Citrus Sinensis ID: 016730
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | 2.2.26 [Sep-21-2011] | |||||||
| P46087 | 812 | Putative ribosomal RNA me | yes | no | 0.973 | 0.460 | 0.651 | 1e-148 | |
| Q922K7 | 793 | Putative ribosomal RNA me | yes | no | 0.976 | 0.472 | 0.646 | 1e-147 | |
| O94268 | 608 | Putative ribosomal RNA me | yes | no | 0.916 | 0.578 | 0.654 | 1e-138 | |
| P40991 | 618 | Putative ribosomal RNA me | yes | no | 0.947 | 0.588 | 0.613 | 1e-131 | |
| Q60343 | 274 | tRNA (cytosine(48)-C(5))- | yes | no | 0.651 | 0.912 | 0.408 | 5e-45 | |
| C3LMI5 | 473 | Ribosomal RNA small subun | yes | no | 0.755 | 0.613 | 0.370 | 8e-44 | |
| Q9KRY1 | 473 | Ribosomal RNA small subun | yes | no | 0.755 | 0.613 | 0.370 | 8e-44 | |
| A6TB06 | 477 | Ribosomal RNA small subun | yes | no | 0.713 | 0.574 | 0.362 | 6e-43 | |
| B5XQ35 | 477 | Ribosomal RNA small subun | yes | no | 0.710 | 0.572 | 0.361 | 3e-42 | |
| A0KKI5 | 475 | Ribosomal RNA small subun | yes | no | 0.705 | 0.570 | 0.374 | 3e-42 |
| >sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/379 (65%), Positives = 303/379 (79%), Gaps = 5/379 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 565 STRRFYPHTHNMDGFFIAK 583
|
May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/379 (64%), Positives = 304/379 (80%), Gaps = 4/379 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 LLINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 550 STRRFYPHTHNMDGFFIAK 568
|
May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.20c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/356 (65%), Positives = 291/356 (81%), Gaps = 4/356 (1%)
Query: 27 PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
P DL +Q RI+EIVRVL++FK+L + G +R EYV QL D+ +YYGY+ FL L E+F
Sbjct: 188 PQDLSQIQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELF 247
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E +E E+ E PRP+ +RTNTLKT+RR+LA LINRGVNL+P+ KWSKVGL V++SQ
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQ 307
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DM++APGGK TY+AAL KNTG+I
Sbjct: 308 VPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGII 367
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVI 265
+AN+ +R K+L+AN+HR+GV N IVCNYDG + P +V+G DRVLLDAPCSGTGVI
Sbjct: 368 FANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIG--GFDRVLLDAPCSGTGVI 425
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD+SVKT+KS D S+LQ+QL+L+AID V+A+SK+GG+IVYSTCSI V E+EAVI
Sbjct: 426 YKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQ 485
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
YALKKR +VKLV GL+FGR+GF RFRE RFHPSL+ TRR+YPHVHN+DGFFVAK+
Sbjct: 486 YALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKL 541
|
Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/367 (61%), Positives = 281/367 (76%), Gaps = 3/367 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAK 379
DGFFVAK
Sbjct: 539 DGFFVAK 545
|
Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trm4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 165/284 (58%), Gaps = 34/284 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+ +R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 186
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---- 338
S QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANE 242
Query: 339 --GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
G++ ++G+++ F P+ + FF+AK+
Sbjct: 243 FKGINI-KEGYIKGTLRVFPPN--------------EPFFIAKL 271
|
Catalyzes AdoMet-dependent formation of m5C in tRNA. Cytidine residue at either position 40 or position 48 is likely to be methylated. Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 164/313 (52%), Gaps = 23/313 (7%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
STC++ EN+ V + LK+ V G F E H +P
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAVSFESLGNLFEHASLALTEEGFLH--------IFP 293
Query: 368 HVHNMDGFFVAKV 380
+++ +GFFVAK+
Sbjct: 294 QMYDCEGFFVAKI 306
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|Q9KRY1|RSMF_VIBCH Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 164/313 (52%), Gaps = 23/313 (7%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
STC++ EN+ V + LK+ V G F E H +P
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAVSFESLGNLFEHASLALTEEGFLH--------IFP 293
Query: 368 HVHNMDGFFVAKV 380
+++ +GFFVAK+
Sbjct: 294 QMYDCEGFFVAKI 306
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 163/295 (55%), Gaps = 21/295 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ++ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++LI +A + + GG +VYSTC++ EN++VI++
Sbjct: 206 DADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVIEWL 261
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
L + + V+++P G F E H +P +++ +GFFVA++
Sbjct: 262 LSRYPQAVEILPLGELFPGAADALTAEGFLH--------VFPQIYDCEGFFVARL 308
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella pneumoniae (strain 342) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 162/296 (54%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W + G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G+T E+++G + +Q ASS LPV AL PQ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNPQ-PERVMDVAAAPGSKTTQIAARMGNAGGI 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVR 204
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S E + Q++LI +A + + GG +VYSTC++ EN++V+ +
Sbjct: 205 KDADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVVQW 260
Query: 327 ALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
L + + V+++P G F E H +P +++ +GFFVA++
Sbjct: 261 LLSRYPQAVEILPLGDLFSGAADALTAEGFLH--------VFPQIYDCEGFFVARL 308
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Klebsiella pneumoniae (strain 342) (taxid: 507522) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rsmF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 158/299 (52%), Gaps = 28/299 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK + G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL E+ R ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+ANL R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ + EN+A
Sbjct: 201 GSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSLQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVR-FREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
V L K G F F + E +P + + +GFFVA++
Sbjct: 257 VCQSLLDK-------FGAAFSFDSLADLFPAAEQACTPEGYLHVWPQIFDSEGFFVARL 308
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| 359494318 | 633 | PREDICTED: putative ribosomal RNA methyl | 0.989 | 0.600 | 0.9 | 0.0 | |
| 147778971 | 741 | hypothetical protein VITISV_037193 [Viti | 0.989 | 0.512 | 0.897 | 0.0 | |
| 356569611 | 610 | PREDICTED: putative ribosomal RNA methyl | 0.989 | 0.622 | 0.897 | 0.0 | |
| 356524384 | 614 | PREDICTED: putative ribosomal RNA methyl | 0.989 | 0.618 | 0.889 | 0.0 | |
| 449462383 | 611 | PREDICTED: putative ribosomal RNA methyl | 0.989 | 0.621 | 0.873 | 0.0 | |
| 255563570 | 624 | Proliferating-cell nucleolar antigen p12 | 0.989 | 0.608 | 0.873 | 0.0 | |
| 224061242 | 476 | predicted protein [Populus trichocarpa] | 0.986 | 0.796 | 0.85 | 0.0 | |
| 357460225 | 1069 | hypothetical protein MTR_3g060700 [Medic | 0.942 | 0.338 | 0.867 | 0.0 | |
| 297803436 | 650 | hypothetical protein ARALYDRAFT_492148 [ | 0.989 | 0.584 | 0.827 | 0.0 | |
| 22328952 | 671 | S-adenosyl-L-methionine-dependent methyl | 0.986 | 0.564 | 0.821 | 0.0 |
| >gi|359494318|ref|XP_002266863.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/380 (90%), Positives = 363/380 (95%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+EESDEFRLPTKEE++EE +QPPDLPNLQRRIKEIVRVLSNF L Q+G RK+Y
Sbjct: 135 MQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDY 194
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL++DLGSYYGYNEFLIG LVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 195 VEQLRVDLGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 254
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 255 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 314
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN G+I+ANEMK RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 315 RIVDMAAAPGGKTTYIAALMKNGGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKE 374
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQKQLILAAIDMVDA
Sbjct: 375 LPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDA 434
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF RFREHRFH SLE
Sbjct: 435 NSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLE 494
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
KTRRFYPHVHNMDGFFVAK+
Sbjct: 495 KTRRFYPHVHNMDGFFVAKL 514
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147778971|emb|CAN71575.1| hypothetical protein VITISV_037193 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/380 (89%), Positives = 364/380 (95%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI+EESDEFRLPTKEE++EE +QPPDLPNLQRRIKEIVRVLSNF L Q+G RK+Y
Sbjct: 137 MQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDY 196
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QL++DLGSYYGYNEFLIG LVEMFP +ELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 197 VEQLRVDLGSYYGYNEFLIGVLVEMFPVIELMELIEAFEKPRPICLRTNTLKTRRRDLAD 256
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 257 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 316
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+I+ANEMK RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 317 RIVDMAAAPGGKTTYIAALMKNSGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKE 376
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQKQLILAAIDMVDA
Sbjct: 377 LPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDA 436
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIM+ ENEAVIDYALKKR+VKLVPCGLDFGR GF RFREHRFH SLE
Sbjct: 437 NSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLE 496
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
KTRRFYPHVHNMDGFFVAK+
Sbjct: 497 KTRRFYPHVHNMDGFFVAKL 516
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569611|ref|XP_003552992.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/380 (89%), Positives = 360/380 (94%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI +ESDEFRLPTKEE+E+E +PPDL NLQRRIKEIVRVLSNFK L Q G++RKEY
Sbjct: 116 MQLNINQESDEFRLPTKEELEDEALRPPDLSNLQRRIKEIVRVLSNFKALRQDGSTRKEY 175
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK DL +YYGYNEFLIGALVEMFP VELMELIE+FEKPRP+CLRTNTLKTRRRDLAD
Sbjct: 176 VEQLKKDLCTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPMCLRTNTLKTRRRDLAD 235
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 236 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 295
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RVIDMAAAPGGKTTYIAALMKNTG+I+ANEMK RLKSLT NLHRMGV+NT+VCNYDG E
Sbjct: 296 RVIDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTGNLHRMGVSNTVVCNYDGKE 355
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQK+LILAAIDMVDA
Sbjct: 356 LPKVLGVNVVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDA 415
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIMV ENEAVIDYALKKRDVKLVPCGLDFGR GF RFRE RFHPSLE
Sbjct: 416 NSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFTRFREQRFHPSLE 475
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
KTRRFYPHV NMDGFFVAK+
Sbjct: 476 KTRRFYPHVQNMDGFFVAKL 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524384|ref|XP_003530809.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/380 (88%), Positives = 360/380 (94%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI +ESDEFRLPTKEE++EE +PPDL NLQRR KEIVRVLSNFK L Q G++RKEY
Sbjct: 122 MQLNINQESDEFRLPTKEELDEEALRPPDLSNLQRRTKEIVRVLSNFKALRQDGSTRKEY 181
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK DL +YYGYNEFLIGALVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 182 VEQLKKDLCTYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 241
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE
Sbjct: 242 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 301
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
RV+DMAAAPGGKTTYIAALMKNTG+I+ANEMK RLKSLTANLHRMGV+NT+VCNYDG E
Sbjct: 302 RVVDMAAAPGGKTTYIAALMKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKE 361
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+N VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC++LQK+LILAAIDMVDA
Sbjct: 362 LPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDA 421
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGY+VYSTCSIMV ENE+VIDYALKKRDVKLVPCGLDFGR GF +FRE RFHPSLE
Sbjct: 422 NSKSGGYVVYSTCSIMVAENESVIDYALKKRDVKLVPCGLDFGRPGFTKFREQRFHPSLE 481
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
KTRRFYPHV NMDGFFVAK+
Sbjct: 482 KTRRFYPHVQNMDGFFVAKL 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462383|ref|XP_004148920.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Cucumis sativus] gi|449484971|ref|XP_004157033.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA methyltransferase NOP2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/380 (87%), Positives = 363/380 (95%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
MQLNI++ESDEFRLPTKEE+EEE +PPDL +LQRRI+EIVRVLSNFK L Q+G +RK+Y
Sbjct: 128 MQLNIKDESDEFRLPTKEELEEESLRPPDLSSLQRRIREIVRVLSNFKALRQEGATRKDY 187
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK D+GSYYGYNEFLIG LVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLAD
Sbjct: 188 VEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLAD 247
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQ ASSFLPVMALAPQEKE
Sbjct: 248 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKE 307
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+I+ANE+KA RLKSLTANLHRMGVTNT+VCNYDG E
Sbjct: 308 RIVDMAAAPGGKTTYIAALMKNSGMIFANEIKAQRLKSLTANLHRMGVTNTVVCNYDGKE 367
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPKVLG+NT DRVLLDAPCSG+GV+SKDESVKTSKSLE+IQKC+ LQKQLILAAIDMVD+
Sbjct: 368 LPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDS 427
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGY+VYSTCSIMV ENEA++DYAL+KRDVKLVPCGLDFGR GF+RFRE RFHPSLE
Sbjct: 428 NSKSGGYVVYSTCSIMVDENEAIVDYALRKRDVKLVPCGLDFGRPGFIRFREKRFHPSLE 487
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
KTRRFYPHVHNMDGFFVAK+
Sbjct: 488 KTRRFYPHVHNMDGFFVAKL 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563570|ref|XP_002522787.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus communis] gi|223538025|gb|EEF39638.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/380 (87%), Positives = 360/380 (94%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
++LNI EESDEFRLPTKEE+E+E ++PPDL NLQRRI+EIVRVLSN KDL Q+G RK+Y
Sbjct: 132 LRLNINEESDEFRLPTKEELEDEARRPPDLQNLQRRIREIVRVLSNLKDLKQEGARRKDY 191
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V+QLK+DL SYYGYN+FLIG LVEMFP EL+ELIE+ EKPRPICLRTNTLKTRRRDLAD
Sbjct: 192 VEQLKMDLCSYYGYNDFLIGVLVEMFPVNELIELIEACEKPRPICLRTNTLKTRRRDLAD 251
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA+SFLPVMALAPQEKE
Sbjct: 252 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSANSFLPVMALAPQEKE 311
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+IYANE+K RLKSLTANLHRMGVTNTIVCNYDG E
Sbjct: 312 RIVDMAAAPGGKTTYIAALMKNSGIIYANEIKVPRLKSLTANLHRMGVTNTIVCNYDGRE 371
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
L K+LG N VDRVLLDAPCSGTGVISKDESVKTSKSL+DIQKC++LQKQLILAAIDMVDA
Sbjct: 372 LIKILGHNAVDRVLLDAPCSGTGVISKDESVKTSKSLDDIQKCAHLQKQLILAAIDMVDA 431
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCS+MV ENEAVIDYALKKRDVKLVPCGLDFGR GF+RFREHRFHPSLE
Sbjct: 432 NSKSGGYIVYSTCSMMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREHRFHPSLE 491
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
KTRRFYPHVHNMDGFFVAK+
Sbjct: 492 KTRRFYPHVHNMDGFFVAKL 511
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061242|ref|XP_002300386.1| predicted protein [Populus trichocarpa] gi|222847644|gb|EEE85191.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/380 (85%), Positives = 354/380 (93%), Gaps = 1/380 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
M+LNI EESDEFRLPT +++ +PPD+ +LQRRI EIVRVLSN KDL Q+G+SRK+Y
Sbjct: 1 MKLNIAEESDEFRLPT-QKVCSLSLRPPDIQSLQRRINEIVRVLSNLKDLKQEGSSRKDY 59
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
V QLK+DL YYGYNEFLIGALVEMFP ELMELIE+FEKPRP CLRTNTLKTRRRDLA+
Sbjct: 60 VHQLKIDLCKYYGYNEFLIGALVEMFPVNELMELIEAFEKPRPTCLRTNTLKTRRRDLAN 119
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
VL+NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAG YMLQSASSF+PVMALAPQEKE
Sbjct: 120 VLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGHYMLQSASSFMPVMALAPQEKE 179
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DMAAAPGGKTTYIAALMKN+G+IYANE+KA RL+SLTANLHRMGVTNTIVCNYDG E
Sbjct: 180 RIVDMAAAPGGKTTYIAALMKNSGIIYANEIKAQRLRSLTANLHRMGVTNTIVCNYDGRE 239
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
LPK LGLNTVDRVLLDAPCSGTGVISKDESVK SK+ EDI++C++LQKQL+LAAIDMVDA
Sbjct: 240 LPKTLGLNTVDRVLLDAPCSGTGVISKDESVKISKTSEDIEQCAHLQKQLLLAAIDMVDA 299
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
NSKSGGYIVYSTCSIMV ENEA +DYALKKR+VKLVPCGLDFGR GFVRFR+HRFHPSLE
Sbjct: 300 NSKSGGYIVYSTCSIMVAENEAAVDYALKKRNVKLVPCGLDFGRPGFVRFRQHRFHPSLE 359
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
KTRRFYPHVHNMDGFFVAK+
Sbjct: 360 KTRRFYPHVHNMDGFFVAKL 379
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357460225|ref|XP_003600394.1| hypothetical protein MTR_3g060700 [Medicago truncatula] gi|355489442|gb|AES70645.1| hypothetical protein MTR_3g060700 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/362 (86%), Positives = 340/362 (93%)
Query: 19 EIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFL 78
E+EEE +PPDL NLQRRIKEIVRVLSNFK L Q G +RK+YV QLK D+ SYYGYNEFL
Sbjct: 564 ELEEEALRPPDLSNLQRRIKEIVRVLSNFKALRQDGATRKDYVDQLKTDIRSYYGYNEFL 623
Query: 79 IGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 138
IGALVEMFP VELMELIE+FEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV
Sbjct: 624 IGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV 683
Query: 139 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAA 198
GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKER++DMAAAPGGKTTYIAA
Sbjct: 684 GLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAA 743
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
LMKN+G+I+ANEMK RLKSLTANLHRMGV+NT+V NYDG ELPKVLG N+VDRVLLDAP
Sbjct: 744 LMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLDAP 803
Query: 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318
CSGTGVISKDESVKTSK+LEDI+KC++LQK+L+LAAIDMVD+ SKSGGY+VYSTCSIMV
Sbjct: 804 CSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVA 863
Query: 319 ENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
ENEAVIDY LK+RDVKLVPCGLDFGR GF +FRE RFHPSL+KTRRFYPHVHNMDGFFVA
Sbjct: 864 ENEAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVA 923
Query: 379 KV 380
K+
Sbjct: 924 KL 925
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803436|ref|XP_002869602.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] gi|297315438|gb|EFH45861.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/382 (82%), Positives = 351/382 (91%), Gaps = 2/382 (0%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT--SRK 58
++NI+E DEF+LPT++E+EEE ++PPDLP+LQ RI+EIVRVLSNFKDL KG R
Sbjct: 142 FKMNIKEIPDEFQLPTQKELEEEARRPPDLPSLQIRIREIVRVLSNFKDLRPKGDKHERT 201
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
++V+QLK DLGSYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDL
Sbjct: 202 DFVEQLKADLGSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDL 261
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
ADVL+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+E
Sbjct: 262 ADVLLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPRE 321
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
KERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 322 KERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDG 381
Query: 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMV 298
ELPKVLG N+VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+V
Sbjct: 382 RELPKVLGQNSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLV 441
Query: 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPS 358
DANSK+GGYIVYSTCSIM+ ENEAVIDYALK RDVKLVPCGLDFGR GF F EHRFHPS
Sbjct: 442 DANSKTGGYIVYSTCSIMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFIEHRFHPS 501
Query: 359 LEKTRRFYPHVHNMDGFFVAKV 380
LEKTRRFYPH+HNMDGFFVAK+
Sbjct: 502 LEKTRRFYPHIHNMDGFFVAKL 523
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328952|ref|NP_194390.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana] gi|22136852|gb|AAM91770.1| unknown protein [Arabidopsis thaliana] gi|332659825|gb|AEE85225.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/381 (82%), Positives = 350/381 (91%), Gaps = 2/381 (0%)
Query: 2 QLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGT--SRKE 59
++NI+E+ DEF+LPT++E+EEE ++PPDLP+LQ RI+EIVR+LSNFKDL KG R +
Sbjct: 164 KMNIKEKPDEFQLPTQKELEEEARRPPDLPSLQMRIREIVRILSNFKDLKPKGDKHERND 223
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
YV QLK DL SYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDLA
Sbjct: 224 YVGQLKADLSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDLA 283
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
D+L+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+EK
Sbjct: 284 DILLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREK 343
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
ERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 344 ERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGR 403
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
EL KVLG ++VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+VD
Sbjct: 404 ELTKVLGQSSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVD 463
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
ANSK+GGYIVYSTCS+M+ ENEAVIDYALK RDVKLVPCGLDFGR GF FREHRFHPSL
Sbjct: 464 ANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFREHRFHPSL 523
Query: 360 EKTRRFYPHVHNMDGFFVAKV 380
EKTRRFYPHVHNMDGFFVAK+
Sbjct: 524 EKTRRFYPHVHNMDGFFVAKL 544
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| TAIR|locus:2133832 | 671 | AT4G26600 [Arabidopsis thalian | 0.986 | 0.564 | 0.811 | 9.7e-167 | |
| TAIR|locus:2178393 | 682 | OLI2 "OLIGOCELLULA 2" [Arabido | 0.971 | 0.546 | 0.815 | 5e-163 | |
| UNIPROTKB|F1N3G2 | 820 | NOP2 "Uncharacterized protein" | 0.976 | 0.457 | 0.651 | 9.1e-132 | |
| UNIPROTKB|F1SLR6 | 821 | NOP2 "Uncharacterized protein" | 0.976 | 0.456 | 0.651 | 9.1e-132 | |
| RGD|1304616 | 772 | Nop2 "NOP2 nucleolar protein" | 0.976 | 0.485 | 0.656 | 1.9e-131 | |
| UNIPROTKB|E2RCH6 | 826 | NOP2 "Uncharacterized protein" | 0.979 | 0.455 | 0.639 | 1e-130 | |
| UNIPROTKB|P46087 | 812 | NOP2 "Putative ribosomal RNA m | 0.973 | 0.460 | 0.646 | 2.8e-130 | |
| MGI|MGI:107891 | 793 | Nop2 "NOP2 nucleolar protein" | 0.976 | 0.472 | 0.643 | 1.2e-129 | |
| ZFIN|ZDB-GENE-050309-7 | 739 | nop2 "NOP2 nucleolar protein h | 0.981 | 0.510 | 0.631 | 1.7e-128 | |
| UNIPROTKB|F1NH85 | 549 | Gga.5513 "Uncharacterized prot | 0.968 | 0.677 | 0.623 | 2.6e-127 |
| TAIR|locus:2133832 AT4G26600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1622 (576.0 bits), Expect = 9.7e-167, P = 9.7e-167
Identities = 309/381 (81%), Positives = 344/381 (90%)
Query: 2 QLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTS--RKE 59
++NI+E+ DEF+LPT+ ++PPDLP+LQ RI+EIVR+LSNFKDL KG R +
Sbjct: 164 KMNIKEKPDEFQLPTQKELEEEARRPPDLPSLQMRIREIVRILSNFKDLKPKGDKHERND 223
Query: 60 YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLA 119
YV QLK DL SYYGYNEFLIG L+EMFP VELMELIE+FEK RP +RTNTLKTRRRDLA
Sbjct: 224 YVGQLKADLSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDLA 283
Query: 120 DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK 179
D+L+NRGVNLDPLSKWSKVGL+VYDSQVPIGATPEY+AGFYMLQSASSFLPVMALAP+EK
Sbjct: 284 DILLNRGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREK 343
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239
ERV+DMAAAPGGKTTY+AALMKNTG+IYANEMK RLKSL+ANLHRMGVTNTIVCNYDG
Sbjct: 344 ERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGR 403
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
EL KVLG ++VDRVLLDAPCSGTGVISKDESVKTSKS +DI+K ++LQKQLIL AID+VD
Sbjct: 404 ELTKVLGQSSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVD 463
Query: 300 ANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSL 359
ANSK+GGYIVYSTCS+M+ ENEAVIDYALK RDVKLVPCGLDFGR GF FREHRFHPSL
Sbjct: 464 ANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFREHRFHPSL 523
Query: 360 EKTRRFYPHVHNMDGFFVAKV 380
EKTRRFYPHVHNMDGFFVAK+
Sbjct: 524 EKTRRFYPHVHNMDGFFVAKL 544
|
|
| TAIR|locus:2178393 OLI2 "OLIGOCELLULA 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
Identities = 304/373 (81%), Positives = 334/373 (89%)
Query: 8 ESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD 67
E D FRLPT+ + PPDLP L+ RI+EIVR L NFK K T+RK V+QLK D
Sbjct: 189 EHDAFRLPTEEELEEEARGPPDLPLLKTRIEEIVRALKNFKAFRPKDTTRKACVEQLKAD 248
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
LGSYYGYN FLIG LVEMFPP ELMELIE+FEK RP +RTNTLKTRRRDLADVL+NRGV
Sbjct: 249 LGSYYGYNSFLIGTLVEMFPPGELMELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGV 308
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
NLDPLSKWSKVGLV+YDSQVPIGATPEY+AG+YMLQ ASSFLPVMALAP+E ER++D+AA
Sbjct: 309 NLDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAA 368
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247
APGGKTTYIAALMKNTGLIYANEMK RLKSLTANLHRMGVTNTIVCNYDG ELPKVLG
Sbjct: 369 APGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQ 428
Query: 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307
NTVDRVLLDAPCSGTG+ISKDESVK +K++++I+K ++LQKQL+LAAIDMVDANSK+GGY
Sbjct: 429 NTVDRVLLDAPCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGY 488
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
IVYSTCSIMVTENEAVIDYALKKRDVKLV CGLDFGR+GF RFREHRF PSL+KTRRFYP
Sbjct: 489 IVYSTCSIMVTENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYP 548
Query: 368 HVHNMDGFFVAKV 380
HVHNMDGFFVAK+
Sbjct: 549 HVHNMDGFFVAKL 561
|
|
| UNIPROTKB|F1N3G2 NOP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
Identities = 247/379 (65%), Positives = 301/379 (79%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 210 LQINVDEE-EPFLLPP-AGEVEQDTQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRSEY 267
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 268 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 327
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 328 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 387
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTN I+ +YDG +
Sbjct: 388 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQ 447
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 448 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 505
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 506 TSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 565
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 566 STRRFYPHTHNMDGFFIAK 584
|
|
| UNIPROTKB|F1SLR6 NOP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
Identities = 247/379 (65%), Positives = 300/379 (79%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 208 LQINVDEE-EPFVLPL-AGEMEQDAQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRAEY 265
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+Q+L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 266 LQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQ 325
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 326 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 385
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ NYDG +
Sbjct: 386 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYDGRQ 445
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTG+ISKD +VKT+K +DI +C++LQK+L+L+AID V A
Sbjct: 446 FPKVVG--GFDRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVSA 503
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 504 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 563
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 564 STRRFYPHTHNMDGFFIAK 582
|
|
| RGD|1304616 Nop2 "NOP2 nucleolar protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
Identities = 249/379 (65%), Positives = 300/379 (79%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 189 LQINVEEE-EAFVLPP-AGQTDQDTQTPDLQRVHKRIQDIVGVLRDFGAQREEGRSRTEY 246
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ QL+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 247 LSQLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 306
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 307 ALINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 366
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTIV +YDG +
Sbjct: 367 RILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYDGRQ 426
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 427 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 484
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHP+L
Sbjct: 485 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLR 544
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 545 ATRRFYPHTHNMDGFFIAK 563
|
|
| UNIPROTKB|E2RCH6 NOP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
Identities = 247/386 (63%), Positives = 302/386 (78%)
Query: 1 MQLNIREESDEFRLPTKXXXXXX-------KQQPPDLPNLQRRIKEIVRVLSNFKDLSQK 53
+Q+N+ EE + F LP Q PDL + +RI++IV VL +F ++
Sbjct: 213 LQINVDEE-ESFVLPLPGEMEQDILPVLDPHAQAPDLQRIHKRIQDIVGVLRDFGTQREE 271
Query: 54 GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT 113
G SR EY+ +L+ DL +YY Y +FL+G L+++FP EL+E +E+ E PRPI LRTNTLKT
Sbjct: 272 GRSRSEYLHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKT 331
Query: 114 RRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMA 173
RRRDLA LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG+YMLQ ASS LPVMA
Sbjct: 332 RRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGYYMLQGASSMLPVMA 391
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233
LAPQE ER++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+
Sbjct: 392 LAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTII 451
Query: 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA 293
+YDG + PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+
Sbjct: 452 SHYDGRQFPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLS 509
Query: 294 AIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREH 353
AID V+A SK+GGY+VY TCSIMV ENE V+DYALKKR+V+LVP GLDFG++GF RFRE
Sbjct: 510 AIDSVNATSKTGGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRER 569
Query: 354 RFHPSLEKTRRFYPHVHNMDGFFVAK 379
RFHP+L TRRFYPH HNMDGFF+AK
Sbjct: 570 RFHPTLRSTRRFYPHTHNMDGFFIAK 595
|
|
| UNIPROTKB|P46087 NOP2 "Putative ribosomal RNA methyltransferase NOP2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
Identities = 245/379 (64%), Positives = 298/379 (78%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP Q PDL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPP-AGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 565 STRRFYPHTHNMDGFFIAK 583
|
|
| MGI|MGI:107891 Nop2 "NOP2 nucleolar protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
Identities = 244/379 (64%), Positives = 300/379 (79%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP Q PDL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPP-AGETDQDGQAPDLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 LLINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 550 STRRFYPHTHNMDGFFIAK 568
|
|
| ZFIN|ZDB-GENE-050309-7 nop2 "NOP2 nucleolar protein homolog (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 240/380 (63%), Positives = 300/380 (78%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q NI + +++F+LP P DL + +RIK+ V VLSNF + ++G R EY
Sbjct: 206 VQANI-DTTEKFKLPGAADRAKEGLLPMDLKTIHQRIKDNVDVLSNFNEKREEGKERSEY 264
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ DL +YY YN+FLI L+++F EL++ +E+ E RP+ +RTNTLKTRRRDLA
Sbjct: 265 LSLLRADLCTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQ 324
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSKVGLV+YDS VPIGATPEY+AG YMLQ ASSFLPVMAL+PQE E
Sbjct: 325 ALINRGVNLDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGE 384
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V+DM+AAPGGKTTY+A LM+NTG+I AN+ RLKS+ N+HR+GVTN ++CNYDG +
Sbjct: 385 SVLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQ 444
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT K DI + ++LQK+LIL+AID V+A
Sbjct: 445 FPKVMG--GFDRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNA 502
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
+S++GGY+VY TCSIMV ENE V+DYALKKR+VKLVP GLDFG++GF RF+E RFHPSL+
Sbjct: 503 DSQTGGYLVYCTCSIMVEENEWVVDYALKKRNVKLVPTGLDFGKEGFTRFKEKRFHPSLK 562
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
+RRFYPH HNMDGFFVAK+
Sbjct: 563 LSRRFYPHSHNMDGFFVAKL 582
|
|
| UNIPROTKB|F1NH85 Gga.5513 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 237/380 (62%), Positives = 300/380 (78%)
Query: 1 MQLNIREESDEFRLPTKXXXXXXKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+QLN+ E +EF+LPT + +PPDL + +RIK + VL NF ++G +R+EY
Sbjct: 178 LQLNL-EIDEEFKLPTDE-----QTEPPDLHVIHQRIKSNMEVLQNFGVKREEGRTRQEY 231
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ L+ D+ +YY Y++FL+ L+++FP EL+ +E+ E PRP+ +RTNTLKTRRRDLA
Sbjct: 232 LALLRRDMAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQ 291
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLV+YDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 292 ALINRGVNLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENE 351
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RL+S+ NLHR+GVTN +V N DG +
Sbjct: 352 RILDMCCAPGGKTSYIAQLMKNTGMILANDSNAERLRSVVGNLHRLGVTNAVVSNCDGRQ 411
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKVLG DRVLLDAPCSGTGVISKD ++KT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 412 FPKVLG--GFDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDSVNA 469
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
S++GGYIVY TCSI V ENE V+DYALKKR+V+LV GLDFG++GF RF++ RFHPSL+
Sbjct: 470 TSETGGYIVYCTCSITVEENEWVVDYALKKRNVRLVATGLDFGKEGFTRFKDRRFHPSLK 529
Query: 361 KTRRFYPHVHNMDGFFVAKV 380
TRRFYPH HNMDGFF+AK+
Sbjct: 530 STRRFYPHTHNMDGFFIAKL 549
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
| 4th Layer | 2.1.1.29 | 0.737 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 384 | |||
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 1e-113 | |
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 1e-109 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 1e-102 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 1e-63 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 4e-60 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 6e-55 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 5e-44 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 5e-36 | |
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; | 4e-34 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; | 7e-28 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 330 bits (849), Expect = e-113
Identities = 137/276 (49%), Positives = 172/276 (62%), Gaps = 15/276 (5%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK DL + L NRGV L+P + V +S IG+TPEY+ G+Y Q A
Sbjct: 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFE--VKESPFSIGSTPEYLFGYYYPQEA 58
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P +AL P+E ERV+DMAAAPGGKTT I+ LMKN G I ANE+ SR K+L +N++R
Sbjct: 59 SSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNINR 118
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
MGV NTIV N DG + L D +LLDAPCSG GVI KD S K + S EDI+ CS
Sbjct: 119 MGVLNTIVINADGRKFGAY--LLKFDAILLDAPCSGEGVIRKDPSRKRNWSEEDIKYCSL 176
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344
LQK+LI AAID + K GG +VYSTCS+ V ENE VIDY L+KR DV G
Sbjct: 177 LQKELIDAAIDAL----KPGGVLVYSTCSLEVEENEEVIDYILRKRPDVVEEI---IKGD 229
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ F ++ R +P ++ +GFFVAK+
Sbjct: 230 EFFGINIG---KGEVKGALRVFPQNYDCEGFFVAKL 262
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-109
Identities = 128/319 (40%), Positives = 179/319 (56%), Gaps = 15/319 (4%)
Query: 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN 124
L Y + E+L+ L + E + + +P P LR NTLK +L + L
Sbjct: 45 ILRPAFRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEE 104
Query: 125 RGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
GV + W ++ ++ PIG PE+ G +Q +S LP + L P+ ERV+D
Sbjct: 105 AGVLDEK--PWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLD 162
Query: 185 MAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
+ AAPGGKTT++A LM+N G I A ++ RLK L NL R+GV N IV N D L +
Sbjct: 163 LCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE 222
Query: 244 VL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+L G DR+LLDAPCSGTGVI +D VK ++ EDI + + LQK+++ AA+ ++
Sbjct: 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL---- 278
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
K GG +VYSTCS+ ENE V++ L++ D +L P L +G E L K
Sbjct: 279 KPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWG-----PLFEGLG-SELGK 332
Query: 362 TRRFYPHVHNMDGFFVAKV 380
TRR YPHVH DGFF+AK+
Sbjct: 333 TRRLYPHVHGTDGFFIAKL 351
|
Length = 355 |
| >gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = e-102
Identities = 128/288 (44%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++E+ P LR N LKT+R L L GV L+PL ++ L V D IG+ P
Sbjct: 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPH-ALPVGDLPYSIGSLP 59
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ G +Q ASS L +AL PQE E ++DM AAPGGKTT+IA LMKN G + A +
Sbjct: 60 PFENGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNK 119
Query: 214 SRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
RLK + AN+ R+GV N IV K+LG DR+LLDAPCSGTGVI +D +K
Sbjct: 120 QRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLG-GEFDRILLDAPCSGTGVIRRDPDIK 178
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331
+ DI + + LQK+L+ AA D+V K GG +VYSTCS++ ENEAVI Y L+KR
Sbjct: 179 WLRREADIAQLAELQKELLKAAWDLV----KPGGVLVYSTCSVLPEENEAVIKYFLQKRP 234
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
DV+LVP GL G+ ++ + PH N DGFF AK
Sbjct: 235 DVELVPTGLSEGKIALA-------KRIVKGGLQSLPHELNRDGFFFAK 275
|
Length = 277 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 1e-63
Identities = 99/309 (32%), Positives = 160/309 (51%), Gaps = 17/309 (5%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ ++ + + +++ES +P +R NTLK +L + L G ++
Sbjct: 147 YSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEE 206
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
S S LV+ + I T + G +Q SS L AL P+ + V+D AAPGG
Sbjct: 207 -SLLSPEALVI--EKGNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGG 263
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+IA L+KNTG + A ++ +LK + N R+G+TN D ++ + D
Sbjct: 264 KTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFD 322
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
++L+DAPCSG GVI + +K +K+ EDI+ +Q + IL + V K GG +VYS
Sbjct: 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLE-IL---ESVAQYLKKGGILVYS 378
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TC+I ENE VI+ L++ + +LVP L + + + + + P+ +
Sbjct: 379 TCTIEKEENEEVIEAFLEEHPEFELVP--LQHEKP------DELVYEVKDGYLQILPNDY 430
Query: 371 NMDGFFVAK 379
DGFF+AK
Sbjct: 431 GTDGFFIAK 439
|
Length = 444 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 4e-60
Identities = 112/314 (35%), Positives = 164/314 (52%), Gaps = 41/314 (13%)
Query: 84 EMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV- 142
M + + + I + ++P +R NTLK D ++ G L P+ W + G +
Sbjct: 15 AMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIP-WCEEGFWIE 73
Query: 143 --YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAA 198
+ +P+G T E+++G + +Q ASS LPV AL +RV+DMAAAPG KTT IAA
Sbjct: 74 RDDEDALPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAA 133
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---LNTVDRVLL 255
LM N G I ANE ASR+K L AN+ R GV+N + ++DG +V G T D +LL
Sbjct: 134 LMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG----RVFGAALPETFDAILL 189
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPCSG G + KD + S E + + Q++LI +A + K GG +VYSTC++
Sbjct: 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPGGTLVYSTCTL 245
Query: 316 MVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR------RFY 366
EN+AV + LK+ V+ P G F P EK +
Sbjct: 246 NREENQAVCLW-LKETYPDAVEFEPLGDLF--------------PGAEKALTEEGFLHVF 290
Query: 367 PHVHNMDGFFVAKV 380
P +++ +GFFVA++
Sbjct: 291 PQIYDSEGFFVARL 304
|
Length = 470 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 6e-55
Identities = 97/315 (30%), Positives = 154/315 (48%), Gaps = 31/315 (9%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L + + ++L+ +E E +L + F +P + LR N L+T ++ L G+
Sbjct: 143 LAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGI 202
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
P+ + GL + + I P Y G++ +Q S+ L L PQ E ++D A
Sbjct: 203 TATPIPGLPQ-GLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACA 261
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG- 246
APGGKTT+IA LM + G I+A + ASRLK L N R+G+ + + D L ++
Sbjct: 262 APGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321
Query: 247 -LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
DR+LLDAPCSG G + + + ++ E IQ+ + LQ +L+ + ++ K G
Sbjct: 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----KPG 377
Query: 306 GYIVYSTCSIMVTENEAVIDYAL-KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G +VY+TC++ ENEA I+ L + D KL P K +
Sbjct: 378 GTLVYATCTLHPAENEAQIEQFLARHPDWKLEP----------------------PKQKI 415
Query: 365 FYPHVHNMDGFFVAK 379
+PH + DGFF+A
Sbjct: 416 -WPHRQDGDGFFMAV 429
|
Length = 434 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 5e-44
Identities = 93/324 (28%), Positives = 148/324 (45%), Gaps = 24/324 (7%)
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
E + L + Y + E+L+ L + +P + E+ + P+ LR N K R +
Sbjct: 122 EELLAEFNALDARYLHPEWLVKRLQKAYPGQW-QSICEANNQRPPMWLRINRTKHSRDEW 180
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
+L G+ P V ++ + A P + G+ +Q AS+ LAPQ
Sbjct: 181 LALLAEAGMKGFPHDLAPDA--VRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQN 238
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYD 237
+E ++D AAPGGKTT+I L + A ++ RLK + NL R+G+T + D
Sbjct: 239 EETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGD 297
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
G + DR+LLDAPCS TGVI + +K + DI + + LQ +++ A +
Sbjct: 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL 357
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
+ K+GG +VY+TCS++ EN I L++ DF F +
Sbjct: 358 L----KTGGTLVYATCSVLPEENSEQIKAFLQEH--------PDF------PFEKTGTPE 399
Query: 358 SLEKTR-RFYPHVHNMDGFFVAKV 380
+ + PH DGFF AK+
Sbjct: 400 QVRDGGLQILPHAEEGDGFFYAKL 423
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 5e-36
Identities = 80/292 (27%), Positives = 144/292 (49%), Gaps = 8/292 (2%)
Query: 46 NFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPIC 105
NFK L R V + K +L Y + ++L+ P ++ ++E ++P P
Sbjct: 107 NFKKLVNAVLRRLRTVPEPK-ELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTM 165
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N+L R ++ +L G P K S L+V V + + G +Q
Sbjct: 166 LRVNSLAITREEVIKILAEEGTEAVP-GKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGE 224
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS + + + + RV+D AAPGGKTT IA LMK+ G I A ++ +++ + + R
Sbjct: 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
+ +++ + D L + + +T DR+L+DAPC+ G V + ED +K S
Sbjct: 285 LKLSSIEIKIADAERLTEYVQ-DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE 343
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN-EAVIDYALKKRDVKLV 336
+Q +++ A ++ + GG ++YSTC++ EN E V + +++D +++
Sbjct: 344 IQLRIVSQAWKLL----EKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391
|
Length = 431 |
| >gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-34
Identities = 97/327 (29%), Positives = 156/327 (47%), Gaps = 33/327 (10%)
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
++E + +L+ D + Y + +LI L + +P + ++ + + P+ LR N R
Sbjct: 126 QEELLAELQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRHHSRD 184
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
+L G+ P + + ++ VP+ P + G+ +Q A++ L LAP
Sbjct: 185 AYLALLAEAGIEAFP-HAVGPDAIRL-ETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAP 242
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
Q ERV+D AAPGGKT +I L ++ A ++ A RL+ + NL R+G+ T++
Sbjct: 243 QNGERVLDACAAPGGKTAHILELAPQAQVV-ALDIDAQRLERVRENLQRLGLKATVIVG- 300
Query: 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI- 295
D + + DR+LLDAPCS TGVI + +K + EDI + LQ + IL A+
Sbjct: 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSE-ILDALW 359
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL--DFGRQGFVRFRE 352
++ K GG ++Y+TCSI+ ENE I L + D +L+ G GRQ
Sbjct: 360 PLL----KPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQPGRQ------- 408
Query: 353 HRFHPSLEKTRRFYPHVHNMDGFFVAK 379
P + DGFF A
Sbjct: 409 ------------LLPGEEDGDGFFYAL 423
|
Length = 427 |
| >gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 7e-28
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222
Q+ + L + L PQ V+D+ AAPGGK+T++A LM+N G I A + +L+ + ++
Sbjct: 235 QNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294
Query: 223 LHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK 282
+G+ TI+ +G+ D +LLDAPC+GTGV+ + ++ + E + +
Sbjct: 295 ASALGI--TIIETIEGDARSFSPEE-QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAE 351
Query: 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
LQ +L+ A ++ GG +VY+TCSI ENE I+ L++
Sbjct: 352 LVGLQAELLDHAASLLKP----GGVLVYATCSIEPEENELQIEAFLQR 395
|
Length = 445 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 100.0 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 100.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 100.0 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 100.0 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 100.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 100.0 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 100.0 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 100.0 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.76 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.7 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.63 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.56 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.55 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.55 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.55 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.54 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.54 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.54 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.53 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.52 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.51 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.48 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.48 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.48 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.48 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.47 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.46 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.45 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.42 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.41 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.4 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.4 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.4 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.39 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.38 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.38 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.38 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.37 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.37 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.37 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.37 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.37 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.37 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.36 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.36 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.35 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.34 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.34 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.34 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.32 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.29 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.29 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.29 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.28 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.27 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.27 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.27 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.26 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.26 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.26 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.24 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.23 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.22 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.22 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.22 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.21 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.18 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.18 | |
| PLN02476 | 278 | O-methyltransferase | 99.18 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.18 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.18 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.17 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.16 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.15 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.15 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.13 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.12 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.12 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.11 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.11 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.11 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.1 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.09 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.09 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.06 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.06 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.05 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.04 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.04 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.02 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.02 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.01 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 99.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.99 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.99 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.99 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.99 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.99 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.98 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.98 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.98 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.97 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.97 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.97 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.97 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.96 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.96 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.96 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.96 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.95 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.95 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.93 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.92 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.91 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.91 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.91 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.9 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.9 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.88 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.88 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.87 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.87 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.87 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.85 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.84 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.82 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.81 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.79 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.79 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.79 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.77 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.77 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.77 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.77 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.77 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.75 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.74 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.74 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.72 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.71 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.7 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.7 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.7 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.69 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.69 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 98.68 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.67 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.66 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.65 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.64 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.62 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.62 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.62 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.61 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.61 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.59 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.57 | |
| PLN02366 | 308 | spermidine synthase | 98.55 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.55 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.51 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.5 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.5 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.49 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.49 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.48 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.48 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.46 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.45 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.44 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.41 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.39 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.38 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.36 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.35 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.34 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.34 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.32 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.32 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.31 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.31 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.3 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.27 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.25 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.23 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.19 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.13 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 98.09 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.09 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.07 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.04 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.03 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.02 | |
| PLN02823 | 336 | spermine synthase | 98.02 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.94 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.93 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.93 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.93 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.92 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.92 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.92 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.9 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.88 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.87 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.86 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.86 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.85 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.8 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.78 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 97.78 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.77 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.75 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.72 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.71 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.68 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.53 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.51 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.51 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.49 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.47 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.45 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.45 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.43 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.43 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.42 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.39 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 97.36 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.35 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.33 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.26 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.23 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.21 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.19 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 97.17 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.16 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 97.13 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.04 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.95 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.91 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.86 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.86 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.78 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.77 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.73 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 96.73 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.68 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.68 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.64 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.57 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 96.56 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.52 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.35 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.27 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.23 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.2 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.04 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.02 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 95.94 | |
| PHA01634 | 156 | hypothetical protein | 95.92 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.91 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.75 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.69 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.62 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.42 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 95.34 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.29 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.27 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.26 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.07 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.85 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.54 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 94.53 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.38 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.38 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.29 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.98 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.61 | |
| KOG4174 | 282 | consensus Uncharacterized conserved protein [Funct | 93.5 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 93.42 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.34 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 93.28 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.15 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.02 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 92.9 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 92.85 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.76 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 92.67 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.0 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 91.99 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.81 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 91.63 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 91.6 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.44 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 91.31 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.31 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 91.3 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 91.22 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.11 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 90.95 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.78 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 90.59 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 90.49 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.28 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 90.28 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 90.24 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.08 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 90.04 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 89.94 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 89.78 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.76 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 89.72 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.71 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 89.61 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.6 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 89.55 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 89.47 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 89.4 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.32 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 89.22 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 89.01 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 88.85 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 88.7 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 88.41 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 88.28 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.23 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 88.1 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 88.07 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 88.07 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 88.02 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 88.01 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 88.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 87.88 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 87.84 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 87.72 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 87.58 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 87.52 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 87.5 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 87.46 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.31 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 87.23 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 87.2 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 87.09 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 87.02 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 86.94 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.88 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 86.87 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 86.68 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.6 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 86.6 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 86.59 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 86.53 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.49 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 86.32 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 86.25 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 86.18 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.14 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 86.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 85.97 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 85.94 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 85.92 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 85.34 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 85.33 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 85.28 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 85.22 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 85.09 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 85.08 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 85.08 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 85.06 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 85.06 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 85.02 | |
| PRK08643 | 256 | acetoin reductase; Validated | 84.79 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.57 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 84.53 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 84.36 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 84.26 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.95 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.68 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 83.4 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 83.37 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 83.22 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.03 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.98 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.81 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 82.71 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 82.66 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 82.65 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 82.46 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 82.39 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.33 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 82.11 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 82.1 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 82.06 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 81.82 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 81.81 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 81.79 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 81.78 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 81.78 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 81.58 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 81.47 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 81.3 | |
| PRK05717 | 255 | oxidoreductase; Validated | 81.18 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.17 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 81.16 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 80.91 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 80.68 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 80.51 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 80.29 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 80.24 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 80.15 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 80.14 |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-82 Score=610.35 Aligned_cols=373 Identities=68% Similarity=1.040 Sum_probs=354.1
Q ss_pred cccccccCcccCCChHHHhHhcCCCCChhHHHHHHHHHHHHHHhcccccccCCCHHHHHHHhhhhHHHHhcChHHHHHHH
Q 016730 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGAL 82 (384)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ri~~~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~wl~~~l 82 (384)
+|+.++...+.+|+.+++++ ...++|++.+..|+.+.+.++.+++.....++.++++...+..+++.+|+|..+++..+
T Consensus 67 ~~~~~~~~~l~lp~~~~~~~-~~~~P~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~ 145 (460)
T KOG1122|consen 67 TNTFEEGDPLLLPTLEEEEE-KDSVPDLQNVDLRIVELVPVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKL 145 (460)
T ss_pred hccccccccccCcccccccc-cccCCccchhhHHhhhhhhhhcchhcccccccchhhHHHHHHhcccceechHHHHHHHh
Confidence 35667788999999885544 44555999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEE
Q 016730 83 VEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYML 162 (384)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 162 (384)
.+.++..++.+++++++.++|+++|.||+|..+.++...|..+|+...|.+.|+..|+.++++.++++++|+|++|+|.+
T Consensus 146 ~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~L 225 (460)
T KOG1122|consen 146 MELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYML 225 (460)
T ss_pred cccccHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceee
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
|+.+|++++++|+||||+|||||||||||||+|||++|+++|.|+|+|.+..|++.++.|++|+|++|.+++++|+..++
T Consensus 226 Q~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 226 QNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred ccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 243 -KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 243 -~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
..+. .+||+||+||||||+|++.|++.++|.++..++.++..+|+++|.+|++++ ++||+||||||||+++|||
T Consensus 306 ~~~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv----~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 306 EKEFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV----KAGGVLVYSTCSITVEENE 380 (460)
T ss_pred ccccC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc----cCCcEEEEEeeecchhhhH
Confidence 3343 489999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHhcC-CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 322 AVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 322 ~vv~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+||+|+|+++ .++++|.++.+|.+| .|++++|+|++....|++||.|++||||+|||+|.
T Consensus 381 ~vV~yaL~K~p~~kL~p~~~~iG~~G--~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~ 441 (460)
T KOG1122|consen 381 AVVDYALKKRPEVKLVPTGLDIGGEG--RFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKA 441 (460)
T ss_pred HHHHHHHHhCCceEeccccccCCCCC--cccCcccCcchhheeeecCcccCCchHHHHHHHhh
Confidence 9999999987 899999999999998 78899999999999999999999999999999873
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=556.83 Aligned_cols=302 Identities=41% Similarity=0.646 Sum_probs=269.7
Q ss_pred HHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCC
Q 016730 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149 (384)
Q Consensus 70 ~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (384)
..|++|+|++++|.+.||.+++++++++++.++|+++|||+++.+++++.+.|...|+...+. .+.+.++. +....++
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-i~~~~~~ 127 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKP-WVLDEVLR-IEASGPI 127 (355)
T ss_pred ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccC-CccccEEE-ecCCCCc
Confidence 569999999999999999888999999999999999999999999999999999998877765 44445555 4566788
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCC
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV 228 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~ 228 (384)
..+++|.+|+|++||.+||+++.+|+|+||++||||||||||||+||+++|.+.+ .|+|+|++++|++.+++|++|+|+
T Consensus 128 ~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~ 207 (355)
T COG0144 128 GRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV 207 (355)
T ss_pred ccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999855 459999999999999999999999
Q ss_pred ceEEEEecCCCCcccccCCC-CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 229 TNTIVCNYDGNELPKVLGLN-TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 229 ~~v~~~~~D~~~~~~~~~~~-~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
.|+.+++.|++.++.....+ +||+||+||||||+|++||||+++|.++++++..++.+|++||.+|+++| ||||+
T Consensus 208 ~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l----k~GG~ 283 (355)
T COG0144 208 RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL----KPGGV 283 (355)
T ss_pred CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCE
Confidence 99999999998776544333 59999999999999999999999999999999999999999999999997 99999
Q ss_pred EEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 308 IVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 308 lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
|||||||++++|||+||+++|+++ ++++++....++. ++... . ....+++|++||.|++||||+|+|+|.
T Consensus 284 LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 284 LVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGP-LFEGL----G-SELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred EEEEccCCchhcCHHHHHHHHHhCCCceeecccccccc-ccccc----c-cccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 999999999999999999999875 8999887655432 11110 0 345678999999998899999999985
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=549.65 Aligned_cols=298 Identities=37% Similarity=0.585 Sum_probs=266.1
Q ss_pred hcChHHHHHHHHHhCCH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecC---CC
Q 016730 72 YGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS---QV 147 (384)
Q Consensus 72 ~~~p~wl~~~l~~~~~~-~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~ 147 (384)
..+|.|++++|+..||. +++++|++++++++|.++|||++|++++++.+.|.+.|+.++++ +|++.++++... ..
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~-p~~~~g~~~~~~~~~~~ 80 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPI-PWCEEGFWIERDDEDAL 80 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeEC-CCCCceEEEecCccccC
Confidence 35899999999999996 68999999999999999999999999999999999999999998 899999986432 23
Q ss_pred CCCCCcccccceEEEeCCcCcchhhhc--CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 148 ~~~~~~~~~~G~~~~Qd~ss~l~~~~L--~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
.++.+|+|.+|.|++||+|||+++.+| ++++|++|||+||||||||+||+++|++.|.|+|+|++++|++.+++|++|
T Consensus 81 ~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 81 PLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 226 ~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
+|+.|+.+++.|+..+...+. ..||+||+||||||+|++||+|+++|.|+++++..++.+|++||.+|+++| |||
T Consensus 161 ~G~~nv~v~~~D~~~~~~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L----kpG 235 (470)
T PRK11933 161 CGVSNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPG 235 (470)
T ss_pred cCCCeEEEEeCchhhhhhhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 999999999999988754442 579999999999999999999999999999999999999999999999996 999
Q ss_pred cEEEEEeccCCccccHHHHHHHHhcC-C-CEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 306 GYIVYSTCSIMVTENEAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 306 G~lvYsTCSi~~~ENe~vv~~~l~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
|+|||||||++++|||+||+++|+++ + ++++++...+ +++.. .....+++|++||.+++||||+|+|+|.
T Consensus 236 G~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 236 GTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLF--PGAEK------ALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccc--ccccc------ccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 99999999999999999999999876 4 4455442111 11110 0113457999999999999999999985
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=516.43 Aligned_cols=301 Identities=25% Similarity=0.409 Sum_probs=269.0
Q ss_pred hhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecC
Q 016730 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (384)
Q Consensus 66 ~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 145 (384)
+.++..||+|.||+++|.+.||.++++++++++++++|+++|||++|++++++.+.|.+.|+.+++. +|++.++.+...
T Consensus 126 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 204 (431)
T PRK14903 126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPG-KHSPFSLIVRKL 204 (431)
T ss_pred hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEEC-CCCCceEEEcCC
Confidence 4578899999999999999999999999999999999999999999999999999999999999888 789988876543
Q ss_pred CCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 146 ~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
..++..+++|.+|++++||.+|++++.++++++|++|||+||||||||+++++++++.+.|+|+|++++|++.+++|+++
T Consensus 205 ~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 226 ~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
+|++++.+++.|+..++... .+.||+|++||||||+|+++++|+++|.++++++..++.+|+++|.+++++| |||
T Consensus 285 ~g~~~v~~~~~Da~~l~~~~-~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpG 359 (431)
T PRK14903 285 LKLSSIEIKIADAERLTEYV-QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL----EKG 359 (431)
T ss_pred cCCCeEEEEECchhhhhhhh-hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 99999999999998775333 3679999999999999999999999999999999999999999999999996 999
Q ss_pred cEEEEEeccCCccccHHHHHHHHhc-CCCEEeecCCCC---CCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEE
Q 016730 306 GYIVYSTCSIMVTENEAVIDYALKK-RDVKLVPCGLDF---GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVY 381 (384)
Q Consensus 306 G~lvYsTCSi~~~ENe~vv~~~l~~-~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~ 381 (384)
|+|||||||++++|||+||++||++ ++++++++.... +.++. + ...++|++|+. ++||||+|+|+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~P~~-~~dGFf~a~L~ 428 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGI-------W---DGYGFLMLPDE-TLTPFYVSVLR 428 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccc-------c---CCCcEEECcCC-CCCcEEEEEEE
Confidence 9999999999999999999998875 578877653111 11110 0 11237999985 79999999999
Q ss_pred ec
Q 016730 382 LD 383 (384)
Q Consensus 382 ~~ 383 (384)
|.
T Consensus 429 k~ 430 (431)
T PRK14903 429 KM 430 (431)
T ss_pred eC
Confidence 85
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=518.76 Aligned_cols=320 Identities=31% Similarity=0.470 Sum_probs=279.2
Q ss_pred HHHHHHHHHHhcccccccC----------CCHHH-----HHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCC
Q 016730 36 RIKEIVRVLSNFKDLSQKG----------TSRKE-----YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEK 100 (384)
Q Consensus 36 ri~~~v~~~~~~~~~~~~~----------r~~~~-----~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~ 100 (384)
=|+|+|++++.+......+ |..+. .-......++++||+|.||+++|.+.||.++++++++++++
T Consensus 96 avneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~ 175 (434)
T PRK14901 96 AVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQ 175 (434)
T ss_pred HHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCC
Confidence 4788888888776543331 11110 00111234788999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCc
Q 016730 101 PRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180 (384)
Q Consensus 101 ~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~ 180 (384)
++|+++|||++|++++++.+.|.+.|+.++++ +|++.++.+.....++..+|+|.+|++++||.+|++++.++++++|+
T Consensus 176 ~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~ 254 (434)
T PRK14901 176 PPSLDLRINPLRTSLEEVQAALAEAGITATPI-PGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGE 254 (434)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHCCCceEEC-CCCCCeEEecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcC
Confidence 99999999999999999999999999999988 79999988754334588999999999999999999999999999999
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCEEEEcCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLDAP 258 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~VllDaP 258 (384)
+|||+|||||+||+++++++++.|.|+|+|++++|++.+++|++++|++++.++++|+..++... ..+.||+|++|||
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaP 334 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAP 334 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCC
Confidence 99999999999999999999888899999999999999999999999999999999998765311 1368999999999
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEee
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVP 337 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~ 337 (384)
|||+|+++|+|+++|.++++++..++.+|+++|.+|+++| ||||+|||||||++++|||++|.++++++ ++++++
T Consensus 335 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----kpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~ 410 (434)
T PRK14901 335 CSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----KPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEP 410 (434)
T ss_pred CCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecC
Confidence 9999999999999999999999999999999999999996 99999999999999999999999998865 676543
Q ss_pred cCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 338 CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
. ..+++||.|++||||+|+|+|.
