27%  Similarity=0.768  Sum_probs=23.5

Q ss_pred             CccCcccccccccCCCCCCCCCCCCCC
Q 014918          297 QAICSNYSMYGICKFGPTCRFDHPYAG  323 (416)
Q Consensus       297 ~~~C~~y~~~G~CkfG~~CkF~Hp~~~  323 (416)
                      ..+|.||.+ |.|+.|..|.|.|-++.
T Consensus        70 ~~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           70 LFFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence            459999999 99999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	416
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	1e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.003
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	2e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	2e-04

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 254 CRYYMNTGTCKYGADCKFHHPKE 276
           CR +  +GTCKYG  C+F H   
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 53 CLFYRRTGLCGYGSNCRFNH 72
          C  +  +G C YG  C+F H
Sbjct: 9  CRPFEESGTCKYGEKCQFAH 28

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 254 CRYYMNTGTCKYGADCKFHHPKE 276
           CR +   G C YG  C F H  +
Sbjct: 11  CRTFHTIGFCPYGPRCHFIHNAD 33

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 254 CRYYMNTGTCKYGADCKFHHPKE 276
           CR Y  +G C+YGA C+F H   
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	416
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.44
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.4
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.28
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.25
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.18
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.15
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.21
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.2
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.2
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	94.55
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	91.62
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	84.09

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=5.3e-08  Score=67.19  Aligned_cols=34  Identities=38%  Similarity=0.831  Sum_probs=30.5

Q ss_pred             CCCCCcccccccccCCCCCCCCCCCCCchhhhhc
Q 014918          247 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  280 (416)
Q Consensus       247 erpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~  280 (416)
                      .+.|+.+|++|.++|.|+||+.|.|+|..++++.
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            4679999999999999999999999999887754

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.6e-08  Score=67.25  Aligned_cols=33  Identities=36%  Similarity=0.792  Sum_probs=29.7

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCCchhhhhc
Q 014918          248 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  280 (416)
Q Consensus       248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~  280 (416)
                      +.|+.+|++|.++|.|+||+.|.|+|..++++.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            579999999998899999999999999887653

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.8e-08  Score=64.75  Aligned_cols=29  Identities=31%  Similarity=0.777  Sum_probs=26.7

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCCchh
Q 014918          248 RPDQPDCRYYMNTGTCKYGADCKFHHPKE  276 (416)
Q Consensus       248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d  276 (416)
                      +.|+.+|++|.++|.|.||+.|.|+|..+
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            57999999999999999999999999754

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.7e-07  Score=63.56  Aligned_cols=34  Identities=32%  Similarity=0.757  Sum_probs=31.0

Q ss_pred             CCCCCCccCcccccccccCCCCCCCCCCCCCCCC
Q 014918          292 PSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  325 (416)
Q Consensus       292 P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~  325 (416)
                      +.++++.+|++|.+.|.|+||++|.|+|...+|.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            4578899999999999999999999999998875

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1e-07  Score=64.24  Aligned_cols=32  Identities=28%  Similarity=0.769  Sum_probs=29.6

Q ss_pred             CCCCccCcccccccccCCCCCCCCCCCCCCCC
Q 014918          294 RPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  325 (416)
Q Consensus       294 rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~  325 (416)
                      ++++.+|++|..+|.|+||++|.|+|...+|.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            67899999999889999999999999998875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-07  Score=62.37  Aligned_cols=30  Identities=27%  Similarity=0.806  Sum_probs=27.4

Q ss_pred             CCCCCccCcccccccccCCCCCCCCCCCCC
Q 014918          293 SRPGQAICSNYSMYGICKFGPTCRFDHPYA  322 (416)
Q Consensus       293 ~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~  322 (416)
                      .++++.+|++|..+|.|+||++|.|+|...
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCC
Confidence            367899999999999999999999999865

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.7e-05  Score=46.57  Aligned_cols=24  Identities=38%  Similarity=0.837  Sum_probs=21.9

Q ss_pred             CCcccchhhccCCCCCCCCCCCCCc
Q 014918           49 GEPDCLFYRRTGLCGYGSNCRFNHP   73 (416)
Q Consensus        49 g~~~CryylrtG~C~~G~~C~F~H~   73 (416)
                      .+.+|+||+ .|.|..|++|.|-|.
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccC
Confidence            368999999 699999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=7.3e-05  Score=46.92  Aligned_cols=24  Identities=29%  Similarity=0.816  Sum_probs=21.8

Q ss_pred             CCccccccccccccCCCCCCCCCCC
Q 014918           91 GQPDCGYYLKTGTCKYGSTCKYHHP  115 (416)
Q Consensus        91 ~~~~Ck~flktG~CkyG~~CrF~Hp  115 (416)
                      +..+|+||++ |.|..|++|.|.|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            3568999999 99999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.003  Score=45.54  Aligned_cols=22  Identities=45%  Similarity=1.079  Sum_probs=20.3

Q ss_pred             ccccccccCCCCCCCCCCCCCc
Q 014918          253 DCRYYMNTGTCKYGADCKFHHP  274 (416)
Q Consensus       253 ~Cr~y~ktG~Ck~G~~CrF~H~  274 (416)
                      .|.||-.++.|..|+.|+|+|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            5999999789999999999994

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0067  Score=43.69  Aligned_cols=22  Identities=41%  Similarity=0.952  Sum_probs=19.7

Q ss_pred             ccchhhccCCCCCCCCCCCCCc
Q 014918           52 DCLFYRRTGLCGYGSNCRFNHP   73 (416)
Q Consensus        52 ~CryylrtG~C~~G~~C~F~H~   73 (416)
                      .|+||-..+.|-.|++|+|+|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            4999986568999999999997

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.022  Score=37.36  Aligned_cols=25  Identities=44%  Similarity=1.069  Sum_probs=23.0

Q ss_pred             CccCcccccccccCCCCCCCCCCCC
Q 014918          297 QAICSNYSMYGICKFGPTCRFDHPY  321 (416)
Q Consensus       297 ~~~C~~y~~~G~CkfG~~CkF~Hp~  321 (416)
                      +.+|..|..+|+|+.|..|...|.+
T Consensus        13 ~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          13 TSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             SCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             cchhhhhhhccccCCCCCCcccCcC
Confidence            6699999999999999999999974

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.09  E-value=0.15  Score=33.24  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=23.3

Q ss_pred             CCcccccccccCCCCCCCCCCCCCc
Q 014918          250 DQPDCRYYMNTGTCKYGADCKFHHP  274 (416)
Q Consensus       250 kq~~Cr~y~ktG~Ck~G~~CrF~H~  274 (416)
                      .+.+|.-|...|.|..|.+|.-+|+
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCc
Confidence            6789999999999999999999995