T Consensus 411 ~-----------------------~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 411 P-----------------------KQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred C-----------------------CCccCCCCCCCCcEEEEEEEeC
Confidence 1 0127999999999999999986
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-67 Score=501.71 Aligned_cols=281 Identities=43% Similarity=0.657 Sum_probs=246.6
Q ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCcccccc-EEEecCCCCCCCCcccccceEEEeCCcCcchhh
Q 016730 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG-LVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (384)
Q Consensus 94 ~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~ 172 (384)
||++++.++|+++|||++|++++++.+.|.+.|+.+++. +|.+.. ..+.....++..++.|++|+|++||.+|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-ccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 689999999999999999999999999999999999888 677776 334455678899999999999999999999999
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+|+|++|++|||+||||||||+|++++|.+.|.|+|+|++.+|+..+++|++|+|+.++.+++.|++.+........||+
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 99999999999999999999999999999899999999999999999999999999999998889887743333346999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~- 331 (384)
||+||||||+|+++|+|+++|.++++++..++.+|++||++|+++++..+||||+|||||||++++|||+||++||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999984333499999999999999999999999999876
Q ss_pred CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEE
Q 016730 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVY 381 (384)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~ 381 (384)
+++++++....+.+++..+ +...+++|++||.+++||||+|+||
T Consensus 240 ~~~l~~~~~~~~~~~~~~~------~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 240 DFELVPIPLPEPPPGFKSY------PIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp SEEEECCESSTCEEESSGG------CTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred CcEEEeccccccccccccc------cCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 8999987665544433322 3356789999999999999999997
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=504.16 Aligned_cols=324 Identities=29% Similarity=0.427 Sum_probs=275.4
Q ss_pred HHHHHHHHHhccccccc----------CCCHHHHHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEE
Q 016730 37 IKEIVRVLSNFKDLSQK----------GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICL 106 (384)
Q Consensus 37 i~~~v~~~~~~~~~~~~----------~r~~~~~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 106 (384)
|+|+|++++.+...... .|..+.+.+ ....++.+||+|.||+++|.+.|+ ++++++++++++++|+|+
T Consensus 91 inEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~-~~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 168 (426)
T TIGR00563 91 VAETVEGAKAIKRKGLKGLVNGVLRRFQREQEELLA-EFNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWL 168 (426)
T ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHhhcchhhcc-hhHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEE
Confidence 78899999887655443 122222111 124588899999999999999996 678899999999999999
Q ss_pred EEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEec
Q 016730 107 RTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186 (384)
Q Consensus 107 RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~c 186 (384)
|||+.|++++++.+.|.+.|+.+.+. +|.+.++.+ ..+..+..+++|.+|+|++||.+|++++.+|++++|++|||+|
T Consensus 169 Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlc 246 (426)
T TIGR00563 169 RINRTKHSRDEWLALLAEAGMKGFPH-DLAPDAVRL-ETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDAC 246 (426)
T ss_pred EEcCCcCCHHHHHHHHHhcCCceeeC-CCCCCeEEE-CCCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeC
Confidence 99999999999999999999998887 788888875 4455688999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC
Q 016730 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (384)
Q Consensus 187 agpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~ 265 (384)
||||+||++++++++ .++|+|+|++++|++.+++|++++|+.. +.+..+|+.....+...+.||+|++||||||+|++
T Consensus 247 ag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 247 AAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVI 325 (426)
T ss_pred CCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCccc
Confidence 999999999999987 6899999999999999999999999972 33355666554432234689999999999999999
Q ss_pred CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCC
Q 016730 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (384)
Q Consensus 266 ~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~ 344 (384)
+++|+++|.++++++.+++.+|+++|.+|+++| ||||+|||||||++++|||+||+++++++ +++++..+..
T Consensus 326 ~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L----kpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~--- 398 (426)
T TIGR00563 326 RRHPDIKWLRKPRDIAELAELQSEILDAIWPLL----KTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTP--- 398 (426)
T ss_pred ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCc---
Confidence 999999999999999999999999999999996 99999999999999999999999999866 6665432110
Q ss_pred CCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+. ...+++|++||.+++||||+|+|+|.
T Consensus 399 ~~-----------~~~~~~~~~P~~~~~dGff~a~l~k~ 426 (426)
T TIGR00563 399 EQ-----------VRDGGLQILPHAEEGDGFFYAKLIKK 426 (426)
T ss_pred cc-----------cCCCcEEECCCCCCCCCeEEEEEEeC
Confidence 00 01346899999999999999999984
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=488.44 Aligned_cols=324 Identities=30% Similarity=0.468 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHhccccccc----------CCCHHHHHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCC
Q 016730 34 QRRIKEIVRVLSNFKDLSQK----------GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRP 103 (384)
Q Consensus 34 ~~ri~~~v~~~~~~~~~~~~----------~r~~~~~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p 103 (384)
+.-|+|+|++++.+...+.. .+.++.+......+++++||+|.||+++|.+.|| +++.++++++++++|
T Consensus 93 ~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~ 171 (427)
T PRK10901 93 HAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPP 171 (427)
T ss_pred chHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCC
Confidence 34678999999887665443 1222322221234678899999999999999996 789999999999999
Q ss_pred eEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEE
Q 016730 104 ICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183 (384)
Q Consensus 104 ~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VL 183 (384)
+++|||++|++++++.+.|.+.|+.+++. +|.+.++.+ ..+.++..+++|++|++++||.+|++++.++++++|++||
T Consensus 172 ~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VL 249 (427)
T PRK10901 172 MWLRVNRRHHSRDAYLALLAEAGIEAFPH-AVGPDAIRL-ETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVL 249 (427)
T ss_pred eEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCeEEE-CCCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEE
Confidence 99999999999999999999999999988 799999876 4455688999999999999999999999999999999999
Q ss_pred EeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCC
Q 016730 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263 (384)
Q Consensus 184 D~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G 263 (384)
|+|||||++|+++++.+++ +.|+|+|+++++++.+++|++++|+. +.++++|+..++.+...++||.|++|||||++|
T Consensus 250 DlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G 327 (427)
T PRK10901 250 DACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQPFDRILLDAPCSATG 327 (427)
T ss_pred EeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCCCCEEEECCCCCccc
Confidence 9999999999999999865 79999999999999999999999986 678899998765443346799999999999999
Q ss_pred cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCC
Q 016730 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDF 342 (384)
Q Consensus 264 ~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~ 342 (384)
+++++|+++|.++++++.++...|+++|.+|+++| ||||++||||||++++|||++|..+++++ ++++++...
T Consensus 328 ~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L----kpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~-- 401 (427)
T PRK10901 328 VIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL----KPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT-- 401 (427)
T ss_pred ccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC--
Confidence 99999999999999999999999999999999996 99999999999999999999999888765 788766321
Q ss_pred CCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 343 GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+ ...++|++||.+++||||+|+|+|.
T Consensus 402 --~-------------~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 402 --P-------------QQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred --C-------------CCCceEECCCCCCCCCeEEEEEEEC
Confidence 0 1235899999999999999999984
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=482.54 Aligned_cols=332 Identities=29% Similarity=0.443 Sum_probs=285.1
Q ss_pred HHHHHHHHHHhcccccccC----------CCHHH---HHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCC
Q 016730 36 RIKEIVRVLSNFKDLSQKG----------TSRKE---YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPR 102 (384)
Q Consensus 36 ri~~~v~~~~~~~~~~~~~----------r~~~~---~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~ 102 (384)
=|+|+|++++.+..++..+ ++... -.......++++||+|.|++++|.+.||.+++.++++++++++
T Consensus 98 ~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~ 177 (444)
T PRK14902 98 AVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPP 177 (444)
T ss_pred eHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCC
Confidence 4667788777766544331 11100 0011123578899999999999999999999999999999999
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceE
Q 016730 103 PICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182 (384)
Q Consensus 103 p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~V 182 (384)
|+|+|||+.|.+++++.+.|.+.|+.+++. +|.+.++.+.. ..+..+++|.+|.+++||.+|++++.++++++|++|
T Consensus 178 ~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~V 254 (444)
T PRK14902 178 KASIRVNTLKISVEELIEKLEEEGYEVEES-LLSPEALVIEK--GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTV 254 (444)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHcCceeEEc-CCCCCeEEEeC--CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEE
Confidence 999999999999999999999999999888 89999988643 468899999999999999999999999999999999
Q ss_pred EEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~ 262 (384)
||+|||||++|+++++.+++.+.|+|+|+++.+++.+++|++++|+.++.++++|+..+...+. +.||+|++||||||+
T Consensus 255 LDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~ 333 (444)
T PRK14902 255 LDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGL 333 (444)
T ss_pred EEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCC
Confidence 9999999999999999986678999999999999999999999999999999999987653332 679999999999999
Q ss_pred CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCC
Q 016730 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLD 341 (384)
Q Consensus 263 G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~ 341 (384)
|+++++|+++|.+++.++..+..+|+++|.+|+++| ||||+|||||||++++|||.+|.++++++ +++++++..+
T Consensus 334 G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~ 409 (444)
T PRK14902 334 GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL----KKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHE 409 (444)
T ss_pred eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc----CCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccc
Confidence 999999999999999999999999999999999996 99999999999999999999999988876 6888876433
Q ss_pred CCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 342 FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
. ++.. ..+...+++|++||.+++||||+|+|+|.
T Consensus 410 ~--~~~~------~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 410 K--PDEL------VYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred c--cccc------cccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 2 1100 00123467999999999999999999985
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=477.47 Aligned_cols=330 Identities=24% Similarity=0.368 Sum_probs=274.3
Q ss_pred HHHHHHHHHHhcccccccC----------CCH---HHHHH--HhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCC
Q 016730 36 RIKEIVRVLSNFKDLSQKG----------TSR---KEYVQ--QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEK 100 (384)
Q Consensus 36 ri~~~v~~~~~~~~~~~~~----------r~~---~~~~~--~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~ 100 (384)
-|+|+|++++.+...+..+ +.. +++.. .....++.+||+|.||+++|.+.||++++.++++++++
T Consensus 98 ~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~ 177 (445)
T PRK14904 98 AVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQ 177 (445)
T ss_pred eHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCC
Confidence 3678888888776554431 111 11110 11235788999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCc
Q 016730 101 PRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180 (384)
Q Consensus 101 ~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~ 180 (384)
++|+++|||+++.+++++.+.|...|+.+.+. ++. ++.+ ... .....|.|..|.+++||++|++++.++++++|+
T Consensus 178 ~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~-~~~-~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~ 252 (445)
T PRK14904 178 APLFGFRINRLKTTPEKFLAAPADASVTFEKS-GLP--NFFL-SKD-FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGS 252 (445)
T ss_pred CCCceeEeCCCCCCHHHHHHHHHhCCCceEEc-Ccc--eEEE-ecc-ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999987765 443 4543 222 223338999999999999999999999999999
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|||+|||||+||+++++++++.+.|+|+|+++.|++.+++|++++|+.++.++++|+..+.. ...||+|++|||||
T Consensus 253 ~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 253 TVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---EEQPDAILLDAPCT 329 (445)
T ss_pred EEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---CCCCCEEEEcCCCC
Confidence 999999999999999999987778999999999999999999999999999999999987642 36799999999999
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecC
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCG 339 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~ 339 (384)
|+|+++|+|+++|.++++++..++..|.++|.+++++| ||||+|||+|||++++|||+||+++|+++ ++++++..
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~ 405 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL----KPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSP 405 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccc
Confidence 99999999999999999999999999999999999997 99999999999999999999999999876 67776542
Q ss_pred CCCCCCCcccccccccCCCcCCeeEEcCCCC-CCCceeEEEEEecC
Q 016730 340 LDFGRQGFVRFREHRFHPSLEKTRRFYPHVH-NMDGFFVAKVYLDL 384 (384)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~-~~dGFF~A~l~~~~ 384 (384)
... ++ .|.. .+...+++|++|+.+ ++||||+|+|+|.+
T Consensus 406 ~~l--~~--~~~~---~~~~~~~~~~~P~~~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 406 GSL--PE--PFHE---VAHPKGAILTLPGEHEGFDGGFAQRLRKNA 444 (445)
T ss_pred ccc--cc--cccc---ccCCCCcEEECCCCCCCCCcEEEEEEEecC
Confidence 211 11 1110 011235689999987 88999999999974
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-58 Score=436.70 Aligned_cols=263 Identities=50% Similarity=0.714 Sum_probs=226.1
Q ss_pred EEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEe
Q 016730 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185 (384)
Q Consensus 106 ~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~ 185 (384)
+|||++|++++++.+.|.+.|+.+++. . .+..+.+......+..+++|.+|+|++||.+|++++.+|++++|++|||+
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPW-C-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeec-C-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 699999999999999999999987654 2 33344443344468999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC
Q 016730 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (384)
Q Consensus 186 cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~ 265 (384)
|||||+||+++++++++.|.|+|+|+++.|++.+++|++++|+.++.+++.|+..++... +.||+||+||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~--~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV--PKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc--cCCCEEEEcCCCCCCccc
Confidence 999999999999999888899999999999999999999999999999999988765432 569999999999999999
Q ss_pred CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCC
Q 016730 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (384)
Q Consensus 266 ~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~ 344 (384)
+++|+++|.++++++..++..|+++|.+|+++| ||||+|||||||++++|||+||+++++++ ++.+++. .+.
T Consensus 157 ~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~---~~~ 229 (264)
T TIGR00446 157 RKDPSRKKNWSEEDIQEISALQKELIDSAFDAL----KPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELP---KGD 229 (264)
T ss_pred ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEecc---CCc
Confidence 999999999999999999999999999999996 99999999999999999999999999876 5665522 111
Q ss_pred CCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
+....+.. .....+|+|++||.|++||||+|+|+|
T Consensus 230 ~~~~~~~~---~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 230 EFFGANKG---KEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccccc---ccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 11111100 002356899999999999999999986
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=324.47 Aligned_cols=254 Identities=31% Similarity=0.477 Sum_probs=203.6
Q ss_pred HHHHhCC-HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHH-----------cC--CcccCCCccccccEEEec--
Q 016730 81 ALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN-----------RG--VNLDPLSKWSKVGLVVYD-- 144 (384)
Q Consensus 81 ~l~~~~~-~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-----------~g--~~~~~~~~~~~~~~~~~~-- 144 (384)
+..+.|. .+++.++.+.+..+.|.+.|+.......+++...+++ +| ++.....+|+|.++.+..
T Consensus 31 ~~l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~ 110 (375)
T KOG2198|consen 31 KALDHFDKEDEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDV 110 (375)
T ss_pred HHHhcCcchHHHHHHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcC
Confidence 3455665 7899999999999999999987665544443333222 34 322222378877654321
Q ss_pred ------CCCCCCCCccc-----ccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccC---CceEEEEe
Q 016730 145 ------SQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANE 210 (384)
Q Consensus 145 ------~~~~~~~~~~~-----~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D 210 (384)
...++...++| ..|.|+.||++||+++.+|+++||++||||||||||||..|.+.+.. .|.|+|+|
T Consensus 111 ~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND 190 (375)
T KOG2198|consen 111 KLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVAND 190 (375)
T ss_pred cccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecc
Confidence 11123344444 57899999999999999999999999999999999999999887753 36999999
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-------CCCCCCEEEEcCCCCCCCcCCCCchhhcc-CCHHHHHH
Q 016730 211 MKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQK 282 (384)
Q Consensus 211 ~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------~~~~fD~VllDaPCSg~G~~~r~p~~~~~-~~~~~i~~ 282 (384)
.+..|+..+...++++...+..+.+.|+..++... ....||+||||+||||.|+++++|++.-. |....-..
T Consensus 191 ~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~ 270 (375)
T KOG2198|consen 191 VDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALG 270 (375)
T ss_pred cCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccC
Confidence 99999999999999998888888888887765442 23579999999999999999999999765 77777678
Q ss_pred HHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC--CCEEeec
Q 016730 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR--DVKLVPC 338 (384)
Q Consensus 283 l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~--~~~l~~~ 338 (384)
|..+|.+||.+++++| |+||+|||||||++|.|||+||+.+|+.. .++++..
T Consensus 271 L~~LQ~~iL~rgl~lL----k~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~ 324 (375)
T KOG2198|consen 271 LHALQLRILRRGLRLL----KVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDV 324 (375)
T ss_pred ChHHHHHHHHHHHHHh----cCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceee
Confidence 9999999999999997 99999999999999999999999999875 4667665
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=300.65 Aligned_cols=287 Identities=30% Similarity=0.397 Sum_probs=227.2
Q ss_pred hCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc----cCC----CccccccEEEecCCCCCCCCcccc
Q 016730 85 MFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL----DPL----SKWSKVGLVVYDSQVPIGATPEYM 156 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 156 (384)
.-+.+...++....+.+.|.|+|+||++.+.++....|..+++.. .|. .+..+ .+.++..+..+...+.|+
T Consensus 113 k~~~~~~~~l~~t~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~-~ll~~~~~n~i~~~~ly~ 191 (413)
T KOG2360|consen 113 KRKVKSLRELKLTMKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVE-NLIIFPPSNFIVEHELYK 191 (413)
T ss_pred hhhHHHHHHhhccCCCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccch-hhcccCCCcceeeccccc
Confidence 334455666665455799999999999999999999887776651 111 01111 122223344577789999
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
.|++++||.+|+++++.|+|.+|.+|+|+||+||.||+|++..+.+.|+++|+|.++.|.+.++..+...|+.++....+
T Consensus 192 ~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~ 271 (413)
T KOG2360|consen 192 NGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEG 271 (413)
T ss_pred cCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhh--ccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK--TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~--~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+...+.....+.+..||+||+|||+|+..|.-.+. -....+.+..|...|-.++.+|+.+ ..--+++|||||
T Consensus 272 df~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~f-----p~~k~vvystcs 346 (413)
T KOG2360|consen 272 DFLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTF-----PNLKRLVYSTCS 346 (413)
T ss_pred cccCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcC-----Cchhheeeecch
Confidence 988754333447789999999999999987755444 3446788999999999999999985 455799999999
Q ss_pred CCccccHHHHHHHHhcC-C-CEEee--cCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 315 IMVTENEAVIDYALKKR-D-VKLVP--CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 315 i~~~ENe~vv~~~l~~~-~-~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
++.+|||+||+..|... + +++.+ +...|...|...| +..+.|+|-.|....++|||+|.+.|+
T Consensus 347 ~~reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~------~~~e~~lr~~p~~~~~~gffva~fer~ 413 (413)
T KOG2360|consen 347 LHREENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTF------SGAEHCLRASPKSTLTIGFFVALFERV 413 (413)
T ss_pred hhhhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccc------cccccceecccCCCCcceEEEEEeecC
Confidence 99999999999877654 3 34444 3223333443333 224678999999999999999998874
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-18 Score=168.36 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=123.5
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.-..++++|+|..|......+..+ .+|.+|||+|||+|+.+++++ ..+...|+++|+|+.+++.+++|++.+|+.
T Consensus 195 dl~~g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa--~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~ 269 (396)
T PRK15128 195 DIQGGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQEALDIARQNVELNKLD 269 (396)
T ss_pred ecccccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 345688999999998776665544 358899999999999887654 344569999999999999999999999985
Q ss_pred --eEEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 230 --NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 230 --~v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
++.++++|+.++...+ .+++||.|++|||+... +...+........+++..|.++| +||
T Consensus 270 ~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-------------~k~~l~~~~~~y~~l~~~a~~lL----k~g 332 (396)
T PRK15128 270 LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-------------NKSQLMGACRGYKDINMLAIQLL----NPG 332 (396)
T ss_pred CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-------------ChHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 6899999998753222 23589999999996332 22344444455677888899886 999
Q ss_pred cEEEEEeccCCc--cccHHHHHHHHhcC--CCEEee
Q 016730 306 GYIVYSTCSIMV--TENEAVIDYALKKR--DVKLVP 337 (384)
Q Consensus 306 G~lvYsTCSi~~--~ENe~vv~~~l~~~--~~~l~~ 337 (384)
|.|+++|||-+. ++=.++|....... .++++.
T Consensus 333 G~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 333 GILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999554 44455666555544 345544
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=162.38 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=135.3
Q ss_pred cEEEecCCCC--CCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHH
Q 016730 139 GLVVYDSQVP--IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216 (384)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl 216 (384)
.+.+.+..+. +.-..+.++|+|..|..+...+...+. |.+|||+||.+||.|.|.|. ++..+|+++|+|...+
T Consensus 179 ~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al 253 (393)
T COG1092 179 EVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRAL 253 (393)
T ss_pred cEEEEeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHH
Confidence 3444444332 233457789999999988777666553 99999999999999987665 3555999999999999
Q ss_pred HHHHHHHHHcCCce--EEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHH
Q 016730 217 KSLTANLHRMGVTN--TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292 (384)
Q Consensus 217 ~~l~~n~~r~g~~~--v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~ 292 (384)
+.+++|++.+|++. +.++++|+..+-... .+.+||+|++||| .+.+++.......+-..+|+.
T Consensus 254 ~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-------------sF~r~k~~~~~~~rdy~~l~~ 320 (393)
T COG1092 254 EWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPP-------------SFARSKKQEFSAQRDYKDLND 320 (393)
T ss_pred HHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCc-------------ccccCcccchhHHHHHHHHHH
Confidence 99999999999853 789999998764332 3458999999999 566666666778888899999
Q ss_pred HHHHchhccCCCCcEEEEEeccCCccccH--HHHHHHHhcC--CCEEe
Q 016730 293 AAIDMVDANSKSGGYIVYSTCSIMVTENE--AVIDYALKKR--DVKLV 336 (384)
Q Consensus 293 ~a~~~L~~~lkpGG~lvYsTCSi~~~ENe--~vv~~~l~~~--~~~l~ 336 (384)
.+.++| +|||+++.||||-+-...+ +.|...+... .++++
T Consensus 321 ~~~~iL----~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 321 LALRLL----APGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHHHc----CCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 999996 9999999999999887764 4444333333 44444
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=129.88 Aligned_cols=138 Identities=27% Similarity=0.330 Sum_probs=115.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~ 246 (384)
..+....|.|+||++++|+|||+|+.|..++ ++.+.++|+|+|.++++++.+++|++++|++|+.++.+|+-+.....
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~- 100 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL- 100 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-
Confidence 4456677899999999999999999999999 66778999999999999999999999999999999999997764432
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
..||+|++- |.|- ...+|+.+|..| ||||+||...-++ ||+...-.
T Consensus 101 -~~~daiFIG----Gg~~----------------------i~~ile~~~~~l----~~ggrlV~naitl---E~~~~a~~ 146 (187)
T COG2242 101 -PSPDAIFIG----GGGN----------------------IEEILEAAWERL----KPGGRLVANAITL---ETLAKALE 146 (187)
T ss_pred -CCCCEEEEC----CCCC----------------------HHHHHHHHHHHc----CcCCeEEEEeecH---HHHHHHHH
Confidence 379999983 2221 245899999996 9999999877666 99988888
Q ss_pred HHhcCCC-EEeecCC
Q 016730 327 ALKKRDV-KLVPCGL 340 (384)
Q Consensus 327 ~l~~~~~-~l~~~~~ 340 (384)
.+++.++ +++.+..
T Consensus 147 ~~~~~g~~ei~~v~i 161 (187)
T COG2242 147 ALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHcCCceEEEEEe
Confidence 8888887 7766543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-14 Score=131.97 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=105.0
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
+.+|||+|||+|..++.++...++ ..|+++|+|+..++.+++|++.+|. .++++|..........++||.|++|||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhcCCCEeEEEECCC
Confidence 468999999999999999987654 5899999999999999999998874 567788765321111257999999999
Q ss_pred CCCCCcCCC-CchhhccCCHHHH---HHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 259 CSGTGVISK-DESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 259 CSg~G~~~r-~p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
|..++.+.+ .|+++.......+ .+....+++++..+.++| ||||.+++.+.. ..-++ |..++++.++
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L----~~gG~l~l~~~~---~~~~~-v~~~l~~~g~ 233 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL----APGGHLLVETSE---RQAPL-AVEAFARAGL 233 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc---chHHH-HHHHHHHCCC
Confidence 998887654 5565544333322 244567889999999986 999999998753 22334 4445555544
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=129.95 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=141.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCC-CHHHH---HHHHHH--cCCcccCCC---ccccccEEEecCC
Q 016730 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT-RRRDL---ADVLIN--RGVNLDPLS---KWSKVGLVVYDSQ 146 (384)
Q Consensus 76 ~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~-~~~~~---~~~L~~--~g~~~~~~~---~~~~~~~~~~~~~ 146 (384)
.|..++|.+ +..+++-++.......+.+++.|..+. +.+++ .+.+.. .|..+.-+. ++. +..+..+
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~--~~~~~~~- 83 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFW--GLDFKVS- 83 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEc--CcEEEEC-
Confidence 455666655 777888888888888888999887665 44333 222222 333221110 111 1111100
Q ss_pred CCCCCCcccccceEEEeCCcC-cchhh---hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH
Q 016730 147 VPIGATPEYMAGFYMLQSASS-FLPVM---ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 147 ~~~~~~~~~~~G~~~~Qd~ss-~l~~~---~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n 222 (384)
.|.+.. .+.+ .++-. .+...++.+|||+|||+|..+..++...+ ...|+++|+++..++.+++|
T Consensus 84 ----------~~~lip-r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 84 ----------PGVLIP-RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRN 151 (275)
T ss_pred ----------CCceeC-CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHH
Confidence 111111 1111 11111 22345778999999999999999998875 37899999999999999999
Q ss_pred HHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCC-CCchhhccCCHHHH---HHHHHHHHHHHHHHHHch
Q 016730 223 LHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS-KDESVKTSKSLEDI---QKCSYLQKQLILAAIDMV 298 (384)
Q Consensus 223 ~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~-r~p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L 298 (384)
+......++.+++.|...... .++||.|++||||...+.+. ..++++.......+ ......+++++..+.++|
T Consensus 152 ~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L 228 (275)
T PRK09328 152 AKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL 228 (275)
T ss_pred HHhCCCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc
Confidence 984444578898998855321 36899999999998877654 23333321111111 123456778999999986
Q ss_pred hccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 299 ~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+|||++++.+. . .. .+.+..++++.++.
T Consensus 229 ----k~gG~l~~e~g-~--~~-~~~~~~~l~~~gf~ 256 (275)
T PRK09328 229 ----KPGGWLLLEIG-Y--DQ-GEAVRALLAAAGFA 256 (275)
T ss_pred ----ccCCEEEEEEC-c--hH-HHHHHHHHHhCCCc
Confidence 99999988542 2 22 23455566655554
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=119.83 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=90.8
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
|.+|||+|||+|..+.++++.. ...++++|+++..++.++.|+.+.++ .++.++++|..........++||.|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 6799999999999999888875 47999999999999999999999998 46899999998876445568999999999
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+......... ..+....+++++.++| ||||.+++.+|.
T Consensus 79 P~~~~~~~~~~--------------~~~~~~~~~~~~~~~L----~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKAA--------------LRRLYSRFLEAAARLL----KPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHE----EEEEEEEEEEEG
T ss_pred CCccccccchh--------------hHHHHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 98644211110 0114557889999986 999999999874
|
... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=150.48 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=122.8
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.-..+.++|.|..|.....++..+. +|.+|||+|||+|+.+++++.. +...|+++|+|+..++.+++|++.+|+.
T Consensus 513 ~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~ 587 (702)
T PRK11783 513 NLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLS 587 (702)
T ss_pred EcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 3345778999999988766655543 4789999999999999988874 3357999999999999999999999986
Q ss_pred --eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 230 --NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 230 --~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
++.++++|+.++.... .++||.|++|||+.+.+- ...++....+.+.+++..+.++| +|||.
T Consensus 588 ~~~v~~i~~D~~~~l~~~-~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL----~~gG~ 651 (702)
T PRK11783 588 GRQHRLIQADCLAWLKEA-REQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLL----RPGGT 651 (702)
T ss_pred ccceEEEEccHHHHHHHc-CCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHc----CCCCE
Confidence 6899999987653222 368999999999765431 11122234455778888889886 99999
Q ss_pred EEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 308 lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
+++++|+-+.... ...+.+.++.+..+
T Consensus 652 l~~~~~~~~~~~~----~~~~~~~g~~~~~i 678 (702)
T PRK11783 652 LYFSNNKRGFKMD----EEGLAKLGLKAEEI 678 (702)
T ss_pred EEEEeCCccCChh----HHHHHhCCCeEEEE
Confidence 9999998766654 33444455555443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=123.81 Aligned_cols=133 Identities=21% Similarity=0.324 Sum_probs=103.1
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~ 246 (384)
.++...+++.+|++|||+|||+|..+..++..++..++|+++|+++.+++.+++|++++|+ .++.++++|+.+.....
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~- 108 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI- 108 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-
Confidence 3444556788999999999999999999988876668999999999999999999999994 67888888887643222
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
.+.||+|+++.. .. ....++..+.+.| ||||++++.+|++ |+...+..
T Consensus 109 ~~~~D~V~~~~~---~~----------------------~~~~~l~~~~~~L----kpgG~lv~~~~~~---~~~~~~~~ 156 (198)
T PRK00377 109 NEKFDRIFIGGG---SE----------------------KLKEIISASWEII----KKGGRIVIDAILL---ETVNNALS 156 (198)
T ss_pred CCCCCEEEECCC---cc----------------------cHHHHHHHHHHHc----CCCcEEEEEeecH---HHHHHHHH
Confidence 257999998531 00 1135678888875 9999999988866 55566666
Q ss_pred HHhcCCC
Q 016730 327 ALKKRDV 333 (384)
Q Consensus 327 ~l~~~~~ 333 (384)
.+++.++
T Consensus 157 ~l~~~g~ 163 (198)
T PRK00377 157 ALENIGF 163 (198)
T ss_pred HHHHcCC
Confidence 7776664
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=123.71 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=111.3
Q ss_pred cCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc
Q 016730 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 166 ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~ 245 (384)
.+.+....+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++..++ ++.+..+|.....
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--- 79 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc---
Confidence 34555566666678899999999999999888753 2799999999999999999998887 5788888876543
Q ss_pred CCCCCCEEEEcCCCCCC-CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 246 GLNTVDRVLLDAPCSGT-GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~-G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
.++||.|+++||+-.. +...+++...+.+.. .......+.++|..+.++| ||||++++++++. .+...+
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~L----k~gG~~~~~~~~~---~~~~~~ 149 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDG--GKDGRKVIDRFLDELPEIL----KEGGRVQLIQSSL---NGEPDT 149 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhc--CCchHHHHHHHHHhHHHhh----CCCCEEEEEEecc---CChHHH
Confidence 2589999999998433 222222222111110 0011234677888888886 9999999998776 345666
Q ss_pred HHHHhcCCCEEeec
Q 016730 325 DYALKKRDVKLVPC 338 (384)
Q Consensus 325 ~~~l~~~~~~l~~~ 338 (384)
..++++.+++...+
T Consensus 150 ~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 150 FDKLDERGFRYEIV 163 (179)
T ss_pred HHHHHhCCCeEEEE
Confidence 67777777766543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-15 Score=142.34 Aligned_cols=146 Identities=20% Similarity=0.222 Sum_probs=104.8
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.-..+.++|.|..|.....++.... .|.+|||++|.+||.|++.+. ++..+|+++|.|...++.+++|++.+|++
T Consensus 98 ~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 98 DLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp ESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred EcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3345788999999999888766653 588999999999999987554 34458999999999999999999999975
Q ss_pred --eEEEEecCCCCcccc-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 230 --NTIVCNYDGNELPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 230 --~v~~~~~D~~~~~~~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
.+.++..|+.++-.. ...++||.|++|||.-+ ++..++ .+-..+++..++++| +|||
T Consensus 173 ~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-------------k~~~~~---~~~y~~L~~~a~~ll----~~gG 232 (286)
T PF10672_consen 173 LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA-------------KSKFDL---ERDYKKLLRRAMKLL----KPGG 232 (286)
T ss_dssp CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE-------------SSTCEH---HHHHHHHHHHHHHTE----EEEE
T ss_pred ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC-------------CCHHHH---HHHHHHHHHHHHHhc----CCCC
Confidence 688999998764221 12468999999999432 122222 345678999999987 9999
Q ss_pred EEEEEeccCCcccc
Q 016730 307 YIVYSTCSIMVTEN 320 (384)
Q Consensus 307 ~lvYsTCSi~~~EN 320 (384)
.|+.||||-+-..+
T Consensus 233 ~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 233 LLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEE--TTS-HH
T ss_pred EEEEEcCCcccCHH
Confidence 99999999887765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=127.30 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=109.6
Q ss_pred ceEEEeCCcCcchhhhc---CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Q 016730 158 GFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L---~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~ 234 (384)
|.|..|..+ .+.+..+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|+++.|+ ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 445555443 3333333 4678899999999999999888775 235899999999999999999999887 57788
Q ss_pred ecCCCCcccccCCCCCCEEEEcCCC---CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 235 NYDGNELPKVLGLNTVDRVLLDAPC---SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VllDaPC---Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
++|..... ..+.||.|++|||. +..+...+.|+..|....+. ...+..++..+.++| ||||++++.
T Consensus 90 ~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~L----k~gG~l~~~ 158 (223)
T PRK14967 90 RGDWARAV---EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALL----APGGSLLLV 158 (223)
T ss_pred ECchhhhc---cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhc----CCCcEEEEE
Confidence 88876532 23689999999874 44454455555555433222 234567888899986 999999986
Q ss_pred eccCCccccHHHHHHHHhcCCCE
Q 016730 312 TCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 312 TCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+.+.. +-..+...++..++.
T Consensus 159 ~~~~~---~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 159 QSELS---GVERTLTRLSEAGLD 178 (223)
T ss_pred Eeccc---CHHHHHHHHHHCCCC
Confidence 55543 222233444555543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-13 Score=128.42 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=96.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
++++.+|||+|||+|..+..++...++ ..|+|+|+|+..++.+++|++++|+. ++.++++|+.... ...+||.|+
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---~~~~fD~Iv 194 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---PGRKYDLIV 194 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---CCCCccEEE
Confidence 345679999999999999999987754 68999999999999999999999985 6889999986432 235799999
Q ss_pred EcCCCCCCCcCCCCc-hhhccCCHHHH----HHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 255 LDAPCSGTGVISKDE-SVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 255 lDaPCSg~G~~~r~p-~~~~~~~~~~i----~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|||+...+.+..-+ +++ ..+... ......++.++..+.+.| +|||+++.-+.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L----~~gG~l~~e~g 252 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHL----NENGVLVVEVG 252 (284)
T ss_pred ECCCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEEC
Confidence 999998776543322 221 111111 122356778999999986 99999986554
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=134.42 Aligned_cols=133 Identities=19% Similarity=0.227 Sum_probs=102.4
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+.++++|++|||.|||+|+.+..++. + ...|+|+|+++.++..++.|++.+|+.++.+..+|+.+++.. .+.||.
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--~~~~D~ 251 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--SESVDA 251 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--cCCCCE
Confidence 34678899999999999998776544 3 368999999999999999999999998888889999987642 368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~ 332 (384)
|++||||........ .....++.++|..+.+.| ||||+++|.+++-..- ...++..+
T Consensus 252 Iv~dPPyg~~~~~~~-------------~~~~~l~~~~l~~~~r~L----k~gG~lv~~~~~~~~~------~~~~~~~g 308 (329)
T TIGR01177 252 IATDPPYGRSTTAAG-------------DGLESLYERSLEEFHEVL----KSEGWIVYAVPTRIDL------ESLAEDAF 308 (329)
T ss_pred EEECCCCcCcccccC-------------CchHHHHHHHHHHHHHHc----cCCcEEEEEEcCCCCH------HHHHhhcC
Confidence 999999854322111 123356788999999986 9999999998865322 23455556
Q ss_pred C
Q 016730 333 V 333 (384)
Q Consensus 333 ~ 333 (384)
+
T Consensus 309 ~ 309 (329)
T TIGR01177 309 R 309 (329)
T ss_pred c
Confidence 6
|
This family is found exclusively in the Archaea. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=110.89 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=84.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
||.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++++.+.+. .++.+++.|+ ..... ..+.||.|+++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-FLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-TSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-cCCCCCEEEEC
Confidence 688999999999999999999654 47899999999999999999976665 6799999999 22111 12679999986
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
. .+...+ . .. ..++++|+++.+.| +|||++++++|
T Consensus 78 ~-~~~~~~-----------~-----~~-~~~~~~l~~~~~~L----~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 G-FTLHFL-----------L-----PL-DERRRVLERIRRLL----KPGGRLVINTC 112 (112)
T ss_dssp S-GSGGGC-----------C-----HH-HHHHHHHHHHHHHE----EEEEEEEEEE-
T ss_pred C-Cccccc-----------c-----ch-hHHHHHHHHHHHhc----CCCcEEEEEEC
Confidence 4 100001 0 11 34567788888886 99999999998
|
... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=126.12 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=119.9
Q ss_pred cceEEEeCCc-------CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 157 AGFYMLQSAS-------SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 157 ~G~~~~Qd~s-------s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
....++|+.. ++|.+.+..+....+|||+|||.|..++.+|++..+ .+|+++|+++...+.+++|++.+++.
T Consensus 16 ~~~~I~q~~~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~ 94 (248)
T COG4123 16 KQFFIIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLE 94 (248)
T ss_pred cceEEEeCCCccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcch
Confidence 3445566653 456666666777899999999999999999998765 79999999999999999999998885
Q ss_pred -eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC-CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 230 -NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 230 -~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~-~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
++.+++.|...+.+.....+||.|+|+||.-..|.. ..+|.-...+.. ....-.++++.|.++| ||||+
T Consensus 95 ~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e-----~~~~le~~i~~a~~~l----k~~G~ 165 (248)
T COG4123 95 ERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE-----ITLDLEDLIRAAAKLL----KPGGR 165 (248)
T ss_pred hceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhh-----hcCCHHHHHHHHHHHc----cCCCE
Confidence 599999999988766655679999999999777765 222211111110 1112345677777775 99999
Q ss_pred EEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 308 IVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 308 lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+.+ +++.|.-.-+-..+++.+++
T Consensus 166 l~~----V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 166 LAF----VHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred EEE----EecHHHHHHHHHHHHhcCCC
Confidence 976 47777765555666665443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=124.76 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=77.3
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
....++++++|++|||+|||+|..|..++.+.+..+.|+++|+++..++.+++|++++|++++.++++|+...... ..
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--~~ 145 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--LA 145 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--cC
Confidence 3455678899999999999999999999998876688999999999999999999999999999999998764322 26
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.||+|++++++
T Consensus 146 ~fD~Ii~~~~~ 156 (215)
T TIGR00080 146 PYDRIYVTAAG 156 (215)
T ss_pred CCCEEEEcCCc
Confidence 89999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-14 Score=124.48 Aligned_cols=126 Identities=21% Similarity=0.229 Sum_probs=97.0
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
|+++.+.+..+...++.+|||+|||+|..+.+++...+. ..|+++|+++..++.+++|++.+++.++.+...|......
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 456666677776667889999999999999999987653 5799999999999999999999999888898999876433
Q ss_pred ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 244 ~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
..+||.|+++||...-+ .......++++..|.++| ||||.++...-+
T Consensus 96 ---~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~L----k~~G~l~lv~~~ 142 (170)
T PF05175_consen 96 ---DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYL----KPGGRLFLVINS 142 (170)
T ss_dssp ---TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHE----EEEEEEEEEEET
T ss_pred ---ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhc----cCCCEEEEEeec
Confidence 37899999999932111 112345678899999986 999999665433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=120.69 Aligned_cols=106 Identities=20% Similarity=0.307 Sum_probs=82.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc--cccCCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVD 251 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~--~~~~~~~fD 251 (384)
+++++|++|||+|||+|+.+.+++..++ .|.|+|+|+++.+++.+.+++++. .|+.++.+|+.... .... +.||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhcc-ccCC
Confidence 6778999999999999999999999986 689999999999999888887654 67888889987531 1112 5699
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|++|.+ +|+ ....+|..+.++| ||||+++.+
T Consensus 144 ~i~~d~~---------~p~---------------~~~~~L~~~~r~L----KpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVA---------QPN---------------QAEIAIDNAEFFL----KDGGYLLLA 175 (226)
T ss_pred EEEECCC---------Chh---------------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 9998865 111 0123567888875 999999984
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=118.50 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=101.0
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
....++...+.+.++.+|||+|||+|..+..++...+ .++|+++|+++.+++.+++|++++++.++.+.++|+...
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--- 93 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--- 93 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---
Confidence 3334455567777899999999999999999988764 479999999999999999999999988888888887421
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
. ...||+|+++..- + .+ ..++..+.+.| +|||++++.... .+|...+
T Consensus 94 ~-~~~~D~v~~~~~~---~---------------~~-------~~~l~~~~~~L----k~gG~lv~~~~~---~~~~~~~ 140 (187)
T PRK08287 94 L-PGKADAIFIGGSG---G---------------NL-------TAIIDWSLAHL----HPGGRLVLTFIL---LENLHSA 140 (187)
T ss_pred c-CcCCCEEEECCCc---c---------------CH-------HHHHHHHHHhc----CCCeEEEEEEec---HhhHHHH
Confidence 2 2579999986320 0 01 23667777875 999999986543 4666777
Q ss_pred HHHHhcCCCEE
Q 016730 325 DYALKKRDVKL 335 (384)
Q Consensus 325 ~~~l~~~~~~l 335 (384)
..++++.+++.
T Consensus 141 ~~~l~~~g~~~ 151 (187)
T PRK08287 141 LAHLEKCGVSE 151 (187)
T ss_pred HHHHHHCCCCc
Confidence 77777776543
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-13 Score=124.36 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=96.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.+..+.+.+|++|||+|||+|-.|.++++..+ .|+|+++|+|+.+|+.+++.+...|..++.++.+|+..+| +++.+
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f~D~s 119 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDNS 119 (238)
T ss_pred HHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--CCCCc
Confidence 44555566899999999999999999999998 6999999999999999999999999988999999999998 56799
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
||+|.+ +.|+ | .... ..+.|+++.+.| ||||+++.. .+++-++.
T Consensus 120 FD~vt~-----~fgl-r---------------nv~d-~~~aL~E~~RVl----KpgG~~~vl--e~~~p~~~ 163 (238)
T COG2226 120 FDAVTI-----SFGL-R---------------NVTD-IDKALKEMYRVL----KPGGRLLVL--EFSKPDNP 163 (238)
T ss_pred cCEEEe-----eehh-h---------------cCCC-HHHHHHHHHHhh----cCCeEEEEE--EcCCCCch
Confidence 999987 2221 1 1111 134688888886 999977653 44544553
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-12 Score=121.07 Aligned_cols=114 Identities=23% Similarity=0.296 Sum_probs=83.3
Q ss_pred Ccchhhh------cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 167 SFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~------L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
|-|++.+ +.+++|++|||+|||||++|.|++..+...+.|+|+|+++.+++.+.+.++.. .|+.++..|++.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 4566555 35789999999999999999999999987899999999987776666554432 577888899875
Q ss_pred ccc-ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHH-HHHHHHHchhccCCCCcEEEEE
Q 016730 241 LPK-VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ-LILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 241 ~~~-~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~-iL~~a~~~L~~~lkpGG~lvYs 311 (384)
... ....+.||+|++|.. .|+ |.+ ++.+|.++| ||||+++.+
T Consensus 193 p~~y~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~L----KpGG~~vI~ 236 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFL----KNGGHFIIS 236 (293)
T ss_pred hhhhhcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhc----cCCCEEEEE
Confidence 311 111257999999984 121 232 344666665 999999874
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=118.83 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=107.0
Q ss_pred cccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEE
Q 016730 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIV 233 (384)
Q Consensus 155 ~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~ 233 (384)
|+.+--++--+.|.+.+..+++.||++|||+|+|+|..|+.||...++.|+|+.+|+.+++++.+++|++..|+.+ +.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 5666666666777888999999999999999999999999999999888999999999999999999999999987 888
Q ss_pred EecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEe
Q 016730 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YST 312 (384)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsT 312 (384)
...|..+.... ..||+|++|.| +| -+.|.++.+.| ||||.++ |+.
T Consensus 151 ~~~Dv~~~~~~---~~vDav~LDmp---------~P------------------W~~le~~~~~L----kpgg~~~~y~P 196 (256)
T COG2519 151 KLGDVREGIDE---EDVDAVFLDLP---------DP------------------WNVLEHVSDAL----KPGGVVVVYSP 196 (256)
T ss_pred Eeccccccccc---cccCEEEEcCC---------Ch------------------HHHHHHHHHHh----CCCcEEEEEcC
Confidence 88998876432 58999999998 22 24688888886 9999876 665
Q ss_pred cc
Q 016730 313 CS 314 (384)
Q Consensus 313 CS 314 (384)
|.
T Consensus 197 ~v 198 (256)
T COG2519 197 TV 198 (256)
T ss_pred CH
Confidence 53
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-13 Score=125.50 Aligned_cols=130 Identities=22% Similarity=0.282 Sum_probs=86.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.++..+.+++|++|||+|||+|-.|..++...+..+.|+++|+|+.+++.+++++...+..++.++.+|+.++|. +++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~--~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF--PDN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S---TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC--CCC
Confidence 455667788999999999999999999998887778999999999999999999999999899999999999873 458
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
+||.|.+ +.|+ +.-|+ +.+.|+++.++| ||||+++....| .-+|. .+..+.
T Consensus 116 sfD~v~~-----~fgl-rn~~d----------------~~~~l~E~~RVL----kPGG~l~ile~~--~p~~~-~~~~~~ 166 (233)
T PF01209_consen 116 SFDAVTC-----SFGL-RNFPD----------------RERALREMYRVL----KPGGRLVILEFS--KPRNP-LLRALY 166 (233)
T ss_dssp -EEEEEE-----ES-G-GG-SS----------------HHHHHHHHHHHE----EEEEEEEEEEEE--B-SSH-HHHHHH
T ss_pred ceeEEEH-----HhhH-HhhCC----------------HHHHHHHHHHHc----CCCeEEEEeecc--CCCCc-hhhcee
Confidence 9999986 3332 11111 234678888886 999999876543 34453 444433
Q ss_pred h
Q 016730 329 K 329 (384)
Q Consensus 329 ~ 329 (384)
+
T Consensus 167 ~ 167 (233)
T PF01209_consen 167 K 167 (233)
T ss_dssp H
T ss_pred e
Confidence 3
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-12 Score=117.51 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=103.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||+|||+|..+..++...++ ..|+++|+++.+++.++.++...|+.++.+.++|+.... ..++||.|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---PGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---cCCceeEEEECC
Confidence 3568999999999999999987754 689999999999999999999999988999999987632 237899999999
Q ss_pred CCCCCCcCCCC-chhhccCCHHHH---HHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 258 PCSGTGVISKD-ESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 258 PCSg~G~~~r~-p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
|+...+..... ++++.......+ .........++..+.+.| +|||.+++.. +. ...+.+..++++.++
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L----~~gG~~~~~~-~~---~~~~~~~~~l~~~gf 234 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL----KPGGWLLLEI-GY---DQGEAVRALFEAAGF 234 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc----ccCCEEEEEE-Cc---cHHHHHHHHHHhCCC
Confidence 99887654321 111110000000 011233456888888886 9999998853 22 223345555666666
Q ss_pred EEee
Q 016730 334 KLVP 337 (384)
Q Consensus 334 ~l~~ 337 (384)
+.+.
T Consensus 235 ~~v~ 238 (251)
T TIGR03534 235 ADVE 238 (251)
T ss_pred CceE
Confidence 5443
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-12 Score=111.11 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=95.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
+++.+|||+|||+|..+..++......++++++|+|+.+++.+++++++++++++.+.++|..+++..+. +.||.|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 5688999999999999999996555568999999999999999999999999999999999999653222 689999998
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
.++- +. .....++..+.++| ++||+++.+.+. ...|.++.+.
T Consensus 81 ~~l~------------~~----------~~~~~~l~~~~~~l----k~~G~~i~~~~~-~~~~~~~~~~ 122 (152)
T PF13847_consen 81 GVLH------------HF----------PDPEKVLKNIIRLL----KPGGILIISDPN-HNDELPEQLE 122 (152)
T ss_dssp STGG------------GT----------SHHHHHHHHHHHHE----EEEEEEEEEEEE-HSHHHHHHHH
T ss_pred Cchh------------hc----------cCHHHHHHHHHHHc----CCCcEEEEEECC-hHHHHHHHHH
Confidence 7641 11 12245778888886 999999988887 3344444444
|
... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=118.47 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=75.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
....++++++|++|||+|||+|..|..++.+++..++|+++|+++..++.++++++++|+.++.++++|+..... ...
T Consensus 67 ~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--~~~ 144 (212)
T PRK13942 67 IMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--ENA 144 (212)
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--cCC
Confidence 344566788999999999999999999999987668999999999999999999999999999999999876432 236
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
.||+|+++.
T Consensus 145 ~fD~I~~~~ 153 (212)
T PRK13942 145 PYDRIYVTA 153 (212)
T ss_pred CcCEEEECC
Confidence 899999864
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=128.77 Aligned_cols=88 Identities=23% Similarity=0.167 Sum_probs=73.3
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc-cc-cCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KV-LGLNT 249 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~-~~-~~~~~ 249 (384)
.++.+.++++|||+|||+|..++.++... ..|+|+|+++.+++.+++|++.+|+.|+.++.+|+.... .. .....
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34456788999999999999999998763 479999999999999999999999999999999987532 11 12357
Q ss_pred CCEEEEcCCCCCC
Q 016730 250 VDRVLLDAPCSGT 262 (384)
Q Consensus 250 fD~VllDaPCSg~ 262 (384)
||+|++|||.+|.
T Consensus 363 ~D~vi~dPPr~G~ 375 (431)
T TIGR00479 363 PDVLLLDPPRKGC 375 (431)
T ss_pred CCEEEECcCCCCC
Confidence 9999999997654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=125.25 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=72.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+...++.+|||+|||+|..+..++.. ...|+|+|+++.+++.+++|++.+|+.++.+..+|+..+.... .+.||.|
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~~~~D~V 244 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-GEVPDLV 244 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-CCCCeEE
Confidence 34346789999999999999999884 2689999999999999999999999988999999997654322 2479999
Q ss_pred EEcCCCCCCC
Q 016730 254 LLDAPCSGTG 263 (384)
Q Consensus 254 llDaPCSg~G 263 (384)
++|||++|.+
T Consensus 245 v~dPPr~G~~ 254 (315)
T PRK03522 245 LVNPPRRGIG 254 (315)
T ss_pred EECCCCCCcc
Confidence 9999987654
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=103.08 Aligned_cols=110 Identities=27% Similarity=0.385 Sum_probs=88.2
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+.+.++++|||+|||+|..+..+++..++ +.|+++|+++.+++.++++++.+++.++.++..|+....... ..+||
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D 90 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-LPEPD 90 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-cCCCC
Confidence 3456677889999999999999999998765 799999999999999999999999988888888876532222 25899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|+++.+ + . ...++++.+.+.| ||||+++.+.
T Consensus 91 ~v~~~~~----------~--------~-------~~~~~l~~~~~~L----k~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGS----------G--------G-------LLQEILEAIWRRL----RPGGRIVLNA 122 (124)
T ss_pred EEEECCc----------c--------h-------hHHHHHHHHHHHc----CCCCEEEEEe
Confidence 9998642 0 0 1236888999986 9999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=116.78 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=107.7
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D 237 (384)
|.-..|+..+.+....+.+++|++|||+|||+|..|..++...+ .+.|+++|+|+.+++.+++|++++|+.++.++++|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 33456777777777788888999999999999999999887654 47999999999999999999999999889999998
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
+....... ...+|.|++|.. . . ..+++..+.+.| +|||++++.+++.
T Consensus 99 ~~~~~~~~-~~~~d~v~~~~~----~------------~----------~~~~l~~~~~~L----kpgG~li~~~~~~-- 145 (196)
T PRK07402 99 APECLAQL-APAPDRVCIEGG----R------------P----------IKEILQAVWQYL----KPGGRLVATASSL-- 145 (196)
T ss_pred hHHHHhhC-CCCCCEEEEECC----c------------C----------HHHHHHHHHHhc----CCCeEEEEEeecH--
Confidence 86421111 135788887642 0 0 135678888875 9999999998864
Q ss_pred cccHHHHHHHHh---cCCCEEeecC
Q 016730 318 TENEAVIDYALK---KRDVKLVPCG 339 (384)
Q Consensus 318 ~ENe~vv~~~l~---~~~~~l~~~~ 339 (384)
|.-..+...++ ..+++.+.+.
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 146 -EGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred -HHHHHHHHHHHhcCCCCceEEEEE
Confidence 33233333343 2366666553
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=118.04 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=94.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+.+|||+|||+|..+..++...++ ..|+|+|+|+.+++.+++|++++|+.+ +.++.+|..... ...+||.|++||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~~~~fDlIvsNP 190 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---AGQKIDIIVSNP 190 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---cCCCccEEEECC
Confidence 368999999999999999988753 689999999999999999999999965 899999876532 224799999999
Q ss_pred CCCCCCcCCCCchhhccCCHHHH---HHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+-...-+...|++........+ .......++++..+.+.| +|||.+++-++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L----~~gG~l~~e~g~ 246 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL----KPNGFLVCEIGN 246 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc----cCCCEEEEEECc
Confidence 98666533222222211111110 112346788999999986 999999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-12 Score=121.99 Aligned_cols=117 Identities=29% Similarity=0.401 Sum_probs=88.9
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCC--c
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNE--L 241 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~--~ 241 (384)
+.+.+....+++.||++||++|+|+|+.|..|+..+++.|+|+.+|++++|++.+++|++++|+. ++.+.+.|... +
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 33456788899999999999999999999999999988999999999999999999999999995 78999999853 2
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccC-CCCcEEE-EEec
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS-KSGGYIV-YSTC 313 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l-kpGG~lv-YsTC 313 (384)
.... ...||.|++|.| +|. . .+.++.+. | |+||+++ ||.|
T Consensus 107 ~~~~-~~~~DavfLDlp---------~Pw---~---------------~i~~~~~~----L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 107 DEEL-ESDFDAVFLDLP---------DPW---E---------------AIPHAKRA----LKKPGGRICCFSPC 148 (247)
T ss_dssp STT--TTSEEEEEEESS---------SGG---G---------------GHHHHHHH----E-EEEEEEEEEESS
T ss_pred cccc-cCcccEEEEeCC---------CHH---H---------------HHHHHHHH----HhcCCceEEEECCC
Confidence 1111 267999999999 232 1 45666666 5 7999886 6655
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=127.61 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=62.6
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc------
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------ 244 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~------ 244 (384)
..++++.++ +|||++||.|..|+.+|... .+|+|+|+++..++.+++|++.+|++|+.++.+++.++...
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKARE 265 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-G
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHH
Confidence 345566666 89999999999999988764 57999999999999999999999999999998776543211
Q ss_pred --------cCCCCCCEEEEcCCCCCCC
Q 016730 245 --------LGLNTVDRVLLDAPCSGTG 263 (384)
Q Consensus 245 --------~~~~~fD~VllDaPCSg~G 263 (384)
.....+|.|++|||-+|.+
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 1123689999999988876
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-12 Score=114.81 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=73.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+++++|++|||+|||+|..+..++++++..++|+++|+++..++.+++|++++|+. ++.+.++|+...... ..+
T Consensus 65 ~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--~~~ 142 (205)
T PRK13944 65 CELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--HAP 142 (205)
T ss_pred HHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--CCC
Confidence 45567889999999999999999999999876689999999999999999999999986 488999998764322 268
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
||+|+++.+
T Consensus 143 fD~Ii~~~~ 151 (205)
T PRK13944 143 FDAIIVTAA 151 (205)
T ss_pred ccEEEEccC
Confidence 999999865
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-12 Score=121.72 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=99.8
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
.+|||+|||+|..+..++...++ ..|+|+|+|+..++.+++|++++|+. ++.++++|+.... ...+||.|++|||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l---~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL---PGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC---CCCCccEEEECCC
Confidence 68999999999999999987653 78999999999999999999999985 5899999976432 2257999999999
Q ss_pred CCCCCcCCC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 259 CSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 259 CSg~G~~~r-------~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
+.+.+.+.. .|...+.-... .....++++..+.+.| +|||++++-+ .. +.+.+..++.+.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~d----Gl~~~~~i~~~a~~~L----~pgG~l~~E~---g~--~~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDD----GLDLVRRILAEAPDYL----TEDGVLVVEV---GN--SRVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCc----hHHHHHHHHHHHHHhc----CCCCEEEEEE---Cc--CHHHHHHHHhhC
Confidence 988765432 22222211111 2256677999999986 9999998643 22 223355555554
Q ss_pred CC
Q 016730 332 DV 333 (384)
Q Consensus 332 ~~ 333 (384)
++
T Consensus 278 ~~ 279 (307)
T PRK11805 278 PF 279 (307)
T ss_pred CC
Confidence 43
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=110.07 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=100.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+.-.|..|+|+|||+|..++..+.+ +..+|+|+|+|++.++.+++|+.+ +..++.+++.|..++. ..||.|
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----~~~dtv 112 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----GKFDTV 112 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----CccceE
Confidence 34557889999999999977654443 447999999999999999999999 4457999999998865 679999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
+.||| .|+.+||+|. .+|..|++. +.+|| |+|..-+.+-+..+.+..|.
T Consensus 113 imNPP---FG~~~rhaDr-----------------~Fl~~Ale~--------s~vVY---siH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 113 IMNPP---FGSQRRHADR-----------------PFLLKALEI--------SDVVY---SIHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred EECCC---CccccccCCH-----------------HHHHHHHHh--------hheEE---EeeccccHHHHHHHHHhcCC
Confidence 99999 6877888774 367888886 47888 57888899999888777764
Q ss_pred E
Q 016730 334 K 334 (384)
Q Consensus 334 ~ 334 (384)
.
T Consensus 162 ~ 162 (198)
T COG2263 162 T 162 (198)
T ss_pred e
Confidence 3
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=116.23 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=96.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~fD~VllD 256 (384)
++.+|||+|||+|..+..+++..++ +.|+|+|+|+++++.++++++..++.++.++++|+ ..++..+..+.||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5789999999999999999988754 68999999999999999999999998899999998 555432334689999997
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH---hcCCC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL---KKRDV 333 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l---~~~~~ 333 (384)
.|. | |........ ...+..+|..+.++| ||||+++++|+ |+..+..++ +..++
T Consensus 119 ~~~---------p---~~~~~~~~~--~~~~~~~l~~i~~~L----kpgG~l~i~~~------~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 119 FPD---------P---WPKKRHHKR--RLVQPEFLALYARKL----KPGGEIHFATD------WEGYAEYMLEVLSAEGG 174 (202)
T ss_pred CCC---------C---CCCcccccc--ccCCHHHHHHHHHHc----CCCCEEEEEcC------CHHHHHHHHHHHHhCcc
Confidence 542 1 111000000 012456788888886 99999998874 445554444 34454
Q ss_pred EE
Q 016730 334 KL 335 (384)
Q Consensus 334 ~l 335 (384)
+.
T Consensus 175 ~~ 176 (202)
T PRK00121 175 FL 176 (202)
T ss_pred cc
Confidence 43
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=109.71 Aligned_cols=157 Identities=16% Similarity=0.104 Sum_probs=106.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCcccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKV 244 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~~~~ 244 (384)
+.+....+...++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...++.+ +.++..|.....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence 344455555678899999999999999998887 3689999999999999999999988876 778888876532
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
....||.|++++|+...+-.....+ .+......-.........++..+.++| ||||.+++..+++.. .+-+
T Consensus 87 -~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~L----k~gG~~~~~~~~~~~---~~~l 157 (188)
T PRK14968 87 -RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYL----KPGGRILLLQSSLTG---EDEV 157 (188)
T ss_pred -cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhc----CCCeEEEEEEcccCC---HHHH
Confidence 2247999999999754331111000 000000000001233456788888886 999999988877643 2334
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
..++++.++++..
T Consensus 158 ~~~~~~~g~~~~~ 170 (188)
T PRK14968 158 LEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHCCCeeee
Confidence 4566666766543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-12 Score=127.96 Aligned_cols=87 Identities=26% Similarity=0.292 Sum_probs=73.3
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTV 250 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~~~~f 250 (384)
.+.+.+|++|||+|||+|..+..++... ..|+|+|+|+.+++.+++|++.+|++++.+.++|+...... +....|
T Consensus 292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 292 WLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred HhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 3466789999999999999999988864 58999999999999999999999999999999998754211 223579
Q ss_pred CEEEEcCCCCCC
Q 016730 251 DRVLLDAPCSGT 262 (384)
Q Consensus 251 D~VllDaPCSg~ 262 (384)
|+|++|||++|.
T Consensus 369 D~Vi~dPPr~g~ 380 (443)
T PRK13168 369 DKVLLDPPRAGA 380 (443)
T ss_pred CEEEECcCCcCh
Confidence 999999998654
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-12 Score=127.61 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=91.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~ 248 (384)
+...++..++++|||+.||.|++|+++|.. ..+|+|+|+++..++.+++|++.+|+.|+.+..+|+..+...+ .+.
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 345567778999999999999999999964 3589999999999999999999999999999999998875433 345
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.||.|++|||-+|.+ .++++...++ +|- ++||++|
T Consensus 362 ~~d~VvvDPPR~G~~------------------------~~~lk~l~~~-----~p~-~IvYVSC 396 (432)
T COG2265 362 KPDVVVVDPPRAGAD------------------------REVLKQLAKL-----KPK-RIVYVSC 396 (432)
T ss_pred CCCEEEECCCCCCCC------------------------HHHHHHHHhc-----CCC-cEEEEeC
Confidence 899999999988876 2345555554 554 6899999
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=117.74 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=73.5
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+|+++||++|||+|||+|..|..++.+.+..+.|+++|+++...+.+++|++++|+.|+.+..+|+...... ...
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~--~ap 141 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE--EAP 141 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG--G-S
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc--CCC
Confidence 345678999999999999999999999999988889999999999999999999999999999999998764322 368
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
||+|++.+.|
T Consensus 142 fD~I~v~~a~ 151 (209)
T PF01135_consen 142 FDRIIVTAAV 151 (209)
T ss_dssp EEEEEESSBB
T ss_pred cCEEEEeecc
Confidence 9999998764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=108.32 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=93.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+|.+|||+|||+|..+..++...+ .++|+|+|.++.+++.++++++++|+.++.++++|+.++.. .++||.|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---cCCccEEEehh
Confidence 488999999999999988876543 47899999999999999999999999889999999987632 36899999863
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc---CCCE
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK---RDVK 334 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~---~~~~ 334 (384)
.+ . ...++..+.++| +|||+++.. +....+..+..+.++ .+++
T Consensus 118 ----~~------------~----------~~~~~~~~~~~L----kpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 118 ----LA------------S----------LNVLLELTLNLL----KVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ----hh------------C----------HHHHHHHHHHhc----CCCCEEEEE----cCCCcHHHHHHHHHhhhhcCce
Confidence 00 0 123455566665 999999865 345556666666655 4777
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
.++.
T Consensus 164 ~~~~ 167 (181)
T TIGR00138 164 PLEV 167 (181)
T ss_pred Eeec
Confidence 7665
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=111.22 Aligned_cols=138 Identities=16% Similarity=0.265 Sum_probs=112.1
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCC-----ceEEEEeCCHHHHHHHHHHHHHcCCc---eEEEEecCCCCc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----GLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNEL 241 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~-----g~V~a~D~~~~rl~~l~~n~~r~g~~---~v~~~~~D~~~~ 241 (384)
.+..|+|.+|++|||+|+|+|-.|.-|....++. ++|+.+|+|+++|...+++.++.++. .+.++++|+.++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 3556788899999999999999999999988764 79999999999999999999887774 378999999999
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
| +++..||...+ +.|+ |. ....| +.|+.|.+.| ||||++. |-.++.+|.
T Consensus 172 p--Fdd~s~D~yTi-----afGI-RN---------------~th~~-k~l~EAYRVL----KpGGrf~---cLeFskv~~ 220 (296)
T KOG1540|consen 172 P--FDDDSFDAYTI-----AFGI-RN---------------VTHIQ-KALREAYRVL----KPGGRFS---CLEFSKVEN 220 (296)
T ss_pred C--CCCCcceeEEE-----ecce-ec---------------CCCHH-HHHHHHHHhc----CCCcEEE---EEEcccccc
Confidence 8 55689999865 3443 21 11122 3679999986 9999887 889999998
Q ss_pred HHHHHHHhcCCCEEeec
Q 016730 322 AVIDYALKKRDVKLVPC 338 (384)
Q Consensus 322 ~vv~~~l~~~~~~l~~~ 338 (384)
+.+++|.+...+.++|+
T Consensus 221 ~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPV 237 (296)
T ss_pred HHHHHHHHhhhhhhhch
Confidence 88999988877766664
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-11 Score=111.07 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=91.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.+++|.+|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++++.++.++.++++|+..++. ..++
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 114 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--DDNS 114 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--CCCC
Confidence 34456778899999999999999999999876668999999999999999999999999889999999987652 3478
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
||.|+++-. +...+ . ..++|..+.+.| +|||+++..+
T Consensus 115 fD~V~~~~~------l~~~~------~----------~~~~l~~~~~~L----k~gG~l~~~~ 151 (231)
T TIGR02752 115 FDYVTIGFG------LRNVP------D----------YMQVLREMYRVV----KPGGKVVCLE 151 (231)
T ss_pred ccEEEEecc------cccCC------C----------HHHHHHHHHHHc----CcCeEEEEEE
Confidence 999997532 11111 1 124678888875 9999998654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=108.82 Aligned_cols=121 Identities=20% Similarity=0.169 Sum_probs=93.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+|.+|||+|||+|..+..++...+ .++|+++|+++.+++.++++++.+|++++.+.++|+.+++. .++||.|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEEEcc
Confidence 488999999999999998888665 47999999999999999999999999889999999987654 36899999852
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
.+ .. ..++..+.+.| ||||++++...+. ....+..+.+..|..+.
T Consensus 121 ----~~------------~~----------~~~l~~~~~~L----kpGG~lv~~~~~~----~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 ----VA------------SL----------SDLVELCLPLL----KPGGRFLALKGRD----PEEEIAELPKALGGKVE 165 (187)
T ss_pred ----cc------------CH----------HHHHHHHHHhc----CCCeEEEEEeCCC----hHHHHHHHHHhcCceEe
Confidence 00 01 23667777875 9999999876553 33344555555565544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=109.66 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=80.4
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
.|.++-|----.....+|++++|++||++|||+|..|..||++.+ +|+++|+.+.-.+.+++|++.+|+.||.+.++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 455655532223346678999999999999999999999999974 89999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCEEEEcCC
Q 016730 237 DGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaP 258 (384)
|+..-- .....||+|++.+.
T Consensus 128 DG~~G~--~~~aPyD~I~Vtaa 147 (209)
T COG2518 128 DGSKGW--PEEAPYDRIIVTAA 147 (209)
T ss_pred CcccCC--CCCCCcCEEEEeec
Confidence 998642 22378999999765
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=107.33 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=85.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc------cccCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~------~~~~~~ 248 (384)
.+++|++|||+|||||+.+.+++......++|+++|+++.+ +..++.+++.|..+.. .....+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 45789999999999999999999987666799999999864 2345677778876532 112346
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+||+|++|+++...|... ...... ...+.+++..+++.| +|||+++... ..+++-++++..+
T Consensus 98 ~~D~V~~~~~~~~~g~~~----------~~~~~~-~~~~~~~l~~~~~~L----kpgG~lvi~~--~~~~~~~~~l~~l 159 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWD----------IDHLRS-IDLVELALDIAKEVL----KPKGNFVVKV--FQGEEIDEYLNEL 159 (188)
T ss_pred CccEEEcCCCCCCCCCcc----------ccHHHH-HHHHHHHHHHHHHHc----cCCCEEEEEE--ccCccHHHHHHHH
Confidence 799999997654444321 111111 234677889999986 9999998753 3333334555443
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=109.91 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=71.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.++++++|||+|||+|..|..++.+. +.|+++|+++.+++.++++++++|+.++.+..+|+..... ..+.
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 144 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP--AYAP 144 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--cCCC
Confidence 3455778899999999999999998888774 4799999999999999999999999999999999865321 2268
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
||+|+++++|
T Consensus 145 fD~I~~~~~~ 154 (212)
T PRK00312 145 FDRILVTAAA 154 (212)
T ss_pred cCEEEEccCc
Confidence 9999998764
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=115.79 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=100.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+++.+|||+|||+|..+..++...+ ...|+|+|+|+.+++.+++|++++|. ++.++++|...... ....+||.|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l-~~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM-PSEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc-ccCCCccEEEE
Confidence 34567999999999999988887654 37899999999999999999999987 68888999865321 11257999999
Q ss_pred cCCCCCCCcCCC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 256 DAPCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 256 DaPCSg~G~~~r-------~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
|||....+-... .|...+.-. .+.-...++++..+.+.| +|||.+++.. .. ...+-|..++
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG----~dGL~~yr~Ii~~a~~~L----kpgG~lilEi---G~-~Q~e~V~~ll 393 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDF----SDGLSCIRTLAQGAPDRL----AEGGFLLLEH---GF-DQGAAVRGVL 393 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCC----CchHHHHHHHHHHHHHhc----CCCcEEEEEE---Cc-cHHHHHHHHH
Confidence 999866553221 122222111 112234667888888875 9999987533 22 3334455555
Q ss_pred hcCCCEEe
Q 016730 329 KKRDVKLV 336 (384)
Q Consensus 329 ~~~~~~l~ 336 (384)
+..++..+
T Consensus 394 ~~~Gf~~v 401 (423)
T PRK14966 394 AENGFSGV 401 (423)
T ss_pred HHCCCcEE
Confidence 55565443
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-11 Score=117.21 Aligned_cols=122 Identities=24% Similarity=0.310 Sum_probs=97.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~ 248 (384)
.+.+..+++|+.|||-.||+||.... |.+++ ..++++|++.+++.-++.|++.+|+....+... |+++++ ++..
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiE-agl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l~~~ 263 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIE-AGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--LRDN 263 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHh-hhhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--CCCC
Confidence 34455689999999999999997554 44554 689999999999999999999999988766666 999988 4445
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.||.|.+|||+--+-. .....+..+..++|+.+.+.| |+||++|+.+-
T Consensus 264 ~vdaIatDPPYGrst~-------------~~~~~l~~Ly~~~le~~~evL----k~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTK-------------IKGEGLDELYEEALESASEVL----KPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCcccc-------------cccccHHHHHHHHHHHHHHHh----hcCcEEEEecC
Confidence 7999999999622211 111226678889999999986 99999999876
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=118.56 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=95.7
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
|.+|.+....+......+|||+|||+|..+..+++..+. ..|+++|+|+.+++.+++|+++.++. ..+...|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~- 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI- 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc-
Confidence 334444455555444568999999999999999987653 68999999999999999999999886 355667765421
Q ss_pred ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc
Q 016730 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 244 ~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
.+.||.|++|||-- .|. . .. ...-.+++..+.+.| ||||.|++...+..+.|
T Consensus 259 ---~~~fDlIvsNPPFH-~g~-------~--~~-------~~~~~~~i~~a~~~L----kpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 259 ---KGRFDMIISNPPFH-DGI-------Q--TS-------LDAAQTLIRGAVRHL----NSGGELRIVANAFLPYP 310 (342)
T ss_pred ---CCCccEEEECCCcc-CCc-------c--cc-------HHHHHHHHHHHHHhc----CcCCEEEEEEeCCCChH
Confidence 26899999999931 110 0 00 112356788889886 99999999999988866
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-11 Score=112.91 Aligned_cols=135 Identities=17% Similarity=0.248 Sum_probs=92.8
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|||+|||+|..++.++...++ ..|+|+|+|+..++.+++|++++|+.++.++..|..... . ++||.|++|||+=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~-~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---R-GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---C-CceeEEEeCCCCC
Confidence 7999999999999998887764 699999999999999999999999866666665654322 1 4899999999973
Q ss_pred CCC-------cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCC
Q 016730 261 GTG-------VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (384)
Q Consensus 261 g~G-------~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~ 332 (384)
-.- +++..|.....-.. ..-...++++..+.+.+ +|||.++.- ++. ...+. |..++.+.+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~----dGl~~~~~i~~~a~~~l----~~~g~l~le-~g~--~q~~~-v~~~~~~~~ 254 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGG----DGLEVYRRILGEAPDIL----KPGGVLILE-IGL--TQGEA-VKALFEDTG 254 (280)
T ss_pred CCcccccChhhhccCHHHHHccCc----cHHHHHHHHHHhhHHHc----CCCcEEEEE-ECC--CcHHH-HHHHHHhcC
Confidence 322 11223322222112 22346677899998886 998877643 333 22334 444444444
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=113.46 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=88.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH---cCCceEEEEecCCCCcccccCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR---MGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r---~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
...+.++++++|||+|||+|..+..+++..+..+.|+|+|+|+.+++.++++... .+..++.++++|+..++. ++
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--~~ 143 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--DD 143 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--CC
Confidence 4456677899999999999999988888876557999999999999999877642 234678999999988763 34
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
++||.|++.- + +..-+ . ..++|.++.+.| ||||+++.++.+-
T Consensus 144 ~sfD~V~~~~-----~-l~~~~------d----------~~~~l~ei~rvL----kpGG~l~i~d~~~ 185 (261)
T PLN02233 144 CYFDAITMGY-----G-LRNVV------D----------RLKAMQEMYRVL----KPGSRVSILDFNK 185 (261)
T ss_pred CCEeEEEEec-----c-cccCC------C----------HHHHHHHHHHHc----CcCcEEEEEECCC
Confidence 7899998621 1 11111 1 234688888885 9999999887653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.1e-11 Score=116.88 Aligned_cols=122 Identities=19% Similarity=0.364 Sum_probs=98.4
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+....+..+||+|||+|..+.++|...++ ..++|+|+++.++..+.+++.+.|++|+.++++|+..+...+..+.||.|
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 34456789999999999999999999754 78999999999999999999999999999999999876444556899999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++.-|+ | |.+.+. .++ .+..+|..+.++| +|||.+...|.+..
T Consensus 197 ~lnFPd---------P---W~KkrH--RRl--v~~~fL~e~~RvL----kpGG~l~l~TD~~~ 239 (390)
T PRK14121 197 FVHFPV---------P---WDKKPH--RRV--ISEDFLNEALRVL----KPGGTLELRTDSEL 239 (390)
T ss_pred EEeCCC---------C---ccccch--hhc--cHHHHHHHHHHHc----CCCcEEEEEEECHH
Confidence 998764 2 222221 222 2577888888886 99999999997653
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-10 Score=103.19 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=82.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc------cccCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLNTV 250 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~------~~~~~~~f 250 (384)
++|.+|||+|||||+.+..+++..+..+.|+|+|+++- .++.++.++++|+.... ..+..++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 57889999999999999999999877789999999881 23456889999998753 11234789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
|.|++|+...-+| +|. .+..........+|..+.++| ||||+++..+ +..+....+-..+
T Consensus 119 D~V~S~~~~~~~g----~~~-------~d~~~~~~~~~~~L~~~~~~L----kpGG~~vi~~---~~~~~~~~~l~~l 178 (209)
T PRK11188 119 QVVMSDMAPNMSG----TPA-------VDIPRAMYLVELALDMCRDVL----APGGSFVVKV---FQGEGFDEYLREI 178 (209)
T ss_pred CEEecCCCCccCC----ChH-------HHHHHHHHHHHHHHHHHHHHc----CCCCEEEEEE---ecCcCHHHHHHHH
Confidence 9999986211122 111 111111222356788888875 9999998754 4445543333333
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.3e-11 Score=118.25 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=69.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+..++.+|||+|||+|..++.++.. ...|+|+|+++..++.+++|++.+|++++.+.++|+..+.... ...||.|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 3346789999999999999988854 3589999999999999999999999999999999987653221 14699999
Q ss_pred EcCCCCC
Q 016730 255 LDAPCSG 261 (384)
Q Consensus 255 lDaPCSg 261 (384)
+|||-.|
T Consensus 306 ~DPPr~G 312 (374)
T TIGR02085 306 VNPPRRG 312 (374)
T ss_pred ECCCCCC
Confidence 9999653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=108.85 Aligned_cols=113 Identities=22% Similarity=0.261 Sum_probs=89.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
...+++|++|||+|||+|..+..++..++..++|+++|+++.+++.++++...+|+.++.+..+|+..++. ..+.||.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--~~~~fD~ 149 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--ADNSVDV 149 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--CCCceeE
Confidence 34567899999999999988888888777667999999999999999999999999899998999877652 3368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|+.+.- +...|+ ..+++..++++| ||||+++.+.-
T Consensus 150 Vi~~~v------~~~~~d----------------~~~~l~~~~r~L----kpGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCV------INLSPD----------------KERVFKEAFRVL----KPGGRFAISDV 184 (272)
T ss_pred EEEcCc------ccCCCC----------------HHHHHHHHHHHc----CCCcEEEEEEe
Confidence 998632 111111 134788888886 99999998753
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-11 Score=114.78 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=73.0
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++++|++++.++.+|+....... ..||
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--~~fD 151 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--APYD 151 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc--CCcc
Confidence 34568899999999999999999999988766789999999999999999999999999999999987654322 5799
Q ss_pred EEEEcCC
Q 016730 252 RVLLDAP 258 (384)
Q Consensus 252 ~VllDaP 258 (384)
+|+++..
T Consensus 152 ~Ii~~~g 158 (322)
T PRK13943 152 VIFVTVG 158 (322)
T ss_pred EEEECCc
Confidence 9999743
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-11 Score=108.44 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=88.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~VllD 256 (384)
.+.+|||+|||+|..+..++...++ +.|+|+|+++.+++.+++++++.|+.|+.++++|+..++.. ...+.||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4568999999999999999988754 78999999999999999999999999999999999765422 233589999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|. |..+-...... -.+..++..+.+.| ||||.|.++|
T Consensus 95 ~pd---------pw~k~~h~~~r-----~~~~~~l~~~~r~L----kpgG~l~~~t 132 (194)
T TIGR00091 95 FPD---------PWPKKRHNKRR-----ITQPHFLKEYANVL----KKGGVIHFKT 132 (194)
T ss_pred CCC---------cCCCCCccccc-----cCCHHHHHHHHHHh----CCCCEEEEEe
Confidence 762 21110000000 11356788888886 9999998877
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=114.49 Aligned_cols=124 Identities=9% Similarity=0.008 Sum_probs=92.5
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc---eEEEEecCCCC
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNE 240 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~---~v~~~~~D~~~ 240 (384)
|.++.+....+....+.+|||+|||+|..+..+++..+ ..+|+++|+|+..++.+++|++.++.. ++.+...|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 45566655666555567999999999999999998865 479999999999999999999988753 67887788754
Q ss_pred cccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 241 ~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.. ...+||.|+++||.---..+ +.. .-.+++..+.+.| +|||.|....
T Consensus 293 ~~---~~~~fDlIlsNPPfh~~~~~----------~~~-------ia~~l~~~a~~~L----kpGG~L~iV~ 340 (378)
T PRK15001 293 GV---EPFRFNAVLCNPPFHQQHAL----------TDN-------VAWEMFHHARRCL----KINGELYIVA 340 (378)
T ss_pred cC---CCCCEEEEEECcCcccCccC----------CHH-------HHHHHHHHHHHhc----ccCCEEEEEE
Confidence 22 23579999999996321111 111 1245788888886 9999998875
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=108.84 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=91.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc--
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-- 245 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~-- 245 (384)
+...++...++.+|||+|+|.|.-++.++..++..|+|+++|+++++++.+++|+++.|+. ++.++.+|+.+....+
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 3344455566789999999999999999998887799999999999999999999999986 5899999997652211
Q ss_pred --CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 --GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 --~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..++||.|++|++ + ......+..++++| +|||.++.-.+
T Consensus 139 ~~~~~~fD~VfiDa~-------------k------------~~y~~~~~~~~~ll----~~GG~ii~dn~ 179 (234)
T PLN02781 139 NDPKPEFDFAFVDAD-------------K------------PNYVHFHEQLLKLV----KVGGIIAFDNT 179 (234)
T ss_pred CCCCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCeEEEEEcC
Confidence 1258999999986 1 12234677778875 99999987554
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-11 Score=112.13 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=96.7
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccc
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~ 243 (384)
...++...++...+..+|||+|++.|.-|++++..++..|.|+++|.++++.+.+++|+++.|+. ++.++.+|+.+...
T Consensus 105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK 184 (278)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 33445555566667789999999999999999999887889999999999999999999999997 69999999876432
Q ss_pred cc----CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 244 VL----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 244 ~~----~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.+ ..++||.|++|++ | ......++.++++| +|||.+|.-..-.
T Consensus 185 ~l~~~~~~~~FD~VFIDa~-------------K------------~~Y~~y~e~~l~lL----~~GGvIV~DNvL~ 231 (278)
T PLN02476 185 SMIQNGEGSSYDFAFVDAD-------------K------------RMYQDYFELLLQLV----RVGGVIVMDNVLW 231 (278)
T ss_pred HHHhcccCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCcEEEEecCcc
Confidence 11 1258999999997 1 22355677778875 9999998765533
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=116.92 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=99.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
++.+|||+|||+|..+..++...++ ..|+|+|+|+..++.+++|++++|+. ++.++.+|..... ..++||.|++|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~---~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI---EKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC---cCCCccEEEEC
Confidence 4568999999999999988887654 79999999999999999999999985 5888888875421 23589999999
Q ss_pred CCCCCCCcC--------CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 257 APCSGTGVI--------SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 257 aPCSg~G~~--------~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
||.....-. ...|...+.-..+ .....++++..+.+.| +|||.+++. +.. .. .+.|..++
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~d----Gl~~~~~il~~a~~~L----~~gG~l~lE-ig~--~q-~~~v~~~~ 281 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEED----GLQAYFIIAENAKQFL----KPNGKIILE-IGF--KQ-EEAVTQIF 281 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCcc----HHHHHHHHHHHHHHhc----cCCCEEEEE-ECC--ch-HHHHHHHH
Confidence 998765432 1123332222222 2245677888888886 999999764 332 22 33444444
Q ss_pred hcCCCE
Q 016730 329 KKRDVK 334 (384)
Q Consensus 329 ~~~~~~ 334 (384)
.+.++.
T Consensus 282 ~~~g~~ 287 (506)
T PRK01544 282 LDHGYN 287 (506)
T ss_pred HhcCCC
Confidence 444443
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=102.57 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=83.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCc--------eEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--------~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~ 241 (384)
+.+.++++|+.|||-+||+|+.-+..+....+.. .+++.|++++.++.+++|++..|+.. +.+...|+..+
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence 3445688999999999999998776655554422 38999999999999999999999865 78888999988
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+ ...+.+|.|++|||. -.....-..+..+..++++.+.+.+ ++ ..++.|++
T Consensus 101 ~--~~~~~~d~IvtnPPy--------------G~r~~~~~~~~~ly~~~~~~~~~~l----~~--~~v~l~~~ 151 (179)
T PF01170_consen 101 P--LPDGSVDAIVTNPPY--------------GRRLGSKKDLEKLYRQFLRELKRVL----KP--RAVFLTTS 151 (179)
T ss_dssp G--GTTSBSCEEEEE--S--------------TTSHCHHHHHHHHHHHHHHHHHCHS----TT--CEEEEEES
T ss_pred c--cccCCCCEEEECcch--------------hhhccCHHHHHHHHHHHHHHHHHHC----CC--CEEEEEEC
Confidence 7 233689999999994 2223333445677888888888875 77 55555543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-09 Score=103.35 Aligned_cols=128 Identities=21% Similarity=0.201 Sum_probs=99.7
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
|.+|.+...-|....+.+|||+|||-|-.++.+++..+ ...|+-+|+|...++.+++|++.+++++..+...|.....
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 67788888888887777999999999999999999876 4799999999999999999999999998655455554322
Q ss_pred ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 244 ~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
. ++||.|+++||-- ... ......-.+|+..|.+.| ++||.|....-...+
T Consensus 222 -~--~kfd~IisNPPfh--------------~G~---~v~~~~~~~~i~~A~~~L----~~gGeL~iVan~~l~ 271 (300)
T COG2813 222 -E--GKFDLIISNPPFH--------------AGK---AVVHSLAQEIIAAAARHL----KPGGELWIVANRHLP 271 (300)
T ss_pred -c--ccccEEEeCCCcc--------------CCc---chhHHHHHHHHHHHHHhh----ccCCEEEEEEcCCCC
Confidence 1 4899999999931 111 112223346899999986 999999876654444
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-10 Score=108.27 Aligned_cols=138 Identities=16% Similarity=0.199 Sum_probs=102.1
Q ss_pred CCcCcchhhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCC
Q 016730 164 SASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE 240 (384)
Q Consensus 164 d~ss~l~~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~ 240 (384)
-+...++..+|. .++|.+|||+|||+|-.+...+.+ +...|+|+|+|+..++.+++|+.++|+.. +.....+...
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~ 223 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE 223 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence 356667777764 568999999999999977765555 45789999999999999999999999975 2222223322
Q ss_pred cccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 241 ~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
.+ ..++||+|+++- |+..-.++...+...+ ||||+++.|- |..+.
T Consensus 224 ~~---~~~~~DvIVANI-------------------------LA~vl~~La~~~~~~l----kpgg~lIlSG--Il~~q- 268 (300)
T COG2264 224 VP---ENGPFDVIVANI-------------------------LAEVLVELAPDIKRLL----KPGGRLILSG--ILEDQ- 268 (300)
T ss_pred hc---ccCcccEEEehh-------------------------hHHHHHHHHHHHHHHc----CCCceEEEEe--ehHhH-
Confidence 22 236899999852 4444556667777765 9999999987 55554
Q ss_pred HHHHHHHHhcCCCEEeec
Q 016730 321 EAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 321 e~vv~~~l~~~~~~l~~~ 338 (384)
++.|...+.+.++++++.
T Consensus 269 ~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 269 AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HHHHHHHHHhCCCeEeEE
Confidence 667777777888888875
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=115.63 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=67.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC------------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG------------ 246 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~------------ 246 (384)
+.+|||+|||+|..|+.++... ..|+|+|+++..++.+++|++.+|++|+.+.++|+..+...+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 4899999999999999999999999999999999876422110
Q ss_pred --CCCCCEEEEcCCCCCC
Q 016730 247 --LNTVDRVLLDAPCSGT 262 (384)
Q Consensus 247 --~~~fD~VllDaPCSg~ 262 (384)
..+||.|++|||-+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 1259999999997543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=111.94 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=84.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+++.+|||+|||+|+.+.++++.. ...|+++|+++.+++.++++++..|+. ++.+..+|+..++. ..+.||.|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--EDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--CCCCccEEEE
Confidence 578899999999999999999876 368999999999999999999998874 68999999987653 3478999987
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.- ++..-|+ ..+++..+.++| ||||+++.+++.
T Consensus 193 ~~------~~~h~~d----------------~~~~l~e~~rvL----kpGG~lvi~~~~ 225 (340)
T PLN02244 193 ME------SGEHMPD----------------KRKFVQELARVA----APGGRIIIVTWC 225 (340)
T ss_pred CC------chhccCC----------------HHHHHHHHHHHc----CCCcEEEEEEec
Confidence 21 1111111 135677778875 999999988753
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=103.13 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..++.++... ...|+++|+++..++.+++|++.+|+.++.++++|+....... ...||.|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-GTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-CCCceEEEEC
Confidence 568899999999999987544432 3689999999999999999999999989999999987543211 2469999999
Q ss_pred CCC
Q 016730 257 APC 259 (384)
Q Consensus 257 aPC 259 (384)
||.
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 994
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.1e-10 Score=104.50 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=82.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.++.+|||+|||+|..+..+++. ...|+++|+|+.+++.+++++...|+. ++.++++|+.++.... .+.||.|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-ETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-CCCCCEEEe
Confidence 45679999999999999988875 368999999999999999999999874 6888888887764322 368999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
... +.+... ...+|..+.++| ||||+++....+
T Consensus 119 ~~v------------l~~~~~----------~~~~l~~~~~~L----kpgG~l~i~~~n 151 (255)
T PRK11036 119 HAV------------LEWVAD----------PKSVLQTLWSVL----RPGGALSLMFYN 151 (255)
T ss_pred hhH------------HHhhCC----------HHHHHHHHHHHc----CCCeEEEEEEEC
Confidence 433 111111 134677888875 999999865433
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=105.65 Aligned_cols=101 Identities=31% Similarity=0.382 Sum_probs=74.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++|+.|+||+||-|.+++.+|...+ ...|+|+|+++..++.+++|++.+++++ +.++++|++.+.. ...||+|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEEE
Confidence 57899999999999999999988543 4689999999999999999999999987 7788999998765 37899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
++.|-++. ++|..|..++ |+||.+-|
T Consensus 175 m~lp~~~~--------------------------~fl~~~~~~~----~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPESSL--------------------------EFLDAALSLL----KEGGIIHY 200 (200)
T ss_dssp E--TSSGG--------------------------GGHHHHHHHE----EEEEEEEE
T ss_pred ECChHHHH--------------------------HHHHHHHHHh----cCCcEEEC
Confidence 99883221 3677788876 99999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=113.28 Aligned_cols=110 Identities=26% Similarity=0.323 Sum_probs=84.7
Q ss_pred hhhhcCCC-CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQ-EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~-~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+|++++.+.+.|+..+... ..
T Consensus 48 v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~ 124 (382)
T PRK04338 48 VLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--ER 124 (382)
T ss_pred HHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cC
Confidence 33444333 457999999999999999887664 358999999999999999999999999888899998764321 25
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.||+|++||| |++ ...|..|+..+ ++||.+ |.||
T Consensus 125 ~fD~V~lDP~--Gs~------------------------~~~l~~al~~~----~~~gil-yvSA 158 (382)
T PRK04338 125 KFDVVDIDPF--GSP------------------------APFLDSAIRSV----KRGGLL-CVTA 158 (382)
T ss_pred CCCEEEECCC--CCc------------------------HHHHHHHHHHh----cCCCEE-EEEe
Confidence 7999999998 443 23677777775 887666 4444
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=102.41 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=84.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+.+|.+|||+|||+|..+..++.. + ...|+|+|+|+.+++.+++|+++.++. .+.+..+| ..||.|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------CCcCEEE
Confidence 467999999999999877765543 3 347999999999999999999999883 33332221 2699999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
++.. ......++..+.+.| ||||+++.+.... +..+-+...+++.+++
T Consensus 185 ani~-------------------------~~~~~~l~~~~~~~L----kpgG~lilsgi~~---~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 185 ANIL-------------------------ANPLLELAPDLARLL----KPGGRLILSGILE---EQADEVLEAYEEAGFT 232 (250)
T ss_pred EcCc-------------------------HHHHHHHHHHHHHhc----CCCcEEEEEECcH---hhHHHHHHHHHHCCCE
Confidence 8632 011245677777775 9999999986432 3444455566777887
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
++..
T Consensus 233 ~~~~ 236 (250)
T PRK00517 233 LDEV 236 (250)
T ss_pred EEEE
Confidence 7653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=112.91 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=66.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---------C---
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---------G--- 246 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---------~--- 246 (384)
+.+|||+|||+|..++.++... ..|+|+|+++..++.+++|++.+|++|+.++.+|+.++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3479999999999999888864 479999999999999999999999999999999987643210 0
Q ss_pred --CCCCCEEEEcCCCCCC
Q 016730 247 --LNTVDRVLLDAPCSGT 262 (384)
Q Consensus 247 --~~~fD~VllDaPCSg~ 262 (384)
...||.|++|||-+|.
T Consensus 275 ~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred cccCCCCEEEECCCCCCC
Confidence 0248999999996554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=105.63 Aligned_cols=135 Identities=17% Similarity=0.153 Sum_probs=91.3
Q ss_pred CcCcchhhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc
Q 016730 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (384)
Q Consensus 165 ~ss~l~~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~ 241 (384)
+...++..++. ..+|.+|||+|||+|..+..++.+ +...|+|+|+|+.+++.+++|+..+++.. +.+...|....
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 33444444443 457899999999999988776654 33689999999999999999999998864 45555543221
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
. .++||+|+++..+ ....+++..+.+.| ||||+++.|.. ..++-+
T Consensus 222 ~----~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~L----kpgG~li~sgi--~~~~~~ 266 (288)
T TIGR00406 222 I----EGKADVIVANILA-------------------------EVIKELYPQFSRLV----KPGGWLILSGI--LETQAQ 266 (288)
T ss_pred c----CCCceEEEEecCH-------------------------HHHHHHHHHHHHHc----CCCcEEEEEeC--cHhHHH
Confidence 1 2689999987421 11135677777775 99999998874 333334
Q ss_pred HHHHHHHhcCCCEEeec
Q 016730 322 AVIDYALKKRDVKLVPC 338 (384)
Q Consensus 322 ~vv~~~l~~~~~~l~~~ 338 (384)
++ ...+++. ++++..
T Consensus 267 ~v-~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 267 SV-CDAYEQG-FTVVEI 281 (288)
T ss_pred HH-HHHHHcc-CceeeE
Confidence 44 4444554 666543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-10 Score=103.15 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=97.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEe-cCCCCcccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN-YDGNELPKV 244 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~-~D~~~~~~~ 244 (384)
-.+...++......+||++|++.|.-|++||..++..|+++++|+++++.+.+++|+++.|+.+ ++.+. +|+.+....
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 3455556666678899999999999999999999867899999999999999999999999987 66766 487765432
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
...++||.|++|+- ...+.+.+..++++| +|||.+|.-.-...
T Consensus 128 ~~~~~fDliFIDad-------------------------K~~yp~~le~~~~lL----r~GGliv~DNvl~~ 170 (219)
T COG4122 128 LLDGSFDLVFIDAD-------------------------KADYPEYLERALPLL----RPGGLIVADNVLFG 170 (219)
T ss_pred ccCCCccEEEEeCC-------------------------hhhCHHHHHHHHHHh----CCCcEEEEeecccC
Confidence 23489999999985 113456788889986 99999987665554
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=98.83 Aligned_cols=113 Identities=18% Similarity=0.129 Sum_probs=84.4
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+...++.+|||+|||+|..+.++++. ...|+|+|+|+.+++.+++++...++.++.+...|...++. .+.
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 95 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---DGE 95 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---CCC
Confidence 344555667789999999999999999875 35899999999999999999999999888888888876542 257
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
||.|++-.. + .+ ..+. ....++..+.++| ||||.+++.+
T Consensus 96 fD~I~~~~~------~------~~-~~~~-------~~~~~l~~i~~~L----kpgG~~~~~~ 134 (197)
T PRK11207 96 YDFILSTVV------L------MF-LEAK-------TIPGLIANMQRCT----KPGGYNLIVA 134 (197)
T ss_pred cCEEEEecc------h------hh-CCHH-------HHHHHHHHHHHHc----CCCcEEEEEE
Confidence 999997322 1 01 1111 1345777777875 9999976543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-10 Score=110.18 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=88.8
Q ss_pred CcCcchhhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 165 ~ss~l~~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
++.+++..+|. ..+|.+|||+|||+|-.++..+.+ +..+|+|+|+|+..++.+++|++.+|+.....+. ......
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~~ 222 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDLV 222 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCTC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eecccc
Confidence 34455555553 568999999999999977655444 4468999999999999999999999997632222 222222
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHH
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~ 322 (384)
..+||.|+.+-- +..-..+.....++ |+|||+++.|- |..++.+.
T Consensus 223 ----~~~~dlvvANI~-------------------------~~vL~~l~~~~~~~----l~~~G~lIlSG--Il~~~~~~ 267 (295)
T PF06325_consen 223 ----EGKFDLVVANIL-------------------------ADVLLELAPDIASL----LKPGGYLILSG--ILEEQEDE 267 (295)
T ss_dssp ----CS-EEEEEEES--------------------------HHHHHHHHHHCHHH----EEEEEEEEEEE--EEGGGHHH
T ss_pred ----cccCCEEEECCC-------------------------HHHHHHHHHHHHHh----hCCCCEEEEcc--ccHHHHHH
Confidence 278999998631 11223344444444 59999999865 56666666
Q ss_pred HHHHHHhcCCCEEeec
Q 016730 323 VIDYALKKRDVKLVPC 338 (384)
Q Consensus 323 vv~~~l~~~~~~l~~~ 338 (384)
|++.+ ++ +++++..
T Consensus 268 v~~a~-~~-g~~~~~~ 281 (295)
T PF06325_consen 268 VIEAY-KQ-GFELVEE 281 (295)
T ss_dssp HHHHH-HT-TEEEEEE
T ss_pred HHHHH-HC-CCEEEEE
Confidence 66655 55 8887654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=101.79 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=59.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccccc--CCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~--~~~~fD~Vl 254 (384)
+|.+|||+|||+|..++..+++ +...|+.+|.|+..++.+++|++.+++.+ +.+++.|+....... ...+||.|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 6899999999999988865554 45699999999999999999999999986 888888876543222 357899999
Q ss_pred EcCCC
Q 016730 255 LDAPC 259 (384)
Q Consensus 255 lDaPC 259 (384)
+|||.
T Consensus 120 lDPPY 124 (183)
T PF03602_consen 120 LDPPY 124 (183)
T ss_dssp E--ST
T ss_pred ECCCc
Confidence 99995
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-09 Score=98.29 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=86.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..++..++..+.++++|+++.++..++++... ...++.+...|+...+. ..+.|
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~--~~~~~ 88 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPF--PDGSF 88 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCC--CCCCc
Confidence 3456678899999999999999999999875557999999999999999888433 23468888888876542 34789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|.|+++.. + .+.. ....++.++.+.| ||||.++.+.+.
T Consensus 89 D~v~~~~~------~------~~~~----------~~~~~l~~~~~~L----~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRV------L------QHLE----------DPARALAEIARVL----RPGGRVVVLDTD 126 (241)
T ss_pred eEEEEech------h------hccC----------CHHHHHHHHHHHh----cCCcEEEEEecC
Confidence 99998532 1 0111 1244677788875 999999988764
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=98.11 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=86.6
Q ss_pred cccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Q 016730 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (384)
Q Consensus 155 ~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~ 234 (384)
|..+.|-..-.++ .....+.+.++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.++++++..|++ +.+.
T Consensus 8 ~~~~~~~~~~~~~-~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~ 82 (195)
T TIGR00477 8 YFHKKYGMTTTHS-AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTD 82 (195)
T ss_pred HHHHhhCCCCchH-HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeE
Confidence 4444444442333 3345555556779999999999999999874 368999999999999999999888885 6666
Q ss_pred ecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
..|....+. .++||.|++..+.. ..... ....++..+.++| ||||+++..+
T Consensus 83 ~~d~~~~~~---~~~fD~I~~~~~~~-------------~~~~~-------~~~~~l~~~~~~L----kpgG~lli~~ 133 (195)
T TIGR00477 83 AYDINAAAL---NEDYDFIFSTVVFM-------------FLQAG-------RVPEIIANMQAHT----RPGGYNLIVA 133 (195)
T ss_pred eccchhccc---cCCCCEEEEecccc-------------cCCHH-------HHHHHHHHHHHHh----CCCcEEEEEE
Confidence 677654332 25799998754321 01111 1235677777775 9999966554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-09 Score=99.96 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+.++.+|||+|||+|..+..++..+ .+.++|+++|+|+.+++.+++++.+.|.. ++.++++|+..++. ..+|.|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCEE
Confidence 3578899999999999998888764 34579999999999999999999998875 68888999877652 458998
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
++.-. +.+. .. .....++.++.+.| ||||.++.+...
T Consensus 130 v~~~~------------l~~l-~~-------~~~~~~l~~i~~~L----kpGG~l~l~e~~ 166 (247)
T PRK15451 130 VLNFT------------LQFL-EP-------SERQALLDKIYQGL----NPGGALVLSEKF 166 (247)
T ss_pred ehhhH------------HHhC-CH-------HHHHHHHHHHHHhc----CCCCEEEEEEec
Confidence 86321 0111 11 11356788888886 999999998743
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=103.38 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=80.3
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+.+|.+|||+|||+|..+..++.. .+.|+++|.++++++.++.+....+. .++.++++|+.+++. ..++||+|
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~~~~FD~V 202 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--EGRKFDAV 202 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--ccCCCCEE
Confidence 3567889999999999998888763 36899999999999999988766554 468888999877653 23689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
++- +++.. ......+|....++| ||||.++.+|
T Consensus 203 i~~------~vLeH----------------v~d~~~~L~~l~r~L----kPGG~liist 235 (322)
T PLN02396 203 LSL------EVIEH----------------VANPAEFCKSLSALT----IPNGATVLST 235 (322)
T ss_pred EEh------hHHHh----------------cCCHHHHHHHHHHHc----CCCcEEEEEE
Confidence 972 12111 111234677777775 9999999987
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=102.67 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=83.2
Q ss_pred CCceEEEeccCCChHHHHHHH-HccCCceEEEEeCCHHHHHHHHHHHHH-cCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAA-LMKNTGLIYANEMKASRLKSLTANLHR-MGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~-~~~~~g~V~a~D~~~~rl~~l~~n~~r-~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
++++|+|+|||||+.|..+.. ...++++++++|+|+++++.+++++++ .|+.+ +.+..+|+.+..... +.||.|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l--~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL--KEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc--CCcCEEE
Confidence 678999999999988665443 444568999999999999999999965 88865 999999998764332 6899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+++ + ..+++ ..+.++|++..+.| +|||.+++-+
T Consensus 201 ~~A-L-------------i~~dk-------~~k~~vL~~l~~~L----kPGG~Lvlr~ 233 (296)
T PLN03075 201 LAA-L-------------VGMDK-------EEKVKVIEHLGKHM----APGALLMLRS 233 (296)
T ss_pred Eec-c-------------ccccc-------ccHHHHHHHHHHhc----CCCcEEEEec
Confidence 983 1 11111 12456888888886 9999999876
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-09 Score=100.59 Aligned_cols=107 Identities=13% Similarity=0.212 Sum_probs=81.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..+++..+ .+.|+++|+|+.+++.+++++ .++.+..+|+..+.. ..+|
T Consensus 24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~---~~~f 94 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP---PQAL 94 (258)
T ss_pred HhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC---CCCc
Confidence 3445567889999999999999999998864 379999999999999998764 457778888876532 2589
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|+|+++... .|... +.+++..+.+.| ||||.++.++
T Consensus 95 D~v~~~~~l------------~~~~d----------~~~~l~~~~~~L----kpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASL------------QWLPD----------HLELFPRLVSLL----APGGVLAVQM 130 (258)
T ss_pred cEEEEccCh------------hhCCC----------HHHHHHHHHHhc----CCCcEEEEEC
Confidence 999986541 12111 245778888875 9999998864
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=105.18 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=95.1
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..+|++||||.||-|.+|+.+|..-. ..|+|+|+|+..++.+++|++.+++.+ +..+++|++...... ..||+|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEE
Confidence 45799999999999999999988743 349999999999999999999999988 889999999886544 6899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc---cHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE---NEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E---Ne~vv~~~l~~~ 331 (384)
+.-|- .+.+.+..|.+.+ ++||.+.|-+-+-..+. .+..+..+..+.
T Consensus 262 m~~p~--------------------------~a~~fl~~A~~~~----k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 262 MGLPK--------------------------SAHEFLPLALELL----KDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred eCCCC--------------------------cchhhHHHHHHHh----hcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 98772 1234778889986 99999987653221111 334555555444
Q ss_pred C
Q 016730 332 D 332 (384)
Q Consensus 332 ~ 332 (384)
+
T Consensus 312 ~ 312 (341)
T COG2520 312 G 312 (341)
T ss_pred c
Confidence 3
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=97.53 Aligned_cols=125 Identities=25% Similarity=0.230 Sum_probs=86.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc------ccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~------~~~~~~ 249 (384)
.++|.+|+|+||||||.+..++..++..+.|+|+|+.+-.. +.+|.++.+|.+.... .+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 35799999999999999999999998888899999987432 3468888999886432 233456
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
+|+|++|+.--.+|.... +.. .+..+...|+.+...+|+|||.+|. ..+.-++++.+-+.++
T Consensus 112 ~DvV~sD~ap~~~g~~~~----------Dh~-----r~~~L~~~a~~~a~~vL~~~G~fv~---K~fqg~~~~~~l~~~~ 173 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSV----------DHA-----RSMYLCELALEFALEVLKPGGSFVA---KVFQGEDFEDLLKALR 173 (205)
T ss_pred cceEEecCCCCcCCCccc----------cHH-----HHHHHHHHHHHHHHHeeCCCCeEEE---EEEeCCCHHHHHHHHH
Confidence 899999987555554322 211 2333444444444444699999985 4466666655554444
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=102.53 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=81.2
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 247 (384)
.....++++||++|||+|||-|+.+.++++..+ ..|+++.+|+...+.+++.+++.|+.+ +.+...|.++++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-----
Confidence 445667899999999999999999999999863 689999999999999999999999965 888888877654
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
.+||+|+. .|++-.- ..+. -..++..+.++| ||||+++.-+++...
T Consensus 126 ~~fD~IvS------i~~~Ehv-------g~~~-------~~~~f~~~~~~L----kpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 126 GKFDRIVS------IEMFEHV-------GRKN-------YPAFFRKISRLL----KPGGRLVLQTITHRD 171 (273)
T ss_dssp -S-SEEEE------ESEGGGT-------CGGG-------HHHHHHHHHHHS----ETTEEEEEEEEEE--
T ss_pred CCCCEEEE------Eechhhc-------ChhH-------HHHHHHHHHHhc----CCCcEEEEEeccccc
Confidence 48999986 2332211 1111 234677777775 999999876665533
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.3e-10 Score=101.93 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
-+|.+|||+|||-|..+..||++ +..|+|+|++++.++.++....+.|+. +........++.. .+++||+|+|-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~--~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS--AGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh--cCCCccEEEEh
Confidence 36899999999999999888886 268999999999999999999998875 3343333333332 23799999982
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
++.+....-..+++++.+++ ||||.++.||-.
T Consensus 132 ----------------------EVlEHv~dp~~~~~~c~~lv----kP~G~lf~STin 163 (243)
T COG2227 132 ----------------------EVLEHVPDPESFLRACAKLV----KPGGILFLSTIN 163 (243)
T ss_pred ----------------------hHHHccCCHHHHHHHHHHHc----CCCcEEEEeccc
Confidence 12222222345889999987 999999999854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.2e-09 Score=98.28 Aligned_cols=148 Identities=13% Similarity=0.023 Sum_probs=95.4
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.+.++.+|||+|||+|..+..++...+. ..|+++|+++..++.+++++ .++.++++|+..+.. ..+||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc---cCCCcEEE
Confidence 4455679999999999998888776533 58999999999999988764 357788899987642 26899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE--EEEeccC-CccccHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI--VYSTCSI-MVTENEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l--vYsTCSi-~~~ENe~vv~~~l~~~ 331 (384)
+|||........+.....+.-.......+ .-.+++.....+| +|+|.+ +|++--+ +..=..+-...+|+..
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L----~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFI----VPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHhee----cCCceEEEEEeccccccccCCHHHHHHHHHhc
Confidence 99997554332222211111000000000 0134566666664 999965 3665222 3334455566788888
Q ss_pred CCEEee
Q 016730 332 DVKLVP 337 (384)
Q Consensus 332 ~~~l~~ 337 (384)
++.+-+
T Consensus 206 g~~~~~ 211 (279)
T PHA03411 206 GLVTYA 211 (279)
T ss_pred CcEecC
Confidence 887754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.8e-10 Score=87.66 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=71.2
Q ss_pred EEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~ 262 (384)
||+|||+|..+..+++. +...|+++|+++.+++.++++....++ .+...|+..++ +.++.||.|++.--
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~--~~~~sfD~v~~~~~---- 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGV---SFRQGDAEDLP--FPDNSFDVVFSNSV---- 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTE---EEEESBTTSSS--S-TT-EEEEEEESH----
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCc---hheeehHHhCc--cccccccccccccc----
Confidence 89999999999999988 347999999999999999988765444 48889999885 34589999998321
Q ss_pred CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 263 G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
..+. ..+.++++++.+.| ||||+++.
T Consensus 70 --------~~~~----------~~~~~~l~e~~rvL----k~gG~l~~ 95 (95)
T PF08241_consen 70 --------LHHL----------EDPEAALREIYRVL----KPGGRLVI 95 (95)
T ss_dssp --------GGGS----------SHHHHHHHHHHHHE----EEEEEEEE
T ss_pred --------eeec----------cCHHHHHHHHHHHc----CcCeEEeC
Confidence 0111 23466888889886 99999974
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=95.45 Aligned_cols=81 Identities=27% Similarity=0.316 Sum_probs=65.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC-CCCCEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL-NTVDRVL 254 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~-~~fD~Vl 254 (384)
-.|.+|||++||+|+.++..+++ +...++.+|.|.+.+..+++|++.+|+. ++.++..|+..+...... +.||.|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 36899999999999988876665 4568999999999999999999999964 577778888854222221 3599999
Q ss_pred EcCCC
Q 016730 255 LDAPC 259 (384)
Q Consensus 255 lDaPC 259 (384)
+|||.
T Consensus 120 lDPPy 124 (187)
T COG0742 120 LDPPY 124 (187)
T ss_pred eCCCC
Confidence 99995
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=101.14 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..+++..+ .+.|+++|+|+.+++.++++ ++.+..+|+..+.. .+.|
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---~~~f 90 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP---KPDT 90 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---CCCc
Confidence 3445667889999999999999999998874 47899999999999988653 45677889876532 3689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|++.... .|... +.+++..+.+.| ||||+++..
T Consensus 91 D~v~~~~~l------------~~~~d----------~~~~l~~~~~~L----kpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAAL------------QWVPE----------HADLLVRWVDEL----APGSWIAVQ 125 (255)
T ss_pred eEEEEehhh------------hhCCC----------HHHHHHHHHHhC----CCCcEEEEE
Confidence 999986541 12111 245677888875 999999875
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=81.67 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=80.5
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|+|+|||+|..+..++. .....++++|+++..+..+++.....+..++.+...|...... ....+||.|+++.||.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999888877 3457999999999999998865555566678888888887653 1236899999999975
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.. ...+..++..+.+.+ +|||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l----~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLL----KPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHc----CCCCEEEEE
Confidence 43 234566788888875 999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=108.77 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=82.3
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
-+|||++||+|..++.++...++...|+++|+++..++.+++|++.+++.++.+++.|+..+.... ...||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDPf- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-NRKFHVIDIDPF- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCCC-
Confidence 489999999999999888875444689999999999999999999999998999999998764322 257999999997
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|+. ..+|+.|++.+ ++||.|. .||
T Consensus 124 -Gs~------------------------~~fld~al~~~----~~~glL~-vTa 147 (374)
T TIGR00308 124 -GTP------------------------APFVDSAIQAS----AERGLLL-VTA 147 (374)
T ss_pred -CCc------------------------HHHHHHHHHhc----ccCCEEE-EEe
Confidence 221 13778888886 8887664 443
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-09 Score=99.78 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=84.5
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.++..+.+.++.+|||+|||+|+.+..++... .+.|+++|+++.+++.++++... ..++.+.+.|+...+ +..+
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~--~~~~ 116 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD--FPEN 116 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--CCCC
Confidence 34455678899999999999999998888754 36899999999999999987654 346888889987654 2347
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+||+|++-.. -..... .....+|+++.++| ||||+++.+..
T Consensus 117 ~FD~V~s~~~-------------l~h~~~-------~d~~~~l~~i~r~L----kPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDA-------------ILHLSY-------ADKKKLFEKCYKWL----KPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhh-------------HHhCCH-------HHHHHHHHHHHHHc----CCCcEEEEEEe
Confidence 8999997211 001111 12356788888886 99999997653
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-09 Score=96.22 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=65.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc-C-CCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-G-LNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~-~-~~~fD~Vl 254 (384)
+|.+|||+|||+|..++.++.+. ...|+++|.++..++.+++|++.+|+. ++.+++.|+....... . ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 58899999999999998887763 358999999999999999999999986 5888999985542211 1 13589999
Q ss_pred EcCCC
Q 016730 255 LDAPC 259 (384)
Q Consensus 255 lDaPC 259 (384)
+|||.
T Consensus 127 ~DPPy 131 (189)
T TIGR00095 127 LDPPF 131 (189)
T ss_pred ECcCC
Confidence 99996
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.9e-09 Score=115.97 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=105.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC----------------ceEEEEecCCCCcc
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----------------TNTIVCNYDGNELP 242 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~----------------~~v~~~~~D~~~~~ 242 (384)
+.+|||+|||+|..++.++...++ +.|+|+|+|+..++.+++|++++++ .++.++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 468999999999999999988754 6999999999999999999998754 35889999987643
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCC-Cchhhcc------------CCHHHH---HHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISK-DESVKTS------------KSLEDI---QKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r-~p~~~~~------------~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
... ..+||+|+.+||+=..+-+.. .|+++-. ...... ...-...++|+..+.+.| +|||
T Consensus 198 ~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L----~pgG 272 (1082)
T PLN02672 198 RDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI----KPMG 272 (1082)
T ss_pred ccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhc----cCCC
Confidence 211 136999999999755543221 2222200 000010 234456788999999886 9999
Q ss_pred EEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 307 ~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
.++. -+.....++|.+.++++.+++.+.
T Consensus 273 ~l~l---EiG~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 273 IMIF---NMGGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred EEEE---EECccHHHHHHHHHHHHCCCCeeE
Confidence 8874 455666666765566666655443
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=98.76 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=96.7
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 247 (384)
+.+..|.++||++|||+|||-|+.+.++|+..+ .+|+++++|++..+.+++.++..|+. ++++...|-+++.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----
Confidence 345567899999999999999999999999873 68999999999999999999999998 7889888887765
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+.||+|+. .|++-. ... +.....+..+.+.| +|||.++.-|-+....+-.....++
T Consensus 136 e~fDrIvS------vgmfEh-------vg~-------~~~~~ff~~~~~~L----~~~G~~llh~I~~~~~~~~~~~~~i 191 (283)
T COG2230 136 EPFDRIVS------VGMFEH-------VGK-------ENYDDFFKKVYALL----KPGGRMLLHSITGPDQEFRRFPDFI 191 (283)
T ss_pred cccceeee------hhhHHH-------hCc-------ccHHHHHHHHHhhc----CCCceEEEEEecCCCcccccchHHH
Confidence 45999975 333211 011 12345677777775 9999998776554442322344444
Q ss_pred Hhc
Q 016730 328 LKK 330 (384)
Q Consensus 328 l~~ 330 (384)
.+.
T Consensus 192 ~~y 194 (283)
T COG2230 192 DKY 194 (283)
T ss_pred HHh
Confidence 443
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=94.41 Aligned_cols=85 Identities=29% Similarity=0.305 Sum_probs=62.7
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC-CCEEEEcC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT-VDRVLLDA 257 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~-fD~VllDa 257 (384)
..|+|+|||-||-|.++|... ..|+|+|+++.|++.++.|++-+|+. ++.++++|..++........ ||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999974 47999999999999999999999975 79999999988754432222 89999999
Q ss_pred CCCCCCcCCC
Q 016730 258 PCSGTGVISK 267 (384)
Q Consensus 258 PCSg~G~~~r 267 (384)
|=.|......
T Consensus 78 PWGGp~Y~~~ 87 (163)
T PF09445_consen 78 PWGGPSYSKK 87 (163)
T ss_dssp -BSSGGGGGS
T ss_pred CCCCcccccc
Confidence 9888776553
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=100.87 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=84.2
Q ss_pred EeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc
Q 016730 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241 (384)
Q Consensus 162 ~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~ 241 (384)
+|...+......+...++.+|||+|||+|..+..++.. ...|+++|+|+.+++.++++.. ...++++|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 56666555566666666789999999999988887763 3689999999999999887643 234667888776
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+. ..+.||.|+++.+ +.|... ...+|.++.+.| ||||.++++|-
T Consensus 98 ~~--~~~~fD~V~s~~~------------l~~~~d----------~~~~l~~~~~~L----k~gG~l~~~~~ 141 (251)
T PRK10258 98 PL--ATATFDLAWSNLA------------VQWCGN----------LSTALRELYRVV----RPGGVVAFTTL 141 (251)
T ss_pred cC--CCCcEEEEEECch------------hhhcCC----------HHHHHHHHHHHc----CCCeEEEEEeC
Confidence 52 3468999997543 122211 235677888875 99999999873
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=86.28 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=73.8
Q ss_pred EEEeccCCChHHHHHHHHccC--CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~--~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
|||+|||+|..+..++...+. ...++++|+|+.+++.++++....+. ++.+++.|+.+++.. .++||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~--~~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS--DGKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH--SSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc--CCCeeEEEE----
Confidence 799999999999999998722 26899999999999999999998777 688899999987643 369999997
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
++.. + . ..++++ +.+++++..+++ ||||
T Consensus 74 ~~~~-~------~-~~~~~~-------~~~ll~~~~~~l----~pgG 101 (101)
T PF13649_consen 74 SGLS-L------H-HLSPEE-------LEALLRRIARLL----RPGG 101 (101)
T ss_dssp -TTG-G------G-GSSHHH-------HHHHHHHHHHTE----EEEE
T ss_pred cCCc-c------C-CCCHHH-------HHHHHHHHHHHh----CCCC
Confidence 1111 1 1 133333 467888888886 9998
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.8e-10 Score=102.61 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=86.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc----CCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL----GLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~----~~~~fD~ 252 (384)
...+||++|++.|.-|+++|..+++.|+|+++|+++++.+.+++++++.|+. .+.++.+|+.+....+ ..+.||.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 3458999999999999999999988899999999999999999999999985 5999999997642211 1257999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|++|+. | ..+...+..++++| +|||.++.-..-
T Consensus 125 VFiDa~-------------K------------~~y~~y~~~~~~ll----~~ggvii~DN~l 157 (205)
T PF01596_consen 125 VFIDAD-------------K------------RNYLEYFEKALPLL----RPGGVIIADNVL 157 (205)
T ss_dssp EEEEST-------------G------------GGHHHHHHHHHHHE----EEEEEEEEETTT
T ss_pred EEEccc-------------c------------cchhhHHHHHhhhc----cCCeEEEEcccc
Confidence 999986 1 12344566777775 999999987554
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-09 Score=96.85 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=79.6
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccc
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~ 243 (384)
+...+....|++.||.+|++.|+|+|+.+..++..+.+.|+|+.+|.+..|.+.+.+..++.|+. |+.+.+-|.-....
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 33446678889999999999999999999999999999999999999999999999999999984 67777777654332
Q ss_pred ccCCCCCCEEEEcCC
Q 016730 244 VLGLNTVDRVLLDAP 258 (384)
Q Consensus 244 ~~~~~~fD~VllDaP 258 (384)
......+|.|++|.|
T Consensus 172 ~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP 186 (314)
T ss_pred cccccccceEEEcCC
Confidence 222478999999998
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=94.25 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=86.5
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+.+.++.+|||+|||+|..+..++...+....++++|+++.+++.+++++...+.. ++.+...|+...+. ..+.
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~ 121 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--PDNS 121 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--CCCC
Confidence 44455667899999999999999999988753579999999999999999998776553 57888888877652 2368
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
||+|++.- ++..-+ . ...+|..+.++| +|||.+++++-+.
T Consensus 122 ~D~I~~~~------~l~~~~------~----------~~~~l~~~~~~L----~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAF------GLRNVP------D----------IDKALREMYRVL----KPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEec------ccccCC------C----------HHHHHHHHHHhc----cCCcEEEEEEecC
Confidence 99998621 111000 1 134677777775 9999999876544
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=95.45 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=97.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEec----CCCCcccccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNY----DGNELPKVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~----D~~~~~~~~~~~~fD~ 252 (384)
.+..+||+|||+|..++.++.-++ .+.|+|+|+|+..+..+.+|++|+++.+ +.+++. |....-. ...++.|.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~~dl 225 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGKIDL 225 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-cccCceeE
Confidence 456899999999999999999887 5899999999999999999999999876 556544 3322221 22378999
Q ss_pred EEEcCCCCCCC-cCCCCchhhccCCHHHHH---HHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 253 VLLDAPCSGTG-VISKDESVKTSKSLEDIQ---KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 253 VllDaPCSg~G-~~~r~p~~~~~~~~~~i~---~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
++++||+--+- .-.-+|+++....+-.+. +....-..++.-|.++ |+|||.+.+.+-- ..+....|...+
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~----Lq~gg~~~le~~~--~~~~~~lv~~~m 299 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRM----LQPGGFEQLELVE--RKEHSYLVRIWM 299 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhh----cccCCeEEEEecc--cccCcHHHHHHH
Confidence 99999963222 111256665443332221 1222333445555565 5999999997642 255566777555
Q ss_pred h
Q 016730 329 K 329 (384)
Q Consensus 329 ~ 329 (384)
.
T Consensus 300 ~ 300 (328)
T KOG2904|consen 300 I 300 (328)
T ss_pred H
Confidence 4
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-08 Score=90.66 Aligned_cols=140 Identities=23% Similarity=0.271 Sum_probs=94.9
Q ss_pred Ccchhhhc------CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~L------~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
|.|++.++ .+++|.+||-+|||+|..-.|++...+..|.|+|+|.++...+.+-..+++- +|+..+..|++.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 55666554 3678999999999999999999999998899999999999888887766653 588888899998
Q ss_pred ccccc-CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHH-HHHchhccCCCCcEEEEEe--ccCC
Q 016730 241 LPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA-AIDMVDANSKSGGYIVYST--CSIM 316 (384)
Q Consensus 241 ~~~~~-~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~-a~~~L~~~lkpGG~lvYsT--CSi~ 316 (384)
+.... --+.+|+|+.|.. .| -|.+|+.. |-.+ ||+||.++.+- -|+.
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---------Qp----------------~Qa~I~~~Na~~f----Lk~gG~~~i~iKa~siD 184 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---------QP----------------DQARIAALNARHF----LKPGGHLIISIKARSID 184 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---------ST----------------THHHHHHHHHHHH----EEEEEEEEEEEEHHHH-
T ss_pred hHHhhcccccccEEEecCC---------Ch----------------HHHHHHHHHHHhh----ccCCcEEEEEEecCccc
Confidence 64431 1258999999986 11 25555544 4455 49999988764 4454
Q ss_pred c-cccHHHHHH---HHhcCCCEEee
Q 016730 317 V-TENEAVIDY---ALKKRDVKLVP 337 (384)
Q Consensus 317 ~-~ENe~vv~~---~l~~~~~~l~~ 337 (384)
. .+.+++.+. -|++.++++.+
T Consensus 185 ~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 185 STADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCChhe
Confidence 4 455555553 33445676654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=105.86 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=83.6
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+.+.++.+|||+|||+|+.+..++... ...|+|+|+|+.+++.++++....+ .++.+..+|....+ ++.++||
T Consensus 260 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--~~~~~fD 334 (475)
T PLN02336 260 DKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--YPDNSFD 334 (475)
T ss_pred HhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC--CCCCCEE
Confidence 34456788999999999999998888865 3589999999999999998876443 35888889987654 2236899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|++.. ++- +... ..+++..+.+.| ||||+++.++-..
T Consensus 335 ~I~s~~------~l~------h~~d----------~~~~l~~~~r~L----kpgG~l~i~~~~~ 372 (475)
T PLN02336 335 VIYSRD------TIL------HIQD----------KPALFRSFFKWL----KPGGKVLISDYCR 372 (475)
T ss_pred EEEECC------ccc------ccCC----------HHHHHHHHHHHc----CCCeEEEEEEecc
Confidence 999732 221 1111 235778888886 9999999886443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=93.14 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++.+|||+|||+|..+..+++... +.+.|+++|+|+.+++.++++++..+. .++.++.+|+..++. ..+|.|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCEEe
Confidence 4788999999999999998888753 357999999999999999999988764 368888999987652 4589887
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.-. + .+ ....+ ..+++.++.+.| ||||.++.+.-
T Consensus 128 ~~~~------l------~~-~~~~~-------~~~~l~~i~~~L----kpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFT------L------QF-LPPED-------RIALLTKIYEGL----NPNGVLVLSEK 162 (239)
T ss_pred eecc------h------hh-CCHHH-------HHHHHHHHHHhc----CCCeEEEEeec
Confidence 5321 1 11 11111 245788888885 99999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=98.59 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCceEEEeccCCChHHHHHHHHcc--CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~--~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+.+|||+|||+|..+..++..+. ....|+|+|+++..++.+++|.. ++.+.+.|+..... ..+||.|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~---~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF---DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc---cCCccEEEE
Confidence 467999999999999999888753 24689999999999999998853 46777889876442 258999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE--------EEeccCCc-cccH--HHH
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV--------YSTCSIMV-TENE--AVI 324 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv--------YsTCSi~~-~ENe--~vv 324 (384)
|||..-... ++. ... ..-...-..++..|.+++ ++|+.|+ ||-|-... +|+. .-+
T Consensus 121 NPPY~~~~~--~d~--~ar------~~g~~~~~~li~~A~~Ll----~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~ 186 (241)
T PHA03412 121 NPPFGKIKT--SDF--KGK------YTGAEFEYKVIERASQIA----RQGTFIIPQMSANFRYSGTHYFRQDESTTSSKC 186 (241)
T ss_pred CCCCCCccc--ccc--CCc------ccccHHHHHHHHHHHHHc----CCCEEEeCcccccCcccCccceeeccCcccHHH
Confidence 999865432 111 000 011234566888999864 8877654 55555442 3442 234
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
..++++-+..+.+
T Consensus 187 ~~~~~~~~~~~~~ 199 (241)
T PHA03412 187 KKFLDETGLEMNP 199 (241)
T ss_pred HHHHHhcCeeecC
Confidence 4566666655543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-08 Score=90.53 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=90.5
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
++|||+|||+|+.+..+++..++ ..|+++|+|+..++.+++++...|+. ++.+...|....+. .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~-- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGF-- 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehH--
Confidence 37999999999999999887743 68999999999999999999998875 47888888765432 2579999852
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC---Cccc---------cHHHHHH
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI---MVTE---------NEAVIDY 326 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi---~~~E---------Ne~vv~~ 326 (384)
+++. .......++..+.++| ||||+++.++..- .+.+ ....+..
T Consensus 75 ----~~l~----------------~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 130 (224)
T smart00828 75 ----EVIH----------------HIKDKMDLFSNISRHL----KDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAE 130 (224)
T ss_pred ----HHHH----------------hCCCHHHHHHHHHHHc----CCCCEEEEEEcccccCccccccccccccCCHHHHHH
Confidence 1110 0111345778888875 9999999876421 1111 1233445
Q ss_pred HHhcCCCEEeec
Q 016730 327 ALKKRDVKLVPC 338 (384)
Q Consensus 327 ~l~~~~~~l~~~ 338 (384)
++++.+++++..
T Consensus 131 ~l~~~Gf~~~~~ 142 (224)
T smart00828 131 LLARNNLRVVEG 142 (224)
T ss_pred HHHHCCCeEEEe
Confidence 666778877653
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=105.65 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=88.6
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.++..+|.+|||+|||+|..+..+++..++ +.|+|+|+|+.+++.+++++...+. ++.++++|+..++..+..++||.
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEE
Confidence 344557899999999999988888887654 7999999999999999998876664 57778899887764455578999
Q ss_pred EEEcCCCCC-CCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 253 VLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 253 VllDaPCSg-~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|++.++--- ...++. .+. .+.. ....++|..+.+.| ||||+++.+.-++
T Consensus 491 VVsn~vLH~L~syIp~-~g~--~f~~-------edl~kiLreI~RVL----KPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIEY-EGK--KFNH-------EVIKKGLQSAYEVL----KPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhccc-ccc--cccH-------HHHHHHHHHHHHHc----CCCcEEEEEeCcc
Confidence 997643100 000000 000 0011 23356788888886 9999999875333
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=89.70 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=68.6
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
+..+++.++++|||+|||+|..|..+++. .++|+|+|+++..++.+++++.. ..++.++++|+..++. ....|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~--~~~~~ 78 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL--PKLQP 78 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc--cccCC
Confidence 44566778899999999999999999887 26899999999999999998864 4578899999988753 22469
Q ss_pred CEEEEcCCC
Q 016730 251 DRVLLDAPC 259 (384)
Q Consensus 251 D~VllDaPC 259 (384)
|.|+.|+|.
T Consensus 79 d~vi~n~Py 87 (169)
T smart00650 79 YKVVGNLPY 87 (169)
T ss_pred CEEEECCCc
Confidence 999999994
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-08 Score=96.61 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=79.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+++.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++..-+..+ ..++.+...+...++.. ..||.
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~FD~ 191 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YAFDT 191 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CCcCE
Confidence 45678999999999999988777664 23479999999998876544333333 23566777777766532 57999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
|++ .|++-. ..++ ...|..+.+.| ||||.||.+|..+...+
T Consensus 192 V~s------~gvL~H------~~dp----------~~~L~el~r~L----kpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 192 VFS------MGVLYH------RKSP----------LEHLKQLKHQL----VIKGELVLETLVIDGDL 232 (314)
T ss_pred EEE------cchhhc------cCCH----------HHHHHHHHHhc----CCCCEEEEEEEEecCcc
Confidence 996 334322 2222 23567777775 99999999987665443
|
Known examples to date are restricted to the proteobacteria. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-09 Score=101.36 Aligned_cols=92 Identities=22% Similarity=0.212 Sum_probs=78.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC--
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-- 247 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~-- 247 (384)
+..+|.+++|..+||++||.||.|..+++..++.+.|+|+|.|+.+++.++++++. ..++.+++.|..++......
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence 34566788999999999999999999999987678999999999999999998876 46799999999887544322
Q ss_pred CCCCEEEEcCCCCCCC
Q 016730 248 NTVDRVLLDAPCSGTG 263 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G 263 (384)
..||.|++|.-+|..-
T Consensus 89 ~~vDgIl~DLGvSs~Q 104 (296)
T PRK00050 89 GKVDGILLDLGVSSPQ 104 (296)
T ss_pred CccCEEEECCCccccc
Confidence 2799999999998873
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-08 Score=93.69 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=90.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 248 (384)
.+..++..++.+|||+|||+|..+..+++..++ .+++++|. +..++.+++++++.|+. ++.++.+|+...+ + .
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~--~ 214 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y--P 214 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--C--C
Confidence 344556778899999999999999999998764 78999997 78999999999999985 5889999987533 2 3
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
.+|.|++- +++ ..+..+. -.++|+++.+.| ||||+++.....+...++
T Consensus 215 ~~D~v~~~------~~l-------h~~~~~~-------~~~il~~~~~~L----~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 215 EADAVLFC------RIL-------YSANEQL-------STIMCKKAFDAM----RSGGRLLILDMVIDDPEN 262 (306)
T ss_pred CCCEEEeE------hhh-------hcCChHH-------HHHHHHHHHHhc----CCCCEEEEEEeccCCCCC
Confidence 47998761 111 1222222 246788999886 999999988765544444
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-09 Score=104.08 Aligned_cols=169 Identities=20% Similarity=0.226 Sum_probs=101.5
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHc------cCCceEEEEeCCHHHHHHHHHHHHHcCCce-
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALM------KNTGLIYANEMKASRLKSLTANLHRMGVTN- 230 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~------~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~- 230 (384)
|.|+--..-+.+++.++.+.++++|+|.|||+|+....+...+ .....++|+|+++..+..++-|+.-.|+..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3333334445677888899999999999999999887777654 234689999999999999999987777543
Q ss_pred -EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCC--CchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 231 -TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 231 -v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r--~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
..+...|....+.......||.|+.+||.+..+.... ..+.+|... ...-...+..++.++++.| ++||+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~L----k~~G~ 178 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLL----KPGGR 178 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTE----EEEEE
T ss_pred cccccccccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhc----ccccc
Confidence 3577788765543322468999999999877643111 011122211 0000111223778888886 99999
Q ss_pred EEEEecc-CCcccc-HHHHH-HHHhcCCC
Q 016730 308 IVYSTCS-IMVTEN-EAVID-YALKKRDV 333 (384)
Q Consensus 308 lvYsTCS-i~~~EN-e~vv~-~~l~~~~~ 333 (384)
+++..-+ ++-..+ +.-+. +++++..+
T Consensus 179 ~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i 207 (311)
T PF02384_consen 179 AAIILPNGFLFSSSSEKKIRKYLLENGYI 207 (311)
T ss_dssp EEEEEEHHHHHGSTHHHHHHHHHHHHEEE
T ss_pred eeEEecchhhhccchHHHHHHHHHhhchh
Confidence 8776654 332232 44554 77776543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-08 Score=95.14 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=77.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..++.. ...|+|+|+|+.+++.++++++..++ ++.+...|...... .++||.|++-.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~---~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI---QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc---cCCccEEEEcc
Confidence 4459999999999999988874 36899999999999999999999998 78888888765432 36899999743
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+. ....+ ....++..+.+.| +|||++++.
T Consensus 193 vl~-------------~l~~~-------~~~~~l~~~~~~L----kpgG~~l~v 222 (287)
T PRK12335 193 VLM-------------FLNRE-------RIPAIIKNMQEHT----NPGGYNLIV 222 (287)
T ss_pred hhh-------------hCCHH-------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 210 01111 2345677777775 999997654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-08 Score=90.35 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=83.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.+...++.+|||+|||+|..+..++...+..+.++++|+++..+..++++.. ...++.+..+|+.+.+. ..+.||+
T Consensus 34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~--~~~~~D~ 109 (223)
T TIGR01934 34 LIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF--EDNSFDA 109 (223)
T ss_pred HhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC--CCCcEEE
Confidence 3344578999999999999999999887544689999999999999998876 33467888888887652 2368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|++.-. +..- .+ -..+++.+.+.| +|||+++..+.+..
T Consensus 110 i~~~~~------~~~~---------~~-------~~~~l~~~~~~L----~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 110 VTIAFG------LRNV---------TD-------IQKALREMYRVL----KPGGRLVILEFSKP 147 (223)
T ss_pred EEEeee------eCCc---------cc-------HHHHHHHHHHHc----CCCcEEEEEEecCC
Confidence 986311 1110 01 124678888875 99999998776543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=95.52 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=91.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.++.+|||+|+|.|..+..++...+ ..+|+++|+++..++.+++++...+. .++.++.+|+..+.... .++||.|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEE
Confidence 3467899999999999999988875 47899999999999999998765443 57889999997753322 258999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
|+- .+.+. |. .. ...+++..+.+.| +|||+++...++-.+ .....++.+.+.+
T Consensus 143 D~~-~~~~~----~~--~l-----------~t~efl~~~~~~L----~pgGvlvin~~~~~~-~~~~~l~~l~~~F 195 (262)
T PRK04457 143 DGF-DGEGI----ID--AL-----------CTQPFFDDCRNAL----SSDGIFVVNLWSRDK-RYDRYLERLESSF 195 (262)
T ss_pred eCC-CCCCC----cc--cc-----------CcHHHHHHHHHhc----CCCcEEEEEcCCCch-hHHHHHHHHHHhc
Confidence 963 22221 11 00 1246778888875 999999986544322 2344455444444
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-08 Score=99.75 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=80.9
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.+++|++|||+|||+|+.+.++++..+ ..|+++|+|+.+++.++++++. + ++.+...|...+ .+.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~l-----~~~ 228 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRDL-----NGQ 228 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhhc-----CCC
Confidence 34456778999999999999999999988753 5899999999999999998853 3 366777787654 267
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
||.|++-. ++.. ... .....++..+.++| ||||+++..+.+
T Consensus 229 fD~Ivs~~------~~eh-------vg~-------~~~~~~l~~i~r~L----kpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVG------MFEH-------VGP-------KNYRTYFEVVRRCL----KPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeC------chhh-------CCh-------HHHHHHHHHHHHHc----CCCcEEEEEEcc
Confidence 99998632 1110 001 11234677777775 999999987643
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=94.19 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=89.0
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc-
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL- 245 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~- 245 (384)
++...++....-.+||++|++.|.-|++++..++..|+|+++|.++++.+.+++++++.|+. +|.++.+|+.+....+
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 34344444444568999999999999999998887899999999999999999999999975 5899999987652221
Q ss_pred C----CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 G----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 ~----~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
. .++||.|++|+- + ......++.++++| +|||.||.=..
T Consensus 149 ~~~~~~~~fD~iFiDad------------------K-------~~Y~~y~~~~l~ll----~~GGviv~DNv 191 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD------------------K-------DNYINYHKRLIDLV----KVGGVIGYDNT 191 (247)
T ss_pred hccccCCcccEEEecCC------------------H-------HHhHHHHHHHHHhc----CCCeEEEEcCC
Confidence 1 258999999974 1 11234556667775 99999986543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=96.45 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=79.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+++.+|.+|||+|||+|..+..++..- ...|+++|.|+..+...+...+..+. .++.+...|+..++. .+.||
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~~FD 191 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LKAFD 191 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cCCcC
Confidence 4556678999999999999998888762 34799999999888665544444432 468888889887764 37899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.|++ .|++-+ ..++ ..+|..+.+.| +|||.++.+|-.
T Consensus 192 ~V~s------~~vl~H------~~dp----------~~~L~~l~~~L----kpGG~lvl~~~~ 228 (322)
T PRK15068 192 TVFS------MGVLYH------RRSP----------LDHLKQLKDQL----VPGGELVLETLV 228 (322)
T ss_pred EEEE------CChhhc------cCCH----------HHHHHHHHHhc----CCCcEEEEEEEE
Confidence 9996 234321 1122 24677777875 999999987643
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=91.06 Aligned_cols=133 Identities=16% Similarity=0.275 Sum_probs=93.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-ccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-~~~~~~~~fD~VllDa 257 (384)
...+||+|||.|...+.+|...++ ..++|+|++..++..+...+.+.|++|+.++++|+..+ ...+..+.+|.|.+.=
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 348999999999999999998875 78999999999999999999999999999999999984 3344457899999987
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH----h-cCC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL----K-KRD 332 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l----~-~~~ 332 (384)
| +|.-|-......+ .|..+|....+.| +|||.|...| .++....+.+ + +..
T Consensus 97 P---------DPWpK~rH~krRl-----~~~~fl~~~~~~L----~~gG~l~~~T------D~~~y~~~~~~~~~~~~~~ 152 (195)
T PF02390_consen 97 P---------DPWPKKRHHKRRL-----VNPEFLELLARVL----KPGGELYFAT------DVEEYAEWMLEQFEESHPG 152 (195)
T ss_dssp --------------SGGGGGGST-----TSHHHHHHHHHHE----EEEEEEEEEE------S-HHHHHHHHHHHHHHSTT
T ss_pred C---------CCCcccchhhhhc-----CCchHHHHHHHHc----CCCCEEEEEe------CCHHHHHHHHHHHHhcCcC
Confidence 7 3533322111111 3456777777775 9999998877 4444444333 3 246
Q ss_pred CEEe
Q 016730 333 VKLV 336 (384)
Q Consensus 333 ~~l~ 336 (384)
++.+
T Consensus 153 f~~~ 156 (195)
T PF02390_consen 153 FENI 156 (195)
T ss_dssp EEEE
T ss_pred eEEc
Confidence 6665
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-08 Score=90.19 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=76.8
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
....|.+ ..+++.-++.++||+|||.|.-+..||++ +-.|+|+|+|+..++.+++.+++.+++ +.+...|.....
T Consensus 16 ~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 16 TPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD 90 (192)
T ss_dssp ----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS
T ss_pred CCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc
Confidence 3333443 33444445669999999999999999986 358999999999999999999998987 888888877654
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
. .+.||.|++.. ++. ...++.+ .+++...-..+ +|||++++.|
T Consensus 91 ~---~~~yD~I~st~------v~~-------fL~~~~~-------~~i~~~m~~~~----~pGG~~li~~ 133 (192)
T PF03848_consen 91 F---PEEYDFIVSTV------VFM-------FLQRELR-------PQIIENMKAAT----KPGGYNLIVT 133 (192)
T ss_dssp ----TTTEEEEEEES------SGG-------GS-GGGH-------HHHHHHHHHTE----EEEEEEEEEE
T ss_pred c---cCCcCEEEEEE------Eec-------cCCHHHH-------HHHHHHHHhhc----CCcEEEEEEE
Confidence 2 26799998632 211 1111111 23445555554 9999999865
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-08 Score=92.21 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=83.2
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-c------eEEEEecCCCCcccccCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-T------NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~------~v~~~~~D~~~~~~~~~~ 247 (384)
.+-.|.+|||+|||.|-.|.+||.+- ..|+|+|+++.+++.+++. +.+.. . .+.+.+.|+....
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~----- 156 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT----- 156 (282)
T ss_pred cccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc-----
Confidence 34457889999999999999999873 6899999999999999998 44332 1 1334444544432
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+.||.|+| .++.+....-.+++...+++| ||||+|+.+| +|--...|+
T Consensus 157 ~~fDaVvc----------------------sevleHV~dp~~~l~~l~~~l----kP~G~lfitt------inrt~lS~~ 204 (282)
T KOG1270|consen 157 GKFDAVVC----------------------SEVLEHVKDPQEFLNCLSALL----KPNGRLFITT------INRTILSFA 204 (282)
T ss_pred cccceeee----------------------HHHHHHHhCHHHHHHHHHHHh----CCCCceEeee------hhhhHHHhh
Confidence 56999997 344455555567889999986 9999999988 455555555
Q ss_pred Hh
Q 016730 328 LK 329 (384)
Q Consensus 328 l~ 329 (384)
..
T Consensus 205 ~~ 206 (282)
T KOG1270|consen 205 GT 206 (282)
T ss_pred cc
Confidence 43
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.8e-08 Score=94.50 Aligned_cols=129 Identities=17% Similarity=0.104 Sum_probs=89.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++..+. ..|+++|.++.+++.++++.. ..++.++.+|+..++. ..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~--~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF--PTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC--CCCceeEEEEc
Confidence 46889999999999999888887643 689999999999999998764 3456778899887652 23689999973
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc--------------ccHH
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT--------------ENEA 322 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~--------------ENe~ 322 (384)
.. +.. ...+ .++|+++.+.| ||||+++.+.-. ++. -.++
T Consensus 186 ~~------L~~------~~d~----------~~~L~e~~rvL----kPGG~LvIi~~~-~p~~~~~r~~~~~~~~~~t~e 238 (340)
T PLN02490 186 GS------IEY------WPDP----------QRGIKEAYRVL----KIGGKACLIGPV-HPTFWLSRFFADVWMLFPKEE 238 (340)
T ss_pred Ch------hhh------CCCH----------HHHHHHHHHhc----CCCcEEEEEEec-CcchhHHHHhhhhhccCCCHH
Confidence 22 111 1111 23688888886 999999875321 111 1334
Q ss_pred HHHHHHhcCCCEEeec
Q 016730 323 VIDYALKKRDVKLVPC 338 (384)
Q Consensus 323 vv~~~l~~~~~~l~~~ 338 (384)
.+...+++.+|+.+.+
T Consensus 239 El~~lL~~aGF~~V~i 254 (340)
T PLN02490 239 EYIEWFTKAGFKDVKL 254 (340)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 4445666677776543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-07 Score=87.76 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=81.6
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+.+.++.+|||+|||+|..+..+++. ...++++|+++..++.+++++...+. .+.+...|...++.. ..++||
T Consensus 42 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~fD 116 (233)
T PRK05134 42 EHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE-HPGQFD 116 (233)
T ss_pred HhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh-cCCCcc
Confidence 3334567889999999999998888774 25799999999999999999988776 466667777655422 236899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+|++.-..... + . ...+|..+.+.| +|||+++.+++.
T Consensus 117 ~Ii~~~~l~~~------~------~----------~~~~l~~~~~~L----~~gG~l~v~~~~ 153 (233)
T PRK05134 117 VVTCMEMLEHV------P------D----------PASFVRACAKLV----KPGGLVFFSTLN 153 (233)
T ss_pred EEEEhhHhhcc------C------C----------HHHHHHHHHHHc----CCCcEEEEEecC
Confidence 99974321111 0 1 124677777775 999999988764
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-09 Score=96.00 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=97.7
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC--ceEEEEecCCCCcccccCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~--~~v~~~~~D~~~~~~~~~~~ 248 (384)
+....++.|++|||.|.|-|..++..++. +...|+.+|.|+.-++.++-|--.-++ .++.++.+|+.++-+.++++
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 34456788999999999999977654443 445899999999999888766432222 25788999999887778889
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEeccCCcc---ccHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSIMVT---ENEAVI 324 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCSi~~~---ENe~vv 324 (384)
+||+|+-|||- ++..- .+ .-.++.++..+.| ||||+|+ |..-+-..- .-..=|
T Consensus 205 sfDaIiHDPPR-------------fS~Ag-eL-----YseefY~El~RiL----krgGrlFHYvG~Pg~ryrG~d~~~gV 261 (287)
T COG2521 205 SFDAIIHDPPR-------------FSLAG-EL-----YSEEFYRELYRIL----KRGGRLFHYVGNPGKRYRGLDLPKGV 261 (287)
T ss_pred ccceEeeCCCc-------------cchhh-hH-----hHHHHHHHHHHHc----CcCCcEEEEeCCCCcccccCChhHHH
Confidence 99999999993 22111 11 2245666677775 9999998 554332222 223345
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
..-|++-+|+.+.
T Consensus 262 a~RLr~vGF~~v~ 274 (287)
T COG2521 262 AERLRRVGFEVVK 274 (287)
T ss_pred HHHHHhcCceeee
Confidence 5666777887654
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=86.27 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||+|||+|..+..+++.. ..++++|+++..+..+++++.+.+..++.+...|+...+... .++||.|++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehh
Confidence 47899999999999888777642 469999999999999999999888767788888876654322 26899999742
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
. + .. ......+|..+.+.| +|||.++.++|.
T Consensus 121 ~------l------~~----------~~~~~~~l~~~~~~L----~~gG~l~i~~~~ 151 (224)
T TIGR01983 121 V------L------EH----------VPDPQAFIRACAQLL----KPGGILFFSTIN 151 (224)
T ss_pred H------H------Hh----------CCCHHHHHHHHHHhc----CCCcEEEEEecC
Confidence 1 0 00 111235777777775 999999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.7e-08 Score=92.21 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=81.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcccccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
...+||++|+|.|+.+..+++.. +..+|+++|+|+..++.+++++..++ -.++.++.+|+..+... ..++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 45799999999999988887642 33689999999999999999987653 24588999999875432 2368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|++|++-- .| | ... + ...++++.+.+.| +|||.++..+-|
T Consensus 154 Ii~D~~dp-~~-----~-------~~~---l--~t~ef~~~~~~~L----~~gGvlv~~~~~ 193 (283)
T PRK00811 154 IIVDSTDP-VG-----P-------AEG---L--FTKEFYENCKRAL----KEDGIFVAQSGS 193 (283)
T ss_pred EEECCCCC-CC-----c-------hhh---h--hHHHHHHHHHHhc----CCCcEEEEeCCC
Confidence 99997410 01 1 011 1 2356677777775 999999875433
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=89.56 Aligned_cols=134 Identities=25% Similarity=0.210 Sum_probs=77.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc------ccccC--
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLG-- 246 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~------~~~~~-- 246 (384)
.+.++.+|||+||||||+|..+++.....+.|+|+|+.+. ....++..+.+|.... .....
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhcccc
Confidence 3335689999999999999999998755689999999876 1224555556665432 11111
Q ss_pred CCCCCEEEEcC--CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 247 LNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 247 ~~~fD~VllDa--PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
.+.||.|++|. +|+|... .... ...++....|.-|...| +|||.+|.-+-.. .+.++++
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~----------~d~~---~~~~l~~~~l~~a~~~L----~~gG~~v~K~~~~--~~~~~~~ 149 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRN----------IDEF---ISIRLILSQLLLALELL----KPGGTFVIKVFKG--PEIEELI 149 (181)
T ss_dssp TCSESEEEE-------SSHH----------SSHH---HHHHHHHHHHHHHHHHH----CTTEEEEEEESSS--TTSHHHH
T ss_pred ccCcceeccccccCCCCchh----------hHHH---HHHHHHHHHHHHHHhhh----cCCCEEEEEeccC--ccHHHHH
Confidence 25899999998 3333311 1111 12234444455666665 9999988655442 2334555
Q ss_pred HHHHhcC-CCEEeec
Q 016730 325 DYALKKR-DVKLVPC 338 (384)
Q Consensus 325 ~~~l~~~-~~~l~~~ 338 (384)
..+-..+ .++++++
T Consensus 150 ~~l~~~F~~v~~~Kp 164 (181)
T PF01728_consen 150 YLLKRCFSKVKIVKP 164 (181)
T ss_dssp HHHHHHHHHEEEEE-
T ss_pred HHHHhCCeEEEEEEC
Confidence 5444433 3555543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=91.52 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=65.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCce-EEEEe-cCCCCcccc--cCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCN-YDGNELPKV--LGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~-v~~~~-~D~~~~~~~--~~~~~fD~ 252 (384)
++.+|||+|||+|+....++....+ ..++|+|+|+..++.+++|++++ ++.+ +.+.. .|...+... ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 5689999999999998888887654 68999999999999999999999 7864 55543 343333211 12368999
Q ss_pred EEEcCCCCCCC
Q 016730 253 VLLDAPCSGTG 263 (384)
Q Consensus 253 VllDaPCSg~G 263 (384)
|+|+||.-.++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999975443
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-09 Score=85.97 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=61.0
Q ss_pred EEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~ 262 (384)
||+|||+|..+..+++..+ ..+++++|+|+.+++.+++++...+..+......+..+.......++||.|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~------ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS------ 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE------
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh------
Confidence 7999999999999999874 479999999999999999999998876655555554444332222589999972
Q ss_pred CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 263 G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
+++.. . .....+|.++.++| ||||.|
T Consensus 74 ~vl~~------l----------~~~~~~l~~~~~~L----~pgG~l 99 (99)
T PF08242_consen 74 NVLHH------L----------EDIEAVLRNIYRLL----KPGGIL 99 (99)
T ss_dssp -TTS------------------S-HHHHHHHHTTT-----TSS-EE
T ss_pred hhHhh------h----------hhHHHHHHHHHHHc----CCCCCC
Confidence 22211 1 11235778888875 999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=97.01 Aligned_cols=120 Identities=19% Similarity=0.146 Sum_probs=83.3
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
......+.+.++.+|||+|||+|..+..+++.. ..|+|+|+++.+++..+.... ...++.+++.|+......+..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCC
Confidence 344555666678899999999999999998863 589999999999987654211 245788888998643222334
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++||.|++..++. + .+..+ ..+++..+.+.| ||||++++...++.
T Consensus 102 ~~fD~I~~~~~l~------------~-l~~~~-------~~~~l~~~~r~L----k~gG~l~~~d~~~~ 146 (475)
T PLN02336 102 GSVDLIFSNWLLM------------Y-LSDKE-------VENLAERMVKWL----KVGGYIFFRESCFH 146 (475)
T ss_pred CCEEEEehhhhHH------------h-CCHHH-------HHHHHHHHHHhc----CCCeEEEEEeccCC
Confidence 7899999866521 1 11111 245777777775 99999988654443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=90.44 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=57.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcccccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+|.+|||+|||+|..+..++.. ...|+|+|+|+.+++.++++++..+ ..++.+...|...+ .+.||.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCE
Confidence 5789999999999999988874 3589999999999999999988763 23567777776543 268999
Q ss_pred EEE
Q 016730 253 VLL 255 (384)
Q Consensus 253 Vll 255 (384)
|++
T Consensus 216 Vv~ 218 (315)
T PLN02585 216 VTC 218 (315)
T ss_pred EEE
Confidence 986
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=85.57 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+.++.+|||+|||+|..+..++.. ...|+|+|+|+.++..+++++...+. .++.+...|+...+ ++||+|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEE
Confidence 456889999999999999988774 25899999999999999999988776 46888888887654 5799998
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
+
T Consensus 125 ~ 125 (219)
T TIGR02021 125 C 125 (219)
T ss_pred E
Confidence 6
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-08 Score=99.80 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC---
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN--- 248 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~--- 248 (384)
..++..++..+||+|||+|..++.+|+.. ++|++++++++.+.-++.|++.+|++|..++++-+.++-......
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCC
Confidence 34567788999999999999998888754 679999999999999999999999999999999666653222112
Q ss_pred CCC-EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 249 TVD-RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 249 ~fD-~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
+=+ ++++|||-.|.-. .+..+++.. +.--+++|.+|..+.+
T Consensus 454 ~~~~v~iiDPpR~Glh~-------------------------~~ik~l~~~----~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 454 SETLVAIIDPPRKGLHM-------------------------KVIKALRAY----KNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCceEEEECCCcccccH-------------------------HHHHHHHhc----cCccceEEEEcCHHHh
Confidence 334 8899999644421 122233322 5456999999998654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=87.98 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||+|||+|..+.++++..+. ..++++|+++..+..+++++. .++.++.+|....+. ..++||+|+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--EDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--CCCceeEEEEhh
Confidence 4578999999999999999988753 679999999999988887654 367778888877652 336899999864
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.. .+... -.++|..+.+.| ||||.+++++
T Consensus 107 ~l------------~~~~~----------~~~~l~~~~~~L----~~~G~l~~~~ 135 (240)
T TIGR02072 107 AL------------QWCDD----------LSQALSELARVL----KPGGLLAFST 135 (240)
T ss_pred hh------------hhccC----------HHHHHHHHHHHc----CCCcEEEEEe
Confidence 32 11111 124677777775 9999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-08 Score=89.24 Aligned_cols=117 Identities=25% Similarity=0.386 Sum_probs=84.9
Q ss_pred ceEEEeccCCChHHHHHHHHccC----Cc----eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc------ccc
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKN----TG----LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVL 245 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~----~g----~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~------~~~ 245 (384)
.+|+|+|||||+.+..+++.+-. .+ .|+|+|+.+- .-+..|..+.+|.+... ..+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 48999999999999999987632 22 3999997652 23567778889988752 335
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
.+++.|.|+||.. ||+..... +.+ ..|.+||..|+....++|||||.+|- -|+.-++...+-
T Consensus 112 ggekAdlVvcDGA----------PDvTGlHd---~DE--y~Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslLy 173 (294)
T KOG1099|consen 112 GGEKADLVVCDGA----------PDVTGLHD---LDE--YVQAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLLY 173 (294)
T ss_pred CCCCccEEEeCCC----------CCcccccc---HHH--HHHHHHHHHHHHHHhheecCCCeeeh---hhhccCchHHHH
Confidence 6679999999976 44433322 222 36788999999988889999999983 466666655443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.6e-08 Score=89.13 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=99.6
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC-CCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~-~~fD~VllDaP 258 (384)
..+||+|||.|...+++|+.-++ .-.+|+|+....+..+...+.+.|++|+.+++.|+..+...+.. ++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 48999999999999999998875 57999999999999999999999999999999999987555443 48999999777
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
||.-|-+.....+ +|..+|....+.| ||||.|-+.| .|+...++
T Consensus 129 ---------DPWpKkRH~KRRl-----~~~~fl~~~a~~L----k~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 129 ---------DPWPKKRHHKRRL-----TQPEFLKLYARKL----KPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred ---------CCCCCcccccccc-----CCHHHHHHHHHHc----cCCCEEEEEe------cCHHHHHH
Confidence 4655444333333 5677888888885 9999999988 56666655
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=85.65 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=75.9
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..|....-.++||+|||.|-.|..||.+. ..++|+|+++..++.+++++.. ..+|.+...|.... ++.++||
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~---~P~~~FD 108 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF---WPEGRFD 108 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT------SS-EE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC---CCCCCee
Confidence 34554556789999999999999998875 4799999999999999999874 47899999888654 3458999
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCC-HHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKS-LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~-~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.|++ |.. .+..+ .+++ +..+......| +|||.||..+-
T Consensus 109 LIV~----SEV---------lYYL~~~~~L-------~~~l~~l~~~L----~pgG~LV~g~~ 147 (201)
T PF05401_consen 109 LIVL----SEV---------LYYLDDAEDL-------RAALDRLVAAL----APGGHLVFGHA 147 (201)
T ss_dssp EEEE----ES----------GGGSSSHHHH-------HHHHHHHHHTE----EEEEEEEEEEE
T ss_pred EEEE----ehH---------hHcCCCHHHH-------HHHHHHHHHHh----CCCCEEEEEEe
Confidence 9996 333 33333 2333 34556666665 99999999753
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=88.89 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=76.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCC---CE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTV---DR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~f---D~ 252 (384)
.++.+|||+|||+|.||..+++.+.....++++|+|+++++.+++++.... --++..+++|........ ..+ +.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~--~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP--PEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--cccccCCe
Confidence 467899999999999999999887534689999999999999999887632 124667789987642222 222 33
Q ss_pred --EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 253 --VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 253 --VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
++++.+ .|.+ .+++ ...+|+.+.+.| +|||.++...=
T Consensus 140 ~~~~~gs~---~~~~----------~~~e-------~~~~L~~i~~~L----~pgG~~lig~d 178 (301)
T TIGR03438 140 LGFFPGST---IGNF----------TPEE-------AVAFLRRIRQLL----GPGGGLLIGVD 178 (301)
T ss_pred EEEEeccc---ccCC----------CHHH-------HHHHHHHHHHhc----CCCCEEEEecc
Confidence 333222 2221 2222 356788888875 99999997543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-07 Score=88.51 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=75.4
Q ss_pred CCceEEEeccCCCh----HHHHHHHHccC----CceEEEEeCCHHHHHHHHHHHH------Hc-------------C---
Q 016730 178 EKERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTANLH------RM-------------G--- 227 (384)
Q Consensus 178 ~g~~VLD~cagpGg----kt~~la~~~~~----~g~V~a~D~~~~rl~~l~~n~~------r~-------------g--- 227 (384)
++.+|||+|||+|- .++.+++..+. ...|+|+|+|+.+++.+++.+- .+ |
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 46799999999996 45555565432 4689999999999999987531 00 0
Q ss_pred ----C-ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccC
Q 016730 228 ----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (384)
Q Consensus 228 ----~-~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l 302 (384)
+ .+|.+...|....+. ..++||.|+|- . + ....+. ..+.+++....+.|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~cr----n--v-------l~yf~~-------~~~~~~l~~l~~~L---- 232 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP--PLGDFDLIFCR----N--V-------LIYFDE-------PTQRKLLNRFAEAL---- 232 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC--ccCCCCEEEec----h--h-------HHhCCH-------HHHHHHHHHHHHHh----
Confidence 1 257888888887643 23789999961 1 1 111111 24567888888886
Q ss_pred CCCcEEEEEec
Q 016730 303 KSGGYIVYSTC 313 (384)
Q Consensus 303 kpGG~lvYsTC 313 (384)
+|||+|+....
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999997643
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-07 Score=86.86 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=81.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccCCCCCCEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
...+||++|+|.|+.+..++... ....++++|+++..++.+++++..++ -.++.+...|+..+.... .++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEE
Confidence 34599999999999887776653 23689999999999999999886653 245777788887643222 2689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++|++-. .+ |. ..+ ...+.++.+.+.| +|||.++..++|..
T Consensus 150 i~D~~~~-~~-----~~-------~~l-----~~~ef~~~~~~~L----~pgG~lv~~~~~~~ 190 (270)
T TIGR00417 150 IVDSTDP-VG-----PA-------ETL-----FTKEFYELLKKAL----NEDGIFVAQSESPW 190 (270)
T ss_pred EEeCCCC-CC-----cc-------cch-----hHHHHHHHHHHHh----CCCcEEEEcCCCcc
Confidence 9998621 11 10 000 1245666777775 99999998877643
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-07 Score=89.48 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=79.4
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH--H---HHc--CCceEEEEecCCCCcccccCCCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--L---HRM--GVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n--~---~r~--g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+||++|+|.|+....+++. ++..+|+++|+|+..++.+++. + .+. .-.++.++.+|+..+.... .+.||
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YD 228 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYD 228 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCcc
Confidence 459999999999866555543 3346899999999999999962 2 222 2356889999999764322 36899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHH
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~v 323 (384)
+|++|.|= |... . .. .-...+++..+.+.| +|||++|.-+-|. .....+
T Consensus 229 VIIvDl~D---------P~~~---~---~~--~LyT~EFy~~~~~~L----kPgGV~V~Qs~sp--~~~~~~ 277 (374)
T PRK01581 229 VIIIDFPD---------PATE---L---LS--TLYTSELFARIATFL----TEDGAFVCQSNSP--ADAPLV 277 (374)
T ss_pred EEEEcCCC---------cccc---c---hh--hhhHHHHHHHHHHhc----CCCcEEEEecCCh--hhhHHH
Confidence 99999861 1100 0 00 112256777777775 9999988764433 344444
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-07 Score=85.85 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=75.2
Q ss_pred CcchhhhcCCCCCc--eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc------CC---ceEEEEe
Q 016730 167 SFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM------GV---TNTIVCN 235 (384)
Q Consensus 167 s~l~~~~L~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~------g~---~~v~~~~ 235 (384)
....+.++++++|. +|||++||.|.-++.++.+ ++.|+++|.++.....++++++++ +. .++.+++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 45678888899998 9999999999999998887 357999999999999999999996 42 5688889
Q ss_pred cCCCCcccccCCCCCCEEEEcCCC
Q 016730 236 YDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+|+..+..... ..||+|.+|||.
T Consensus 152 ~da~~~L~~~~-~~fDVVYlDPMf 174 (250)
T PRK10742 152 ASSLTALTDIT-PRPQVVYLDPMF 174 (250)
T ss_pred CcHHHHHhhCC-CCCcEEEECCCC
Confidence 99887644332 479999999995
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-07 Score=88.17 Aligned_cols=72 Identities=13% Similarity=0.280 Sum_probs=57.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++.+|||+|||+|..+..++...+.. ..|+++|+|+.+++.++++. .++.+..+|+..++ +..+.||.|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp--~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLP--FADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCC--CcCCceeEEE
Confidence 456789999999999999998876542 37999999999999887642 45777788988766 3347899998
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
.
T Consensus 157 ~ 157 (272)
T PRK11088 157 R 157 (272)
T ss_pred E
Confidence 5
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-07 Score=92.49 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=74.2
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~ 247 (384)
..+..+.+.++++|||+|||+|..|..+++.. ..|+|+|+|+..++.+++++...+ ..++.++++|+.... +
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--~-- 99 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE--F-- 99 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--c--
Confidence 45556677899999999999999999988863 579999999999999999998877 467999999998754 2
Q ss_pred CCCCEEEEcCCCCCCC
Q 016730 248 NTVDRVLLDAPCSGTG 263 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G 263 (384)
..||.|+.|+|...+.
T Consensus 100 ~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 100 PYFDVCVANVPYQISS 115 (294)
T ss_pred cccCEEEecCCcccCc
Confidence 5799999999986553
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=96.41 Aligned_cols=136 Identities=12% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH--HHHc-----CCceEEEEecCCCCcccccCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--LHRM-----GVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n--~~r~-----g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
++..+|||+|+|.|+.+..+++. +...+|+++|+|++.++.++++ +..+ .-.++.++++|++++.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCC
Confidence 45679999999999988887764 3226899999999999999984 3322 1246888999998754322 368
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc-ccHHHHHHHH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-ENEAVIDYAL 328 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~-ENe~vv~~~l 328 (384)
||.|++|+|-.. .|..... ...++++.+.+.| ||||.++..++|-... +.-..+...+
T Consensus 374 fDvIi~D~~~~~------~~~~~~L-----------~t~ef~~~~~~~L----~pgG~lv~~~~~~~~~~~~~~~i~~~l 432 (521)
T PRK03612 374 FDVIIVDLPDPS------NPALGKL-----------YSVEFYRLLKRRL----APDGLLVVQSTSPYFAPKAFWSIEATL 432 (521)
T ss_pred CCEEEEeCCCCC------Ccchhcc-----------chHHHHHHHHHhc----CCCeEEEEecCCcccchHHHHHHHHHH
Confidence 999999987311 1111001 1245667777775 9999999877654422 2112233444
Q ss_pred hcCCCEE
Q 016730 329 KKRDVKL 335 (384)
Q Consensus 329 ~~~~~~l 335 (384)
++.++..
T Consensus 433 ~~~gf~v 439 (521)
T PRK03612 433 EAAGLAT 439 (521)
T ss_pred HHcCCEE
Confidence 5556643
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=85.80 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=79.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.+-.+|.|+|||||..|-.|+++.+. ..|+++|.|+.+++.+++.+ .++.+..+|.+.... ...+|+++.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p---~~~~dllfa 98 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP---EQPTDLLFA 98 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC---CCccchhhh
Confidence 445679999999999999999999975 79999999999999986653 577888899887543 368999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|- +.|-++. -++|.+.+..| .|||.|..---
T Consensus 99 NAv--------------lqWlpdH--------~~ll~rL~~~L----~Pgg~LAVQmP 130 (257)
T COG4106 99 NAV--------------LQWLPDH--------PELLPRLVSQL----APGGVLAVQMP 130 (257)
T ss_pred hhh--------------hhhcccc--------HHHHHHHHHhh----CCCceEEEECC
Confidence 874 3333333 24666777775 99999986543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.1e-07 Score=86.73 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--C--ceEEEEecCCCCcccccCCCCCCE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V--TNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--~--~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
....+||++|+|.|+....+++. ++..+|+.+|+|+..++.+++.+...+ . .++.++.+|+..+-.....++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34679999999999988888765 334689999999999999999886643 2 358999999976643222368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|++|.+-. .| | ... -...++++.+.+.| +|||.++.-
T Consensus 169 Ii~D~~dp-~~-----~-------~~~-----L~t~ef~~~~~~~L----~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDP-VG-----P-------AQE-----LFEKPFFESVARAL----RPGGVVCTQ 205 (308)
T ss_pred EEEcCCCC-CC-----c-------hhh-----hhHHHHHHHHHHhc----CCCcEEEEC
Confidence 99998621 11 1 000 12356777777775 999999753
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=88.82 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=70.3
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
...+..+++.+|++|||+|||+|..|..+++. ...|+++|+++..++.+++++.. ..++.++++|+..++ +
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~--~-- 89 (258)
T PRK14896 19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD--L-- 89 (258)
T ss_pred HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC--c--
Confidence 34455667788999999999999999999987 25899999999999999988865 457999999998765 2
Q ss_pred CCCCEEEEcCCCC
Q 016730 248 NTVDRVLLDAPCS 260 (384)
Q Consensus 248 ~~fD~VllDaPCS 260 (384)
..||.|+.++|..
T Consensus 90 ~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 PEFNKVVSNLPYQ 102 (258)
T ss_pred hhceEEEEcCCcc
Confidence 4589999999964
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=77.91 Aligned_cols=146 Identities=24% Similarity=0.291 Sum_probs=103.6
Q ss_pred EEEeCCc-CcchhhhcC------CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 160 YMLQSAS-SFLPVMALA------PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 160 ~~~Qd~s-s~l~~~~L~------~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
|-.=++- |-|++..|+ +++|++||=+||++|....|++...+ .|.|+|+|.++.....+-..+++ -.|+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~ 127 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNII 127 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCce
Confidence 4444443 556666653 67899999999999999999999998 69999999999988888777765 35788
Q ss_pred EEecCCCCccccc-CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHH-HHHchhccCCCCcEEE-
Q 016730 233 VCNYDGNELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA-AIDMVDANSKSGGYIV- 309 (384)
Q Consensus 233 ~~~~D~~~~~~~~-~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~-a~~~L~~~lkpGG~lv- 309 (384)
.+..|++.+.... --+.+|+|..|.. ...|.+|+.. |-.+ ||+||+++
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~F----Lk~~G~~~i 178 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFF----LKKGGYVVI 178 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEEecC-------------------------CchHHHHHHHHHHHh----cccCCeEEE
Confidence 8889998764321 1167999999975 1246666654 4445 59999554
Q ss_pred -EEeccCCcccc-HHHHHHHH---hcCCCEEee
Q 016730 310 -YSTCSIMVTEN-EAVIDYAL---KKRDVKLVP 337 (384)
Q Consensus 310 -YsTCSi~~~EN-e~vv~~~l---~~~~~~l~~ 337 (384)
.=.-|+...+. +++.+.-. +..+|++.+
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 45777877555 44444333 344677655
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=86.50 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=103.1
Q ss_pred CCCCcccccceEEEeCCcCc---chh---hhcCCCCCceEEEeccCCChHHHHHHHHccCC-------------------
Q 016730 149 IGATPEYMAGFYMLQSASSF---LPV---MALAPQEKERVIDMAAAPGGKTTYIAALMKNT------------------- 203 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~---l~~---~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~------------------- 203 (384)
.+..+.++.||=.-+.++.. +++ .+.+.++++.++|-.||+|...+..|.+..+-
T Consensus 156 ttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~ 235 (381)
T COG0116 156 TTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKD 235 (381)
T ss_pred CCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHH
Confidence 44457888997655655532 222 22356778899999999999888766655321
Q ss_pred ------------c-------eEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCCCCC
Q 016730 204 ------------G-------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263 (384)
Q Consensus 204 ------------g-------~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G 263 (384)
+ .++|+|+|+..++.++.|+.+.|+.. |.+..+|++.+...+ +.+|+|++|||+ |
T Consensus 236 lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPY---G 310 (381)
T COG0116 236 LWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPY---G 310 (381)
T ss_pred HHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCc---c
Confidence 1 47899999999999999999999965 889999999987654 689999999996 2
Q ss_pred cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 264 ~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
. +. -+. .....++.++...+-+.+ +.-++.|++|
T Consensus 311 e-------Rl-g~~---~~v~~LY~~fg~~lk~~~----~~ws~~v~tt 344 (381)
T COG0116 311 E-------RL-GSE---ALVAKLYREFGRTLKRLL----AGWSRYVFTT 344 (381)
T ss_pred h-------hc-CCh---hhHHHHHHHHHHHHHHHh----cCCceEEEEc
Confidence 1 11 111 233446677777766664 6667777766
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=77.45 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=89.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcc------cccCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELP------KVLGLNT 249 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~------~~~~~~~ 249 (384)
.|+++|||+|||||..+...-++.++.|.|.++|+-. -.-+..+.++.+ |.++.. ..++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 5799999999999999999999998889999999632 122233444444 666532 1234578
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH-HHH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID-YAL 328 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~-~~l 328 (384)
+|+||.|..--.+|+--+ |-..+..+=...|.-|+.++ +|+|.+| |-+..-+.+.-.+ .+.
T Consensus 137 VdvVlSDMapnaTGvr~~-----------Dh~~~i~LC~s~l~~al~~~----~p~g~fv---cK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIR-----------DHYRSIELCDSALLFALTLL----IPNGSFV---CKLWDGSEEALLQRRLQ 198 (232)
T ss_pred ccEEEeccCCCCcCcchh-----------hHHHHHHHHHHHHHHhhhhc----CCCcEEE---EEEecCCchHHHHHHHH
Confidence 999999987788886322 22233344445667777775 9999998 6666555554444 444
Q ss_pred hcC-CCEEeecC
Q 016730 329 KKR-DVKLVPCG 339 (384)
Q Consensus 329 ~~~-~~~l~~~~ 339 (384)
+.+ .++.+.+.
T Consensus 199 ~~f~~Vk~vKP~ 210 (232)
T KOG4589|consen 199 AVFTNVKKVKPD 210 (232)
T ss_pred HHhhhcEeeCCc
Confidence 444 56666543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=80.41 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------------ceEEEEecCCCCc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGNEL 241 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------------~~v~~~~~D~~~~ 241 (384)
.+|.+|||+|||.|.-+.+||+. .-.|+|+|+|+..++.+.. +.|+ .++.+.++|+..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 46789999999999999999874 3589999999999997633 2222 2577888999887
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+... .+.||.|+- --| +- ...++ ...+.+....++| ||||++++.|-+.
T Consensus 107 ~~~~-~~~fD~i~D-~~~-----~~-------~l~~~-------~R~~~~~~l~~lL----kpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAAD-LGPVDAVYD-RAA-----LI-------ALPEE-------MRQRYAAHLLALL----PPGARQLLITLDY 155 (213)
T ss_pred Cccc-CCCcCEEEe-chh-----hc-------cCCHH-------HHHHHHHHHHHHc----CCCCeEEEEEEEc
Confidence 5321 257998864 211 00 11111 1233566666665 9999988877655
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.5e-07 Score=78.89 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=81.7
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+|||+|||.|..-..|++--- .+.++++|-+++.++.++.-+++-|.+| |.+...|.... .++ .++||+|+=-.--
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-SGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-ccceeEEeecCce
Confidence 899999999987666665422 3569999999999999999999999988 99999998875 333 3778888621100
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
-.|.-+|+-.-.+. .. -+...-++ |+|||++|..+|-++..|=.+.+
T Consensus 147 ---DAisLs~d~~~~r~--------~~---Y~d~v~~l----l~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 147 ---DAISLSPDGPVGRL--------VV---YLDSVEKL----LSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred ---eeeecCCCCcccce--------ee---ehhhHhhc----cCCCcEEEEEecCccHHHHHHHH
Confidence 00111222111100 00 12222333 59999999999999877655443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-07 Score=89.28 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=68.2
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.+..+++.+|++|||+|||+|..|..+++.. ..|+|+|+|+.+++.+++++.. .++.++++|+..++.. ...
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~--~~~ 105 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLS--ELQ 105 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHH--HcC
Confidence 4455677889999999999999999999874 3799999999999999987743 5789999999886421 111
Q ss_pred CCEEEEcCCCCCC
Q 016730 250 VDRVLLDAPCSGT 262 (384)
Q Consensus 250 fD~VllDaPCSg~ 262 (384)
+|.|+.++|..-+
T Consensus 106 ~~~vv~NlPY~is 118 (272)
T PRK00274 106 PLKVVANLPYNIT 118 (272)
T ss_pred cceEEEeCCccch
Confidence 5999999997443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=90.74 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=92.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
..+..+||+|||.|..++++|...++ ..++|+|++...+..+...+.+.|++|+.+++.|+..+...+...++|.|.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 35778999999999999999998875 68999999999999999999999999999988887655555556789999998
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
=| +|.-|-......+ .|..+|....+.| ||||.+-+.|
T Consensus 425 FP---------DPWpKkrh~krRl-----~~~~fl~~~~~~L----k~gG~i~~~T 462 (506)
T PRK01544 425 FP---------DPWIKNKQKKKRI-----FNKERLKILQDKL----KDNGNLVFAS 462 (506)
T ss_pred CC---------CCCCCCCCccccc-----cCHHHHHHHHHhc----CCCCEEEEEc
Confidence 77 4544333222222 4556677777775 9999998887
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-06 Score=89.71 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCcccccceEEEeCCcCc---chhhhc---CC-CCCceEEEeccCCChHHHHHHHHcc--------------------
Q 016730 149 IGATPEYMAGFYMLQSASSF---LPVMAL---AP-QEKERVIDMAAAPGGKTTYIAALMK-------------------- 201 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~---l~~~~L---~~-~~g~~VLD~cagpGgkt~~la~~~~-------------------- 201 (384)
....+.++.|+=..+.++.. +++.+| .. ++++.++|.+||+|...+..|.+..
T Consensus 154 ~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~ 233 (702)
T PRK11783 154 LSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHD 233 (702)
T ss_pred CCCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCC
Confidence 44557788886555555542 333333 22 5688999999999998776554311
Q ss_pred ---------------------CCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 202 ---------------------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 202 ---------------------~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
....|+|+|+++..++.++.|++..|+.+ +.+.++|+.+++.....+.||.|++|||.
T Consensus 234 ~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 234 EALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 11369999999999999999999999975 78889999887543323579999999996
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=80.08 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=94.3
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc-c
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-P 242 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~-~ 242 (384)
.-.++...++..-...++||+|.-+|.-++..|..++.+|+|+++|+++.-.+...+..++.|+.. +.++.+++.+- .
T Consensus 60 d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 60 DKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 334566666665567799999999999999999999999999999999999999999999999864 78888887653 1
Q ss_pred ---cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 243 ---KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 243 ---~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
...+.+.||.+++|+= . . .....+.++++++ |+||.|++-.-
T Consensus 140 ~l~~~~~~~tfDfaFvDad-----------------K-~-------nY~~y~e~~l~Ll----r~GGvi~~DNv 184 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVDAD-----------------K-D-------NYSNYYERLLRLL----RVGGVIVVDNV 184 (237)
T ss_pred HHHhcCCCCceeEEEEccc-----------------h-H-------HHHHHHHHHHhhc----ccccEEEEecc
Confidence 1123478999999973 1 1 1125678888986 99999998653
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=78.63 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++..++ +.++|+|+|+.+++.+++++ .++.+..+|+.. + +..++||.|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~--~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-P--FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-C--CCCCCEEEEEE
Confidence 456789999999999999999887643 68999999999999998764 245566778776 2 33478999997
Q ss_pred c
Q 016730 256 D 256 (384)
Q Consensus 256 D 256 (384)
.
T Consensus 112 ~ 112 (204)
T TIGR03587 112 K 112 (204)
T ss_pred C
Confidence 3
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=77.82 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. .++.+..+|.... .+.||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-----LGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-----cCCcCEEEE
Confidence 46789999999999999888765 25699999999999999999988887 4678888884321 267999987
Q ss_pred c
Q 016730 256 D 256 (384)
Q Consensus 256 D 256 (384)
.
T Consensus 134 ~ 134 (230)
T PRK07580 134 L 134 (230)
T ss_pred c
Confidence 3
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.5e-07 Score=77.76 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
-+|..++|+|||.|..+ ++..|.+...|+++|+++..++...+|++.+.++ +.+++.|..++.. ..+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~--~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLEL--KGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhc--cCCeEeeEEec
Confidence 36899999999999966 4455555578999999999999999999999885 4777888877643 23889999999
Q ss_pred CCCCCCCcCCCCc
Q 016730 257 APCSGTGVISKDE 269 (384)
Q Consensus 257 aPCSg~G~~~r~p 269 (384)
|| .|+-.++.
T Consensus 122 pp---FGTk~~~a 131 (185)
T KOG3420|consen 122 PP---FGTKKKGA 131 (185)
T ss_pred CC---CCcccccc
Confidence 99 46544443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=80.08 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccC---CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
...++.+|||+|||+|..+..|+...+. ...|+|+|+++.+++.++++....++ .+...|+..++. ..++||
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~l~~--~~~~fD 131 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV---TFRQAVSDELVA--EGERFD 131 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC---eEEEEecccccc--cCCCcc
Confidence 3356789999999999999888876532 24899999999999999887655444 344444444432 236899
Q ss_pred EEEEc
Q 016730 252 RVLLD 256 (384)
Q Consensus 252 ~VllD 256 (384)
.|++.
T Consensus 132 ~V~~~ 136 (232)
T PRK06202 132 VVTSN 136 (232)
T ss_pred EEEEC
Confidence 99984
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.4e-06 Score=77.08 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------------ceEEEEecCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGN 239 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------------~~v~~~~~D~~ 239 (384)
.+.++.+|||++||.|.-+.+||+. +-.|+|+|+|+..++.+.. +.|+ .++.+.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456789999999999999999874 3589999999999998642 2222 35777889988
Q ss_pred CcccccCCCCCCEEEE
Q 016730 240 ELPKVLGLNTVDRVLL 255 (384)
Q Consensus 240 ~~~~~~~~~~fD~Vll 255 (384)
.+.... ...||.|+-
T Consensus 108 ~l~~~~-~~~fd~v~D 122 (218)
T PRK13255 108 ALTAAD-LADVDAVYD 122 (218)
T ss_pred CCCccc-CCCeeEEEe
Confidence 774321 257888873
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=84.50 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=76.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---CC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GL 247 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~~ 247 (384)
..+|.+++|..++|+.+|-||.|..|++.+++ |+|+|+|.|+..+..++++++.++ .++.+++++..++.... ..
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCC
Confidence 45677889999999999999999999998875 999999999999999999988764 46888888888765433 22
Q ss_pred CCCCEEEEcCCCCCC
Q 016730 248 NTVDRVLLDAPCSGT 262 (384)
Q Consensus 248 ~~fD~VllDaPCSg~ 262 (384)
.+||.|++|--+|+.
T Consensus 91 ~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 91 TKIDGILVDLGVSSP 105 (305)
T ss_pred CcccEEEEeccCCHh
Confidence 579999999988876
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=80.00 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=77.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-----c-----------------------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-----T----------------------- 229 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-----~----------------------- 229 (384)
.+..+||+||-.|..|.+||...+. ..|+++|||+.+++.++++++..-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3567999999999999999999875 5799999999999999999864310 0
Q ss_pred -------e-------EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 016730 230 -------N-------TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (384)
Q Consensus 230 -------~-------v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~ 295 (384)
| .+....|.. ++....||+||| +.--..+.+.|..+.+ ++++.+++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl----~~~~~~fDiIlc---------LSiTkWIHLNwgD~GL-------~~ff~kis 196 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL----DMIQPEFDIILC---------LSITKWIHLNWGDDGL-------RRFFRKIS 196 (288)
T ss_pred ccccCCcchhcccccEEEecchhh----hhccccccEEEE---------EEeeeeEecccccHHH-------HHHHHHHH
Confidence 0 111111111 123468999997 2222345556777766 66788899
Q ss_pred HchhccCCCCcEEEEEe
Q 016730 296 DMVDANSKSGGYIVYST 312 (384)
Q Consensus 296 ~~L~~~lkpGG~lvYsT 312 (384)
++| .|||+||.--
T Consensus 197 ~ll----~pgGiLvvEP 209 (288)
T KOG2899|consen 197 SLL----HPGGILVVEP 209 (288)
T ss_pred Hhh----CcCcEEEEcC
Confidence 986 9999999743
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=80.19 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=53.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
++.+|||+|||+|..+.++++.. .+.|+|+|+|+++++.+++.. ..+++|+..++ +.+++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp--~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALP--FRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCC--CCCCCEEEEEe
Confidence 47899999999999999888875 368999999999999987531 23568888776 34588999997
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-06 Score=78.71 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=76.6
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEe-cCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~-~D~~~~~~~~~~~~fD~ 252 (384)
+.+-.|.+|||+||+.|..+..|+.. +...|+|+|.+..-+....---+-+|.+...... .-...++. . +.||.
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FDt 185 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFDT 185 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcCE
Confidence 33457999999999999998877765 3458999999987666544444455554433322 23334454 2 78999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
|++ .||+-+ ++++- ..|...-+.| ++||.||.=|=-+.-+|+
T Consensus 186 VF~------MGVLYH------rr~Pl----------~~L~~Lk~~L----~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 186 VFS------MGVLYH------RRSPL----------DHLKQLKDSL----RPGGELVLETLVIDGDEN 227 (315)
T ss_pred EEE------eeehhc------cCCHH----------HHHHHHHHhh----CCCCEEEEEEeeecCCCc
Confidence 997 787643 23332 2344444554 999999998876655554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=74.78 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=67.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||.|..+..++.. ..+++++|+++..++. .++.....+...... ..++||.|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF--PDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHC--HSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc--cccchhhHhh
Confidence 467889999999999988888654 2489999999999887 222333333332221 2378999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
. .++..-|+ -..+|....++| ||||+++.++-..
T Consensus 85 ~------~~l~~~~d----------------~~~~l~~l~~~L----kpgG~l~~~~~~~ 118 (161)
T PF13489_consen 85 N------DVLEHLPD----------------PEEFLKELSRLL----KPGGYLVISDPNR 118 (161)
T ss_dssp E------SSGGGSSH----------------HHHHHHHHHHCE----EEEEEEEEEEEBT
T ss_pred H------HHHhhccc----------------HHHHHHHHHHhc----CCCCEEEEEEcCC
Confidence 3 22222111 235778888886 9999999988554
|
... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.3e-06 Score=74.94 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=54.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
++||.+|||+|||.|..-.+|.+. .....+++|++++.+....++ |+ .++.+|...--..+++.+||.|++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----Gv---~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----GV---SVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----CC---CEEECCHHHhHhhCCCCCccEEeh
Confidence 468999999999999877666664 246899999999987665442 44 467888876555566789999997
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-06 Score=78.01 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=75.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-ccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-~~~~~~~~fD~VllD 256 (384)
.|.+|| |-|-+-.+...+.+......|+.+|+|+.-++-+++.+++.|++ +.....|.++. |..+ .++||+++.|
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL-RGKFDVFFTD 119 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT-SS-BSEEEE-
T ss_pred cCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH-hcCCCEEEeC
Confidence 578897 55566655555555555578999999999999999999999998 99999999975 4333 3799999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc--ccHHHHHHHHhcCCCE
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT--ENEAVIDYALKKRDVK 334 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~--ENe~vv~~~l~~~~~~ 334 (384)
||.+-.|+ .-+|.+++..| |.-|..+|-..|..+. +--..|+.++-+.++-
T Consensus 120 PPyT~~G~-----------------------~LFlsRgi~~L----k~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 120 PPYTPEGL-----------------------KLFLSRGIEAL----KGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHH-----------------------HHHHHHHHHTB-----STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred CCCCHHHH-----------------------HHHHHHHHHHh----CCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 99655543 33678889886 6556556666665431 1113466666677876
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
+.++
T Consensus 173 i~di 176 (243)
T PF01861_consen 173 ITDI 176 (243)
T ss_dssp EEEE
T ss_pred HHHH
Confidence 6654
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=79.62 Aligned_cols=128 Identities=25% Similarity=0.290 Sum_probs=95.8
Q ss_pred Ccchhhhc------CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~L------~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
|-|++..+ -++||.+||-++||+|..-.|++..+++.|.|+|+|.+...=..|...+++ -+|+..+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCC
Confidence 44555554 368999999999999999999999999999999999987655555544433 2678888899998
Q ss_pred cccc-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHH-HHHHHchhccCCCCcEEEEE---eccC
Q 016730 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI-LAAIDMVDANSKSGGYIVYS---TCSI 315 (384)
Q Consensus 241 ~~~~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL-~~a~~~L~~~lkpGG~lvYs---TCSi 315 (384)
+.++ +--.-+|+|+.|.| .| .|.+|+ .+|..+| |+||.+|.| .|+=
T Consensus 217 P~KYRmlVgmVDvIFaDva---------qp----------------dq~RivaLNA~~FL----k~gGhfvisikancid 267 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA---------QP----------------DQARIVALNAQYFL----KNGGHFVISIKANCID 267 (317)
T ss_pred chheeeeeeeEEEEeccCC---------Cc----------------hhhhhhhhhhhhhh----ccCCeEEEEEeccccc
Confidence 6542 11247999999987 12 233444 4556664 999998865 7888
Q ss_pred CccccHHHHH
Q 016730 316 MVTENEAVID 325 (384)
Q Consensus 316 ~~~ENe~vv~ 325 (384)
....+|.|-+
T Consensus 268 stv~ae~vFa 277 (317)
T KOG1596|consen 268 STVFAEAVFA 277 (317)
T ss_pred ccccHHHHHH
Confidence 8899999876
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=77.90 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=80.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
.+.+-|+|||+|-.+...|... -+|+|++.++.+...+.+|++-.|..|+.++++|++.+.. +..|+|+|..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f----e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF----ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc----cccceeHHHH-
Confidence 3689999999999888777663 4799999999999999999999999999999999998753 6789998732
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv 309 (384)
-|-.-+-.-|-..+++++++| |..++++
T Consensus 105 -------------------lDTaLi~E~qVpV~n~vleFL----r~d~tii 132 (252)
T COG4076 105 -------------------LDTALIEEKQVPVINAVLEFL----RYDPTII 132 (252)
T ss_pred -------------------hhHHhhcccccHHHHHHHHHh----hcCCccc
Confidence 122234456777888888886 8888775
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=87.71 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-------CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-c--cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-------TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-V--LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-------~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~-~--~~~ 247 (384)
.+.+|||.|||+|+..+.++..+.. ...++++|+++..+..++.|+..++.-.+.+.+.|...... . ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999999988876632 14689999999999999999988872233444444332110 0 012
Q ss_pred CCCCEEEEcCCCCCCC
Q 016730 248 NTVDRVLLDAPCSGTG 263 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G 263 (384)
+.||+|+.+||.....
T Consensus 111 ~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 111 DLFDIVITNPPYGRLK 126 (524)
T ss_pred CcccEEEeCCCccccC
Confidence 5799999999986654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.1e-06 Score=79.52 Aligned_cols=81 Identities=19% Similarity=0.118 Sum_probs=66.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.+..+++.++++|||+|||+|..|..|++... .|+++|+|+..++.+++++.. ..++.++++|+..++. ..
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~----~~ 91 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL----PD 91 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh----hH
Confidence 44556677899999999999999999998753 599999999999999987743 4578899999987653 24
Q ss_pred CC---EEEEcCCC
Q 016730 250 VD---RVLLDAPC 259 (384)
Q Consensus 250 fD---~VllDaPC 259 (384)
|| .|+.+.|.
T Consensus 92 ~d~~~~vvsNlPy 104 (253)
T TIGR00755 92 FPKQLKVVSNLPY 104 (253)
T ss_pred cCCcceEEEcCCh
Confidence 66 99999883
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.2e-06 Score=74.59 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=69.9
Q ss_pred hhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceE-EEEeCCHHHHHHHHHHHHHcC----------CceEEEEecC
Q 016730 171 VMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMG----------VTNTIVCNYD 237 (384)
Q Consensus 171 ~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V-~a~D~~~~rl~~l~~n~~r~g----------~~~v~~~~~D 237 (384)
..+|+ .+||...||+|+|+|..|+.++.++...|.+ +++|..++-++..++|+...- -....++.+|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 44566 7899999999999999999999888766654 999999999999999997653 1246777899
Q ss_pred CCCcccccCCCCCCEEEEcCC
Q 016730 238 GNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaP 258 (384)
++..-... .+||+|.|-|.
T Consensus 153 gr~g~~e~--a~YDaIhvGAa 171 (237)
T KOG1661|consen 153 GRKGYAEQ--APYDAIHVGAA 171 (237)
T ss_pred ccccCCcc--CCcceEEEccC
Confidence 99875433 79999999654
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5e-05 Score=67.72 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=90.2
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
.+.++++|||+|-.++.+++...+....+|.|+++..++...+.++.+++. +.++..|...-. ..+++|+++.+||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l---~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGL---RNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhh---ccCCccEEEECCC
Confidence 568999999999999999998887788999999999999999999988875 555566665432 2379999999999
Q ss_pred CCCCC--cC-CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 259 CSGTG--VI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 259 CSg~G--~~-~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
+--+- =+ ...-+..|.-. +.-++..+.....+.-.|.|.|.+...+|.-+. -+++++ +++..++
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG--------~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--p~ei~k-~l~~~g~ 186 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGG--------KDGREVTDRLLPQVPDILSPRGVFYLVALRANK--PKEILK-ILEKKGY 186 (209)
T ss_pred cCcCCcccchhHHHHHHHhcC--------cchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--HHHHHH-HHhhccc
Confidence 62221 00 00001112211 112223333333333335899988777664321 134444 6666543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-06 Score=82.19 Aligned_cols=105 Identities=27% Similarity=0.318 Sum_probs=75.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+-+|||+-||+|--++-.+.-..+...|+++|+|++.++.+++|++.+|+.. +.+.+.|+..+-. .....||.|=+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 34589999999999999888776555799999999999999999999999986 7888889876542 23478999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
||= | ++ -..|+.|++.+ |.||.| +.|||
T Consensus 128 DPf----G------------Sp----------~pfldsA~~~v----~~gGll-~vTaT 155 (377)
T PF02005_consen 128 DPF----G------------SP----------APFLDSALQAV----KDGGLL-CVTAT 155 (377)
T ss_dssp --S----S------------------------HHHHHHHHHHE----EEEEEE-EEEE-
T ss_pred CCC----C------------Cc----------cHhHHHHHHHh----hcCCEE-EEecc
Confidence 972 2 11 23789999987 777655 66665
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-06 Score=81.07 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=92.4
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHH-------HHHHHHHHcCCce--EEEEecC
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLK-------SLTANLHRMGVTN--TIVCNYD 237 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~-------~l~~n~~r~g~~~--v~~~~~D 237 (384)
|.+.+....++||+.|.|-..|+|+.-...|.. ++.|++.|||-..+. .++.|++.+|... ..++.+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 344555556889999999999999965443333 368999999987766 5789999999654 5666789
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCC---cCCCCchhhcc--------CCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTG---VISKDESVKTS--------KSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G---~~~r~p~~~~~--------~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
..+.+ +.....||.|+||||+.--- .+.++..++.. ........+..+--.+|.-+.+.| .-||
T Consensus 274 ~sn~~-~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L----~~gg 348 (421)
T KOG2671|consen 274 FSNPP-LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL----VDGG 348 (421)
T ss_pred ccCcc-hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh----hcCc
Confidence 88765 34457899999999972111 11111111110 011223345556667788888876 9999
Q ss_pred EEEEEec
Q 016730 307 YIVYSTC 313 (384)
Q Consensus 307 ~lvYsTC 313 (384)
++|+---
T Consensus 349 rlv~w~p 355 (421)
T KOG2671|consen 349 RLVFWLP 355 (421)
T ss_pred eEEEecC
Confidence 9997544
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=74.94 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=72.9
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
-.+...++++++.||++|.|.|+.|..|++.. ..|+|+|+|+..+..+++.+. ...|+.++++|+....... -.
T Consensus 21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~-l~ 94 (259)
T COG0030 21 KIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS-LA 94 (259)
T ss_pred HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh-hc
Confidence 35677788889999999999999999999874 479999999999999998876 3468999999998875321 01
Q ss_pred CCCEEEEcCCCCCCC
Q 016730 249 TVDRVLLDAPCSGTG 263 (384)
Q Consensus 249 ~fD~VllDaPCSg~G 263 (384)
.+++|+.+-|+.-+.
T Consensus 95 ~~~~vVaNlPY~Iss 109 (259)
T COG0030 95 QPYKVVANLPYNISS 109 (259)
T ss_pred CCCEEEEcCCCcccH
Confidence 689999999986553
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-05 Score=70.52 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=74.2
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|+|+|+|.|-=++-+|-..++ ..++.+|.+.+|+.-++.-...+|++|+.+++..+.+ . .....||.|+.=|=+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~--~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P--EYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T--TTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c--ccCCCccEEEeehhc-
Confidence 7999999999998888877754 7899999999999999999999999999999988876 1 123789999874321
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+. ..++.-+..++ ++||+++.--
T Consensus 126 ---------------~l----------~~l~~~~~~~l----~~~G~~l~~K 148 (184)
T PF02527_consen 126 ---------------PL----------DKLLELARPLL----KPGGRLLAYK 148 (184)
T ss_dssp ---------------SH----------HHHHHHHGGGE----EEEEEEEEEE
T ss_pred ---------------CH----------HHHHHHHHHhc----CCCCEEEEEc
Confidence 11 23555666665 9999887643
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-06 Score=77.99 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=71.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccccc--CCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~--~~~~fD~Vl 254 (384)
.-+.|+|..||-||-|+..+... ..|+++|+|+-++..+++|++-+|+.+ |.++++|..++...+ ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 34689999999999998877653 479999999999999999999999975 899999988764322 123477999
Q ss_pred EcCCCCCCCcCCC
Q 016730 255 LDAPCSGTGVISK 267 (384)
Q Consensus 255 lDaPCSg~G~~~r 267 (384)
+-||-+|.|..+.
T Consensus 171 ~sppwggp~y~~~ 183 (263)
T KOG2730|consen 171 LSPPWGGPSYLRA 183 (263)
T ss_pred cCCCCCCcchhhh
Confidence 9999999997654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=73.50 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=81.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..+-.++||+|||+|-.+-.|-.+. ..++++|+|..+++.+.+. |+-. ...+.|+..+......++||.|..
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhhccCCcccchhh
Confidence 3446899999999999887776665 3699999999999988653 2211 112344433333234578999853
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc------------cHHH
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE------------NEAV 323 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E------------Ne~v 323 (384)
.|+.-..-.-..++-.+...| +|||.+.+|.=+.-.+- .+.-
T Consensus 195 ----------------------aDVl~YlG~Le~~~~~aa~~L----~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~Y 248 (287)
T COG4976 195 ----------------------ADVLPYLGALEGLFAGAAGLL----APGGLFAFSVETLPDDGGFVLGPSQRYAHSESY 248 (287)
T ss_pred ----------------------hhHHHhhcchhhHHHHHHHhc----CCCceEEEEecccCCCCCeecchhhhhccchHH
Confidence 222222222234566666764 99999999987764442 2444
Q ss_pred HHHHHhcCCCEEeec
Q 016730 324 IDYALKKRDVKLVPC 338 (384)
Q Consensus 324 v~~~l~~~~~~l~~~ 338 (384)
|...++..+++++.+
T Consensus 249 Vr~~l~~~Gl~~i~~ 263 (287)
T COG4976 249 VRALLAASGLEVIAI 263 (287)
T ss_pred HHHHHHhcCceEEEe
Confidence 555556666666654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-05 Score=75.09 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=61.2
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..+||-+|+|.|+.+..+++.. ...+|+++|+|+..++.+++.+...+ -.++.++.+|++.+-... .++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEE
Confidence 4689999999999887776643 23589999999999999999876432 246889999999864322 36899999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
+|++
T Consensus 182 ~D~~ 185 (336)
T PLN02823 182 GDLA 185 (336)
T ss_pred ecCC
Confidence 9974
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.4e-05 Score=68.26 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC-cccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~-~~~~~~~~~fD~Vll 255 (384)
+++.+|||+|||+|..+..+++.. ...++++|+++..++.++. . ++.++.+|+.. ++. +..++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~-~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA-FPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc-cCCCCcCEEEE
Confidence 467899999999999988877653 2468999999998887753 1 34566677654 222 23468999998
Q ss_pred cCC
Q 016730 256 DAP 258 (384)
Q Consensus 256 DaP 258 (384)
..+
T Consensus 82 ~~~ 84 (194)
T TIGR02081 82 SQT 84 (194)
T ss_pred hhH
Confidence 543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.8e-05 Score=80.69 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=107.7
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccC---CceEEEEeCCHHHHHHHHHHHHHcCCc-eEEE
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVT-NTIV 233 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~ 233 (384)
|.|+-=..-+.+.+.++.|++..+|.|-|||+||.-+..+..++. ...+++.|+++.....++-|+--.|+. ++.+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 555444455678889999999999999999999988887777753 367999999999999999999988887 4556
Q ss_pred EecCCCCccccc---CCCCCCEEEEcCCCCCCCcCCCCchhhccC--CHHHHHHHHHHH-HHHHHHHHHchhccCCCCcE
Q 016730 234 CNYDGNELPKVL---GLNTVDRVLLDAPCSGTGVISKDESVKTSK--SLEDIQKCSYLQ-KQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 234 ~~~D~~~~~~~~---~~~~fD~VllDaPCSg~G~~~r~p~~~~~~--~~~~i~~l~~~Q-~~iL~~a~~~L~~~lkpGG~ 307 (384)
.++|...-+... ....||.|+.+||.|+.|...-.-+..+.+ ............ ...+.+.+..+ +|||+
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l----~~~g~ 321 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL----KPGGR 321 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc----CCCce
Confidence 566655444331 336799999999998776543210000000 000000000001 34566777775 88764
Q ss_pred E--EEEeccCCccccHHHHH-HHHh
Q 016730 308 I--VYSTCSIMVTENEAVID-YALK 329 (384)
Q Consensus 308 l--vYsTCSi~~~ENe~vv~-~~l~ 329 (384)
. |...=.++..-+|..|. .+++
T Consensus 322 aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 322 AAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EEEEecCCcCcCCCchHHHHHHHHh
Confidence 3 23333334444688887 5555
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.5e-05 Score=69.01 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--C-ceEEEEecCCCC-c-ccccCCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYDGNE-L-PKVLGLNTVD 251 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--~-~~v~~~~~D~~~-~-~~~~~~~~fD 251 (384)
.+|.+||++|||.|--++.++.+. +...|++.|.++ -+..++.|+++++ . .++.+...|=.+ . ........||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999998888777774 346899999999 9999999999887 2 345555544322 1 1222336899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
.||. .|+-+. .+. -..++.....+ |+++|. +|..+.....+....++
T Consensus 122 ~Ila-------------sDv~Y~--~~~-------~~~L~~tl~~l----l~~~~~-vl~~~~~R~~~~~~F~~ 168 (173)
T PF10294_consen 122 VILA-------------SDVLYD--EEL-------FEPLVRTLKRL----LKPNGK-VLLAYKRRRKSEQEFFD 168 (173)
T ss_dssp EEEE-------------ES--S---GGG-------HHHHHHHHHHH----BTT-TT-EEEEEE-S-TGGCHHHH
T ss_pred EEEE-------------ecccch--HHH-------HHHHHHHHHHH----hCCCCE-EEEEeCEecHHHHHHHH
Confidence 9986 222222 121 22344444444 588888 56666665544444433
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.4e-05 Score=67.96 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=86.9
Q ss_pred eEEEeCCcCcchhhhcCCCC--CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 159 FYMLQSASSFLPVMALAPQE--KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 159 ~~~~Qd~ss~l~~~~L~~~~--g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
-..||-+-+.-+..+|+.++ ..-|||+|||+|--+..+.+ ..-..+++|+|+.+|+.+.+ .++. -.++.+
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~ 100 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVE--RELE---GDLILC 100 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHH--hhhh---cCeeee
Confidence 35678776666777777655 56799999999987765544 23478999999999999986 3322 123345
Q ss_pred CCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHH---HHHHHHHHHchhccCCCCcEEEEEec
Q 016730 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQ---KQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q---~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|.-.-. .+..+.||.||.= |+ +.|.-+.. .....-+ ..++...+.. |++|++.|+-
T Consensus 101 DMG~Gl-pfrpGtFDg~ISI---SA---------vQWLcnA~--~s~~~P~~Rl~~FF~tLy~~----l~rg~raV~Q-- 159 (270)
T KOG1541|consen 101 DMGEGL-PFRPGTFDGVISI---SA---------VQWLCNAD--KSLHVPKKRLLRFFGTLYSC----LKRGARAVLQ-- 159 (270)
T ss_pred ecCCCC-CCCCCccceEEEe---ee---------eeeecccC--ccccChHHHHHHHhhhhhhh----hccCceeEEE--
Confidence 544321 1445899988751 11 11211110 0001111 2234444555 4999999863
Q ss_pred cCCccccHHHHHHHHhc
Q 016730 314 SIMVTENEAVIDYALKK 330 (384)
Q Consensus 314 Si~~~ENe~vv~~~l~~ 330 (384)
+..||+++++-+++.
T Consensus 160 --fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 160 --FYPENEAQIDMIMQQ 174 (270)
T ss_pred --ecccchHHHHHHHHH
Confidence 568999999987764
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.1e-05 Score=69.50 Aligned_cols=113 Identities=8% Similarity=-0.002 Sum_probs=74.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH------------HHcCCceEEEEecCCCCccc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL------------HRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~------------~r~g~~~v~~~~~D~~~~~~ 243 (384)
+.+|.+||+.+||.|.-..+||+. +-.|+|+|+|+..++.+.+.. .+..-.++.+.++|...++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 345789999999999999999885 347999999999999875521 11222368899999998753
Q ss_pred c-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 244 V-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 244 ~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
. ...+.||.|.- - ...-.+ +|+. -.+..++..++ |+|||+++..|-..
T Consensus 118 ~~~~~~~fD~VyD-r--a~~~Al--pp~~---------------R~~Y~~~l~~l----L~pgg~llll~~~~ 166 (226)
T PRK13256 118 IANNLPVFDIWYD-R--GAYIAL--PNDL---------------RTNYAKMMLEV----CSNNTQILLLVMEH 166 (226)
T ss_pred cccccCCcCeeee-e--hhHhcC--CHHH---------------HHHHHHHHHHH----hCCCcEEEEEEEec
Confidence 1 11257999753 1 111111 1211 22344555555 49999999887544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.7e-05 Score=72.13 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=85.5
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC----ceEEEEecCCCCcccccCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----TNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~----~~v~~~~~D~~~~~~~~~~ 247 (384)
.++.+ ...+||=+|.|.|+.+..+...- .-..|+++|+|+.-++.+++-+..... .++.++..|+..+-.....
T Consensus 71 ~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~ 148 (246)
T PF01564_consen 71 LLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE 148 (246)
T ss_dssp HHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS
T ss_pred hhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC
Confidence 33334 46799999999999887766543 235899999999999999988766433 3688899999887544332
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
.+||+|++|++= ..| |... ..+ ++.++.+.+.| +|||.++.-..|. ..++..+..+
T Consensus 149 ~~yDvIi~D~~d-p~~-----~~~~-l~t-----------~ef~~~~~~~L----~~~Gv~v~~~~~~--~~~~~~~~~i 204 (246)
T PF01564_consen 149 EKYDVIIVDLTD-PDG-----PAPN-LFT-----------REFYQLCKRRL----KPDGVLVLQAGSP--FLHPELFKSI 204 (246)
T ss_dssp T-EEEEEEESSS-TTS-----CGGG-GSS-----------HHHHHHHHHHE----EEEEEEEEEEEET--TTTHHHHHHH
T ss_pred CcccEEEEeCCC-CCC-----Cccc-ccC-----------HHHHHHHHhhc----CCCcEEEEEccCc--ccchHHHHHH
Confidence 289999999872 111 1111 222 34566666765 9999999765333 2344555444
Q ss_pred Hh
Q 016730 328 LK 329 (384)
Q Consensus 328 l~ 329 (384)
.+
T Consensus 205 ~~ 206 (246)
T PF01564_consen 205 LK 206 (246)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=69.54 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=90.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceE-EEEecCCCCcccccC-CCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVLG-LNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v-~~~~~D~~~~~~~~~-~~~fD~Vl 254 (384)
..-+|||+|||+|.--+-+.+..+. .-.|.-.|.++.-++..++.++..|+.++ .+.++|+.+...... ....+.++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3458999999999876665555543 34799999999999999999999999987 999999987533221 13568887
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
+ +|++---|| .+.+ ++.|...... +.|||+|||+.=-.||+ -+.|++.|..|
T Consensus 215 V------sGL~ElF~D------n~lv-------~~sl~gl~~a----l~pgG~lIyTgQPwHPQ--le~IAr~LtsH 266 (311)
T PF12147_consen 215 V------SGLYELFPD------NDLV-------RRSLAGLARA----LEPGGYLIYTGQPWHPQ--LEMIARVLTSH 266 (311)
T ss_pred E------ecchhhCCc------HHHH-------HHHHHHHHHH----hCCCcEEEEcCCCCCcc--hHHHHHHHhcc
Confidence 6 454322222 1111 2234444454 49999999988777775 35678888654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.8e-05 Score=68.68 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=85.2
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE-EEecCCCCcccccCCCCCCEEEEcC-
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNELPKVLGLNTVDRVLLDA- 257 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~-~~~~D~~~~~~~~~~~~fD~VllDa- 257 (384)
..||++|||||.---..- +.+..+|+++|.++++-+.+...++.....++. ++.+++.+++.. .+.++|.|++--
T Consensus 78 ~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l-~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL-ADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-ccCCeeeEEEEEE
Confidence 358999999997433221 124468999999999999999988887666776 889999998854 458999998631
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~ 330 (384)
=||-. .+.+.|++.-++| ||||++++.. |..+--.-.++++++
T Consensus 155 LCSve-----------------------~~~k~L~e~~rlL----RpgG~iifiE---Hva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 155 LCSVE-----------------------DPVKQLNEVRRLL----RPGGRIIFIE---HVAGEYGFWNRILQQ 197 (252)
T ss_pred EeccC-----------------------CHHHHHHHHHHhc----CCCcEEEEEe---cccccchHHHHHHHH
Confidence 23322 2456788888875 9999999864 444444555566653
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=64.73 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=86.1
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLN 248 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~ 248 (384)
...++..|--||++|.|+|-.|-.|++.+-....++++|.|++-...+.+.. ..+.++++|+..+.. ...+.
T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCC
Confidence 3356888999999999999999999998777779999999999988877653 345688999887642 23457
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.||.|++-.|--.. .. ..-.+||+.+...| ++||.+|--|-+
T Consensus 117 ~~D~viS~lPll~~-------------P~-------~~~iaile~~~~rl----~~gg~lvqftYg 158 (194)
T COG3963 117 FFDSVISGLPLLNF-------------PM-------HRRIAILESLLYRL----PAGGPLVQFTYG 158 (194)
T ss_pred eeeeEEeccccccC-------------cH-------HHHHHHHHHHHHhc----CCCCeEEEEEec
Confidence 89999997772111 11 11245788888875 999999977766
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.5e-05 Score=72.59 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=81.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+..|||+|||+|-.++..|+. +..+|+|+|.|.-. +.+.+.+..+|+.+ ++++.+...++. ++.+++|.|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~--LP~eKVDiIvSE 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE--LPVEKVDIIVSE 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe--cCccceeEEeeh
Confidence 5889999999999988876665 24689999977655 89999999999987 677777776652 223789999862
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
|- ...-+...+|+..+-.=.+.|+|||.+.=++|+++-
T Consensus 135 ----------------WM-------Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 135 ----------------WM-------GYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred ----------------hh-------hHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 21 122233445555544434457999999988888764
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.8e-06 Score=79.82 Aligned_cols=91 Identities=23% Similarity=0.313 Sum_probs=65.0
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc----
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---- 245 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---- 245 (384)
+...|.++++..++|+.-|-||.|..|++..++ ++|+|+|.|+..++.++++++.. -.++.+++.+..++...+
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHcc
Confidence 456677899999999999999999999999887 99999999999999998887755 346888888887764332
Q ss_pred CCCCCCEEEEcCCCCCC
Q 016730 246 GLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~ 262 (384)
...++|.||+|--+|..
T Consensus 90 ~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 90 GINKVDGILFDLGVSSM 106 (310)
T ss_dssp TTS-EEEEEEE-S--HH
T ss_pred CCCccCEEEEccccCHH
Confidence 22589999999988865
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.6e-05 Score=74.09 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-------C---ceEEEEecCCCCc--cccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------V---TNTIVCNYDGNEL--PKVL 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-------~---~~v~~~~~D~~~~--~~~~ 245 (384)
++.+|||+|||-||-..-.... +-+.++++|++...++.++++.+.++ . -...++..|...- ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999965533332 34689999999999999999884332 1 1345667777643 1112
Q ss_pred CC--CCCCEEEEcCCCCCCCcCCCCchhhccC-CHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 246 GL--NTVDRVLLDAPCSGTGVISKDESVKTSK-SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 246 ~~--~~fD~VllDaPCSg~G~~~r~p~~~~~~-~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.. ..||+|=|=-. +.+.. +.+. -+.+|.++...| +|||+++-+|.+
T Consensus 140 ~~~~~~FDvVScQFa------------lHY~Fese~~-------ar~~l~Nvs~~L----k~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA------------LHYAFESEEK-------ARQFLKNVSSLL----KPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-------------GGGGGSSHHH-------HHHHHHHHHHTE----EEEEEEEEEEE-
T ss_pred cccCCCcceeehHHH------------HHHhcCCHHH-------HHHHHHHHHHhc----CCCCEEEEEecC
Confidence 22 48999976221 22222 3332 256889999986 999999987753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.5e-05 Score=72.11 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=36.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHH-HHHH
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS-LTAN 222 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~-l~~n 222 (384)
.+|.+|||+|||||+.|..+++. +...|+|+|+++.++.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 36889999999999999999886 34689999999987764 4443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=67.22 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=83.0
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
...+..+..+|||+|.|.|..+..+++..++ .+++..|. +..++.+++ ..++.++.+|..+. ++ . +|
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~---~P-~-~D 160 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP---LP-V-AD 160 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC---CS-S-ES
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHHhh---hc-c-cc
Confidence 3345556678999999999999999998875 68999997 666776666 56799999998732 22 3 99
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC--cEEEEEeccCCccccHH
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG--GYIVYSTCSIMVTENEA 322 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG--G~lvYsTCSi~~~ENe~ 322 (384)
+|++ ..+...|+.++. .+||+++...+ +|| |+|+....-+.....+.
T Consensus 161 ~~~l-------------~~vLh~~~d~~~-------~~iL~~~~~al----~pg~~g~llI~e~~~~~~~~~~ 209 (241)
T PF00891_consen 161 VYLL-------------RHVLHDWSDEDC-------VKILRNAAAAL----KPGKDGRLLIIEMVLPDDRTGP 209 (241)
T ss_dssp EEEE-------------ESSGGGS-HHHH-------HHHHHHHHHHS----EECTTEEEEEEEEEECSSSSSH
T ss_pred ceee-------------ehhhhhcchHHH-------HHHHHHHHHHh----CCCCCCeEEEEeeccCCCCCCc
Confidence 9998 334556777665 67899999986 999 99998887665544443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=69.50 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=65.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
...++||+|||-|+.|..++.+.+ .|+|.|.|+.|..+++ +-|.+ ++.. .+... .+.+||+|-|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~----~kg~~---vl~~--~~w~~--~~~~fDvIsc-- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLS----KKGFT---VLDI--DDWQQ--TDFKFDVISC-- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHH----hCCCe---EEeh--hhhhc--cCCceEEEee--
Confidence 356899999999999999999875 5999999998866554 44654 2221 12221 1258999975
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.-++.|. ..-..+|+.+.+.| +|+|+++.+
T Consensus 158 ----LNvLDRc----------------~~P~~LL~~i~~~l----~p~G~lilA 187 (265)
T PF05219_consen 158 ----LNVLDRC----------------DRPLTLLRDIRRAL----KPNGRLILA 187 (265)
T ss_pred ----hhhhhcc----------------CCHHHHHHHHHHHh----CCCCEEEEE
Confidence 3334332 12345788888876 999999876
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.7e-05 Score=81.78 Aligned_cols=110 Identities=24% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc------ccccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~------~~~~~~~~ 249 (384)
++++..|||+||||||.....++.|+.++.|+++|+-+-+ -+.++.....|.+.- .......+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 3578889999999999999999999988899999987632 133444444554421 11122246
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.|+||-|..- .+-..|..+ +..|..|-.+|+++....|+.||.+|--
T Consensus 111 advVLhDgap----------nVg~~w~~D-----A~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 111 ADVVLHDGAP----------NVGGNWVQD-----AFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CcEEeecCCC----------ccchhHHHH-----HHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 7999999642 222233322 2344445445544444445999996643
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.1e-05 Score=65.94 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=41.0
Q ss_pred EEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
|++|++.|..|.++++.++..+ +++++|..+. .+..++.+++.++. ++.++.+|..+....+..++||.|++|++-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 5789999999999999887654 7999999986 44555566656664 588999988765333324689999999861
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
+. ..-..-+..+++.| +|||.+|+
T Consensus 80 ~~-----------------------~~~~~dl~~~~~~l----~~ggviv~ 103 (106)
T PF13578_consen 80 SY-----------------------EAVLRDLENALPRL----APGGVIVF 103 (106)
T ss_dssp -H-----------------------HHHHHHHHHHGGGE----EEEEEEEE
T ss_pred CH-----------------------HHHHHHHHHHHHHc----CCCeEEEE
Confidence 11 12233466777775 99999986
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=74.83 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=78.1
Q ss_pred CceEEEeccCCChHHHHHHHHc---cCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~---~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+..|||+|||+|-.+...++.. +...+|+|+|.++.....+++.+++.|. +.|+++++|.+++... +++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 4679999999999876554432 3346999999999999999888888888 4599999999987543 6899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec--cCCccccHHHHH
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC--SIMVTENEAVID 325 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC--Si~~~ENe~vv~ 325 (384)
... .|.+.-+. +--+.|..+-++| ||||+++=+.+ -+.|-+.+..-+
T Consensus 264 SEl----LGsfg~nE----------------l~pE~Lda~~rfL----kp~Gi~IP~~~t~ylaPiss~~l~~ 312 (448)
T PF05185_consen 264 SEL----LGSFGDNE----------------LSPECLDAADRFL----KPDGIMIPSSYTSYLAPISSPKLYQ 312 (448)
T ss_dssp E-------BTTBTTT----------------SHHHHHHHGGGGE----EEEEEEESSEEEEEEEEEE-HHHHH
T ss_pred Eec----cCCccccc----------------cCHHHHHHHHhhc----CCCCEEeCcchhhEEEEeeCHHHHH
Confidence 753 23322211 1123466666664 99999973222 344555555443
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=72.18 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=96.1
Q ss_pred HHHHHHhCC-HHHHHHHHHHcCC--CCCeEEEEcCCCCCHH------------HHHHHHHHcCCcccCCCcccc-ccEEE
Q 016730 79 IGALVEMFP-PVELMELIESFEK--PRPICLRTNTLKTRRR------------DLADVLINRGVNLDPLSKWSK-VGLVV 142 (384)
Q Consensus 79 ~~~l~~~~~-~~~~~~~~~~~~~--~~p~~~RvN~~k~~~~------------~~~~~L~~~g~~~~~~~~~~~-~~~~~ 142 (384)
+....+.+| .+.+..++++... +.--.+||-+..++.. -+.+.|.+.|+-.....+-.+ ..+.+
T Consensus 73 ~~~~~~~lp~~DRi~pi~~~~~~~~~~~~~l~vE~pDtne~k~l~~fcrkf~~pLr~aL~~~g~l~~~~~~~~p~lh~~f 152 (357)
T PRK11760 73 VGELLKDLPPEDRISPIVAALQGVVPKFGELRVETPDTNEGKELSKFCRKFTVPLRQALRKAGVLTAKENPKRPVLHVFF 152 (357)
T ss_pred hhhHhhcCCcccchHHHHHHHhhcccccceeEEecCCCccchHHHHHHHHhHHHHHHHHHhCCccCCccCCCCcEEEEEE
Confidence 455566666 4677788888753 3334588876655432 233567777875433211111 11111
Q ss_pred ecCC-C-----CCCCCcccccceEEEeCCc---Ccchhhh------cC--------CCCCceEEEeccCCChHHHHHHHH
Q 016730 143 YDSQ-V-----PIGATPEYMAGFYMLQSAS---SFLPVMA------LA--------PQEKERVIDMAAAPGGKTTYIAAL 199 (384)
Q Consensus 143 ~~~~-~-----~~~~~~~~~~G~~~~Qd~s---s~l~~~~------L~--------~~~g~~VLD~cagpGgkt~~la~~ 199 (384)
.++. . ...++..|-.|...+..++ |.-...+ +. +.+|.+|||+||+|||.|-.+++.
T Consensus 153 ~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 153 IAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred EeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc
Confidence 1111 0 0123344555544443332 2211111 11 368999999999999999988876
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 200 MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 200 ~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+..|+|+|..+ +...+ +.-.+|.....|+..+... .+.+|.|+||.-|
T Consensus 233 ---G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmve 280 (357)
T PRK11760 233 ---GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRPP--RKNVDWLVCDMVE 280 (357)
T ss_pred ---CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCCC--CCCCCEEEEeccc
Confidence 35999999543 22222 2335688888887765432 3789999999864
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=67.50 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=63.4
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC-CCEEEEc
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLD 256 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~-fD~VllD 256 (384)
+.+|+|+|||+|-=+.-+|-..+ ...|+-+|...+|+.-++.-.+.+|++|+.++++.+.++.... . ||.|.+=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~---~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEK---KQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccccc---ccCcEEEee
Confidence 67999999999999988884444 4679999999999999999999999999999999888875432 3 9999863
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=70.03 Aligned_cols=92 Identities=22% Similarity=0.296 Sum_probs=77.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---C
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G 246 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~ 246 (384)
++.+|.++|+...+|+.-|-||.|-.+++..+..|+++|+|.|+..++.+++.+..++ .++.+++....++.... .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 4667889999999999999999999999999888899999999999999999999887 57888887766654322 2
Q ss_pred CCCCCEEEEcCCCCCC
Q 016730 247 LNTVDRVLLDAPCSGT 262 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~ 262 (384)
..++|-||+|---|+.
T Consensus 94 i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 94 IGKVDGILLDLGVSSP 109 (314)
T ss_pred CCceeEEEEeccCCcc
Confidence 3589999999776654
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=61.25 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=84.8
Q ss_pred EEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
|.|+||-=|....+|.+.-. ..+++|+|+++.=++.+++++++.|+.+ +.+..+|+...-.. ++..|.|++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~--~e~~d~ivI----A 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP--GEDVDTIVI----A 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G--GG---EEEE----E
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC--CCCCCEEEE----e
Confidence 68999999999998887532 2479999999999999999999999765 88999998764322 134788877 3
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
|.| ..+-.+||......+ +....||. .|.-+...+...|..++|.+++-
T Consensus 74 GMG--------------------G~lI~~ILe~~~~~~----~~~~~lIL-----qP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMG--------------------GELIIEILEAGPEKL----SSAKRLIL-----QPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE---------------------HHHHHHHHHHTGGGG----TT--EEEE-----EESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCC--------------------HHHHHHHHHhhHHHh----ccCCeEEE-----eCCCChHHHHHHHHHCCCEEEEe
Confidence 444 234567888887765 66667776 34467888998899999888763
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=60.51 Aligned_cols=107 Identities=19% Similarity=0.302 Sum_probs=69.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCC-CchhhccCCHHHHHH
Q 016730 205 LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK-DESVKTSKSLEDIQK 282 (384)
Q Consensus 205 ~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r-~p~~~~~~~~~~i~~ 282 (384)
+|+|+||.+..++..+++++..|+.+ +.+++..-..+....+.+++|.|+.+ .|.+.. |..+ ..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN-----LGYLPggDk~i---------~T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN-----LGYLPGGDKSI---------TT 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE-----ESB-CTS-TTS---------B-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE-----CCcCCCCCCCC---------Cc
Confidence 59999999999999999999999865 88887766666665543489999885 566654 2221 12
Q ss_pred HHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc---cccHHHHHHHHh
Q 016730 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---TENEAVIDYALK 329 (384)
Q Consensus 283 l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~---~ENe~vv~~~l~ 329 (384)
....=..-|+.|+++| +|||.++...-.=|+ +|-++|.+|+-.
T Consensus 67 ~~~TTl~Al~~al~lL----~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 67 KPETTLKALEAALELL----KPGGIITIVVYPGHPGGKEESEAVEEFLAS 112 (140)
T ss_dssp -HHHHHHHHHHHHHHE----EEEEEEEEEE--STCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhh----ccCCEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 2222345678888886 999999887766676 566666666543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00019 Score=69.15 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=58.7
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|+|++||.||.+..+.+. +-..|+|+|+++..++..+.|.... +.+.|..++........+|.|+.+|||.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999988766554 2347899999999999998886421 4467777664321025799999999997
Q ss_pred CCCcCCC
Q 016730 261 GTGVISK 267 (384)
Q Consensus 261 g~G~~~r 267 (384)
+.-...+
T Consensus 74 ~fS~ag~ 80 (275)
T cd00315 74 PFSIAGK 80 (275)
T ss_pred hhhHHhh
Confidence 7765554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0003 Score=69.30 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=85.6
Q ss_pred eCCcCcchhhhcCCCC---CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 163 QSASSFLPVMALAPQE---KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~---g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
|.-..-+.+.++..-. ..+|+|.-||+|--++-++--.+.. +|+++|+|++..+.+++|++.+...+..+++.|+.
T Consensus 34 m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN 112 (380)
T COG1867 34 MEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDAN 112 (380)
T ss_pred hhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHH
Confidence 3344444444443333 6789999999999999888776553 89999999999999999999996666777778887
Q ss_pred CcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 240 ~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+-... ...||+|=+||= |. + .-.++.|++.+ +.||.|..+
T Consensus 113 ~lm~~~-~~~fd~IDiDPF----GS------------P----------aPFlDaA~~s~----~~~G~l~vT 153 (380)
T COG1867 113 ALLHEL-HRAFDVIDIDPF----GS------------P----------APFLDAALRSV----RRGGLLCVT 153 (380)
T ss_pred HHHHhc-CCCccEEecCCC----CC------------C----------chHHHHHHHHh----hcCCEEEEE
Confidence 653221 168999999972 21 1 12688899886 888888654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00035 Score=66.72 Aligned_cols=86 Identities=22% Similarity=0.102 Sum_probs=68.1
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~ 247 (384)
-.+..+++.+++.|||+|+|+|..|..|++.. ..|+++|+|+..++.+++... .-.++.++++|+..+.... -.
T Consensus 21 ~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 21 KIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhhc
Confidence 35666788899999999999999999998875 589999999999999988765 4568999999999875431 01
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
.....|+.+.|.
T Consensus 96 ~~~~~vv~NlPy 107 (262)
T PF00398_consen 96 NQPLLVVGNLPY 107 (262)
T ss_dssp SSEEEEEEEETG
T ss_pred CCceEEEEEecc
Confidence 345688888884
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=8.7e-05 Score=69.04 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=52.1
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc--cccCCCCCCEEEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVDRVLL 255 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~--~~~~~~~fD~Vll 255 (384)
+||++|||-|....-|.+--++ .-.|+|+|.++..++.++++....- +++.....|.+... .....+.+|.|.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999988877776544 2489999999999999999876543 34444455655421 1223366776644
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00065 Score=63.18 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=73.9
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH------------cCCceEEEEecCCCCc
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------------MGVTNTIVCNYDGNEL 241 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r------------~g~~~v~~~~~D~~~~ 241 (384)
+..+++.+||+.+||.|.-..+||+. +-.|+|+|+|+..++.+.+.... ....++.+.++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34577889999999999998888885 35899999999999887432111 1123578899999987
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+... .++||.|. | |+..-.+ +|+.+ .+-..+..++| +|||++++.|-..
T Consensus 110 ~~~~-~g~fD~iy-D--r~~l~Al--pp~~R---------------~~Ya~~l~~ll----~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 110 PPED-VGKFDLIY-D--RTFLCAL--PPEMR---------------ERYAQQLASLL----KPGGRGLLITLEY 158 (218)
T ss_dssp GGSC-HHSEEEEE-E--CSSTTTS---GGGH---------------HHHHHHHHHCE----EEEEEEEEEEEES
T ss_pred Chhh-cCCceEEE-E--ecccccC--CHHHH---------------HHHHHHHHHHh----CCCCcEEEEEEEc
Confidence 6432 25799996 3 3223222 23322 22344555664 9999976665443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00045 Score=66.62 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=87.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCccccc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~ 245 (384)
++....+.| .+||=+|-|.|+.+-.++.... -.+++.+|++++-++.+++-+.... -..+.++..|+.++-...
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 344445566 5999999999998888777654 3689999999999999998886654 245788889998876544
Q ss_pred CCCCCCEEEEcCC-CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 246 GLNTVDRVLLDAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 246 ~~~~fD~VllDaP-CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
. .+||+|++|.- +.|-| .-+ ...+.++.+.+.| +++|.+|.-+=|.+-.
T Consensus 147 ~-~~fDvIi~D~tdp~gp~--------~~L-----------ft~eFy~~~~~~L----~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 147 E-EKFDVIIVDSTDPVGPA--------EAL-----------FTEEFYEGCRRAL----KEDGIFVAQAGSPFLQ 196 (282)
T ss_pred C-CcCCEEEEcCCCCCCcc--------ccc-----------CCHHHHHHHHHhc----CCCcEEEEecCCcccc
Confidence 3 48999999953 11111 011 2345667777775 9999999875554433
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=73.73 Aligned_cols=108 Identities=22% Similarity=0.316 Sum_probs=84.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccc--cCCCCCCE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKV--LGLNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~--~~~~~fD~ 252 (384)
-.++-+|||+-+|+|--++..|..+++-+.|+|+|.++..++..++|.+.+++.+ ++....|+..+--. .....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3467799999999999999999999888899999999999999999999998876 55666777654211 11268999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|=+||= |. + -.+|+.|++.+ +.||.| +.|||
T Consensus 187 IDLDPy----Gs------------~----------s~FLDsAvqav----~~gGLL-~vT~T 217 (525)
T KOG1253|consen 187 IDLDPY----GS------------P----------SPFLDSAVQAV----RDGGLL-CVTCT 217 (525)
T ss_pred EecCCC----CC------------c----------cHHHHHHHHHh----hcCCEE-EEEec
Confidence 999973 21 0 13789999997 787765 67776
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00049 Score=58.83 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=50.1
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
.|||+||+.|..+..++...+ .++|+++|.++..++.+++|++.+++.++.+.+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999888754 3689999999999999999999999888877765544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00071 Score=64.11 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
+...+.++++.||++|-|||..|..|.+.. .+|+|+|+|+.++..+.++.+-.-.. ...++.+|....+. ..
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P~ 123 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----PR 123 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----cc
Confidence 344467899999999999999999888874 57999999999999998877543332 37788899877542 57
Q ss_pred CCEEEEcCCC--CCCCcCC--CCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 250 VDRVLLDAPC--SGTGVIS--KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 250 fD~VllDaPC--Sg~G~~~--r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
||.++.+.|. |+-++.- .++.+-|. ...-+|++. |.+++ ..-|...|+--|++
T Consensus 124 fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLv----a~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 124 FDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLV----ARPGDSLYCRLSIN 180 (315)
T ss_pred cceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhc----cCCCCchhceeehh
Confidence 9999999997 4444321 11211111 112345544 44554 44467778777764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.01 Score=52.81 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=92.7
Q ss_pred eccCCChHHHHHHHHccCCceEEEE--eCCHHHHHH---HHHHHHHcCCce-EEEEecCCCCccccc--CCCCCCEEEEc
Q 016730 185 MAAAPGGKTTYIAALMKNTGLIYAN--EMKASRLKS---LTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVLLD 256 (384)
Q Consensus 185 ~cagpGgkt~~la~~~~~~g~V~a~--D~~~~rl~~---l~~n~~r~g~~~-v~~~~~D~~~~~~~~--~~~~fD~VllD 256 (384)
+|=|--+++..|+...+....|+|. |....-.+. +..|++.+.-.+ .+....|++.+...+ ....||+|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 3445556677777776533455554 443332222 335665552222 234467999887665 56789999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
=|+.|.|. ......+.....+-..++.+|..+| +++|.+..+-|.-.|- +.-.|..+.++.++.++
T Consensus 83 FPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L----~~~G~IhVTl~~~~py-~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 83 FPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLL----KPDGEIHVTLKDGQPY-DSWNIEELAAEAGLVLV 148 (166)
T ss_pred CCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCCC-ccccHHHHHHhcCCEEE
Confidence 99998543 1234455556666677888888885 9999999999988775 55667777788888886
Q ss_pred ec
Q 016730 337 PC 338 (384)
Q Consensus 337 ~~ 338 (384)
..
T Consensus 149 ~~ 150 (166)
T PF10354_consen 149 RK 150 (166)
T ss_pred EE
Confidence 54
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0017 Score=59.55 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=85.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE-EEecCCCCccccc------CCCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNELPKVL------GLNTV 250 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~-~~~~D~~~~~~~~------~~~~f 250 (384)
.+.+||+++||+|-.+.|+|+.++. -.-.-.|.+...+..+...+...|+.|+. -+..|+...+-.+ ....|
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 3446999999999999999999986 56677899999999999999999988752 3445666542212 13589
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEeccCC----ccccHHHHH
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSIM----VTENEAVID 325 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCSi~----~~ENe~vv~ 325 (384)
|.|++= ..-.|..-... ..++..|.++| ++||.|+ |---... ++-|+ .-+
T Consensus 104 D~i~~~-------------------N~lHI~p~~~~-~~lf~~a~~~L----~~gG~L~~YGPF~~~G~~ts~SN~-~FD 158 (204)
T PF06080_consen 104 DAIFCI-------------------NMLHISPWSAV-EGLFAGAARLL----KPGGLLFLYGPFNRDGKFTSESNA-AFD 158 (204)
T ss_pred ceeeeh-------------------hHHHhcCHHHH-HHHHHHHHHhC----CCCCEEEEeCCcccCCEeCCcHHH-HHH
Confidence 999861 11111111122 45778888875 9999886 6554442 33343 344
Q ss_pred HHHhcC
Q 016730 326 YALKKR 331 (384)
Q Consensus 326 ~~l~~~ 331 (384)
.-|+..
T Consensus 159 ~sLr~r 164 (204)
T PF06080_consen 159 ASLRSR 164 (204)
T ss_pred HHHhcC
Confidence 455543
|
The function of this family is unknown. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00052 Score=64.22 Aligned_cols=86 Identities=20% Similarity=0.119 Sum_probs=58.5
Q ss_pred cchhhhcCCCCCc--eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----C-----ceEEEEec
Q 016730 168 FLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----V-----TNTIVCNY 236 (384)
Q Consensus 168 ~l~~~~L~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~-----~~v~~~~~ 236 (384)
...+.++++++|. +|||+.||-|.-++.+|.+ + ++|+++|.|+--...++.-+++.. . .++.++++
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4566777777775 8999999999999998875 2 689999999998888887776652 1 36889999
Q ss_pred CCCCcccccCCCCCCEEEEcC
Q 016730 237 DGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDa 257 (384)
|+..+-. .....||+|.+||
T Consensus 140 d~~~~L~-~~~~s~DVVY~DP 159 (234)
T PF04445_consen 140 DALEYLR-QPDNSFDVVYFDP 159 (234)
T ss_dssp -CCCHCC-CHSS--SEEEE--
T ss_pred CHHHHHh-hcCCCCCEEEECC
Confidence 9998754 3347899999998
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00075 Score=59.55 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=57.3
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH
Q 016730 207 YANEMKASRLKSLTANLHRMG---VTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283 (384)
Q Consensus 207 ~a~D~~~~rl~~l~~n~~r~g---~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l 283 (384)
+|+|+|+.+++.++++....+ ..++.++.+|+.+++. ..+.||.|++. .+. + +..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~fD~v~~~-----~~l-~------~~~-------- 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF--DDCEFDAVTMG-----YGL-R------NVV-------- 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC--CCCCeeEEEec-----chh-h------cCC--------
Confidence 479999999999987765322 3568999999998863 34789999862 221 1 110
Q ss_pred HHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 284 ~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
...+.|+++.+.| ||||+++....+-
T Consensus 59 --d~~~~l~ei~rvL----kpGG~l~i~d~~~ 84 (160)
T PLN02232 59 --DRLRAMKEMYRVL----KPGSRVSILDFNK 84 (160)
T ss_pred --CHHHHHHHHHHHc----CcCeEEEEEECCC
Confidence 1245678888875 9999999876653
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00037 Score=63.01 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=56.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.|.+|||+|||+|--+...+. .+...|++.|+++-....++-|.+.+|+ ++.++..|... . ...||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~----~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S----PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C----CcceeEEEe
Confidence 589999999999986654333 3456899999999999999999999996 57777777665 2 268999997
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0022 Score=59.07 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=52.2
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH-------HcCC--ceEEEEecCCCCcc
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH-------RMGV--TNTIVCNYDGNELP 242 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~-------r~g~--~~v~~~~~D~~~~~ 242 (384)
..+++.+++..+|+|||.|...++.|... +-.+.+++|+.+...+.++.+.+ .+|. ..+.+..+|..+.+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 44578899999999999998777666544 44569999999998877665443 3454 35777888887643
Q ss_pred c---ccCCCCCCEEEEcCCC
Q 016730 243 K---VLGLNTVDRVLLDAPC 259 (384)
Q Consensus 243 ~---~~~~~~fD~VllDaPC 259 (384)
. ++ ...|+|+++-=|
T Consensus 115 ~~~~~~--s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 115 FVKDIW--SDADVVFVNNTC 132 (205)
T ss_dssp HHHHHG--HC-SEEEE--TT
T ss_pred hHhhhh--cCCCEEEEeccc
Confidence 1 22 457999997654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.003 Score=62.05 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=81.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccC---CceEEEEeCCHHHHHHHHHHHHHcCCceEEE--EecCCCCcccccC----C
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIV--CNYDGNELPKVLG----L 247 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~--~~~D~~~~~~~~~----~ 247 (384)
.++..++|+|||.|.||..|++.+.. ...-+++|+|.+.|+.+.+++..-....+.+ +++|..+...+.. .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 46778999999999999998887753 2468999999999999999998334444444 6777755422221 1
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHH-chhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~-~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
.....|+. |=|..|-+ .+.+ ...+|....+ .| +|||.|+... .-.-+.++|..
T Consensus 155 ~~~r~~~f--lGSsiGNf----------~~~e-------a~~fL~~~~~~~l----~~~d~lLiG~---D~~k~~~~l~~ 208 (319)
T TIGR03439 155 SRPTTILW--LGSSIGNF----------SRPE-------AAAFLAGFLATAL----SPSDSFLIGL---DGCKDPDKVLR 208 (319)
T ss_pred CCccEEEE--eCccccCC----------CHHH-------HHHHHHHHHHhhC----CCCCEEEEec---CCCCCHHHHHH
Confidence 23455554 33444432 2222 2346666666 54 9999998854 44455666655
Q ss_pred HHh
Q 016730 327 ALK 329 (384)
Q Consensus 327 ~l~ 329 (384)
+..
T Consensus 209 AY~ 211 (319)
T TIGR03439 209 AYN 211 (319)
T ss_pred Hhc
Confidence 443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=62.13 Aligned_cols=120 Identities=26% Similarity=0.298 Sum_probs=79.3
Q ss_pred cccceEEEeCCcCc-chhhhcCCCCCceEEEeccCCChHHHH-HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 155 YMAGFYMLQSASSF-LPVMALAPQEKERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 155 ~~~G~~~~Qd~ss~-l~~~~L~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
|.+|.+ +|..|-. -+....+.++|.+||=+||||=|..+. .|+.+ +..+|+..|+++.|++.+++ +|.+.+.
T Consensus 146 ~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~ 219 (354)
T KOG0024|consen 146 FEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATVTD 219 (354)
T ss_pred hhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeEEe
Confidence 345533 4444322 244555788999999999999666554 45555 45899999999999999876 7887655
Q ss_pred EEecCCCCc-------ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 233 VCNYDGNEL-------PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 233 ~~~~D~~~~-------~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
...... .. ........||..+- |||..+ -++.|+..+ ++|
T Consensus 220 ~~~~~~-~~~~~~~~v~~~~g~~~~d~~~d---CsG~~~-------------------------~~~aai~a~----r~g 266 (354)
T KOG0024|consen 220 PSSHKS-SPQELAELVEKALGKKQPDVTFD---CSGAEV-------------------------TIRAAIKAT----RSG 266 (354)
T ss_pred eccccc-cHHHHHHHHHhhccccCCCeEEE---ccCchH-------------------------HHHHHHHHh----ccC
Confidence 433322 11 11122245898875 888753 245566665 999
Q ss_pred cEEEEEec
Q 016730 306 GYIVYSTC 313 (384)
Q Consensus 306 G~lvYsTC 313 (384)
|+++..-|
T Consensus 267 Gt~vlvg~ 274 (354)
T KOG0024|consen 267 GTVVLVGM 274 (354)
T ss_pred CEEEEecc
Confidence 99888765
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.002 Score=55.21 Aligned_cols=69 Identities=3% Similarity=-0.069 Sum_probs=50.3
Q ss_pred CCCCceEEEeccCCCh-HHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGg-kt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..++.+|||+|+|.|. .+..|++. +..|+|+|+++.+++.++++ + +.++..|..+....+ .+.+|.|.
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~-y~~a~liy 82 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI-YKNAKLIY 82 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH-HhcCCEEE
Confidence 3456889999999996 55555543 35899999999988777654 3 456678888764332 26899997
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
.
T Consensus 83 s 83 (134)
T PRK04148 83 S 83 (134)
T ss_pred E
Confidence 5
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=68.33 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=94.7
Q ss_pred cceEEEeCCcCcchhhhcCCC--CCceEEEeccCCChHHHHHHHHcc---CCceEEEEeCCHHHHHHHHHHHHHcCCc--
Q 016730 157 AGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMGVT-- 229 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~--~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~D~~~~rl~~l~~n~~r~g~~-- 229 (384)
.|.++.-..-..+.+.++.+. |+..|.|+|||+|+.-......+. ....+++.+.........+.|+.-.|+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 344444333334445566654 678999999999997654333322 1246899999999999999888766653
Q ss_pred eEEEEecCCCCcccccCCCCCCEEEEcCCCCCC---CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 230 ~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~---G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
......+|....+......+||.|+.|||.+.. |.........+.+....+..+.......+.++...| ++||
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L----~~gG 349 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVL----GQEG 349 (501)
T ss_pred ccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhc----CCCC
Confidence 223334454433322233579999999998764 211110010011100001122334566777788775 9999
Q ss_pred EEEEE-eccCCccccHH-HHH-HHHhcC
Q 016730 307 YIVYS-TCSIMVTENEA-VID-YALKKR 331 (384)
Q Consensus 307 ~lvYs-TCSi~~~ENe~-vv~-~~l~~~ 331 (384)
+.... .=.+...-+++ ++. .++...
T Consensus 350 ~~aiI~~~gvl~~~~~e~~ir~~lL~~~ 377 (501)
T TIGR00497 350 TAAIVCFPGILYREGKEQTIRKYLVDQN 377 (501)
T ss_pred eEEEEecCCcccCCCchHHHHHHHHHcC
Confidence 75432 22333333433 343 566554
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0023 Score=59.72 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=47.1
Q ss_pred CCCCc-eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCCCEE
Q 016730 176 PQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 176 ~~~g~-~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
..++. .++|+|||+|--+..+++..+ .|+|.|+|+.+|+.+++.-.--- .....+...+...+.. ..+++|.|
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--~e~SVDlI 104 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--GEESVDLI 104 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--CCcceeee
Confidence 34455 799999999955556777754 59999999999998775432110 0112232333333321 13789999
Q ss_pred EE
Q 016730 254 LL 255 (384)
Q Consensus 254 ll 255 (384)
++
T Consensus 105 ~~ 106 (261)
T KOG3010|consen 105 TA 106 (261)
T ss_pred hh
Confidence 86
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0054 Score=59.40 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=69.1
Q ss_pred ceEEEeccCCChH----HHHHHHHccC---CceEEEEeCCHHHHHHHHHHH--------------HHc---------C--
Q 016730 180 ERVIDMAAAPGGK----TTYIAALMKN---TGLIYANEMKASRLKSLTANL--------------HRM---------G-- 227 (384)
Q Consensus 180 ~~VLD~cagpGgk----t~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~--------------~r~---------g-- 227 (384)
-+||.+||++|-= ++.+.+..+. .-+|+|.|+|+..++.+++.. +++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 6899999999964 3333343322 347999999999999987652 110 1
Q ss_pred -C-----ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhcc
Q 016730 228 -V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (384)
Q Consensus 228 -~-----~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~ 301 (384)
+ ..|.+...|....+. ...+.||+|+| |+ +....+ ...|.+++....+.|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~-~~~~~fD~I~c-----------RN--vliyF~-------~~~~~~vl~~l~~~L--- 252 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQW-AVPGPFDAIFC-----------RN--VMIYFD-------KTTQERILRRFVPLL--- 252 (287)
T ss_pred EEChHHHccCEEEcccCCCCCC-ccCCCcceeeH-----------hh--HHhcCC-------HHHHHHHHHHHHHHh---
Confidence 1 135666666655321 11368999997 11 111111 235788899999886
Q ss_pred CCCCcEEEEEe
Q 016730 302 SKSGGYIVYST 312 (384)
Q Consensus 302 lkpGG~lvYsT 312 (384)
+|||+|+...
T Consensus 253 -~pgG~L~lG~ 262 (287)
T PRK10611 253 -KPDGLLFAGH 262 (287)
T ss_pred -CCCcEEEEeC
Confidence 9999998765
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0083 Score=58.49 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.|..|||+|||+|-.+...++. +..+|+|+|.|. +.+-++..++.+.+. .+.++.+...++.. .++.|+|+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---PEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIEL---PEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccC---chhccEEEec
Confidence 4778999999999988876665 346999999764 667777777766654 47787777766542 2789999987
Q ss_pred C
Q 016730 257 A 257 (384)
Q Consensus 257 a 257 (384)
|
T Consensus 251 P 251 (517)
T KOG1500|consen 251 P 251 (517)
T ss_pred c
Confidence 6
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0035 Score=58.48 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHH-HHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS-LTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~-l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
+|..|||+||.+||+|-.+++. +..+|+|+|+....+.- ++ ....-+..-..+++.+....-.+..|.|++|
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR-----~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~D 151 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR-----NDPRVIVLERTNVRYLTPEDFTEKPDLIVID 151 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh-----cCCcEEEEecCChhhCCHHHcccCCCeEEEE
Confidence 6899999999999999988886 35699999997644321 21 1222234444566655322212478999999
Q ss_pred CC
Q 016730 257 AP 258 (384)
Q Consensus 257 aP 258 (384)
..
T Consensus 152 vS 153 (245)
T COG1189 152 VS 153 (245)
T ss_pred ee
Confidence 76
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0055 Score=59.38 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=76.9
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-ccCCCCCCEEEEcCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAPC 259 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~fD~VllDaPC 259 (384)
+|+|+|||.||.+.-+-+.- --.|.|+|+++...+..+.|.. .....|.+.+.. .++. .+|+++.-|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEeccCC
Confidence 79999999999887766542 2379999999999999999875 555688877642 2221 59999999999
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH---hcCCCEE
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL---KKRDVKL 335 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l---~~~~~~l 335 (384)
.+.-...++.... .+.. .| -.++++-+ +.+ +|--.|+=-.-.+....+...++.++ ++.|..+
T Consensus 72 Q~fS~ag~~~~~~---d~r~--~L---~~~~~~~v-~~~----~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v 137 (335)
T PF00145_consen 72 QGFSIAGKRKGFD---DPRN--SL---FFEFLRIV-KEL----KPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNV 137 (335)
T ss_dssp TTTSTTSTHHCCC---CHTT--SH---HHHHHHHH-HHH----S-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE
T ss_pred ceEeccccccccc---cccc--hh---hHHHHHHH-hhc----cceEEEecccceeeccccccccccccccccccceee
Confidence 8887776522211 1111 11 12222222 222 88755554445555555545555444 4445443
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0054 Score=58.95 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceEEEeccCCChHHHHH-HHHccCCceEEEEeCCHHHHHHHHHHHH-HcCCc-eEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 180 ERVIDMAAAPGGKTTYI-AALMKNTGLIYANEMKASRLKSLTANLH-RMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~l-a~~~~~~g~V~a~D~~~~rl~~l~~n~~-r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+|+=+||||=-.|..+ ++.......|+++|+|+.+.+.+++.++ .+|+. .+.+..+|+......+ ..||+|++-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEEh
Confidence 49999999998777654 4443334689999999999999998888 56664 4788889988765433 689999985
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+-- |+ +.+ --.++|.+..+.+ +||..++|=
T Consensus 200 alV---g~-----------~~e-------~K~~Il~~l~~~m----~~ga~l~~R 229 (276)
T PF03059_consen 200 ALV---GM-----------DAE-------PKEEILEHLAKHM----APGARLVVR 229 (276)
T ss_dssp TT----S----------------------SHHHHHHHHHHHS-----TTSEEEEE
T ss_pred hhc---cc-----------ccc-------hHHHHHHHHHhhC----CCCcEEEEe
Confidence 431 11 000 1145888888875 999999874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0057 Score=59.36 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=79.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCce-EEEEecC-CCCc-cc-ccCCCCCCEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCNYD-GNEL-PK-VLGLNTVDRV 253 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~-v~~~~~D-~~~~-~~-~~~~~~fD~V 253 (384)
.-++||+|+|.-..--.|+....+ -.++|.|+|+..++.+++|++++ ++++ |.+.... ...+ .. ....+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 458999999999876666666543 69999999999999999999999 8864 6555432 2121 11 1123689999
Q ss_pred EEcCCCCCCC------cCCCC------------chhhccCCH-HHHHH--HHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 254 LLDAPCSGTG------VISKD------------ESVKTSKSL-EDIQK--CSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 254 llDaPCSg~G------~~~r~------------p~~~~~~~~-~~i~~--l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+|+||--.+- .-++. |.....-+. +-+.. =...-.+++.....+ + ..+..-|
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-----~--~~v~WfT 254 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQL-----K--DQVRWFT 254 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHH-----G--GGEEEEE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHh-----C--CCcEEEe
Confidence 9999974432 11111 111110000 11111 112334567776665 2 3445556
Q ss_pred ccCCccccHHHHHHHHhcCCC
Q 016730 313 CSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 313 CSi~~~ENe~vv~~~l~~~~~ 333 (384)
|-+...+|-.-+...|++.++
T Consensus 255 smvgKkssL~~l~~~L~~~~~ 275 (299)
T PF05971_consen 255 SMVGKKSSLKPLKKELKKLGA 275 (299)
T ss_dssp EEESSGGGHHHHHHHHHHTT-
T ss_pred ecccCcccHHHHHHHHHhcCC
Confidence 788999999999988887653
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=56.08 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=69.4
Q ss_pred ceEEEeccCCCh----HHHHHHHHccC----CceEEEEeCCHHHHHHHHHHHH----H-cCC------------------
Q 016730 180 ERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTANLH----R-MGV------------------ 228 (384)
Q Consensus 180 ~~VLD~cagpGg----kt~~la~~~~~----~g~V~a~D~~~~rl~~l~~n~~----r-~g~------------------ 228 (384)
-+||-++|++|- .++.+.+..+. .-.|+|.|+|...|+.++.-.= . -|+
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~ 177 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR 177 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence 489999999995 45555565543 4689999999999998863210 0 011
Q ss_pred ------ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccC
Q 016730 229 ------TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (384)
Q Consensus 229 ------~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l 302 (384)
+.|.+...|...-.. ..+.||+|+| ||==|.+ + ...|.+++..-...|
T Consensus 178 v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfC-----------RNVLIYF--d-------~~~q~~il~~f~~~L---- 231 (268)
T COG1352 178 VKEELRKMVRFRRHNLLDDSP--FLGKFDLIFC-----------RNVLIYF--D-------EETQERILRRFADSL---- 231 (268)
T ss_pred EChHHhcccEEeecCCCCCcc--ccCCCCEEEE-----------cceEEee--C-------HHHHHHHHHHHHHHh----
Confidence 124444445443221 2367999998 3222222 1 347899999999986
Q ss_pred CCCcEEEEEe
Q 016730 303 KSGGYIVYST 312 (384)
Q Consensus 303 kpGG~lvYsT 312 (384)
+|||.|+.-.
T Consensus 232 ~~gG~LflG~ 241 (268)
T COG1352 232 KPGGLLFLGH 241 (268)
T ss_pred CCCCEEEEcc
Confidence 9999998643
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0042 Score=60.28 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=81.6
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC--c----eEEEEecCCCC
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--T----NTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~--~----~v~~~~~D~~~ 240 (384)
|+|.-... ++++.|+|+|||-||-.+-.-.. +-+.++++||..--++.++.+-+.+.- . .+.++.+|...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 34444443 57889999999999965533322 236899999998888888766654421 1 25677777764
Q ss_pred c--ccc--cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 241 L--PKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 241 ~--~~~--~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
- ... .++.+||+|-|-=.| .+.+..+. .-+.+|.++...| ||||+++=++
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~------------HYaFetee------~ar~~l~Nva~~L----kpGG~FIgTi---- 237 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAF------------HYAFETEE------SARIALRNVAKCL----KPGGVFIGTI---- 237 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeE------------eeeeccHH------HHHHHHHHHHhhc----CCCcEEEEec----
Confidence 2 111 123458988652211 22232221 2245788888886 9999998654
Q ss_pred ccccHHHHHHHHhcC
Q 016730 317 VTENEAVIDYALKKR 331 (384)
Q Consensus 317 ~~ENe~vv~~~l~~~ 331 (384)
-|-++|-+-|+..
T Consensus 238 --Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 238 --PDSDVIIKRLRAG 250 (389)
T ss_pred --CcHHHHHHHHHhc
Confidence 5666766655543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0092 Score=54.84 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++-.|-|+|||-+..+ +..++.-.|..+|+-.. |-.++..|....|- +++.+|++++
T Consensus 72 ~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL--~~~svDv~Vf-- 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPL--EDESVDVAVF-- 128 (219)
T ss_dssp TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S----TT-EEEEEE--
T ss_pred CCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCcC--CCCceeEEEE--
Confidence 4578999999998744 45555457999997652 22355688888774 4589999998
Q ss_pred CC-CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEe
Q 016730 258 PC-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 258 PC-Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
| |-.|+ --...|.+|++.| ||||.|..+--. ..-+|...-...++..||++.
T Consensus 129 -cLSLMGT---------------------n~~~fi~EA~RvL----K~~G~L~IAEV~-SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 129 -CLSLMGT---------------------NWPDFIREANRVL----KPGGILKIAEVK-SRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp -ES---SS----------------------HHHHHHHHHHHE----EEEEEEEEEEEG-GG-S-HHHHHHHHHCTTEEEE
T ss_pred -EhhhhCC---------------------CcHHHHHHHHhee----ccCcEEEEEEec-ccCcCHHHHHHHHHHCCCeEE
Confidence 5 33443 1245789999996 999999766422 223455544456778898887
Q ss_pred ec
Q 016730 337 PC 338 (384)
Q Consensus 337 ~~ 338 (384)
..
T Consensus 182 ~~ 183 (219)
T PF05148_consen 182 SK 183 (219)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0074 Score=55.23 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCceEEEeccCCChHH----HHHHHHccC----CceEEEEeCCHHHHHHHHHH--------------HHHc-----C---
Q 016730 178 EKERVIDMAAAPGGKT----TYIAALMKN----TGLIYANEMKASRLKSLTAN--------------LHRM-----G--- 227 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt----~~la~~~~~----~g~V~a~D~~~~rl~~l~~n--------------~~r~-----g--- 227 (384)
+.-+||.+||++|-=+ +.+.+..+. .-+|+|.|+|+..++.+++- ++++ |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 3468999999999643 333342221 24899999999999988642 1221 1
Q ss_pred -C-----ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhcc
Q 016730 228 -V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (384)
Q Consensus 228 -~-----~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~ 301 (384)
+ +.|.+...|..+.+. ..+.||+|+| |+= ....+ ...|.++++...+.|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~--~~~~fD~I~C-----------RNV--lIYF~-------~~~~~~vl~~l~~~L--- 165 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP--PFGRFDLIFC-----------RNV--LIYFD-------PETQQRVLRRLHRSL--- 165 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE------------SS--GGGS--------HHHHHHHHHHHGGGE---
T ss_pred eEChHHcCceEEEecccCCCCc--ccCCccEEEe-----------cCE--EEEeC-------HHHHHHHHHHHHHHc---
Confidence 1 247777788777222 2378999998 332 12222 245788999988886
Q ss_pred CCCCcEEEEEec
Q 016730 302 SKSGGYIVYSTC 313 (384)
Q Consensus 302 lkpGG~lvYsTC 313 (384)
+|||+|+....
T Consensus 166 -~pgG~L~lG~s 176 (196)
T PF01739_consen 166 -KPGGYLFLGHS 176 (196)
T ss_dssp -EEEEEEEE-TT
T ss_pred -CCCCEEEEecC
Confidence 99999998654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0049 Score=56.17 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=82.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-------CceEEEEecCCCCc-ccccCCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------VTNTIVCNYDGNEL-PKVLGLNTV 250 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-------~~~v~~~~~D~~~~-~~~~~~~~f 250 (384)
.-.+.|+|||-||....++.+.+. ..|++.||..+-.+-+++++..++ ..|+.+....+..+ |..+..+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346899999999999999999875 789999998887777777777765 66777777776654 444433334
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc-HHHHHHHHh
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN-EAVIDYALK 329 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN-e~vv~~~l~ 329 (384)
+.++.= -++|..+-.+.+..+ .+..++..-.-+ |++||.+.++|= .+|- +..+..+.+
T Consensus 140 skmff~---------fpdpHfk~~khk~ri-----i~~~l~~eyay~----l~~gg~~ytitD---v~elh~wm~~~~e~ 198 (249)
T KOG3115|consen 140 SKMFFL---------FPDPHFKARKHKWRI-----ITSTLLSEYAYV----LREGGILYTITD---VKELHEWMVKHLEE 198 (249)
T ss_pred ccceee---------cCChhHhhhhcccee-----echhHHHHHHhh----hhcCceEEEEee---HHHHHHHHHHHHHh
Confidence 444331 234444333322222 223344444444 499999988772 2333 333444444
Q ss_pred cCCCEE
Q 016730 330 KRDVKL 335 (384)
Q Consensus 330 ~~~~~l 335 (384)
++-++.
T Consensus 199 hplfe~ 204 (249)
T KOG3115|consen 199 HPLFER 204 (249)
T ss_pred CcHhhh
Confidence 443443
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.034 Score=51.28 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHc------------------------------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRM------------------------------ 226 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~------------------------------ 226 (384)
..-+++|-|||.|..-+.+.-+-++. ..|+|-|+|++.++.++.|+..+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34579999999999887776654332 37999999999999888887521
Q ss_pred ------------CCceEEEEecCCCCccc---ccCCCCCCEEEEcCCCCCCCcCCCCchhhccC-CHHHHHHHHHHHHHH
Q 016730 227 ------------GVTNTIVCNYDGNELPK---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSK-SLEDIQKCSYLQKQL 290 (384)
Q Consensus 227 ------------g~~~v~~~~~D~~~~~~---~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~-~~~~i~~l~~~Q~~i 290 (384)
|.....+...|.++... ...+...|.|+.|.|+...- .|.- ...+ --.++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t--------~W~g~~~~~------p~~~m 196 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT--------SWQGEGSGG------PVAQM 196 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS--------STTS---HH------HHHHH
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc--------cccCCCCCC------cHHHH
Confidence 12234566778776421 11234579999999973331 2332 1111 22456
Q ss_pred HHHHHHchhccCCCCcEEEEE
Q 016730 291 ILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 291 L~~a~~~L~~~lkpGG~lvYs 311 (384)
|+..... |.++++++.|
T Consensus 197 l~~l~~v----Lp~~sVV~v~ 213 (246)
T PF11599_consen 197 LNSLAPV----LPERSVVAVS 213 (246)
T ss_dssp HHHHHCC----S-TT-EEEEE
T ss_pred HHHHHhh----CCCCcEEEEe
Confidence 7777766 4655566553
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0051 Score=56.81 Aligned_cols=135 Identities=15% Similarity=0.061 Sum_probs=78.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
...+.||+|||-|..|-+++... -.+|..+|..++-++.+++.+..-+..-..+.+.-..++... ..+||+|.+-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW~Q- 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIWIQ- 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEEE-
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEEeh-
Confidence 45789999999999998764433 348999999999999999765442222344555544444221 2689999861
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE-eccCCcc-----c------cHHHHH
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS-TCSIMVT-----E------NEAVID 325 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs-TCSi~~~-----E------Ne~vv~ 325 (384)
......+.+++ .++|.++...| +|||.||.= .||-... | ..+...
T Consensus 130 ------------W~lghLTD~dl-------v~fL~RCk~~L----~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 130 ------------WCLGHLTDEDL-------VAFLKRCKQAL----KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp ------------S-GGGS-HHHH-------HHHHHHHHHHE----EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred ------------HhhccCCHHHH-------HHHHHHHHHhC----cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 11113455554 45678888876 999998853 1221111 1 234556
Q ss_pred HHHhcCCCEEeecCC
Q 016730 326 YALKKRDVKLVPCGL 340 (384)
Q Consensus 326 ~~l~~~~~~l~~~~~ 340 (384)
.+.++.+++++....
T Consensus 187 ~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 187 ELFKQAGLRLVKEEK 201 (218)
T ss_dssp HHHHHCT-EEEEEEE
T ss_pred HHHHHcCCEEEEecc
Confidence 666777888876543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.009 Score=51.48 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHcc---CCceEEEEeCCHHHHHHHHHHHHHcC--C-ceEEEEecC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYD 237 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~D~~~~rl~~l~~n~~r~g--~-~~v~~~~~D 237 (384)
.+...|+|+|||-|..+..++.+++ ....|+++|.++...+.+....++++ . .+..+...+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccc
Confidence 5678999999999999999998542 34689999999999999999999888 4 334444443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.047 Score=52.19 Aligned_cols=108 Identities=10% Similarity=-0.007 Sum_probs=69.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--Cc--eEEEEecCCCCccccc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--VT--NTIVCNYDGNELPKVL 245 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--~~--~v~~~~~D~~~~~~~~ 245 (384)
+++..-+. -.+||=+|.|-||..-.++.. ..+|+-+|+|+..++..++-+-.+. .+ ++.++.. +.. .
T Consensus 65 ppl~~h~~-pk~VLIiGGGDGg~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~-~ 135 (262)
T PRK00536 65 MGGCTKKE-LKEVLIVDGFDLELAHQLFKY---DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLD-L 135 (262)
T ss_pred HHHhhCCC-CCeEEEEcCCchHHHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhh-c
Confidence 33433344 479999999999987776665 2489999999999999998554432 22 3555431 111 1
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
..++||+|++|.. .+ .+..+.+.+. |+|||.+|.=+-|...
T Consensus 136 ~~~~fDVIIvDs~----------------~~-----------~~fy~~~~~~----L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 136 DIKKYDLIICLQE----------------PD-----------IHKIDGLKRM----LKEDGVFISVAKHPLL 176 (262)
T ss_pred cCCcCCEEEEcCC----------------CC-----------hHHHHHHHHh----cCCCcEEEECCCCccc
Confidence 1268999999942 01 1233444555 4999999985555543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.12 Score=41.96 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=67.0
Q ss_pred EEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC--cccccCC-CCCCEEEEcCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE--LPKVLGL-NTVDRVLLDAP 258 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~--~~~~~~~-~~fD~VllDaP 258 (384)
|+|++||+|..+ .++........++++|.++..+...+......+...+.+...|... ++ +.. ..||.+.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--FEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--CCCCCceeEEeeeee
Confidence 999999999877 5555543323789999999998885555443222114566666554 22 222 36888833222
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
+ .+. . ....+..+.+.+ +|+|.++++........
T Consensus 129 ~------------~~~-~----------~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~ 162 (257)
T COG0500 129 L------------HLL-P----------PAKALRELLRVL----KPGGRLVLSDLLRDGLL 162 (257)
T ss_pred h------------hcC-C----------HHHHHHHHHHhc----CCCcEEEEEeccCCCCc
Confidence 1 000 0 234566666665 99999999888765543
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.13 Score=47.64 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=94.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.|.++.|+||--|....++.+.-. ...++|.|+++.-++.+.+|+++.++. .+.+..+|+.... ..+..+|.|..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l--~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL--ELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc--CccCCcCEEEE
Confidence 4577799999999999988777543 368999999999999999999999985 4778888885432 22347998876
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEE
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l 335 (384)
.|.| ..+-++||+...+.+ +.--++| +.|.-|+..+...|..+++++
T Consensus 92 ----AGMG--------------------G~lI~~ILee~~~~l----~~~~rlI-----LQPn~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 92 ----AGMG--------------------GTLIREILEEGKEKL----KGVERLI-----LQPNIHTYELREWLSANSYEI 138 (226)
T ss_pred ----eCCc--------------------HHHHHHHHHHhhhhh----cCcceEE-----ECCCCCHHHHHHHHHhCCcee
Confidence 2444 234467888888876 4334666 377788999998888888776
Q ss_pred ee
Q 016730 336 VP 337 (384)
Q Consensus 336 ~~ 337 (384)
..
T Consensus 139 ~~ 140 (226)
T COG2384 139 KA 140 (226)
T ss_pred ee
Confidence 54
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.052 Score=51.69 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=78.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------------------- 228 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------------------------- 228 (384)
..|+++||+||||--.- +....+--..|+..|..+.-.+.+++-++.-|.
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35889999999994321 222222234799999998877766554432121
Q ss_pred ceE-EEEecCCCCcccccC----CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC
Q 016730 229 TNT-IVCNYDGNELPKVLG----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (384)
Q Consensus 229 ~~v-~~~~~D~~~~~~~~~----~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk 303 (384)
..| .++..|.+..+.... ..+||.|+.= .-.+.+..-....++.+++..++| |
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~------------------fcLE~a~~d~~~y~~al~ni~~lL----k 190 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS------------------FCLESACKDLDEYRRALRNISSLL----K 190 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE------------------SSHHHH-SSHHHHHHHHHHHHTTE----E
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhh------------------HHHHHHcCCHHHHHHHHHHHHHHc----C
Confidence 012 356678776544322 1358988751 122222222234566778888876 9
Q ss_pred CCcEEEEEecc------CC------ccccHHHHHHHHhcCCCEEeec
Q 016730 304 SGGYIVYSTCS------IM------VTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 304 pGG~lvYsTCS------i~------~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
|||.|+....- +- .-=|++.|...+++.|+.++..
T Consensus 191 pGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 191 PGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred CCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 99999986321 11 1247889999999988887765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.029 Score=54.03 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=38.1
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~ 226 (384)
.+|||+|||||.-+..+.+..+....++++|.|+.+++..+..++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 48999999999866666666665568999999999999888766544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.057 Score=49.84 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=74.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+|.+||.+|-|.|-..+.+.+.-+ ..=+-+|.++.-+++++.+.-+- -.||.+..+-=.+....+.++.||-|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEee
Confidence 5688999999999998887766533 23455799999999888764321 24677665432222222345779999998
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
.= ...-+++ +.+-+++.++| ||+|.+-| |-.+..-|.
T Consensus 177 Ty---------------~e~yEdl-------~~~hqh~~rLL----kP~gv~Sy--fNg~~~~~~ 213 (271)
T KOG1709|consen 177 TY---------------SELYEDL-------RHFHQHVVRLL----KPEGVFSY--FNGLGADNL 213 (271)
T ss_pred ch---------------hhHHHHH-------HHHHHHHhhhc----CCCceEEE--ecCcccchh
Confidence 52 1122333 33445788875 99998777 556655554
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0037 Score=57.49 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=65.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-----
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----- 244 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~----- 244 (384)
+...|.|.+|...+||.-|.||.|..|.+.-+. .+++|.|.+|-.-+.+......+=-..+..+.+.+..++..
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~se-~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHSE-LKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCcH-hhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 456788999999999999999999999998654 68999999998877776665322111111111222222111
Q ss_pred cCCCCCCEEEEcCCCCCCCc
Q 016730 245 LGLNTVDRVLLDAPCSGTGV 264 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~ 264 (384)
..+..||-||+|--||+.-+
T Consensus 114 l~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred CCcCCcceEEeecCcccccc
Confidence 12368999999999998754
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.043 Score=46.53 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=52.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.|.+|+|+||+-|..+++.+-. ++..|+|++.+++..+..++|++.+.+-.-.+... ..+.. .+.||...+|.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~~~--Y~~~Di~~iDC 100 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWNGE--YEDVDIFVMDC 100 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---ccccc--CCCcceEEEEc
Confidence 4789999999999988776543 55799999999999999999998764411111111 22222 27899999983
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.058 Score=51.49 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=71.1
Q ss_pred cccccceEEEeCCcCcchhhh-cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 153 PEYMAGFYMLQSASSFLPVMA-LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 153 ~~~~~G~~~~Qd~ss~l~~~~-L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
..|.+|+...--.-|..+.+. -+--.|..|+=+| ---.|...+++.+-..+|..+|+++.-++-..+-++.+|++|+
T Consensus 126 ~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~i 203 (354)
T COG1568 126 HQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNI 203 (354)
T ss_pred hhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccch
Confidence 356666655544333322211 1223577788777 3334443444443345789999999999999999999999999
Q ss_pred EEEecCCCCc-ccccCCCCCCEEEEcCCC
Q 016730 232 IVCNYDGNEL-PKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 232 ~~~~~D~~~~-~~~~~~~~fD~VllDaPC 259 (384)
..+..|.+++ |..+ .++||+++.|||-
T Consensus 204 e~~~~Dlr~plpe~~-~~kFDvfiTDPpe 231 (354)
T COG1568 204 EAFVFDLRNPLPEDL-KRKFDVFITDPPE 231 (354)
T ss_pred hheeehhcccChHHH-HhhCCeeecCchh
Confidence 9999999986 3333 3799999999994
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.084 Score=52.20 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=49.7
Q ss_pred CCCCCceEEEeccC-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cag-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+.+||++|+=.|+| -|..+..+|..+. .+|+|+|+++++++.++ ++|.+.+.... |........ +.||.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~~i~~~-~~~~~~~~~--~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADHVINSS-DSDALEAVK--EIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcEEEEcC-CchhhHHhH--hhCcEE
Confidence 57899999988887 2234445555554 69999999999987765 57776544433 443333322 349999
Q ss_pred EEcCC
Q 016730 254 LLDAP 258 (384)
Q Consensus 254 llDaP 258 (384)
+.-+|
T Consensus 234 i~tv~ 238 (339)
T COG1064 234 IDTVG 238 (339)
T ss_pred EECCC
Confidence 87544
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.068 Score=52.62 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=75.4
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
...+|+|+|.|..+-++....+ .|-+++.+..-+-....++. -|+ ..+-+|...- . .+-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~gV---~~v~gdmfq~---~--P~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PGV---EHVAGDMFQD---T--PKGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CCc---ceeccccccc---C--CCcCeEEE----
Confidence 7899999999999999988665 38888888888888877776 664 4445666542 1 34578886
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
..+...|+.++. .+||+++++.| +|||.++..-+-+.
T Consensus 243 ---------kWiLhdwtDedc-------vkiLknC~~sL----~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 243 ---------KWILHDWTDEDC-------VKILKNCKKSL----PPGGKIIVVENVTP 279 (342)
T ss_pred ---------EeecccCChHHH-------HHHHHHHHHhC----CCCCEEEEEeccCC
Confidence 223336777776 57899999996 99999999887443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.017 Score=53.15 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=52.3
Q ss_pred ceEEEeCCcCcchhhhc--CCCCCceEEEeccCCChHHHHHHHHc---cCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 158 GFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L--~~~~g~~VLD~cagpGgkt~~la~~~---~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
|.-.+|.+.-+++-..| ..+| +.|+++|.+-||-....|.++ ++.++|+++|++.+...+..-..+-+. ..|+
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~-~rI~ 88 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMS-PRIT 88 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcccc-CceE
Confidence 55566666555443332 3343 589999999999888777644 456899999997554433322222232 5688
Q ss_pred EEecCCCCccccc------CCCCCCEEEEcCC
Q 016730 233 VCNYDGNELPKVL------GLNTVDRVLLDAP 258 (384)
Q Consensus 233 ~~~~D~~~~~~~~------~~~~fD~VllDaP 258 (384)
++.+|..+..... .......|++|+-
T Consensus 89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 89 FIQGDSIDPEIVDQVRELASPPHPVLVILDSS 120 (206)
T ss_dssp EEES-SSSTHHHHTSGSS----SSEEEEESS-
T ss_pred EEECCCCCHHHHHHHHHhhccCCceEEEECCC
Confidence 9999988753221 1234568888874
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.28 Score=44.72 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=37.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCH
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~ 213 (384)
..+..+++|++|+|+--|.|.+|..++..++.+|.|+++=-.+
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 3445688999999999999999999999999999999875543
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.026 Score=55.43 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=56.5
Q ss_pred EEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg 261 (384)
|+|++||.||.+.-+-+. +--.+.|+|+++..++..+.|... .+...|..++.... ...+|+++.-+||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~-~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSD-IPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhh-CCCcCEEEecCCCcc
Confidence 689999999998776553 223578899999999999888531 33356776653211 146899999999988
Q ss_pred CCcCCCC
Q 016730 262 TGVISKD 268 (384)
Q Consensus 262 ~G~~~r~ 268 (384)
.-...+.
T Consensus 72 fS~ag~~ 78 (315)
T TIGR00675 72 FSIAGKR 78 (315)
T ss_pred cchhccc
Confidence 7665543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.008 Score=57.78 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.|+.|+||.||-|.+|+-..-.. +...|+|+|.++..++.+++|++.+++.. ..++.+|-+.... ....|+|.+-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc---cccchheeec
Confidence 47999999999999998332222 34689999999999999999999987753 4455677776532 2678999873
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.13 Score=50.96 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=83.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH--HHcCC-----ceEEEEecCCCCcccccCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL--HRMGV-----TNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~--~r~g~-----~~v~~~~~D~~~~~~~~~~~~ 249 (384)
+.-++||=+|.|-|--.-.+... ++-++|+-+|.||++++..+++. ...+- ..+.+++.|+..+-..- ...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-ccc
Confidence 34578999999999654444432 44579999999999999998543 33322 35888899998764322 368
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc-CCccccHHHHHHHH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS-IMVTENEAVIDYAL 328 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS-i~~~ENe~vv~~~l 328 (384)
||.|++|-|=-. +|.+-...+ .++...+.+. |+++|.+|.-.-| ++.-+-=--|..-+
T Consensus 366 fD~vIVDl~DP~------tps~~rlYS-----------~eFY~ll~~~----l~e~Gl~VvQags~y~tp~vfw~i~aTi 424 (508)
T COG4262 366 FDVVIVDLPDPS------TPSIGRLYS-----------VEFYRLLSRH----LAETGLMVVQAGSPYFTPRVFWRIDATI 424 (508)
T ss_pred ccEEEEeCCCCC------Ccchhhhhh-----------HHHHHHHHHh----cCcCceEEEecCCCccCCceeeeehhHH
Confidence 999999988211 122211111 1233333344 4999998854333 33333223334445
Q ss_pred hcCCCEEee
Q 016730 329 KKRDVKLVP 337 (384)
Q Consensus 329 ~~~~~~l~~ 337 (384)
++.++...|
T Consensus 425 k~AG~~~~P 433 (508)
T COG4262 425 KSAGYRVWP 433 (508)
T ss_pred HhCcceeee
Confidence 666766655
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.037 Score=54.61 Aligned_cols=82 Identities=24% Similarity=0.308 Sum_probs=59.0
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~VllDaP 258 (384)
.+++|+|||-||...-+.+.- --.+.|+|+++..++..+.|... ..+...|...+... .....+|+|+--||
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence 479999999999886655542 24789999999999999988753 33445565544221 11117999999999
Q ss_pred CCCCCcCCCC
Q 016730 259 CSGTGVISKD 268 (384)
Q Consensus 259 CSg~G~~~r~ 268 (384)
|-+.-+..++
T Consensus 77 CQ~FS~aG~r 86 (328)
T COG0270 77 CQDFSIAGKR 86 (328)
T ss_pred CcchhhcCcc
Confidence 9888776554
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.011 Score=59.30 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=54.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCcc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELP 242 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~ 242 (384)
.++|+.|-|+|||-|-.++-++.. ...|+|+|.+++.++-++.|++...+. ++.+.+.|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999988765553 489999999999999999999887774 5889999998764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.06 Score=52.01 Aligned_cols=46 Identities=15% Similarity=0.025 Sum_probs=37.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
.+|+.|||-++|+|.. +..|..++ -.-+++|++++-++.+++++..
T Consensus 207 ~~GD~VLDPF~GSGTT-~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTT-GAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHH-HHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999999974 34455543 3799999999999999998753
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.097 Score=52.07 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=65.0
Q ss_pred CCCCceEEEeccCCChH-HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC-CC-CcccccCCCCCCE
Q 016730 176 PQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GN-ELPKVLGLNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgk-t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D-~~-~~~~~~~~~~fD~ 252 (384)
.+++.+|+=+||||=|. +..+++.++ ...|+++|.++.|++.+++. .|...+.....+ .. .......+..||.
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~---~g~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEA---GGADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHh---CCCeEeecCccccHHHHHHHHhCCCCCCE
Confidence 34555899999999554 455555554 57999999999999998763 233322221111 10 0111122247999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+- |||+. ..+..+++++ ++||++++..-.
T Consensus 242 vie---~~G~~-------------------------~~~~~ai~~~----r~gG~v~~vGv~ 271 (350)
T COG1063 242 VIE---AVGSP-------------------------PALDQALEAL----RPGGTVVVVGVY 271 (350)
T ss_pred EEE---CCCCH-------------------------HHHHHHHHHh----cCCCEEEEEecc
Confidence 986 76632 1567788886 999999986543
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.13 Score=53.21 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=56.2
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------------- 244 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------------- 244 (384)
.-+++|++||.||.+.-+-+. + --.|.++|+++...+..+.|... .....+.+.|...+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999988776443 2 23689999999999999888521 11223334555544210
Q ss_pred -cCCCCCCEEEEcCCCCCCCcCC
Q 016730 245 -LGLNTVDRVLLDAPCSGTGVIS 266 (384)
Q Consensus 245 -~~~~~fD~VllDaPCSg~G~~~ 266 (384)
.....+|+++.-|||.+.-+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0113689999999997775543
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.08 Score=48.20 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=30.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHH
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTA 221 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~ 221 (384)
-.+|+.|||.+||+|. |++.|..++ -+-+++|+++.-++.+++
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 3579999999999997 444555553 369999999999888763
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.15 Score=55.05 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=80.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-------C----CceEEEEeCCH---HHHHHHHH----------HHH-H-----cC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-------N----TGLIYANEMKA---SRLKSLTA----------NLH-R-----MG 227 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-------~----~g~V~a~D~~~---~rl~~l~~----------n~~-r-----~g 227 (384)
+.-+|+|+|-|.|.-++...+... + .-+++++|..+ +.+..+-. .+. . .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999998877666551 1 23789999765 22222211 111 1 13
Q ss_pred Cc---------eEEEEecCCCCcccccCCCCCCEEEEcC--CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHH
Q 016730 228 VT---------NTIVCNYDGNELPKVLGLNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296 (384)
Q Consensus 228 ~~---------~v~~~~~D~~~~~~~~~~~~fD~VllDa--PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~ 296 (384)
+. +..+..+|++.....+. ..||.|++|+ | .++|++ |+. +++....+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP-------~~np~~---W~~-----------~~~~~l~~ 194 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAP-------AKNPDM---WSP-----------NLFNALAR 194 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCC-------ccChhh---ccH-----------HHHHHHHH
Confidence 31 23455678776433222 4699999995 5 567876 333 45666666
Q ss_pred chhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 297 MVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 297 ~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
++ +|||+++-.|| -..|..-|...||++...
T Consensus 195 ~~----~~~~~~~t~t~-------a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 195 LA----RPGATLATFTS-------AGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred Hh----CCCCEEEEeeh-------HHHHHHHHHHcCCeeeec
Confidence 64 99999984443 356777788888877653
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.083 Score=51.00 Aligned_cols=75 Identities=15% Similarity=0.013 Sum_probs=44.9
Q ss_pred ceEEEEecCCCCcccccCCCCCCEEEEcCCCCC-CCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 229 ~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg-~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
.+..++++|+......+.+++||.|++|||.-. .+.....+ . +.. .+....-.+++..+.++| ||||.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~--~--~~~---~~~~~~l~~~l~~~~rvL----K~~G~ 75 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIE--A--WKE---DLFIDWLYEWIDECHRVL----KKQGT 75 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccc--c--ccH---HHHHHHHHHHHHHHHHHh----CCCcE
Confidence 345677899887654455678999999999832 11111111 1 111 122233456777777765 99999
Q ss_pred EEEEeccC
Q 016730 308 IVYSTCSI 315 (384)
Q Consensus 308 lvYsTCSi 315 (384)
++.. |+.
T Consensus 76 i~i~-~~~ 82 (284)
T PRK11524 76 MYIM-NST 82 (284)
T ss_pred EEEE-cCc
Confidence 9764 443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.086 Score=54.28 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=56.4
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEE---eCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYAN---EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~---D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+||+|||.|+++.+|.++ + ..++++ |..+...+.+- + -|+.....+.+ ...+| +....||.|=
T Consensus 120 ~~LDvGcG~aSF~a~l~~r--~-V~t~s~a~~d~~~~qvqfal---e-RGvpa~~~~~~-s~rLP--fp~~~fDmvH--- 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER--N-VTTMSFAPNDEHEAQVQFAL---E-RGVPAMIGVLG-SQRLP--FPSNAFDMVH--- 186 (506)
T ss_pred EEEeccceeehhHHHHhhC--C-ceEEEcccccCCchhhhhhh---h-cCcchhhhhhc-ccccc--CCccchhhhh---
Confidence 5999999999999888775 2 222222 33333333332 2 25543322111 23344 2347899885
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
||...+ .| ...+- -+|-..-++ |+|||++|+|.--+.
T Consensus 187 -csrc~i-------~W--~~~~g--------~~l~evdRv----LRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 -CSRCLI-------PW--HPNDG--------FLLFEVDRV----LRPGGYFVLSGPPVY 223 (506)
T ss_pred -cccccc-------cc--hhccc--------ceeehhhhh----hccCceEEecCCccc
Confidence 454443 12 22211 134444444 599999999988777
|
; GO: 0008168 methyltransferase activity |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.93 Score=44.49 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=57.9
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~~fD 251 (384)
...+|++||=.|| |+.+....++.... ..|+++|.+++|++.++ ++|.+.+. ..+-.++.... ..+.||
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~vi--~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADKLV--NPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcEEe--cCCcccHHHHhccCCCCC
Confidence 3457999997765 55555444433322 36999999999987764 47875432 21111111111 113589
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.|+ | |+|.. ..+..+++++ ++||+++....
T Consensus 238 ~vi-d--~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSF-E--VSGHP-------------------------SSINTCLEVT----RAKGVMVQVGM 267 (343)
T ss_pred EEE-E--CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEcc
Confidence 886 4 44431 1345667775 99999987654
|
|
| >KOG4174 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=6.9 Score=37.17 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=92.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHH------HHHHHHH---HHHcCCceEEEEecCCCCccc--cc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASR------LKSLTAN---LHRMGVTNTIVCNYDGNELPK--VL 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~r------l~~l~~n---~~r~g~~~v~~~~~D~~~~~~--~~ 245 (384)
...+||-+|=|-=..+..|+...+ ..+.|+|...+.+- ...++.| ++++|+. ++...|++.+.. .+
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl~~~~~~ 133 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSLKFHADL 133 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeEEecccc
Confidence 456788888888888888888766 45666666555433 2223344 5677765 233345554432 34
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC-CCcEEEEEeccCCccccHHHH
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK-SGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk-pGG~lvYsTCSi~~~ENe~vv 324 (384)
..++||.|+.+=|-+|.|.-.+ -+ ..-+.....+-+.+|..|-.+| + ..|.|..+--+..| =|.-.+
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~~e-~d------~~~i~~~qkL~rgFle~akemL----~~edGeI~itlk~t~P-~~~W~i 201 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIKFE-QD------RNIIPLHQKLFRGFLESAKEML----KDEDGEIHITLKTTYP-FNPWNI 201 (282)
T ss_pred cccccceEEEcCCCCCCCcccc-cc------hHHHHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeccCCC-Cchhhh
Confidence 4589999999999999997521 11 1222245667778888888886 6 66877665333333 244677
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
+.+.+..+..+..
T Consensus 202 k~Lak~~gl~L~~ 214 (282)
T KOG4174|consen 202 KFLAKEFGLTLLE 214 (282)
T ss_pred hHhhhhccccchh
Confidence 7777777877654
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.45 Score=42.19 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=66.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc---ccccCCCCCCEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL---PKVLGLNTVDRV 253 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~---~~~~~~~~fD~V 253 (384)
.++.+|+=+||=+-... +.........++-.|.|.+ .+.+|-+ .++..|.... +..+ .++||+|
T Consensus 24 ~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~R--------F~~~~~~--~F~fyD~~~p~~~~~~l-~~~~d~v 90 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRR--------FEQFGGD--EFVFYDYNEPEELPEEL-KGKFDVV 90 (162)
T ss_pred CCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecch--------HHhcCCc--ceEECCCCChhhhhhhc-CCCceEE
Confidence 35678887776554433 3332233457888998863 2333433 4556777654 3333 3689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
++|||- .+.+ .+.+ ...+++.| +|+++.++.+ ++++||+.+...+
T Consensus 91 v~DPPF---------------l~~e-------c~~k-~a~ti~~L---~k~~~kii~~----Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 91 VIDPPF---------------LSEE-------CLTK-TAETIRLL---LKPGGKIILC----TGEEMEELIKKLL 135 (162)
T ss_pred EECCCC---------------CCHH-------HHHH-HHHHHHHH---hCccceEEEe----cHHHHHHHHHHHh
Confidence 999993 1211 1222 23445555 5899999975 4688999998887
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.33 Score=45.40 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=51.2
Q ss_pred EEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 232 ~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+.++|+.+....++++++|.|+.|||+- .|.-.+... .. ... .......+.+.++.++| ||||.++ +
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~~-~~--~~~---~~~ew~~~~l~E~~RVL----Kpgg~l~-i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYL-VGFRDRQGR-TI--AGD---KTDEWLQPACNEMYRVL----KKDALMV-S 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcc-cccccCCCc-cc--ccc---cHHHHHHHHHHHHHHHc----CCCCEEE-E
Confidence 46678887765556678999999999984 222111100 00 001 11223345677777775 9988764 4
Q ss_pred eccCCccccHHHHHHHHhcCCCEEee
Q 016730 312 TCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 312 TCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
.|+... ...+..++++.++.+..
T Consensus 71 f~~~~~---~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 71 FYGWNR---VDRFMAAWKNAGFSVVG 93 (227)
T ss_pred Eecccc---HHHHHHHHHHCCCEEee
Confidence 566532 23333445666776654
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.3 Score=46.39 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=68.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
...|-|+|||-+-.+ +. ....|.++|+.+ -|-.++..|.++.|. .+++.|++++
T Consensus 181 ~~vIaD~GCGEakiA----~~--~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl--~d~svDvaV~--- 234 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIA----SS--ERHKVHSFDLVA---------------VNERVIACDMRNVPL--EDESVDVAVF--- 234 (325)
T ss_pred ceEEEecccchhhhh----hc--cccceeeeeeec---------------CCCceeeccccCCcC--ccCcccEEEe---
Confidence 457899999998643 22 234799999653 234556788888773 4589999987
Q ss_pred C-CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 259 C-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 259 C-Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
| |-.|+ .-..++..|.+.| |+||.+..+.-+--- +.-......+...||.+..
T Consensus 235 CLSLMgt---------------------n~~df~kEa~RiL----k~gG~l~IAEv~SRf-~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 235 CLSLMGT---------------------NLADFIKEANRIL----KPGGLLYIAEVKSRF-SDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred eHhhhcc---------------------cHHHHHHHHHHHh----ccCceEEEEehhhhc-ccHHHHHHHHHHcCCeeee
Confidence 5 33343 1245788888886 999998766433211 2212233445566777665
Q ss_pred c
Q 016730 338 C 338 (384)
Q Consensus 338 ~ 338 (384)
.
T Consensus 289 ~ 289 (325)
T KOG3045|consen 289 K 289 (325)
T ss_pred h
Confidence 4
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.71 Score=42.68 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=55.4
Q ss_pred CceEEEeccCCCh--HHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCC-CcccccCCCCCCEE
Q 016730 179 KERVIDMAAAPGG--KTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGN-ELPKVLGLNTVDRV 253 (384)
Q Consensus 179 g~~VLD~cagpGg--kt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~-~~~~~~~~~~fD~V 253 (384)
-..++++||+-|. .|+.|+..... .|+++++-.++..+...++.+..+|+.+ ++|+.++.. .+...+ ...|.+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF~ 119 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDFV 119 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCEE
Confidence 4568888766443 45555554433 4799999999998889999999999865 587777753 333233 679999
Q ss_pred EEcC
Q 016730 254 LLDA 257 (384)
Q Consensus 254 llDa 257 (384)
++|.
T Consensus 120 vVDc 123 (218)
T PF07279_consen 120 VVDC 123 (218)
T ss_pred EEeC
Confidence 9995
|
The function of this family is unknown. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.097 Score=43.57 Aligned_cols=87 Identities=23% Similarity=0.387 Sum_probs=58.6
Q ss_pred CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCCCCCEEEEcCCCCCCCc
Q 016730 189 PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNTVDRVLLDAPCSGTGV 264 (384)
Q Consensus 189 pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~~fD~VllDaPCSg~G~ 264 (384)
-|..+..+|..++ .+|+++|.++.|++.++ ++|.+.+ +..+..++. ....+..+|.|+- |+|.+
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~- 69 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADHV--IDYSDDDFVEQIRELTGGRGVDVVID---CVGSG- 69 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESEE--EETTTSSHHHHHHHHTTTSSEEEEEE---SSSSH-
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhccccc--ccccccccccccccccccccceEEEE---ecCcH-
Confidence 4677788888876 79999999999987764 5785533 334333221 2223357999976 55543
Q ss_pred CCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 265 ~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
..+..+++++ ++||+++.....-
T Consensus 70 ------------------------~~~~~~~~~l----~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 ------------------------DTLQEAIKLL----RPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------HHHHHHHHHE----EEEEEEEEESSTS
T ss_pred ------------------------HHHHHHHHHh----ccCCEEEEEEccC
Confidence 2567788886 9999998765443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.7 Score=39.90 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
++.+|| +..|.|+.+.+++..+.. ...|++++.++..+..+...++..+. ++.+...|..+.... + ..+
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777 445678888888876543 34788899998888877776665543 567778888764321 1 114
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
++|.|+..+
T Consensus 84 ~id~vi~~a 92 (250)
T PRK12939 84 GLDGLVNNA 92 (250)
T ss_pred CCCEEEECC
Confidence 689998855
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.037 Score=50.69 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=32.3
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHH
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~ 220 (384)
..++||+|||-|-.|.+++-... +|+|.|.|..+..+++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLK 151 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHh
Confidence 46899999999999998887764 5999999988766654
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.86 Score=44.82 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=56.2
Q ss_pred CCCCCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+++|++||=.|| |+.++. ++..+.+...|+++|.+++|++.+++ ++.. ... + .... ...||
T Consensus 160 ~~~~g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~--~~~--~--~~~~---~~g~d 224 (341)
T cd08237 160 AHKDRNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET--YLI--D--DIPE---DLAVD 224 (341)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce--eeh--h--hhhh---ccCCc
Confidence 3578999998886 454443 34432223579999999999988764 3432 111 1 1111 12589
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|+ | |+|... + ...+..+++++ ++||+++..-.
T Consensus 225 ~vi-D--~~G~~~-----------~-----------~~~~~~~~~~l----~~~G~iv~~G~ 257 (341)
T cd08237 225 HAF-E--CVGGRG-----------S-----------QSAINQIIDYI----RPQGTIGLMGV 257 (341)
T ss_pred EEE-E--CCCCCc-----------c-----------HHHHHHHHHhC----cCCcEEEEEee
Confidence 886 4 444210 0 12456777875 99999986554
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.39 Score=48.12 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=36.8
Q ss_pred hcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH
Q 016730 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n 222 (384)
...+++|++||..++|+ |..+..+++.++. +.|+++|.++++++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 34567899999998766 5566677776642 4699999999998887764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=2 Score=45.04 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=69.0
Q ss_pred HHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc---cCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchh-
Q 016730 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL---DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPV- 171 (384)
Q Consensus 96 ~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~- 171 (384)
+.+....-+.-.++... -.++.+.|.++|+.+ +.++.++.. +..++-..-.-..||-.++..+..+..
T Consensus 81 ~~l~~g~~li~~l~p~~--~~~l~~~l~~~~it~ia~e~vpr~sra------q~~d~lssma~IAGy~Av~~aa~~~~~~ 152 (509)
T PRK09424 81 ALLREGATLVSFIWPAQ--NPELLEKLAARGVTVLAMDAVPRISRA------QSLDALSSMANIAGYRAVIEAAHEFGRF 152 (509)
T ss_pred HhcCCCCEEEEEeCccc--CHHHHHHHHHcCCEEEEeecccccccC------CCcccccchhhhhHHHHHHHHHHHhccc
Confidence 33444444555566532 367899999998864 222112211 111222222223444444433322211
Q ss_pred -----hhcCCCCCceEEEeccCCChHHH-HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 172 -----MALAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 172 -----~~L~~~~g~~VLD~cagpGgkt~-~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
-++...++++|+=+|||+=|... ..|..++ ..|+++|.+++|++.+++ +|.+.+
T Consensus 153 ~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v 212 (509)
T PRK09424 153 FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFL 212 (509)
T ss_pred CCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEE
Confidence 12335689999999999976544 4555554 379999999999887654 687643
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.3 Score=46.41 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=51.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..+|+.-+|+||+|||.|-.+-. ..-.|+|+|.-+ +.+++...| .|.....|+..+... ..+.|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~-----ma~sL~dtg--~v~h~r~DGfk~~P~--r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGP-----MAQSLMDTG--QVTHLREDGFKFRPT--RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhh---cceEEEEeccch-----hhhhhhccc--ceeeeeccCcccccC--CCCCceEEe
Confidence 45899999999999999976554 346899999654 233443333 467778899887542 368999999
Q ss_pred cC
Q 016730 256 DA 257 (384)
Q Consensus 256 Da 257 (384)
|.
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 85
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.43 Score=44.64 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=37.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g 227 (384)
-.+|+.|||.+||+|... ..|..++ -..+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~-~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTC-VAALQSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHH-HHHHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 358999999999999743 3344433 468999999999999988887643
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=3 Score=38.48 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+|| +..|+|+.+.+++..+... ..|+.++.++..++.+...++..+. ++.++..|..+.... . ..+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 4556788899888865433 4899999999988888777766554 466677888764321 0 1146
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899998654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=3.1 Score=38.42 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+|+.+.+++..+... ..|+.++.+++.++.+...+.. .+-..+.++..|..+.... . ..
T Consensus 3 ~~k~vlItG-as~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITG-AGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 355676555 4677888888766433 4899999998888777666643 2334455667788764221 1 11
Q ss_pred CCCCEEEEcC
Q 016730 248 NTVDRVLLDA 257 (384)
Q Consensus 248 ~~fD~VllDa 257 (384)
+..|.|+..+
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 4589999876
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.6 Score=42.71 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=55.2
Q ss_pred cCCCCCceEEEeccCCCh-HHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGg-kt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
..+++|++||=.|+|+-| .+..+|..++ ..|++++.++++++.+ +++|.+.+.. . .... .+.+|.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~vi~--~--~~~~----~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAASAGG--A--YDTP----PEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCceecc--c--cccC----cccceE
Confidence 456789999988864333 2233444432 3699999999987654 5588764321 1 1111 145887
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
++. |++.| ..+..+++.+ ++||+++..
T Consensus 227 ~i~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~~ 253 (329)
T TIGR02822 227 AIL---FAPAG-------------------------GLVPPALEAL----DRGGVLAVA 253 (329)
T ss_pred EEE---CCCcH-------------------------HHHHHHHHhh----CCCcEEEEE
Confidence 654 22221 1456677776 999998754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=5.2 Score=37.16 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------c-CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~-~~~ 248 (384)
+|.+||=.| |.|+.+.++++.+-. ...|+.++.+..+++.+...+...+. ++.++..|..+.... . ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777666 677888888876643 34899999999888887777766553 456678888864322 0 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHc-hhccCCCCcEEEEEecc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM-VDANSKSGGYIVYSTCS 314 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~-L~~~lkpGG~lvYsTCS 314 (384)
.+|.|+..+..+..+.....+.-.| ...+.....-...+++.+.+. +. -++.|.+|+.+.+
T Consensus 89 ~id~vi~~ag~~~~~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~l~--~~~~~~~v~~sS~ 150 (259)
T PRK08213 89 HVDILVNNAGATWGAPAEDHPVEAW---DKVMNLNVRGLFLLSQAVAKRSMI--PRGYGRIINVASV 150 (259)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHH---HHHHhHHhHHHHHHHHHHHHHHHH--hcCCeEEEEECCh
Confidence 6899998765433222222221111 111222233344455555443 21 0344677776653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.4 Score=43.37 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=54.1
Q ss_pred CCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeC---CHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEM---KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~---~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
+++|++||=.|+ |+.+. .++..++ ..|++++. +++|++.+ +++|.+.+.....|... ......
T Consensus 170 ~~~g~~vlI~G~--G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~v~~~~~~~~~---~~~~~~ 238 (355)
T cd08230 170 TWNPRRALVLGA--GPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATYVNSSKTPVAE---VKLVGE 238 (355)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEEecCCccchhh---hhhcCC
Confidence 468999998876 45444 4444443 37999987 67777655 45787532111111111 011246
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
||.|+- |+|.. ..+..+++.+ ++||+++..-
T Consensus 239 ~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~G 269 (355)
T cd08230 239 FDLIIE---ATGVP-------------------------PLAFEALPAL----APNGVVILFG 269 (355)
T ss_pred CCEEEE---CcCCH-------------------------HHHHHHHHHc----cCCcEEEEEe
Confidence 898864 44431 1356677775 9999887543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=3 Score=38.45 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=54.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc---------ccc-
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---------KVL- 245 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~---------~~~- 245 (384)
.++.+||=.| |.|+.+.+++..+... ..|++++.+...+..+.+.+...+...+.+...|..... ...
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 4677788666 5677777777655433 489999999988888877777766555666666664211 000
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
..+.+|.|+..+.
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 1147899998764
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.31 Score=45.56 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCce-EEEEe-cCCCCc-cccc-CCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCN-YDGNEL-PKVL-GLNTVD 251 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~-v~~~~-~D~~~~-~~~~-~~~~fD 251 (384)
.++-++||+|.|---.--.+...+-+ -..++.|+|+..+..++.++..+ ++++ +.+.. .|...+ +... ..+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 45678999988765433333333222 37899999999999999999877 6654 43332 232222 2222 247899
Q ss_pred EEEEcCCCCC
Q 016730 252 RVLLDAPCSG 261 (384)
Q Consensus 252 ~VllDaPCSg 261 (384)
.++|+||.-+
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999999533
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.99 Score=42.98 Aligned_cols=100 Identities=20% Similarity=0.134 Sum_probs=56.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcccccCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTV 250 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~f 250 (384)
+...+|++||=.|+ |+.+..++++.+..| .|+++|.+++|++.++ .+|.+.+.-. .+. ...........+
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~-~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELAL----SFGATALAEP-EVLAERQGGLQNGRGV 188 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCcEecCc-hhhHHHHHHHhCCCCC
Confidence 34568999998765 555555444433222 4889999999887664 4676532211 111 001111122468
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|.|+- |+|.. ..+..+++.+ ++||+++...
T Consensus 189 d~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 218 (280)
T TIGR03366 189 DVALE---FSGAT-------------------------AAVRACLESL----DVGGTAVLAG 218 (280)
T ss_pred CEEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEec
Confidence 98863 44331 1356677775 9999988543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.9 Score=38.13 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=50.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.+..||=.| |+|+.+.+++..+.. +..|++++.++.++..+.+.+... ..+.++..|..+.... + ...
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777666 577888888775533 348999999998887776665432 3466677887754211 1 113
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
.+|.|+..+
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689988754
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.6 Score=43.07 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=57.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~~ 248 (384)
.+++|++||=.|+ |+.+..+.++.+..| .|+++|.+++|++.++ ++|.+. +++....+. .....+.
T Consensus 173 ~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~----~~Ga~~--~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGATH--TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCce--EEcCCCcCHHHHHHHHhCCC
Confidence 4678999998764 555554444333223 5999999999988774 467643 222211111 1111224
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.|+ | |+|.. ..+..+++.+ ++||++|..-
T Consensus 245 g~d~vi-d--~~g~~-------------------------~~~~~~~~~~----~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVI-D--AVGRP-------------------------ETYKQAFYAR----DLAGTVVLVG 276 (358)
T ss_pred CCCEEE-E--CCCCH-------------------------HHHHHHHHHh----ccCCEEEEEC
Confidence 689886 4 55431 1345566665 9999998654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=7.8 Score=36.39 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c----CCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----GLNT 249 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~----~~~~ 249 (384)
.|.++|=.|++ ||.+..+++.+- ....|+.++.+..+++.+.+.+....-.++.++..|..+.... . ..+.
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 36677755554 566777776543 3458999999999888887777554223466777888764211 1 1246
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
+|.++.++
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 89888755
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.39 Score=48.12 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=61.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~ 249 (384)
+......++..++|++||-|+-+..++..- ...++++|.++-.+.+........++++ ..++..|....+ +++..
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--fedn~ 178 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--FEDNT 178 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--CCccc
Confidence 333456678899999999999999888774 3579999999999988888777777765 233556666544 34578
Q ss_pred CCEEE-EcCCC
Q 016730 250 VDRVL-LDAPC 259 (384)
Q Consensus 250 fD~Vl-lDaPC 259 (384)
||.|- +|+-|
T Consensus 179 fd~v~~ld~~~ 189 (364)
T KOG1269|consen 179 FDGVRFLEVVC 189 (364)
T ss_pred cCcEEEEeecc
Confidence 99874 45444
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.8 Score=43.22 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..++++.+..| .|+++|.+++|++.++ .+|.+.
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 45678999998864 666665555443333 6999999999988774 478754
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=5.2 Score=37.78 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=54.8
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+|| +..|.|+.+.+++..+.. ...|+.+|.+...++.+.+.+...|. ++.++..|..+.... . ..+.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 55777 555668888888875543 34899999998887777666655443 466778888764221 1 1146
Q ss_pred CCEEEEcCCCCCCC
Q 016730 250 VDRVLLDAPCSGTG 263 (384)
Q Consensus 250 fD~VllDaPCSg~G 263 (384)
+|.|+..+.-+..+
T Consensus 84 id~vi~~Ag~~~~~ 97 (287)
T PRK06194 84 VHLLFNNAGVGAGG 97 (287)
T ss_pred CCEEEECCCCCCCC
Confidence 89999977544433
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.42 Score=42.35 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=45.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc---CCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM---GVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~---g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.|.+||++|+|--+.+..|.+.......|.-.|-++..++.++.-..++ +++.+.+...+-..-.......+||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3678999998865554433333223467888899999888887666554 2333322222211111111235899998
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
+
T Consensus 109 a 109 (201)
T KOG3201|consen 109 A 109 (201)
T ss_pred e
Confidence 7
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=6 Score=36.04 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.|+ +|+.+.++++.+.. ...|++.+.++.++..+...+...+ ++.++..|..+..... ..+
T Consensus 4 ~~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3668887776 47788888876643 3489999999988877765554433 5677778887643110 014
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+..+.
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 5798887653
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=5.6 Score=36.99 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=49.9
Q ss_pred eEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD 251 (384)
+|| +..|+|+.+.+++..+ .....|++++.++...+.+.+.+...+. ++.+...|..+..... .....|
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 456 4456777888877644 3345899999998887777777766553 5667778887753211 113689
Q ss_pred EEEEcC
Q 016730 252 RVLLDA 257 (384)
Q Consensus 252 ~VllDa 257 (384)
.|+..+
T Consensus 81 ~vi~~a 86 (263)
T PRK06181 81 ILVNNA 86 (263)
T ss_pred EEEECC
Confidence 998854
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.94 Score=43.88 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=86.1
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-- 227 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-- 227 (384)
..+++..+|-| |+--+-++.- ....-++||=+|-|-||.--..+.. +.-+.+.-+|++..-++..++-+..+-
T Consensus 97 iqlte~de~~Y--qemi~~l~l~--s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g 171 (337)
T KOG1562|consen 97 IQLTERDEFAY--QEMIAHLALC--SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG 171 (337)
T ss_pred eeCCccccccc--eeeeeccccc--cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc
Confidence 34555655544 5433222211 2233468999999999965433333 233568889999998888877665543
Q ss_pred C--ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 228 V--TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 228 ~--~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
. +.+.+..+|+..+-+....++||+|++|-. +|. ....+..|+.......+.| |+|
T Consensus 172 y~~~~v~l~iGDG~~fl~~~~~~~~dVii~dss---------dpv---------gpa~~lf~~~~~~~v~~aL----k~d 229 (337)
T KOG1562|consen 172 YEGKKVKLLIGDGFLFLEDLKENPFDVIITDSS---------DPV---------GPACALFQKPYFGLVLDAL----KGD 229 (337)
T ss_pred cCCCceEEEeccHHHHHHHhccCCceEEEEecC---------Ccc---------chHHHHHHHHHHHHHHHhh----CCC
Confidence 2 357777889988766555589999999852 221 2234556777777777765 999
Q ss_pred cEEE
Q 016730 306 GYIV 309 (384)
Q Consensus 306 G~lv 309 (384)
|+++
T Consensus 230 gv~~ 233 (337)
T KOG1562|consen 230 GVVC 233 (337)
T ss_pred cEEE
Confidence 9985
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=6.6 Score=41.75 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=55.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC--------ceEEEEecCCCCcccc
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV--------TNTIVCNYDGNELPKV 244 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~--------~~v~~~~~D~~~~~~~ 244 (384)
++.+.|.+||=.| |+|+.+.+++..+- .+..|++++.+..++..+.+.+..+++ .++.++.+|..+....
T Consensus 75 ~~~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 3445677777555 56888888887653 345899999999988877766654322 2477788898875322
Q ss_pred c-CCCCCCEEEEcC
Q 016730 245 L-GLNTVDRVLLDA 257 (384)
Q Consensus 245 ~-~~~~fD~VllDa 257 (384)
. ..+.+|.|++.+
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 1 115689998743
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=4.7 Score=37.38 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.|+ .||.+.+++..+- ....|+.++.+.++++.+.+.++..+ .++.++..|..+.... . ..+
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4677886775 4566777776553 33489999999998888888777666 3466677888764221 0 115
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
++|.++..+.
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7899988764
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=6.3 Score=36.56 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCCE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD~ 252 (384)
.||=.|+ ++|.+..++..+.....|+.++.++++++.+.+.++..|-..+.++..|..+..... ..+..|.
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 3554454 566777777766555689999999999998888887766545667788887742210 1257899
Q ss_pred EEEcC
Q 016730 253 VLLDA 257 (384)
Q Consensus 253 VllDa 257 (384)
++.++
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 98854
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.9 Score=42.31 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=34.6
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+|+ |..+..+|..++ ..|+++|.+++|++.++ .+|.+.
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~ 213 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGADL 213 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCce
Confidence 3567899999888744 333344555543 37999999999987664 467653
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=6.7 Score=36.23 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=53.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.|+.+.+++..+...| .|++++.++++++.+...+...+. ++.++..|..+..... ..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 467777666 67778888887664334 799999999998888777755443 4666777877542110 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 6899998664
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=2.2 Score=41.75 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCCCCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC---cccccCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE---LPKVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~---~~~~~~~~ 248 (384)
..++|++||=.++ |+.+.. +|..++ ...|++++.++++++.+ +.+|.+.+ +..+... +.....+.
T Consensus 157 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~Ga~~~--i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 157 QGCEGKNVIIIGA--GTIGLLAIQCAVALG-AKSVTAIDINSEKLALA----KSLGAMQT--FNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCceE--ecCcccCHHHHHHHhcCC
Confidence 4568899987754 555444 444443 23478999999988765 34676432 2222111 11112234
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.+++| |+|.. ..+..+++++ ++||+++..-
T Consensus 228 ~~d~~v~d--~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 260 (347)
T PRK10309 228 RFDQLILE--TAGVP-------------------------QTVELAIEIA----GPRAQLALVG 260 (347)
T ss_pred CCCeEEEE--CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEc
Confidence 68866777 54431 2456677776 9999988653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=8.8 Score=35.72 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=53.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
+|.+||=.|++.+|.+..++..+. ....|+.+|.+..+++...+.++. +|..++.++..|..+.... . ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 466787777652256666666543 234799999999888887777655 4545677778888764211 0 11
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++..+-
T Consensus 96 g~id~li~~ag 106 (262)
T PRK07831 96 GRLDVLVNNAG 106 (262)
T ss_pred CCCCEEEECCC
Confidence 47899988664
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.47 E-value=6.4 Score=35.96 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
++.+||=.| |.|+.+.+++..+...| .|+.+.. ++.+.+.+.+.+...+. ++.++..|..+.... + ..
T Consensus 4 ~~~~vlItG-~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTG-ASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355666444 46778888887664433 5655544 45556666666666553 467777888764211 1 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+..|.|+..+.-...+.+. ..+.++... ...-...++..+++.+ +++|.+++.+++..
T Consensus 82 ~~id~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~ss~~~ 143 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIA-------DFDLEDFDRTIATNLRGAFVVLREAARHL----GQGGRIINLSTSVI 143 (245)
T ss_pred CCCCEEEECCCCCCCCChh-------hCCHHHHHHHHhhhchHHHHHHHHHHHHh----ccCcEEEEEeeccc
Confidence 4689999866321111111 112222222 1222334555666654 77899999987543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=89.40 E-value=2.2 Score=41.05 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=56.6
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc---cccCCCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLNTV 250 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~---~~~~~~~f 250 (384)
.+++|++||..++|+ |..+..+|...+ ..|++.+.++.+.+.++ .+|++.+.. ....... .......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~----~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAK----ELGADEVLN--SLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCEEEc--CCCcCHHHHHHHhcCCCc
Confidence 367889999864432 344445555543 46999999998877664 367654322 1111110 11223579
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|+- |+|.+ ..+..+++.| ++||+++..
T Consensus 234 D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 262 (338)
T cd08254 234 DVIFD---FVGTQ-------------------------PTFEDAQKAV----KPGGRIVVV 262 (338)
T ss_pred eEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98763 33321 2456677775 999998864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=6 Score=37.02 Aligned_cols=79 Identities=10% Similarity=0.001 Sum_probs=49.7
Q ss_pred CCceEEEeccCCC-hHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..||=.|+++| |.+..++..+- ....|+.++.+.+..+.+.+..+.++ .+.++..|..+.... ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 4778999999884 88887777653 33478888887654444444444433 234566787764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.++-
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 57899998763
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.5 Score=42.75 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ce-EEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GL-IYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTV 250 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~-V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~~f 250 (384)
+.+++|++||=.|+ |+.+..++++.+.. .. |++++.+++|++.++ .+|.+.+.-... +...+.....+..|
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELAK----ALGADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCEEEcCCcchHHHHHHHhCCCCC
Confidence 45678999988754 66555444433221 34 999999999877653 467653321111 10011111222479
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|+- |+|.. ..+..+++.+ +++|+++..
T Consensus 233 d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 261 (339)
T cd08239 233 DVAIE---CSGNT-------------------------AARRLALEAV----RPWGRLVLV 261 (339)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98864 43331 1345667765 999998743
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=7.6 Score=35.86 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+|| +..|+|+.+.+++..+- ....|+.++.++.+.+.+.+.+...|. .+.++..|..+..... ..+
T Consensus 6 ~~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356677 55666788888777554 334899999999888888777766654 4666788887643211 114
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
..|.|+..+-+.
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 589998866543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=12 Score=34.60 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=51.4
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
|.++|=.|+ .|+.+.+++..+.. ...|++++.+..+++.+.+.+...+ ..+.++..|..+..... ..+.
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 346675555 55567777765433 3489999999988888777776554 35677788887642110 1146
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
.|.|+..+..
T Consensus 79 id~lI~~ag~ 88 (252)
T PRK07677 79 IDALINNAAG 88 (252)
T ss_pred ccEEEECCCC
Confidence 8999987643
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=10 Score=34.97 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=53.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.|+ +|+.+..++..+. ....|+.++.+++.++.+.+.++..+. ++.++..|..+.... + ..+
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3567787775 5666777776543 335899999999988888887777663 467778888764211 0 114
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
++|.|+..+
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 689999865
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=8.1 Score=38.00 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=54.8
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.+..||=.| |+||.+..++..+. ....|+.++.++++++.+.+.++..|.+ +.++..|..+..... ..+
T Consensus 6 ~~k~vlITG-As~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITG-ASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE-VLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456677444 56777887777553 3358999999999999998888877754 555567877642110 115
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++.++-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 78999987643
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.28 E-value=9.6 Score=34.87 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=51.6
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.++|=.| |+|+.+..++..+-. ...|++++.++.....+.+.++..+. ++.++..|..+.... . ..+.
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV-KAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 44667666 578888888876543 34899999999888777776665543 466778888865321 1 1145
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
.|.|+..+
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 89888754
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=7.5 Score=36.43 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|..+|=.|+++ +|.+..++..+.. ...|+..+.+....+.+++..+.+.-.++.++..|..+.... . ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467889889884 8888888876543 347777765432223333333333223466667888764211 0 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.++.
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 67898887653
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=88.10 E-value=3.4 Score=39.95 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=33.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.++ .|+.+..+.++.+.. .+|++.+.++++.+.++ .+|.+.
T Consensus 134 ~~~~~g~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~----~lGa~~ 186 (325)
T TIGR02825 134 CGVKGGETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK----KLGFDV 186 (325)
T ss_pred hCCCCCCEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCCE
Confidence 34678999986654 344444443333322 37999999988876664 478754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=13 Score=34.44 Aligned_cols=128 Identities=10% Similarity=-0.018 Sum_probs=71.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|.++|=.|+ .|+.+..++..+. ....|+.++.+.+.++.+..++.... -..+.++..|..+.... ...
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3667776665 5566777776543 33589999999988888877776541 12466677888764211 012
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+++|.|+..+. .+. ..| ....+.++..... .-...+++.++..+. -.++|.+++.++..
T Consensus 87 g~id~li~~ag---~~~--~~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~~ii~~sS~~ 149 (257)
T PRK09242 87 DGLHILVNNAG---GNI--RKA--AIDYTEDEWRGIFETNLFSAFELSRYAHPLLK--QHASSAIVNIGSVS 149 (257)
T ss_pred CCCCEEEECCC---CCC--CCC--hhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHH--hcCCceEEEECccc
Confidence 57899987553 221 111 1122333333222 222334555555431 03468888877643
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=14 Score=34.17 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.|+.+..++..+. ....|+..+.++..++.+.+.++..|. .+.++..|..+.... + ..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467888666 57788888877553 335899999999888887777776654 356667888764211 0 124
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.|+..+..
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68999886643
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=18 Score=33.85 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=71.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
++.+||=.| |.|+.+.+++..+.. ...|++++.++..+..+.+.+...+. .+.++..|..+.... + ...
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888676 567777777765543 34899999998888777666666553 356667888764211 0 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+|.|+..+.. ....+. ...+.++..+ ...-...++..++..+ .+++|.+++.+.
T Consensus 86 ~iD~vi~~ag~-----~~~~~~--~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l---~~~~g~iv~iss 144 (264)
T PRK07576 86 PIDVLVSGAAG-----NFPAPA--AGMSANGFKTVVDIDLLGTFNVLKAAYPLL---RRPGASIIQISA 144 (264)
T ss_pred CCCEEEECCCC-----CCCCcc--ccCCHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCEEEEECC
Confidence 68999986631 111111 1122333222 2222334556666654 246788887654
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=6.6 Score=36.92 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=46.3
Q ss_pred ccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCCCCEEEEc
Q 016730 186 AAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNTVDRVLLD 256 (384)
Q Consensus 186 cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~fD~VllD 256 (384)
..|+|+.+..+++.+. .+..|+.++.+++.++.+.+.+...+...+.+...|..+.... ...+..|.|+..
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 85 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNI 85 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3456777777776543 3357888999988887777777666544445556777653210 012468999886
Q ss_pred CC
Q 016730 257 AP 258 (384)
Q Consensus 257 aP 258 (384)
+.
T Consensus 86 ag 87 (272)
T PRK07832 86 AG 87 (272)
T ss_pred CC
Confidence 53
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=10 Score=37.19 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.+..||=.| |+||.+..++..+. ....|+.++.++.+++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 455666555 56677777776553 335899999999999888888887775 4566678887643211 125
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++.++..
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 78999987643
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=15 Score=34.18 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=52.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|..+|=.|++ ||.+.+++..+. ....|+.++.++.+++.+.+.+.... -.++.++..|..+..... ..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46677766654 556677776553 34589999999998888776665432 235667778887753210 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++..+.
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 56899988664
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=12 Score=35.30 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=51.0
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------cCCCCCCEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------LGLNTVDRV 253 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~~~~~fD~V 253 (384)
.+|=.|| ||.+.+++..+.....|+.+|.+...++.+.+.++..|. .+.++..|..+.... ...+.+|.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4454443 688999998876556899999998888777766665553 456667888764211 012568999
Q ss_pred EEcCC
Q 016730 254 LLDAP 258 (384)
Q Consensus 254 llDaP 258 (384)
+..+.
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 98764
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.72 E-value=8.7 Score=35.87 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHc-cCC-ceEEEEeCCHHH-HHHHHHHHHHcCCceEEEEecCCCCcccc-------cC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALM-KNT-GLIYANEMKASR-LKSLTANLHRMGVTNTIVCNYDGNELPKV-------LG 246 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~-~~~-g~V~a~D~~~~r-l~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~~ 246 (384)
..+.+||=.|| +||.+.+++..+ ... ..|++++.+++. ++.+.+.++..+..++.++..|..+.... ..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 34567776655 678888888764 332 489999988775 77777777776655688888888764321 11
Q ss_pred CCCCCEEEEcC
Q 016730 247 LNTVDRVLLDA 257 (384)
Q Consensus 247 ~~~fD~VllDa 257 (384)
.+..|.++..+
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 24799888743
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.58 E-value=7.9 Score=39.19 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=70.5
Q ss_pred CCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHH---cCC----------ceEEEEecCCCCcccccCCCCCCEE
Q 016730 188 APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR---MGV----------TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 188 gpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r---~g~----------~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
|-|..++-+|...... -.|+++|+++.+++.+..--.. -++ ..... ..|... . ...|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra-Ttd~~~----l--~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA-TTDPEE----L--KECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE-ecChhh----c--ccCCEE
Confidence 6666666666555443 5899999999999887532100 000 00111 011111 1 357877
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc-CC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK-RD 332 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~-~~ 332 (384)
++-.|---.+ .+.||+. .+.+|.+.+...|++|-.+++ -.|..|--.|+++..+++. .|
T Consensus 89 iI~VPTPl~~--~~~pDls-----------------~v~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~~sg 148 (436)
T COG0677 89 IICVPTPLKK--YREPDLS-----------------YVESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEERSG 148 (436)
T ss_pred EEEecCCcCC--CCCCChH-----------------HHHHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhhcCC
Confidence 7766532222 2667654 345555555555798766655 4577899999999999987 44
Q ss_pred CE
Q 016730 333 VK 334 (384)
Q Consensus 333 ~~ 334 (384)
.+
T Consensus 149 L~ 150 (436)
T COG0677 149 LK 150 (436)
T ss_pred Cc
Confidence 43
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=87.52 E-value=13 Score=35.65 Aligned_cols=45 Identities=24% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
....+||=-|||-|..+.-+|.+ +-.+.|+|.|--++-...-.+.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHc
Confidence 34678999999999999988887 3589999999998766554443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=87.50 E-value=4.7 Score=40.73 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=31.2
Q ss_pred CCCCCceEEEeccCCChHHH---HHHHHcc-CCceEEEEeCCHHHHHHHHHH
Q 016730 175 APQEKERVIDMAAAPGGKTT---YIAALMK-NTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~---~la~~~~-~~g~V~a~D~~~~rl~~l~~n 222 (384)
.+++|++||=.++ .|+.+. .++..++ +...|+++|.+++|++.+++.
T Consensus 172 ~~~~g~~VlV~G~-~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGG-AGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeC-CCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678999886653 244444 4444432 123799999999999988764
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=9.7 Score=34.92 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=51.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.+.+||= ..|+|+.+.+++..+. ....|+.++.++.....+...+...+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlI-tGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIV-TGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG-TAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3556774 4477888888887553 334899999988777666666554332 3556678887653210 113
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999987653
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=15 Score=33.59 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=50.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEE-EeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a-~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
+|.+||=.| |.|+.+.+++..+...| .|+. .+.+....+.+.+.++..+. ++.++..|..+.... + ..
T Consensus 3 ~~~~vlItG-a~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTG-SSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355677455 56888888887665444 6655 46677777776666666553 466667888764311 1 11
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+..|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 468999997753
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=87.23 E-value=2.3 Score=40.29 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=49.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+..+|+|+|||-==.++-...... ....+|.|+|...++.+..-+..+|... .+...|...-+. ....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~-~~~v~Dl~~~~~---~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPH-DARVRDLLSDPP---KEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CE-EEEEE-TTTSHT---TSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCc-ceeEeeeeccCC---CCCcchhhH
Confidence 367999999998876654333322 3589999999999999999999999754 333446554321 256899887
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=7.5 Score=36.07 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=48.5
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-------C--CCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------G--LNTV 250 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------~--~~~f 250 (384)
+||=.| |+|+.+..++..+.. ...|++++.++..++.+...+. + .++.++..|..+..... . .+++
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 355444 557778887775543 3489999999888777655443 2 35777788887643210 0 2578
Q ss_pred CEEEEcCCC
Q 016730 251 DRVLLDAPC 259 (384)
Q Consensus 251 D~VllDaPC 259 (384)
|.|+..+..
T Consensus 79 d~vi~~ag~ 87 (260)
T PRK08267 79 DVLFNNAGI 87 (260)
T ss_pred CEEEECCCC
Confidence 999986643
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=18 Score=33.41 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=53.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.++|=.| |+|+.+.+++..+-. ...|+..+.+..++..+.+.+...+. .+..+..|..+.... . ..+
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 355677555 556778877776543 34899999998888888777766553 455667888764211 0 125
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 68999987654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.02 E-value=17 Score=34.03 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=53.4
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCccccc-------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL-------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~-------~~~~ 249 (384)
+.+||=. .|+|+.+.+++..+. ....|++++.+++.++.+.+.+...+. .++.++..|..+..... ..+.
T Consensus 3 ~k~~lIt-Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVT-GASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEE-CCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4456644 466677777776543 334899999998888887776666554 35777788888753210 1146
Q ss_pred CCEEEEcCCCCC
Q 016730 250 VDRVLLDAPCSG 261 (384)
Q Consensus 250 fD~VllDaPCSg 261 (384)
.|.|+..+..+.
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799998765433
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.94 E-value=10 Score=37.18 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=51.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC-CCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG-LNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~-~~~fD~Vll 255 (384)
.+.+||=.| |+|..+.++++.+-..| .|++++.+......+...+.. ..++.++.+|..+...... ...+|.|+-
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 366788555 57999999988664444 788888776554443333321 2357777888876532210 135899988
Q ss_pred cCCCCCC
Q 016730 256 DAPCSGT 262 (384)
Q Consensus 256 DaPCSg~ 262 (384)
-|..++.
T Consensus 86 ~A~~~~~ 92 (353)
T PLN02896 86 VAASMEF 92 (353)
T ss_pred CCccccC
Confidence 7765443
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=20 Score=32.64 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=53.4
Q ss_pred CceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+ .....|++++.++.+++.+...+...+. ++.++..|..+.... + ..+.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45677666 5778888887754 3345899999998888777666665543 567778888765321 1 1146
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
.|.|+..+..
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999987653
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=86.87 E-value=11 Score=34.62 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=51.9
Q ss_pred EEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCCE
Q 016730 182 VIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD~ 252 (384)
+|=.| |.|+.+.+++..+- ....|+.++.+..+++.+.+.+...+. ++.++..|..+..... ..+..|.
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 34334 56777887776553 334899999998888877777766554 4667778887643210 1146899
Q ss_pred EEEcCCCCCCC
Q 016730 253 VLLDAPCSGTG 263 (384)
Q Consensus 253 VllDaPCSg~G 263 (384)
|+..+.....+
T Consensus 81 vi~~ag~~~~~ 91 (254)
T TIGR02415 81 MVNNAGVAPIT 91 (254)
T ss_pred EEECCCcCCCC
Confidence 99977654433
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.68 E-value=16 Score=33.53 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.0
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---C--CCCCCEEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G--LNTVDRVL 254 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~--~~~fD~Vl 254 (384)
+||=.| |+|+.+.+++..+-. ...|++++.++...+.+.+.+...+-.++.++..|..+..... . ...+|.|+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 566444 567788887776543 3489999999988877766665444457788888888753211 0 13579999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
..+.
T Consensus 82 ~~ag 85 (243)
T PRK07102 82 IAVG 85 (243)
T ss_pred ECCc
Confidence 8764
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=17 Score=34.28 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=47.9
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++. +|.+..++..+.. ...|+.++.+....+.+++..+..|. ...+..|..+.... ...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888876 3677777765533 34788788775444444444444453 23557888764221 012
Q ss_pred CCCCEEEEcC
Q 016730 248 NTVDRVLLDA 257 (384)
Q Consensus 248 ~~fD~VllDa 257 (384)
+.+|.++.++
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 5799888766
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=24 Score=32.25 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=53.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCccccc--------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+.+||=.| |+||.+.+++..+.. ...|+..+.++.+++.+...+.... -.++.+...|..+..... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34677555 577888888876533 3489999999999888877665432 235777788888653110 124
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
..|.|+..+-.+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=16 Score=33.73 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----- 245 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~----- 245 (384)
...++.+||=.|+. |+.+.+++..+. ....|++++.+++.++.+.+...+. ++.++..|..+.... .
T Consensus 7 ~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHHH
Confidence 33467889977765 777888777643 3358999999988777665554322 456677888764321 1
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
...++|.|+..+.
T Consensus 83 ~~~~~d~vi~~ag 95 (264)
T PRK12829 83 RFGGLDVLVNNAG 95 (264)
T ss_pred HhCCCCEEEECCC
Confidence 0146899998664
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=86.53 E-value=7 Score=37.47 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=62.6
Q ss_pred ceEEEeccCCC--hHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC----CCCC--
Q 016730 180 ERVIDMAAAPG--GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL----NTVD-- 251 (384)
Q Consensus 180 ~~VLD~cagpG--gkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~----~~fD-- 251 (384)
...||+|||-= +.+-.+|+...+..+|+-+|.++--+...+..+....-....++.+|.++....+.. +.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 46999999943 345568888878899999999999888888777654322378889999987544321 1222
Q ss_pred ---EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 ---RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ---~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|++- |++---| ..++. ..++....+.| .||.+|+.|..+-
T Consensus 150 rPVavll~------~vLh~v~------D~~dp-------~~iv~~l~d~l----apGS~L~ish~t~ 193 (267)
T PF04672_consen 150 RPVAVLLV------AVLHFVP------DDDDP-------AGIVARLRDAL----APGSYLAISHATD 193 (267)
T ss_dssp S--EEEEC------T-GGGS-------CGCTH-------HHHHHHHHCCS-----TT-EEEEEEEB-
T ss_pred CCeeeeee------eeeccCC------CccCH-------HHHHHHHHHhC----CCCceEEEEecCC
Confidence 34431 2322111 11222 34666667775 9999999997765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.49 E-value=3.3 Score=41.40 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=34.1
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..+.++.+.. ..|+++|.++++++.+ +.+|++.
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~~ 241 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVTD 241 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCcE
Confidence 34678999998754 66665554443322 2588999999887766 4478753
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=18 Score=33.31 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=52.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
++.+||=.| |+|+.+.+++..+-. ...|+.++.++..++.+...+...+. ++..+..|..+.... . ..+
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 356777555 566778887775543 34899999999888887777766554 466778888764211 0 114
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
..|.|+..+
T Consensus 82 ~~d~vi~~a 90 (258)
T PRK07890 82 RVDALVNNA 90 (258)
T ss_pred CccEEEECC
Confidence 689999866
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=86.25 E-value=2 Score=38.84 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHH------------HHHHcC-CceEEEEecCCCCcccccCCCCCCEE
Q 016730 188 APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTA------------NLHRMG-VTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 188 gpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~------------n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
|.|..++-+|..+... -.|+++|+++++++.+++ .+++.. -.+..+. .|.... . ...|.+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i--~~adv~ 80 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---I--KDADVV 80 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---H--HH-SEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---h--hccceE
Confidence 6666666555554444 489999999999988763 222221 1233342 222211 1 357888
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
++-.|.=-.+ ...||..+. ...++..... +++ |.+|..-+|+-|--.++++..++++.
T Consensus 81 ~I~VpTP~~~--~~~~Dls~v-------------~~a~~~i~~~----l~~-~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 81 FICVPTPSDE--DGSPDLSYV-------------ESAIESIAPV----LRP-GDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp EE----EBET--TTSBETHHH-------------HHHHHHHHHH----HCS-CEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred EEecCCCccc--cCCccHHHH-------------HHHHHHHHHH----Hhh-cceEEEccEEEEeeehHhhhhhhhhh
Confidence 8866531111 222333211 1223333343 377 56666677888888888998888753
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.3 Score=40.55 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=48.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc-ccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~-~~~~~~~~fD 251 (384)
.++||+.|| +.||-||.++.+.|+.+.. .++++.-.+.++.+.+++| |+.. |.....|..+- .+...+..+|
T Consensus 143 ~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngKGVd 217 (336)
T KOG1197|consen 143 NVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGKGVD 217 (336)
T ss_pred CCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCCCce
Confidence 589999998 7778888888888876533 4778887788888777665 6653 22333333221 2222345677
Q ss_pred EEE
Q 016730 252 RVL 254 (384)
Q Consensus 252 ~Vl 254 (384)
.+.
T Consensus 218 ~vy 220 (336)
T KOG1197|consen 218 AVY 220 (336)
T ss_pred eee
Confidence 764
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.14 E-value=11 Score=41.02 Aligned_cols=122 Identities=19% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+|.+||=.| |.|+.+.+++..+.. ...|+++|.+..+++.+...+... ..+.++..|..+.... . ..+
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567777555 467777777765533 348999999998887776554432 3566777887764221 1 124
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHH----HHHHHHHHHHHHHHHHchhccCCC---CcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKS---GGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i----~~l~~~Q~~iL~~a~~~L~~~lkp---GG~lvYsTC 313 (384)
.+|.|+..+..+..+.+.. .+.++. .....-...+++.+++.+ +. ||.+|+.+.
T Consensus 498 ~iDvvI~~AG~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~l----~~~~~~g~iV~vsS 558 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEE-------TSDEDWRRSFDVNATGHFLVAREAVRIM----KAQGLGGSIVFIAS 558 (681)
T ss_pred CCCEEEECCCCCCCCChhh-------CCHHHHHHHHHHHhHHHHHHHHHHHHHH----HhcCCCcEEEEECC
Confidence 7899998664333332211 122222 122222344566666654 44 678876553
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.5 Score=44.73 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=44.5
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEec
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNY 236 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~ 236 (384)
.|||+|+|+|-.+++.+..+. -.|+|+|+-+.+.+.++.-.++.|.+ ++.+++-
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 599999999998876666543 47999999999999999999999975 4666553
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.97 E-value=19 Score=33.78 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |+||.+..++..+. ....|+.++.+ .+++.+.+.++..+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlItG-as~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITG-ASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 355677444 45666777776543 34589999998 677766666665553 4666678877642110 125
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.++.
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 6899998774
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=85.94 E-value=6.5 Score=38.96 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=37.4
Q ss_pred CceEEEeccCCChHHHHHHHHc--------cCC-------ceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM--------KNT-------GLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDG 238 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~--------~~~-------g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~ 238 (384)
--+|+|+||+.|.-|+.+.+.+ ... -.|+-+|.-..=...+-..+.... ..++-+.-.-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 3579999999999998755432 111 378889985444444433333321 22333322222
Q ss_pred CCcccccCCCCCCEEEE
Q 016730 239 NELPKVLGLNTVDRVLL 255 (384)
Q Consensus 239 ~~~~~~~~~~~fD~Vll 255 (384)
..+...++.++.|.+..
T Consensus 97 SFy~rLfP~~Svh~~~S 113 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHS 113 (334)
T ss_dssp -TTS--S-TT-EEEEEE
T ss_pred hhhhccCCCCceEEEEE
Confidence 33344455577888764
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=85.92 E-value=3.4 Score=41.01 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=57.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~ 247 (384)
..+++|++||=.|+ |+.+..++++.+..| .|+++|.+++|++.++ .+|.+.+ +..+..++. ....
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~--i~~~~~~~~~~i~~~~~- 257 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGATAT--VNAGDPNAVEQVRELTG- 257 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCceE--eCCCchhHHHHHHHHhC-
Confidence 34678999988764 555554444433222 6999999999987764 4677532 222211111 1111
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+.+|.|+- |+|.+ ..+..+++.+ ++||+++...
T Consensus 258 ~g~d~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFE---MAGSV-------------------------PALETAYEIT----RRGGTTVTAG 290 (371)
T ss_pred CCCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEEc
Confidence 36898863 44432 1345667775 9999987543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=85.34 E-value=24 Score=32.15 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=52.4
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+. ....|++++.+..++..+...+...+. ++.+...|..+.... + ..+.
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56788555 46777777776543 335899999998887777776665543 477778888764211 1 1136
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.|+..+..
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8999987643
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.33 E-value=24 Score=32.88 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.+.++|=.|++ |+.+.+++..+ .....|+..+.++.+++.+...+...|. .+.++..|..+.... . ..+
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45667766655 45566666543 3345888889999988888888776654 366677888764221 0 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999987653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=20 Score=34.32 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+|| +..|+||.+.+++..+.. ...|+.++.+..+.+.+.+.+... +-..+.++..|..+..... ..
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777 444567888888875543 348888898888877666655432 2234667788887653210 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.|+..+.
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899998764
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.22 E-value=9.4 Score=35.82 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=46.0
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+|| +..|+|+.+.+++..+.. ...|++++.++++++.+.. . ++.++..|..+.... . ..+.
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45666 444677888888886543 3489999999887755432 2 245666787764321 1 1247
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 75 id~li~~ag 83 (273)
T PRK06182 75 IDVLVNNAG 83 (273)
T ss_pred CCEEEECCC
Confidence 899998664
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=85.09 E-value=15 Score=35.87 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=47.3
Q ss_pred CceEEEeccCCChHHHHHHHHccCC---ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT---GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~---g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~~fD~Vl 254 (384)
|.+||=.| |+|+.+.+++..+-.. ..|++++.+......+... ++-.++.++.+|.++..... .-..+|.|+
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~---~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK---FPAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH---hCCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 56777555 5688999988865432 3788888776554333322 22245777788988753221 013589998
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
.-+.
T Consensus 80 h~Ag 83 (324)
T TIGR03589 80 HAAA 83 (324)
T ss_pred ECcc
Confidence 8654
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.2 Score=44.21 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=27.4
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
.+|||+|+|||.-...+-...+.-..++-++.|+. +..+-.-+++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~ 159 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAE 159 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHh
Confidence 45999999999755444445544345666777765 3344444443
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=12 Score=35.23 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=45.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~------~~~ 248 (384)
+.+||=.| |+||.+.+++..+.. ...|++++.+++.++.+.. .+ +.++..|..+.... . ..+
T Consensus 4 ~k~vlItG-asggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~---~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITG-CSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG---LEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---ceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677555 568888888876543 3589999999887765543 23 45566787764211 0 124
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
..|.|+..+
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 689998865
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=19 Score=33.41 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=49.7
Q ss_pred eEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~fD 251 (384)
+||=.|++ ||.+..++..+. ....|+.++.++..++.+.+.++..+ ++.++..|..+.... . ..+.+|
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 46656654 666777776553 33589999999998888877776544 466677888764211 0 125789
Q ss_pred EEEEcCC
Q 016730 252 RVLLDAP 258 (384)
Q Consensus 252 ~VllDaP 258 (384)
.++..+.
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9988664
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.06 E-value=27 Score=31.87 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=51.8
Q ss_pred eEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc-------ccc-CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-------KVL-GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~-------~~~-~~~~fD 251 (384)
+||=.| |+|+.+.+++..+- ....|++++.++...+.+...+...+. ++.++..|..+.. ... .....|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455444 66788888876543 334899999999888888777665553 5677778887643 110 124689
Q ss_pred EEEEcCCCC
Q 016730 252 RVLLDAPCS 260 (384)
Q Consensus 252 ~VllDaPCS 260 (384)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 999876443
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.02 E-value=17 Score=35.31 Aligned_cols=119 Identities=16% Similarity=0.216 Sum_probs=73.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
.|+.||=-|+|.|-==....+..+...+++..|++++-.....+.+++.| .+.....|..+..... +-+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 58899999998885322333444444578999999999999888888887 5666667777643211 2257
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH--------HHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK--------CSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~--------l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.|.++-+| |+...++- +.-+.+.+.. ....-+.+|-...+ ++.|.+|-.
T Consensus 115 V~ILVNNA-----GI~~~~~l--l~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~------~~~GHIV~I 171 (300)
T KOG1201|consen 115 VDILVNNA-----GIVTGKKL--LDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE------NNNGHIVTI 171 (300)
T ss_pred ceEEEecc-----ccccCCCc--cCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh------cCCceEEEe
Confidence 88888776 45544431 2334444443 22223445554444 467777643
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=84.79 E-value=22 Score=32.83 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred ceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTV 250 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~f 250 (384)
..+| +..|.|+.+.++++.+-. ...|+.++.+..+++.+...+...+. ++.++..|..+.... + ..++.
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555 445667788888876543 34899999999888888887776553 466677888764311 0 11468
Q ss_pred CEEEEcC
Q 016730 251 DRVLLDA 257 (384)
Q Consensus 251 D~VllDa 257 (384)
|.|+..+
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9998865
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=18 Score=34.24 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=48.2
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..||=.|++. +|.+..++..+.. ...|+..+.+....+.+.+..+.++.. .++..|..+.... ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHc
Confidence 367888888874 6777777765533 347888888754333444444445533 4556788875321 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.+|-
T Consensus 82 g~iDilVnnAG 92 (274)
T PRK08415 82 GKIDFIVHSVA 92 (274)
T ss_pred CCCCEEEECCc
Confidence 67899888763
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.53 E-value=18 Score=34.59 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=67.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCH-HHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKA-SRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~-~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
+|.+||=.|+ .|+.+.+++..+. ....|+.++.+. ..++.+...++..|. ++.++..|..+.... + ..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4667886665 5666777776553 335788888764 345555555555453 466778888764221 1 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHH----HHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~----~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..+|.|+..+.- +.... + . ...+.++.. .....-..++..+.+.+ +++|.+|+.+-
T Consensus 123 ~~iD~lI~~Ag~---~~~~~-~-~-~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~----~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAF---QYPQQ-S-L-EDITAEQLDKTFKTNIYSYFHMTKAALPHL----KQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcc---cCCCC-C-c-ccCCHHHHHHHHhhhhHHHHHHHHHHHHHH----hhCCeEEEEec
Confidence 468999886532 11110 0 0 011222222 22223344555666654 67888888764
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=27 Score=32.96 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=53.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.|+ +||.+.+++..+.. ...|+..+.+...++.+.+.++..|. .+.++..|..+..... ..+
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3567775665 56677877775543 34788899999888877777765554 3666678887643211 124
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.|+.++.-
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999987643
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=30 Score=31.84 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+|.+||=.|+ .|+.+..++..+. .+..|+.++.+++.++.+...++..|. .+.++..|..+.... + ..+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678886664 5666777776543 345899999998888888777777664 366777887764211 0 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
++|.|+..+-
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6899988653
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.95 E-value=21 Score=33.38 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=44.4
Q ss_pred CCceEEEeccCCC-hHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++.| |.+..++..+. ....|+..+.+....+.+++..+..|.. .++..|..+.... ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~--~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCN--FVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCc--eEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567787787765 66666666553 3347777777643223344433444432 3446788764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++.++.
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 57998887553
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.68 E-value=27 Score=32.86 Aligned_cols=79 Identities=15% Similarity=0.043 Sum_probs=45.2
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++. +|.+..++..+.. ...|+.++.+. +++...+.+.... ..+.++..|..+.... ...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 366788888887 3777777765543 34777777763 3322222222211 2344566788764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.++.
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 57899998764
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=19 Score=32.66 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=60.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-CCCCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVD 251 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-~~~~fD 251 (384)
.|.+||=. .|+|+.+..+++.+...| .|+.... +++.++.+.. ..+. .++..|..+.... . ....+|
T Consensus 5 ~~k~vlIt-GasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~---~~~~---~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVL-GGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ---ETGA---TAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEE-CCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH---HhCC---eEEecCCCCHHHHHHHHHHhCCCc
Confidence 36677744 457778888887664444 6776654 4555544432 3343 3445676653211 1 124689
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.++..+.....+- .+..+.++..... .--..++..++..+ +.+|.+|+.+.
T Consensus 78 ~li~~ag~~~~~~-------~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~g~iv~isS 132 (237)
T PRK12742 78 ILVVNAGIAVFGD-------ALELDADDIDRLFKINIHAPYHASVEAARQM----PEGGRIIIIGS 132 (237)
T ss_pred EEEECCCCCCCCC-------cccCCHHHHHHHHhHHHHHHHHHHHHHHHHH----hcCCeEEEEec
Confidence 9988654322111 1112333332222 12223445555554 66788887654
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=83.37 E-value=16 Score=36.95 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=27.2
Q ss_pred CceEEEeccCCChHHHHHHHHc--------c------CCceEEEEeCCHHHHHHHHHH
Q 016730 179 KERVIDMAAAPGGKTTYIAALM--------K------NTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~--------~------~~g~V~a~D~~~~rl~~l~~n 222 (384)
.-+|+|+|||+|..|+.+...+ . ..-.|+-+|.-..-...+-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~ 121 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQL 121 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhh
Confidence 4589999999999887553321 0 124677788754444444333
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=16 Score=33.22 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-CCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-~~~~fD~ 252 (384)
+|.++| +..|.|+.+.+++..+.. ...|+.++.+.+.++.+.+ ..+. .++..|..+.... + ....+|.
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~---~~~~---~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG---ETGC---EPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhCC---eEEEecCCCHHHHHHHHHHhCCCCE
Confidence 456777 455567777877776543 3489999998877655443 2232 3445676653211 1 1146899
Q ss_pred EEEcCCCCC
Q 016730 253 VLLDAPCSG 261 (384)
Q Consensus 253 VllDaPCSg 261 (384)
|+..+..+.
T Consensus 81 vi~~ag~~~ 89 (245)
T PRK07060 81 LVNCAGIAS 89 (245)
T ss_pred EEECCCCCC
Confidence 998776543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=83.03 E-value=33 Score=30.99 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=51.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+.. ...|+.++.++.+.+.+...++..+.+ +.++..|..+.... + ....
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE-ARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCc-eEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45777555 478888888876533 337999999998888777766665543 55666888764211 1 0145
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 83 id~vi~~ag 91 (246)
T PRK05653 83 LDILVNNAG 91 (246)
T ss_pred CCEEEECCC
Confidence 799988554
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=14 Score=34.43 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCceEEEeccCC-ChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|..||=.|++. +|.+..++..+- ....|+..+.+. +... .++++.-..+.++..|..+.... . ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~---~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKK---SLQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHH---HHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467889888875 677777777653 335788888774 3222 22222223466677888764211 0 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.++-
T Consensus 82 g~iD~lv~nAg 92 (252)
T PRK06079 82 GKIDGIVHAIA 92 (252)
T ss_pred CCCCEEEEccc
Confidence 57899988763
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=13 Score=34.69 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=46.9
Q ss_pred CCceEEEeccC-CChHHHHHHHHccC-CceEEEEeCCH--HHHHHHHHHHHHcCCceEEEEecCCCCcccc--------c
Q 016730 178 EKERVIDMAAA-PGGKTTYIAALMKN-TGLIYANEMKA--SRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------L 245 (384)
Q Consensus 178 ~g~~VLD~cag-pGgkt~~la~~~~~-~g~V~a~D~~~--~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~ 245 (384)
.|.++|=.|++ .+|.+..++..+.. ...|+..+.+. +.++.+.+ .++- .+.++..|..+.... .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE-PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC-CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 46788988985 68888888875543 34788887653 33444333 3332 345667788764211 0
Q ss_pred CCCCCCEEEEcC
Q 016730 246 GLNTVDRVLLDA 257 (384)
Q Consensus 246 ~~~~fD~VllDa 257 (384)
..+.+|.++.++
T Consensus 82 ~~g~iD~li~nA 93 (256)
T PRK07889 82 HVDGLDGVVHSI 93 (256)
T ss_pred HcCCCcEEEEcc
Confidence 125799998865
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.71 E-value=5.7 Score=39.40 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=33.9
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..++++.+.. ..|+++|.+++|++.++ ++|.+.
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~----~~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMAKASRIIAIDINPAKFELAK----KLGATD 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCCe
Confidence 35678999998865 55554444333222 26999999999988774 467753
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.66 E-value=8.9 Score=37.80 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCCceEEEeccC--CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 175 APQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 175 ~~~~g~~VLD~cag--pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
.+++|++||=.+++ -|..+..+|..++ .+|++++.++++.+.+++ .+|.+.
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 46789999876652 3444455565553 469999999888766642 367754
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.65 E-value=26 Score=32.58 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+|.+||=.| |.|+.+.++++.+. ....|+.++.+++.++.+.+.+...+. .+.++..|..+..... ..+
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467788676 46778888887553 335899999999888877777766553 4667778887653210 014
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
.+|.|+..+
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 689988865
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.46 E-value=34 Score=31.61 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=52.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.|+ .||.+.+++..+- ....|+.++.++.+++.+.+.+...+ -.++.++..|..+.... . ..
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3667886665 4667777777553 34589999999998888877776521 12466777888764211 0 11
Q ss_pred CCCCEEEEcC
Q 016730 248 NTVDRVLLDA 257 (384)
Q Consensus 248 ~~fD~VllDa 257 (384)
+.+|.++..+
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 4789998865
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=28 Score=31.59 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=69.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC-HHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~-~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.+.+||=.|+ .|+.+.+++..+. ....|++++.+ ....+.+...+...+-.++.++..|.++..... ..
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 6778888887654 33588998874 455666555555544345777788887643211 01
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
...|.|+..+.....+.+...+ +......+.....-...+++.+...+ -+.+|.+++.
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~---~~~~~~~~~~n~~g~~~l~~~~~~~~---~~~~~~~~~~ 141 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSIT---EAQWDDLFASNLKAPFFLSQAAAPQL---RKQRGAIVNI 141 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCC---HHHHHHHHHHhchhHHHHHHHHHHHH---hhCCeEEEEE
Confidence 3589999865422222111110 00011122233344555777776654 2446666654
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=25 Score=33.19 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=47.4
Q ss_pred CCceEEEeccC-CChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAA-PGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cag-pGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++ .+|.+..+++.+.. ...|+.+..+....+.+++..+.+|. ...+..|..+.... ...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA--FVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC--ceEEecCCCCHHHHHHHHHHHHHhc
Confidence 35678888886 47888888876643 34777666554333444444444442 34567888764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.+|-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 57899998774
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=82.11 E-value=0.82 Score=38.68 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=48.3
Q ss_pred EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 231 v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
..+..+|++.....+. ..||.|++|+= .-.++|++ |+. +++....+++ ++||+++-
T Consensus 33 L~L~~gDa~~~l~~l~-~~~Da~ylDgF-----sP~~nPel---Ws~-----------e~~~~l~~~~----~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLD-ARFDAWYLDGF-----SPAKNPEL---WSE-----------ELFKKLARLS----KPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB--T-EEEEEE-SS------TTTSGGG---SSH-----------HHHHHHHHHE----EEEEEEEE
T ss_pred EEEEEcHHHHHHHhCc-ccCCEEEecCC-----CCcCCccc---CCH-----------HHHHHHHHHh----CCCcEEEE
Confidence 4556678766433232 68999999962 12578874 343 4666667765 99999874
Q ss_pred EeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 311 STCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 311 sTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
.||+ ..|...|...||.+...
T Consensus 89 ys~a-------~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 89 YSSA-------GAVRRALQQAGFEVEKV 109 (124)
T ss_dssp S--B-------HHHHHHHHHCTEEEEEE
T ss_pred eech-------HHHHHHHHHcCCEEEEc
Confidence 4442 45889999999988654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.10 E-value=9.2 Score=37.66 Aligned_cols=103 Identities=24% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEE-EecCCCCc-ccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNEL-PKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~-~~~D~~~~-~~~~~~~~fD 251 (384)
..++|++||=.+ |.||.++.+.++.+..| .+++.-.+++..+ .++.+|.+.+.- ...|..+- .....+..+|
T Consensus 139 ~l~~g~~VLV~g-aaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 139 GLKPGETVLVHG-AAGGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCCCCEEEEec-CCchHHHHHHHHHHHcCCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 467899999554 45555555555544444 6666666665554 446678764332 22222111 1222334799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|+- +- | ...+..++..| +++|+++....+-
T Consensus 214 vv~D-~v----G------------------------~~~~~~~l~~l----~~~G~lv~ig~~~ 244 (326)
T COG0604 214 VVLD-TV----G------------------------GDTFAASLAAL----APGGRLVSIGALS 244 (326)
T ss_pred EEEE-CC----C------------------------HHHHHHHHHHh----ccCCEEEEEecCC
Confidence 9974 21 1 12445566665 8999999866544
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=82.06 E-value=38 Score=30.86 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=52.8
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.|+ +|+.+.+++..+-.. ..|+.++.+......+...+...+. ++.++..|..+.... . ....
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 566776664 577777777755433 4899999999888887777766543 467778888764211 0 0136
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
.|.|+..+..
T Consensus 81 ~d~vi~~ag~ 90 (250)
T TIGR03206 81 VDVLVNNAGW 90 (250)
T ss_pred CCEEEECCCC
Confidence 8999987654
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.82 E-value=10 Score=37.55 Aligned_cols=95 Identities=22% Similarity=0.276 Sum_probs=55.3
Q ss_pred CCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCC
Q 016730 175 APQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGL 247 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~ 247 (384)
.+++|++||=.++ |+.+. .+++..+ ...|+++|.++.+.+.++ .+|.+.+ +..+-..+ .... .
T Consensus 183 ~~~~g~~vlI~g~--g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~----~~g~~~~--i~~~~~~~~~~v~~~~-~ 252 (365)
T cd08278 183 KPRPGSSIAVFGA--GAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAK----ELGATHV--INPKEEDLVAAIREIT-G 252 (365)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCcEE--ecCCCcCHHHHHHHHh-C
Confidence 4678899888754 45444 4444443 236999999998877654 3666432 22221111 1112 3
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..||.|+- |+|.+ ..+..+++.+ +++|+++..
T Consensus 253 ~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALD---TTGVP-------------------------AVIEQAVDAL----APRGTLALV 284 (365)
T ss_pred CCCcEEEE---CCCCc-------------------------HHHHHHHHHh----ccCCEEEEe
Confidence 56998874 44432 1356677775 888988753
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.81 E-value=21 Score=34.11 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |+||.+..++..+.. ...|+.++.++++++.+.+.+.. +. .+..+..|..+..... ..+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-DD-RVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-CC-cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467788555 556677777776543 34899999999887776655431 22 3444457877642110 115
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+.++-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 7899998764
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=81.79 E-value=8.6 Score=36.85 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=32.6
Q ss_pred cCCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.+ |.|+.+. .+|..++ ..|++++.++++.+.+++ +|++.
T Consensus 139 ~~~~~g~~vlI~g-a~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~ 191 (329)
T cd08294 139 CKPKAGETVVVNG-AAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDA 191 (329)
T ss_pred cCCCCCCEEEEec-CccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCE
Confidence 4577899988554 3444444 4444442 479999989888777643 67754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.78 E-value=7.2 Score=37.98 Aligned_cols=101 Identities=26% Similarity=0.391 Sum_probs=56.1
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCc-e-EEEEeCCHHHHHHHHHHHHHcCCceEEEEec-C----CCCccccc
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-L-IYANEMKASRLKSLTANLHRMGVTNTIVCNY-D----GNELPKVL 245 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g-~-V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D----~~~~~~~~ 245 (384)
....++|++||=.++ |+.+..++++....| . |++++.++++.+.+++ +|.+.+.-... + ...+....
T Consensus 157 ~~~~~~g~~vlI~g~--g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 157 RAGVRPGDTVLVFGA--GPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 345678999988543 555544444433323 4 8899888888766643 47654322111 1 01111222
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+..||.|+- |+|.. ..+..+++.+ +++|+++..
T Consensus 231 ~~~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 264 (343)
T cd05285 231 GGKGPDVVIE---CTGAE-------------------------SCIQTAIYAT----RPGGTVVLV 264 (343)
T ss_pred CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 3356998864 44431 1345667765 899998743
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=81.78 E-value=22 Score=30.27 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=52.8
Q ss_pred EEEeccCCChHHHHHHHHccC--CceEEEEeCC--HHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKN--TGLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNT 249 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~--~g~V~a~D~~--~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~ 249 (384)
||=.| |.||.+..++..+-. ...|+.+..+ ..+.+.+...++..+ .++.++..|..+.... .....
T Consensus 3 ~lItG-a~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 3 VLITG-ASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEET-TTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEC-CCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 44344 446667766664432 3478888888 888888888888878 6788888998764211 01268
Q ss_pred CCEEEEcCCCCC
Q 016730 250 VDRVLLDAPCSG 261 (384)
Q Consensus 250 fD~VllDaPCSg 261 (384)
+|.++..+....
T Consensus 81 ld~li~~ag~~~ 92 (167)
T PF00106_consen 81 LDILINNAGIFS 92 (167)
T ss_dssp ESEEEEECSCTT
T ss_pred cccccccccccc
Confidence 999999765433
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=81.58 E-value=9.2 Score=37.17 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=33.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.++ +|+.+..+.++... ...|++.+.++++.+.+++. +|.+.
T Consensus 147 ~~~~~g~~VlI~Ga-~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~ 200 (338)
T cd08295 147 CKPKKGETVFVSAA-SGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDD 200 (338)
T ss_pred cCCCCCCEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCce
Confidence 35788999996554 45555444443322 24788888888887776542 57754
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=81.47 E-value=8.5 Score=37.35 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=31.6
Q ss_pred CCCC--ceEEEeccCCChHH---HHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 176 PQEK--ERVIDMAAAPGGKT---TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 176 ~~~g--~~VLD~cagpGgkt---~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
.++| ++||=.++ +|+.+ ..+|..++ ...|++++.++++.+.+++. +|.+.+
T Consensus 150 ~~~g~~~~VlI~ga-~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~v 205 (345)
T cd08293 150 ITPGANQTMVVSGA-AGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAA 205 (345)
T ss_pred CCCCCCCEEEEECC-CcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEE
Confidence 5555 88886664 34444 44445442 12699999998887766543 677643
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.30 E-value=27 Score=32.18 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=50.4
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCccccc--------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+.+||=.|+ .|+.+.+++..+.. ...|+.+|.+...++.+...+... +-..+.++..|..+..... ...
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346776664 57777777765533 348999999988877766655432 3235677788887642110 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.|+..+.
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6899988764
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=81.18 E-value=26 Score=32.36 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------c-CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~-~~~ 248 (384)
.|.+||=.|+ .|+.+.+++..+. ....|+.+|.++.+...+.+. .+ .++.++..|..+.... . ..+
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3667885555 5777888887664 335899999887766554332 33 2466778888874221 0 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 84 ~id~li~~ag~ 94 (255)
T PRK05717 84 RLDALVCNAAI 94 (255)
T ss_pred CCCEEEECCCc
Confidence 68999997754
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.17 E-value=32 Score=31.35 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=51.0
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+- ....|++++.++..+..+...+.. +. ++.++..|..+..... ....
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GG-RAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45666454 55677777776543 334899999999888777666654 32 4667788887653221 1146
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.|+..+..
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999987654
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=40 Score=30.87 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=51.5
Q ss_pred ceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCEEEEc
Q 016730 180 ERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLD 256 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~VllD 256 (384)
.+||=.| |+|+.+.++++.+. ....|++.+.++.....+.+.....+. .+.++..|..+..... .....|.|+.+
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 3566444 56778888877654 335899999988888777776666664 3667778887653221 11379999986
Q ss_pred CC
Q 016730 257 AP 258 (384)
Q Consensus 257 aP 258 (384)
+.
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.91 E-value=9.3 Score=37.76 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=33.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC-c-eEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT-G-LIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~-g-~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
.+++|++||=.++ |+.+..++++.... . .|+++|.++.+++.++ .+|++.
T Consensus 181 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~----~~ga~~ 232 (365)
T cd08277 181 KVEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK----EFGATD 232 (365)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCc
Confidence 4678999987753 66555444333222 2 6999999999887774 467753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.68 E-value=32 Score=31.81 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.|+ .|+.+..+++.+- ....|+.++.+ ...+.+.+.+...+ .++.++..|..+.... + ..+
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4667876666 4566777776553 33478888877 55666666666555 3466777888764321 1 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.++..+.
T Consensus 91 ~id~li~~ag 100 (258)
T PRK06935 91 KIDILVNNAG 100 (258)
T ss_pred CCCEEEECCC
Confidence 6899988654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=80.51 E-value=11 Score=38.50 Aligned_cols=48 Identities=8% Similarity=-0.052 Sum_probs=33.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.+|++|+=+|+|+=|..........+ ..|+.+|+++.|+..++ .+|..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~----~~G~~ 247 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAA----MEGYE 247 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHH----hcCCE
Confidence 47999999999986655433332222 47999999999977664 36763
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=35 Score=32.86 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=50.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |+||.+.+++..+.. ...|++++.++++++.+...+. .+.++..|..+.... . ..+
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356777566 567788888876543 3489999999887776655443 256667888765321 0 125
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.|+.++..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 78999998753
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=16 Score=34.13 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=44.1
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+..||=.| |+|+.+.+++..+.. ...|++.+.++..... ..++.++..|..+.... . ..+.
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 34566555 568888888876543 3489999988765432 12456667788764221 0 1246
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+-
T Consensus 74 ~d~li~~ag 82 (270)
T PRK06179 74 IDVLVNNAG 82 (270)
T ss_pred CCEEEECCC
Confidence 899998654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=45 Score=31.86 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=52.0
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
|.+||=.| |+||.+.+++..+. .+..|++++.+.++++.+.+.+...+. .+.++..|..+.... . ..+.
T Consensus 40 ~k~vlItG-asggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTG-ASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45666444 56778888877553 335899999999998888877766554 355667888764211 1 1247
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
.|.|+..+
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89999854
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.14 E-value=9.5 Score=37.68 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=34.2
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..++++....| .|++++.++++++.+ +.+|...
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~----~~~Ga~~ 235 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA----KKFGVTE 235 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCce
Confidence 35678999987754 666555444433222 699999999988766 4477653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 384 | ||||
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 1e-51 | ||
| 3a4t_A | 274 | Crystal Structure Of Atrm4 From M.Jannaschii With S | 3e-46 | ||
| 2frx_A | 479 | Crystal Structure Of Yebu, A M5c Rna Methyltransfer | 2e-40 | ||
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 3e-34 | ||
| 3m6u_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 5e-31 | ||
| 3m6w_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 5e-31 | ||
| 3m4x_A | 456 | Structure Of A Ribosomal Methyltransferase Length = | 3e-30 | ||
| 3m6x_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 4e-30 | ||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 2e-28 | ||
| 2b9e_A | 309 | Human Nsun5 Protein Length = 309 | 4e-26 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 5e-16 | ||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 6e-16 |
| >pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 | Back alignment and structure |
|
| >pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 | Back alignment and structure |
|
| >pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479 | Back alignment and structure |
|
| >pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450 | Back alignment and structure |
|
| >pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464 | Back alignment and structure |
|
| >pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 | Back alignment and structure |
|
| >pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 | Back alignment and structure |
|
| >pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 | Back alignment and structure |
|
| >pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429 | Back alignment and structure |
|
| >pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 483 bits (1246), Expect = e-173
Identities = 116/319 (36%), Positives = 175/319 (54%), Gaps = 10/319 (3%)
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ LD GY++ +++ + + E+ EKP P C R NTLK +DL
Sbjct: 3 LSPSMLDKLLRLGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLKISVQDLVK 61
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
L +G W+K G + I +TPE++ G +Q ASS P +AL P+ E
Sbjct: 62 RLNKKGFQFKR-VPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGE 120
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V DMAAAPGGKT+Y+A LM+N G+IYA ++ +RL+ NL R+GV N I+ +
Sbjct: 121 IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ ++ D++LLDAPC+G+G I K+ K +++++DI+ C LQ +L+ ++++
Sbjct: 181 IGELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL-- 236
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
K GG +VYSTCS+ ENE VI +AL DV+L+P L +G ++
Sbjct: 237 --KPGGILVYSTCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIELSEEIK 292
Query: 361 KTRRFYPHVHNMDGFFVAK 379
RR YP VH GFF+AK
Sbjct: 293 NARRLYPDVHETSGFFIAK 311
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 445 bits (1146), Expect = e-155
Identities = 105/317 (33%), Positives = 162/317 (51%), Gaps = 21/317 (6%)
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
+ Y + FL M + + + + ++P +R NTLK D + G L
Sbjct: 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTL 64
Query: 130 DPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVID 184
P W + G + + +P+G+T E+++G + +Q ASS LPV AL +RV+D
Sbjct: 65 TP-IPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMD 123
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
+AAAPG KTT I+A M N G I ANE ASR+K L AN+ R G++N + ++DG
Sbjct: 124 VAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA 183
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+ D +LLDAPCSG GV+ KD + S E Q+ + Q++LI +A + +
Sbjct: 184 VP-EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RP 238
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
GG +VYSTC++ ENEAV + + V+ +P G F + E
Sbjct: 239 GGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP--------GANKALTEEGF 290
Query: 363 RRFYPHVHNMDGFFVAK 379
+P +++ +GFFVA+
Sbjct: 291 LHVFPQIYDCEGFFVAR 307
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 432 bits (1113), Expect = e-150
Identities = 97/307 (31%), Positives = 142/307 (46%), Gaps = 17/307 (5%)
Query: 76 EFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
+ + + E+ E +++ E R LR NTLK + L P
Sbjct: 4 KAFLSRMAELLGE-EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRI---SPWPLRP-IP 58
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
W + G + P G P + AG Y +Q S+ + L P+ ERV+D+AAAPGGKTT
Sbjct: 59 WCQEGFYYPEEARP-GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
++AA M GL+ ANE+ R++ L N+ R G V L + G RVL
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL-AVTQAPPRALAEAFG-TYFHRVL 175
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCSG G+ KD ++ + +QK L+ A ++ GG +VYSTC+
Sbjct: 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL----GPGGVLVYSTCT 231
Query: 315 IMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
ENE V+ + LK + +L L G + E +P L KT R +PH
Sbjct: 232 FAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGE--GNPELLKTARLWPHRLEG 289
Query: 373 DGFFVAK 379
+G F+A+
Sbjct: 290 EGHFLAR 296
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 429 bits (1104), Expect = e-149
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 16/308 (5%)
Query: 74 YNEFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+ I + E + + + R N LK D+ + + P
Sbjct: 8 LPQQFIKKYRLLLGE-EASDFFSALEQGSVKKGFRWNPLKPAGLDMVQTYHSEELQPAP- 65
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
+S G + G + + AG+ Q S+ + A A + E+V+D+ AAPGGK
Sbjct: 66 --YSNEGFLG----TVNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGK 119
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
+T +AA MK GL+ NE+ R K L+ N+ R GV+N IV N+ EL DR
Sbjct: 120 STQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS-GFFDR 178
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
+++DAPCSG G+ KD + + E C Q++++ +AI M+ K+ G ++YST
Sbjct: 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML----KNKGQLIYST 234
Query: 313 CSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
C+ ENE +I + ++ V + L E LEKT R +PH
Sbjct: 235 CTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSG--RSEWGSVAGLEKTIRIWPHKDQG 292
Query: 373 DGFFVAKV 380
+G FVAK+
Sbjct: 293 EGHFVAKL 300
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 411 bits (1060), Expect = e-145
Identities = 115/290 (39%), Positives = 165/290 (56%), Gaps = 24/290 (8%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++ ++ + +R NTLK L L N+GV L+ + V S IG+TP
Sbjct: 1 MMIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK--TFLDYAFEVKKSPFSIGSTP 58
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
EY+ G+YM QS SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+
Sbjct: 59 EYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK 118
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESV 271
+R K+L +N++RMGV NTI+ N D + L N + D++LLDAPCSG + K+
Sbjct: 119 TRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNR-- 176
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
+ S EDI+ CS QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR
Sbjct: 177 --NVSEEDIKYCSLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKR 230
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPS-LEKTRRFYPHVHNMDGFFVAK 379
DV+L+ + F+ ++ T R +P + FF+AK
Sbjct: 231 NDVELIIIKAN-------EFKGINIKEGYIKGTLRVFPP---NEPFFIAK 270
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 387 bits (995), Expect = e-135
Identities = 88/302 (29%), Positives = 131/302 (43%), Gaps = 32/302 (10%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV----------------GLVV 142
P +R NTLKT D+ D +G + + L+V
Sbjct: 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV 66
Query: 143 YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN 202
+ +Q + P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN
Sbjct: 67 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126
Query: 203 TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAPCSG 261
G I+A ++ A RL S+ L R GV+ + D + + V +LLD CSG
Sbjct: 127 QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG 186
Query: 262 TGVISKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G+ S+ + + + + Q++ + A+ S +VYSTCS+ E
Sbjct: 187 SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-----PSLQRLVYSTCSLCQEE 241
Query: 320 NEAVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
NE V+ AL++ +L P + +G F P E R P GFFV
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFV 295
Query: 378 AK 379
A
Sbjct: 296 AV 297
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 5e-84
Identities = 95/309 (30%), Positives = 148/309 (47%), Gaps = 19/309 (6%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y +LI + + ++ I +R NTLK ++ L GV +
Sbjct: 155 YLAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVR 214
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
S+ L + + + G ++Q +S + + L P+ E V+D+AAAPGG
Sbjct: 215 -SERVPTILKI-KGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGG 272
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT++A LMKN G IYA ++ R+K L + RMG+ D + P+++G D
Sbjct: 273 KTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVAD 332
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
+VLLDAPC+ +G I K+ ++ + I + S LQ++L+ +A +V K GG ++Y+
Sbjct: 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV----KPGGRLLYT 388
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TCSI ENE I + L + KLVP + LE T R +PH H
Sbjct: 389 TCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPG------------FLEGTMRAWPHRH 436
Query: 371 NMDGFFVAK 379
+ GFF A
Sbjct: 437 STIGFFYAL 445
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 5e-75
Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 31/311 (9%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ L + +P + ++E+ + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP 201
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ + ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGG
Sbjct: 202 -HADYPDAVRL-ETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+I + + A ++ RL + NL R+G+ T+ DG + G D
Sbjct: 260 KTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPSQWCGEQQFD 317
Query: 252 RVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
R+LLDAPCS TGVI + D +K + DI + + LQ +++ A + K+GG +V
Sbjct: 318 RILLDAPCSATGVIRRHPD--IKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLV 371
Query: 310 YSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
Y+TCS++ EN I L++ D +L G + ++ P
Sbjct: 372 YATCSVLPEENSLQIKAFLQRTADAELCETGTP-----------------EQPGKQNLPG 414
Query: 369 VHNMDGFFVAK 379
DGFF AK
Sbjct: 415 AEEGDGFFYAK 425
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 35/164 (21%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
ALAP+ E + D+ G E+ R + + +N +GV++ I
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI 78
Query: 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292
+ + D + + + GV
Sbjct: 79 AVQQGAPRAFDDV-PDNPDVIFIGGGLTAPGV---------------------------- 109
Query: 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336
GG +V + ++ E+E ++ K+ +
Sbjct: 110 --FAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGTIS 148
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 46/365 (12%), Positives = 101/365 (27%), Gaps = 119/365 (32%)
Query: 3 LNIREESDEFR-LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSR-KEY 60
+ ++ D + + +KEEI+ + R+ F L K +++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-LRL---------FWTLLSKQEEMVQKF 82
Query: 61 VQQ-LKLDLGSYYGYNEFLIGAL-VEMFPPVELMELIESFEKPRPICLRTNTLKTR---- 114
V++ L+++ Y FL+ + E P + + + + R N + +
Sbjct: 83 VEEVLRIN----YK---FLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKYNVS 132
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
R L + L P +++ G + G
Sbjct: 133 RLQPYLKLRQALLELRPAK-----NVLID------G-----VLGS--------------- 161
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
GKT + + + + + + + N C
Sbjct: 162 ----------------GKTWVALDVCLSYKVQCKMDF----------KIFWLNLKN---C 192
Query: 235 NYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDESVKTSKS----LEDIQKCSYLQKQ 289
N L + L +D + + + S++ + + C L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--L--- 247
Query: 290 LIL------AAIDMVDANSKSGGYIVYSTCSIMV-TENEAVIDYALKKRDVKLVPCGLDF 342
L+L A + + + C I++ T + V D+ + LD
Sbjct: 248 LVLLNVQNAKAWNAFNLS-----------CKILLTTRFKQVTDFLSAATTTHIS---LDH 293
Query: 343 GRQGF 347
Sbjct: 294 HSMTL 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-06
Identities = 67/464 (14%), Positives = 135/464 (29%), Gaps = 156/464 (33%)
Query: 18 EEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK-----LDLGSY- 71
I+ E++QP + I++ R+ ++ + ++ SR + +L+ L
Sbjct: 96 SPIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 72 --YGYNEFLIGA--------------LVEMFP-------------PVELMELIESF---- 98
G ++G+ + P ++E+++
Sbjct: 154 LIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 99 --------EKPRPICLRTNTLKTRRRDL-------ADVLINRGVN----LDPLSKWSKVG 139
+ I LR ++++ R L +L+ V + + K+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268
Query: 140 LV------VYDSQVPIGATPEYM----AGFYMLQSASSFLPVMALAPQE--KE------R 181
L+ V D T + + S L + PQ+ +E R
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 182 VIDMAAAPGGKTTYIAALMKN-----TGLIYANEMKASR-----LKSLTANLHRMGVTNT 231
+ + IA +++ + N K + L L +R
Sbjct: 329 RLSI----------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 232 IVCNYDGNELPKVLGL-------NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS 284
V + +L L + V V+ ++ K +++ S+ I
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQ-PKESTISIPSIY-LE 434
Query: 285 YLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID-YAL-KKRDV-KLVPCGLD 341
K A+ + +++D Y + K D L+P LD
Sbjct: 435 LKVKLENEYAL------------------------HRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 342 FGRQGFVRFREH-RFHPSLEKTRRFYPHVHNMDGFFVAKVYLDL 384
+ F H H L+ H M F V+LD
Sbjct: 471 ----QY--FYSHIGHH--LKNIE----HPERMTLF--RMVFLDF 500
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
+E V+D+ G Y++ ++ G +YA +++ + ++++G+ N
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 233 VCNYDGNELPKVLGLNTVDRVLL 255
V + N++P L NTVD + +
Sbjct: 92 VLKSEENKIP--LPDNTVDFIFM 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 100.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 100.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 100.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 100.0 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 100.0 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 100.0 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 100.0 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 100.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 100.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.79 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.77 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.73 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.71 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.71 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.7 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.69 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.68 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.68 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.68 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.67 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.67 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.64 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.63 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.63 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.61 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.61 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.6 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.6 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.59 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.58 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.57 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.57 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.57 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.55 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.55 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.54 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.53 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.53 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.52 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.5 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.49 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.49 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.47 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.46 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.46 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.46 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.45 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.45 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.45 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.45 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.44 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.44 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.44 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.43 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.43 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.42 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.42 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.42 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.41 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.41 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.41 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.4 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.4 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.39 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.39 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.39 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.38 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.37 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.37 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.37 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.36 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.36 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.35 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.35 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.35 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.35 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.34 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.34 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.34 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.34 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.33 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.33 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.33 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.32 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.32 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.31 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.31 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.3 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.3 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.3 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.29 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.29 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.29 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.29 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.29 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.28 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.28 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.27 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.27 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.27 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.27 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.26 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.26 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.26 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.25 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.25 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.25 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.25 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.25 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.25 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.24 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.24 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.24 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.24 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.24 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.23 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.23 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.23 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.22 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.22 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.22 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.22 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.21 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.2 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.2 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.19 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.19 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.19 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.19 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.19 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.18 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.18 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.18 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.17 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.17 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.17 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.17 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.17 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.16 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.16 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.15 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.15 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.15 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.15 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.15 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.14 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.14 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.14 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.14 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.14 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.13 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.13 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.13 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.12 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.12 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.11 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.11 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.1 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.1 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.09 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.09 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.08 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.08 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.08 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.08 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.07 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.06 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.06 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.06 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.05 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.05 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.04 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.03 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.03 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.03 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.02 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.02 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.02 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.02 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.02 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.01 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.01 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.01 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.01 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.01 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.0 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.99 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.98 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.97 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.97 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.97 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.97 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.96 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.96 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.96 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.96 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.96 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.95 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.95 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.95 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.94 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.92 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.92 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.92 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.92 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.92 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.91 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.91 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.91 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.91 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.91 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.9 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.9 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.9 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.9 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.89 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.89 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.89 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.88 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.88 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.88 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.88 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.86 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.86 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.86 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.85 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.85 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.85 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.84 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.83 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.81 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.81 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.81 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.81 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.81 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.8 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.8 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.78 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.78 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.78 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.78 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.77 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.75 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.7 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.69 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.68 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.65 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.65 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.63 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.6 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.59 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.57 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.55 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.55 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.54 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.53 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.52 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.51 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.51 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.51 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.49 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.49 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.47 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.44 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.44 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.42 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.4 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.39 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.39 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.35 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.35 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.31 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.3 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.25 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.24 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.23 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.22 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.21 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.19 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.14 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.13 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.08 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.97 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.92 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.8 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.79 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.79 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.6 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.59 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.57 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.51 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.49 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.04 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.04 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.89 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.87 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.87 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.82 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.82 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.65 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.56 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.35 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.17 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.03 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.97 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.96 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.78 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.57 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.55 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.55 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.54 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.53 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 95.5 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.36 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.32 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.27 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.25 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.23 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.07 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.05 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 95.05 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.03 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.01 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.98 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.91 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.89 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.88 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 94.87 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.81 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.7 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.57 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.55 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.4 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 94.38 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.24 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 93.88 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.75 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.7 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.7 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.69 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 93.68 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.41 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.36 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.35 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 93.32 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.32 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.24 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.15 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.1 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.09 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 93.02 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 92.71 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 92.47 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.45 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.31 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.29 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.27 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.25 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.25 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 92.16 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.99 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.97 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.96 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.86 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 91.85 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.36 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 91.32 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.3 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 91.24 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 91.14 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 90.99 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 90.89 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 90.89 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 90.82 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 90.79 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 90.73 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 90.64 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 90.56 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.55 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 90.49 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 90.49 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 90.42 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 90.35 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 90.34 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 90.27 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 90.15 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.08 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.02 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.96 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 89.92 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 89.88 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 89.77 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 89.69 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 89.62 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 89.5 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.49 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.47 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 89.42 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.4 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 89.37 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 89.35 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 89.31 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 89.3 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.26 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 89.21 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 89.19 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 89.14 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.08 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 89.05 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 88.83 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.78 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 88.72 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 88.67 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 88.61 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.59 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 88.5 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 88.43 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 88.41 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 88.32 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 88.3 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 88.29 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.16 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 88.12 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 88.12 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.1 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 88.07 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 88.04 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 88.03 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.03 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 88.01 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 88.01 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 88.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 87.92 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 87.89 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 87.81 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 87.68 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 87.66 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 87.62 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 87.45 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 87.44 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 87.44 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 87.43 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 87.28 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 87.01 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 86.99 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 86.94 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 86.88 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 86.84 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 86.76 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 86.72 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 86.71 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.64 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 86.51 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 86.46 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 86.44 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.18 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 86.14 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 86.12 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 86.11 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 86.03 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 86.02 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 86.02 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 86.02 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 85.95 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 85.95 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 85.91 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 85.78 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.71 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 85.68 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 85.62 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.53 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 85.38 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 85.32 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 85.3 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 85.3 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 85.24 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 85.17 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 85.16 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 85.14 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 85.04 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 85.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 84.99 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 84.88 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 84.86 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 84.82 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 84.63 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 84.54 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 84.51 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 84.49 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 84.44 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 84.29 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 84.17 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 84.14 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.99 |
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-65 Score=498.42 Aligned_cols=308 Identities=37% Similarity=0.666 Sum_probs=273.3
Q ss_pred hhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecC
Q 016730 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (384)
Q Consensus 66 ~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 145 (384)
+.++++|++|.||+++|.+.|| ++++++++++++++|+++|||++|++++++.+.|.+.|+.+++. +|++.++.+...
T Consensus 8 ~~l~~~~~~P~w~~~~~~~~~g-~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~ 85 (315)
T 1ixk_A 8 LDKLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTRE 85 (315)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE-TTEEEEEEEEEC
T ss_pred HHHHHHhCCcHHHHHHHHHHcc-HHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeEC-CCCCceEEEeCC
Confidence 4688999999999999999999 88999999999999999999999999999999999999999888 899999887555
Q ss_pred CCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 146 ~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
+.++..+++|.+|++++||.+|++++.++++++|++|||+|||||++|+++++.+++.+.|+|+|+++.+++.+++|+++
T Consensus 86 ~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~ 165 (315)
T 1ixk_A 86 PFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR 165 (315)
T ss_dssp SSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCcccChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999997778999999999999999999999
Q ss_pred cCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 226 ~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
+|+.++.++++|+..++.. .+.||+|++||||||+|+++++|+++|.++++++..+...|.++|.+++++| |||
T Consensus 166 ~g~~~v~~~~~D~~~~~~~--~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~L----kpG 239 (315)
T 1ixk_A 166 LGVLNVILFHSSSLHIGEL--NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL----KPG 239 (315)
T ss_dssp HTCCSEEEESSCGGGGGGG--CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE----EEE
T ss_pred hCCCeEEEEECChhhcccc--cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhC----CCC
Confidence 9999999999999887642 3689999999999999999999999999999999999999999999999997 999
Q ss_pred cEEEEEeccCCccccHHHHHHHHhcCCCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 306 GYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 306 G~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
|+|||+|||++++|||++|++++++++++++++. .+.+|+..|....+.+...+++|++||.+++||||+|+|+|.
T Consensus 240 G~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~ 315 (315)
T 1ixk_A 240 GILVYSTCSLEPEENEFVIQWALDNFDVELLPLK--YGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315 (315)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHSSEEEECCC--SSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEEEEEEEC
T ss_pred CEEEEEeCCCChHHhHHHHHHHHhcCCCEEecCC--ccccCcccccccccccccCCEEEECCCCCCcccEEEEEEEEC
Confidence 9999999999999999999999999999988764 333455444444444445678999999999999999999984
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-63 Score=502.43 Aligned_cols=294 Identities=31% Similarity=0.451 Sum_probs=258.6
Q ss_pred HhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCC-eEEEEcCCCCCHHHHHHHHHHcCCccc---CCCccccccEEEecCC
Q 016730 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRP-ICLRTNTLKTRRRDLADVLINRGVNLD---PLSKWSKVGLVVYDSQ 146 (384)
Q Consensus 71 ~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p-~~~RvN~~k~~~~~~~~~L~~~g~~~~---~~~~~~~~~~~~~~~~ 146 (384)
.+++|+||+++|.+.|| ++++++++++++++| +++|||++|+ +++.+.+ |+.++ ++ +|++.+++ . .
T Consensus 5 ~~~~P~w~~~~~~~~~g-~e~~~~~~a~~~~~~~~~lRvN~lk~--~~~~~~~---~~~~~~~~~~-~~~~~~~~--~-~ 74 (456)
T 3m4x_A 5 ATTLPQQFIKKYRLLLG-EEASDFFSALEQGSVKKGFRWNPLKP--AGLDMVQ---TYHSEELQPA-PYSNEGFL--G-T 74 (456)
T ss_dssp --CCCHHHHHHHHHHHG-GGHHHHHHHHHHCCCCCEEECCTTST--THHHHHH---HHTCSSCCBC-TTCTTEEE--S-C
T ss_pred hhhChHHHHHHHHHHhC-HHHHHHHHHcCCCCCCcEEEEcCccH--HHHHHhc---CCcccccCCC-CCCcceEE--c-C
Confidence 47899999999999999 569999999999999 9999999998 5665543 66666 77 89999987 2 2
Q ss_pred CCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc
Q 016730 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (384)
Q Consensus 147 ~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~ 226 (384)
.++.+|+|.+|.|++||++|++++.+|++++|++|||+|||||+||+++++++++.+.|+|+|+++.|++.+++|++++
T Consensus 75 -~~~~~~~~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~ 153 (456)
T 3m4x_A 75 -VNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW 153 (456)
T ss_dssp -CCTTSHHHHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCCCChHHhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 227 GVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 227 g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
|+.|+.+++.|+..+.... .+.||+||+||||||+|+++++|+++|.++++++..++.+|+++|.+|+++| ||||
T Consensus 154 g~~nv~v~~~Da~~l~~~~-~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpGG 228 (456)
T 3m4x_A 154 GVSNAIVTNHAPAELVPHF-SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML----KNKG 228 (456)
T ss_dssp TCSSEEEECCCHHHHHHHH-TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTE----EEEE
T ss_pred CCCceEEEeCCHHHhhhhc-cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhc----CCCc
Confidence 9999999999998775433 3689999999999999999999999999999999999999999999999997 9999
Q ss_pred EEEEEeccCCccccHHHHHHHHhcCCCEEeecCCCCC-CCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFG-RQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 307 ~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+|||||||++++|||++|++++++++++++++....+ .++...|... +....++|++||.+++||||+|+|+|.
T Consensus 229 ~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~~P~~~~~dGFF~A~l~k~ 303 (456)
T 3m4x_A 229 QLIYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSV---AGLEKTIRIWPHKDQGEGHFVAKLTFH 303 (456)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHSSEEEECCCCSSCCEECCGGGSSS---TTGGGSEEECTTTSSSSCEEEEEEEEC
T ss_pred EEEEEEeecccccCHHHHHHHHHhCCCEEEeccccccccccccccccc---cccCCeEEECCCCCCCcCeEEEEEEEC
Confidence 9999999999999999999999988899988753221 1222222211 234568999999999999999999984
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-62 Score=499.14 Aligned_cols=296 Identities=32% Similarity=0.503 Sum_probs=264.2
Q ss_pred ChHHHHHHHHHhCCHHHHHHHHHHcCCC-CCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCC
Q 016730 74 YNEFLIGALVEMFPPVELMELIESFEKP-RPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGAT 152 (384)
Q Consensus 74 ~p~wl~~~l~~~~~~~~~~~~~~~~~~~-~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (384)
+|+||+++|.+.|| +++++++++++++ +|+++|||++|++++++.+.| |+.++++ +|++.++++ .....+..+
T Consensus 2 lP~w~~~~~~~~~g-~e~~~~l~a~~~~~~~~~lRvN~lk~~~~~~~~~l---~~~~~~~-~~~~~g~~l-~~~~~~~~~ 75 (464)
T 3m6w_A 2 LPKAFLSRMAELLG-EEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRIS---PWPLRPI-PWCQEGFYY-PEEARPGPH 75 (464)
T ss_dssp CCHHHHHHHHHHHG-GGHHHHHHHHHTSCCCCEEEECTTTCCHHHHHHHC---SSCCEEE-TTEEEEEEC-CTTCCCSSS
T ss_pred CcHHHHHHHHHHHH-HHHHHHHHHcCCCCCCeEEEEcCCCCCHHHHHHHc---CCCceec-CCCCceEEE-CCCCCcccC
Confidence 79999999999999 6799999999999 999999999999999998876 7888887 899999885 444467999
Q ss_pred cccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 153 ~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
|+|.+|.|++||++|++++.++++++|++|||+|||||+||+++++++++.+.|+|+|+|+.|++.+++|++++|+. +.
T Consensus 76 ~~~~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~ 154 (464)
T 3m6w_A 76 PFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LA 154 (464)
T ss_dssp HHHHTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CE
T ss_pred hHHhCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999998 99
Q ss_pred EEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 233 ~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
++++|+..++... .+.||+|++||||||+|+++++|+++|.++++++..++..|+++|.+|+++| ||||+|||||
T Consensus 155 ~~~~Da~~l~~~~-~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpGG~LvysT 229 (464)
T 3m6w_A 155 VTQAPPRALAEAF-GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL----GPGGVLVYST 229 (464)
T ss_dssp EECSCHHHHHHHH-CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTE----EEEEEEEEEE
T ss_pred EEECCHHHhhhhc-cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEEe
Confidence 9999998876433 3689999999999999999999999999999999999999999999999997 9999999999
Q ss_pred ccCCccccHHHHHHHHhcC-CCEEeecCCCCC-CCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 313 CSIMVTENEAVIDYALKKR-DVKLVPCGLDFG-RQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 313 CSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
||++++|||++|+++++++ +++++++....+ .+|...|... .+...+++|++||.+++||||+|+|+|.
T Consensus 230 Cs~~~eEne~vv~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~~P~~~~~dGfF~A~l~k~ 300 (464)
T 3m6w_A 230 CTFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEG--NPELLKTARLWPHRLEGEGHFLARFRKE 300 (464)
T ss_dssp SCCCGGGTHHHHHHHHHHCTTEEEECCCCSTTSEECCGGGTTT--CGGGGGSEEECTTTSSSSCEEEEEEEEC
T ss_pred ccCchhcCHHHHHHHHHHCCCcEEEecccccccccCccccccc--ccccCCeEEECCCCCCceeEEEEEEEEC
Confidence 9999999999999999877 799988754322 1222222211 1234568999999999999999999985
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-61 Score=492.97 Aligned_cols=299 Identities=34% Similarity=0.561 Sum_probs=259.7
Q ss_pred HhcChHHHHHHHHHhCCHH-HHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCC---
Q 016730 71 YYGYNEFLIGALVEMFPPV-ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ--- 146 (384)
Q Consensus 71 ~~~~p~wl~~~l~~~~~~~-~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~--- 146 (384)
.|++|.|++++|.+.||.+ +++++++++++++|+++|||++|++++++.+.|.+.|+.++++ +|++.++.+....
T Consensus 5 ~~~~P~~~~~~~~~~~g~~~~~~~~~~a~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~ 83 (479)
T 2frx_A 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDA 83 (479)
T ss_dssp --CCCHHHHHHHGGGCC----CHHHHHHHTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEE-TTEEEEEC--------
T ss_pred cccCcHHHHHHHHHHcCccHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeec-CCCCceEEEecCcccc
Confidence 5799999999999999976 5799999999999999999999999999999999999999998 8999988753221
Q ss_pred CCCCCCcccccceEEEeCCcCcchhhhcCCC--CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH
Q 016730 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 147 ~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~--~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
.+++.+|+|.+|.|++||++|++++.+|+++ +|++|||+|||||+||++|++++++.+.|+|+|+++.|++.+++|++
T Consensus 84 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~ 163 (479)
T 2frx_A 84 LPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANIS 163 (479)
T ss_dssp -CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHH
T ss_pred cCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 2678899999999999999999999999998 99999999999999999999999877999999999999999999999
Q ss_pred HcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC
Q 016730 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (384)
Q Consensus 225 r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp 304 (384)
++|+.++.++++|+..++... .+.||+|++||||||+|+++++|+++|.|+++++..++.+|+++|.+|+++| ||
T Consensus 164 r~g~~nv~~~~~D~~~~~~~~-~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kp 238 (479)
T 2frx_A 164 RCGISNVALTHFDGRVFGAAV-PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RP 238 (479)
T ss_dssp HHTCCSEEEECCCSTTHHHHS-TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHE----EE
T ss_pred HcCCCcEEEEeCCHHHhhhhc-cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhc----CC
Confidence 999999999999999875422 3689999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeccCCccccHHHHHHHHhcC-CC-EEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DV-KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 305 GG~lvYsTCSi~~~ENe~vv~~~l~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
||+|||||||++++|||++|+++++++ ++ +++++... .++.... ....+++|++||.+++||||+|+|+|
T Consensus 239 GG~LvysTcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~--~~~~~~~------~~~~g~~r~~P~~~~~dGfF~A~l~k 310 (479)
T 2frx_A 239 GGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDL--FPGANKA------LTEEGFLHVFPQIYDCEGFFVARLRK 310 (479)
T ss_dssp EEEEEEEESCCSSTTTHHHHHHHHHHSTTTEEECCCTTS--STTGGGG------BCTTSCEEECTTTTTSCCEEEEEEEE
T ss_pred CCEEEEecccCCcccCHHHHHHHHHHCCCceeccccccc--ccccccc------cccCCeEEECCCCCCcCccEEEEEEE
Confidence 999999999999999999999999876 44 55544211 1221100 01245689999999999999999998
Q ss_pred c
Q 016730 383 D 383 (384)
Q Consensus 383 ~ 383 (384)
.
T Consensus 311 ~ 311 (479)
T 2frx_A 311 T 311 (479)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=486.65 Aligned_cols=299 Identities=32% Similarity=0.478 Sum_probs=272.6
Q ss_pred hhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcC-CCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEec
Q 016730 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFE-KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (384)
Q Consensus 66 ~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~-~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~ 144 (384)
..+++.|++|.||+++|.+.|| +++++++++++ +++|+++|||++|++++++.+.|.+.|+.+.+. +|++.++.+.
T Consensus 149 ~~~~~~~~~P~w~~~~~~~~~g-~~~~~~~~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~- 225 (450)
T 2yxl_A 149 EELEWKYLAPSWLIERVKGILG-DETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRS-ERVPTILKIK- 225 (450)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHG-GGHHHHHHHHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEEC-SSCTTEEEEE-
T ss_pred hhhhhHhcCcHHHHHHHHHHhh-HHHHHHHHhcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceec-CccCceEEeC-
Confidence 3577889999999999999999 88999999999 999999999999999999999999999998887 8999998864
Q ss_pred CCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH
Q 016730 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 145 ~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
....+..++.|.+|++++||.+|++++.++++++|++|||+|||||+||+++++.+++.+.|+|+|+++.+++.+++|++
T Consensus 226 ~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~ 305 (450)
T 2yxl_A 226 GPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVK 305 (450)
T ss_dssp SCCCTTSCHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCcccCchhhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999777899999999999999999999
Q ss_pred HcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC
Q 016730 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (384)
Q Consensus 225 r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp 304 (384)
++|+.++.++++|+..++..+..+.||+|++||||||+|+++++|+++|.++++++..+..+|.++|.+++++| ||
T Consensus 306 ~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kp 381 (450)
T 2yxl_A 306 RMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV----KP 381 (450)
T ss_dssp HTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTE----EE
T ss_pred HcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 99999999999999887644434679999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 305 GG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
||+|||+|||++++|||++|..+++++ +++++++...+ ++ + ...+++|++||.+++||||+|+|+|+
T Consensus 382 GG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~~~~~--~~--------~--~~~~~~~~~P~~~~~dGff~a~l~k~ 449 (450)
T 2yxl_A 382 GGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPY--DP--------G--FLEGTMRAWPHRHSTIGFFYALLEKS 449 (450)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECCCCSSS--EE--------C--SSTTCEEECHHHHSSCCEEEEEEECC
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeeccccc--cc--------c--cCCCeEEECCCCCCCCceEEEEEEEC
Confidence 999999999999999999999988876 79988764322 11 1 13467999999999999999999985
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-60 Score=480.59 Aligned_cols=321 Identities=29% Similarity=0.430 Sum_probs=278.6
Q ss_pred HHHHHHHHHHhcccccccC----------CCHHHHHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeE
Q 016730 36 RIKEIVRVLSNFKDLSQKG----------TSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPIC 105 (384)
Q Consensus 36 ri~~~v~~~~~~~~~~~~~----------r~~~~~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~ 105 (384)
-|+|+|++.+.+...+..+ |..+++.......++ +|++|.||+++|.+.|| ++++++++++++++|++
T Consensus 98 ~ineaVelak~~~~~~~~~fvN~vL~~~~r~~~~~~~~~~~~~~-~~~~p~w~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 175 (429)
T 1sqg_A 98 ALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDA-RYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMW 175 (429)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTSGG-GGCSCHHHHHHHHHHCT-TTHHHHHHHHTSCCCEE
T ss_pred hhHHHHHHHHHhccccchhhHHHHHHHHHHhhhcccccchhhhh-hhcCcHHHHHHHHHHhh-HHHHHHHHhCCCCCCeE
Confidence 4788999888876544321 111222211122244 79999999999999999 78999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEe
Q 016730 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185 (384)
Q Consensus 106 ~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~ 185 (384)
+|||++|++++++.+.|.+.|+...+. +|++.++.+ ..+.++..+|+|..|.+++||.+|++++.++++++|++|||+
T Consensus 176 ~Rvn~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 253 (429)
T 1sqg_A 176 LRINRTHHSRDSWLALLDEAGMKGFPH-ADYPDAVRL-ETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDL 253 (429)
T ss_dssp EEECTTTCCHHHHHHHHHHTTCCEECC-TTCTTEEEE-SSCCCGGGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCEEEE-CCCCCcccChHHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEE
Confidence 999999999999999999999999888 899999875 445678899999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC
Q 016730 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (384)
Q Consensus 186 cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~ 265 (384)
|||||+||+++++.+++ +.|+|+|+++.+++.+++|++++|+. +.++++|+..++..+..+.||+|++||||||+|++
T Consensus 254 gaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 254 CAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVI 331 (429)
T ss_dssp SCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGT
T ss_pred CCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchhhcccCCCCEEEEeCCCCccccc
Confidence 99999999999999876 89999999999999999999999985 68889999987654444689999999999999999
Q ss_pred CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCC
Q 016730 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (384)
Q Consensus 266 ~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~ 344 (384)
+++|+++|.+++.++..++..|.++|.+++++| ||||+|||+|||++++|||++|..+++++ ++++++. +
T Consensus 332 ~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L----kpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~~----~- 402 (429)
T 1sqg_A 332 RRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCET----G- 402 (429)
T ss_dssp TTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE----EEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECSS----B-
T ss_pred CCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeCC----C-
Confidence 999999999999999999999999999999996 99999999999999999999999888765 7888761 1
Q ss_pred CCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
. ....++|++||.+++||||+|+|+|.
T Consensus 403 --~----------~~~~~~~~~P~~~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 403 --T----------PEQPGKQNLPGAEEGDGFFYAKLIKK 429 (429)
T ss_dssp --C----------SSSBSEEECCCTTSCCSEEEEEEEC-
T ss_pred --C----------CCCCeEEECCCCCCCCceEEEEEEEC
Confidence 0 02345899999999999999999984
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-59 Score=452.16 Aligned_cols=272 Identities=32% Similarity=0.431 Sum_probs=219.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccc------------------cccEEEecCCCCCCCCcccccceE
Q 016730 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS------------------KVGLVVYDSQVPIGATPEYMAGFY 160 (384)
Q Consensus 99 ~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~G~~ 160 (384)
..++|+++|||++|++++++.+.|++.|+.+++. +|+ +.++.+ ....++..+|+|++|.|
T Consensus 7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~~~~~~~~~~~~~G~~ 84 (309)
T 2b9e_A 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGR-ASSLDDLRALKGKHFLLDPLMPELLVF-PAQTDLHEHPLYRAGHL 84 (309)
T ss_dssp --CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEE-CSSHHHHHTCCTTEEEECSSSTTEEEE-CTTCCCTTSHHHHTTSE
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeec-cccccccccccccccccccCCCceEEe-CCCCCcccChHHHCCeE
Confidence 4789999999999999999999999999988775 443 344443 44457899999999999
Q ss_pred EEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 161 MLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 161 ~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
++||++|++++.+|++++|++|||+|||||+||+++++++++.+.|+|+|+++.|++.+++|++++|+.|+.++++|+..
T Consensus 85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~ 164 (309)
T 2b9e_A 85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 164 (309)
T ss_dssp EECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence 99999999999999999999999999999999999999998779999999999999999999999999999999999887
Q ss_pred cccccC-CCCCCEEEEcCCCCCCCcCCCCchhhccC--CHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 241 LPKVLG-LNTVDRVLLDAPCSGTGVISKDESVKTSK--SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 241 ~~~~~~-~~~fD~VllDaPCSg~G~~~r~p~~~~~~--~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
+..... ...||+||+||||||+|+++++||++|.+ +++++..++.+|++||.+|++++ + ||+|||||||+++
T Consensus 165 ~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 165 VSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP----S-LQRLVYSTCSLCQ 239 (309)
T ss_dssp SCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCT----T-CCEEEEEESCCCG
T ss_pred cCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcc----C-CCEEEEECCCCCh
Confidence 643211 14799999999999999999999998854 67899999999999999999985 6 9999999999999
Q ss_pred cccHHHHHHHHhcC-C-CEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 318 TENEAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 318 ~ENe~vv~~~l~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+|||++|+++|+++ + ++++++...+...|... .+...+++|++||.+++||||+|+|+|.
T Consensus 240 ~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~~P~~~~~dGfF~A~l~k~ 301 (309)
T 2b9e_A 240 EENEDVVRDALQQNPGAFRLAPALPAWPHRGLST------FPGAEHCLRASPETTLSSGFFVAVIERV 301 (309)
T ss_dssp GGTHHHHHHHHTTSTTTEEECCCCTTCCCBCCSS------STTGGGSEEECHHHHSSCSEEEEEEEEC
T ss_pred HHhHHHHHHHHHhCCCcEEEeccccccccccccc------cCCCCCeEEECCCCCCCCCeEEEEEEEC
Confidence 99999999999876 6 88887643332222211 1224578999999999999999999985
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-58 Score=451.41 Aligned_cols=294 Identities=24% Similarity=0.308 Sum_probs=232.7
Q ss_pred HHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc-----------c--------CCC-cc-cccc
Q 016730 81 ALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL-----------D--------PLS-KW-SKVG 139 (384)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~-----------~--------~~~-~~-~~~~ 139 (384)
++...|| ++|..+.+++.++++..+|||+.. ..+++.+.|+..|..- + |.. .| .+..
T Consensus 26 ~Y~~~~G-~~W~~~r~aL~~~~~~~a~vN~f~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 103 (359)
T 4fzv_A 26 TYSVQFG-DLWPSIRVSLLSEQKYGALVNNFA-AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPN 103 (359)
T ss_dssp HHHHHHG-GGHHHHHHHHTSCCCCEEEECTTS-CHHHHHHHHHHTTCEEHHHHHHHTTTCCC-----CCSSCHHHHSCSS
T ss_pred HHHHHhh-hhhHHHHHHHcCcchhEEEeccCC-ChHHHHHHHHhccCccchhhhhcccccccccccccCCCcccccCCcc
Confidence 3346778 689999999999999999999985 5788888988877520 0 000 11 1111
Q ss_pred E-EEecCCCCCCCCcccccce-----EEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCH
Q 016730 140 L-VVYDSQVPIGATPEYMAGF-----YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213 (384)
Q Consensus 140 ~-~~~~~~~~~~~~~~~~~G~-----~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~ 213 (384)
+ .+.....++..+|.|..|. |++||++||+++.+|+++||++||||||||||||+||++++.+ +.|+|+|+++
T Consensus 104 l~~~~~~~g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~ 182 (359)
T 4fzv_A 104 LRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSP 182 (359)
T ss_dssp CCEEECCTTCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCH
T ss_pred ceEEecCCCChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCH
Confidence 1 1122334678888887664 8889999999999999999999999999999999999998754 7899999999
Q ss_pred HHHHHHHHHHHHcCC------ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCC--CcCCCCchhhccCCHHHHHHHHH
Q 016730 214 SRLKSLTANLHRMGV------TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT--GVISKDESVKTSKSLEDIQKCSY 285 (384)
Q Consensus 214 ~rl~~l~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~--G~~~r~p~~~~~~~~~~i~~l~~ 285 (384)
.|++.+++|++++|+ .++.+.+.|++.++... .+.||+||+||||||+ |+++++|+++|.++++++..++.
T Consensus 183 ~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~-~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~ 261 (359)
T 4fzv_A 183 SRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE-GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPV 261 (359)
T ss_dssp HHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS-TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc-cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHH
Confidence 999999999999987 36889999998876543 4789999999999997 88999999999999999999999
Q ss_pred HHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCCCCcc--cccccccCCCcCCe
Q 016730 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFV--RFREHRFHPSLEKT 362 (384)
Q Consensus 286 ~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 362 (384)
+|++||.+|+++| ||||+|||||||++++|||+||++||+++ ++..+++... +.+.+. ......|.+....+
T Consensus 262 lQ~~iL~~a~~~l----kpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~g 336 (359)
T 4fzv_A 262 LQVQLLAAGLLAT----KPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVE-DLTHFRRVFMDTFCFFSSCQVG 336 (359)
T ss_dssp HHHHHHHHHHHTE----EEEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEEC-CCHHHHHHHTTTCEECTTCSSS
T ss_pred HHHHHHHHHHhcC----CCCcEEEEEeCCCchhhCHHHHHHHHHhCCCCcccccccc-cccccccccccccccCccccce
Confidence 9999999999997 99999999999999999999999999864 3322222110 000000 01122345566788
Q ss_pred eEEcCCCC-CCCceeEEEEEec
Q 016730 363 RRFYPHVH-NMDGFFVAKVYLD 383 (384)
Q Consensus 363 ~r~~P~~~-~~dGFF~A~l~~~ 383 (384)
+|++||.+ ++||||+|+|+|.
T Consensus 337 ~r~~P~~~~~~gGFFiA~L~Kv 358 (359)
T 4fzv_A 337 ELVIPNLMANFGPMYFCKMRRL 358 (359)
T ss_dssp EEEECBTTBCCCCEEEEEEEEC
T ss_pred EEECCCCCCCCCCEEEEEEEEC
Confidence 99999965 6788999999984
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-52 Score=394.97 Aligned_cols=270 Identities=42% Similarity=0.614 Sum_probs=219.8
Q ss_pred HHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhc
Q 016730 95 IESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174 (384)
Q Consensus 95 ~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L 174 (384)
+.++++++|+++|||++|++++++.+.|.+.|+.+++ +|++.++.+.+.+.++..+|.|.+|+|++||.+|++++.++
T Consensus 2 m~~~~~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l 79 (274)
T 3ajd_A 2 MIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK--TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVL 79 (274)
T ss_dssp -------CCEEEEECTTTCCHHHHHHHHHTTTCEEEE--CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHH
T ss_pred hhhhCCCCCeEEEEeCCCCCHHHHHHHHHHCCCeecC--CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHh
Confidence 4566789999999999999999999999999998887 78999988644556789999999999999999999999999
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDR 252 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~ 252 (384)
++++|++|||+|||||++|.++++++++.+.|+|+|+++.+++.+++|++++|+.++.++++|+..++..+ ..+.||+
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDK 159 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCE
Confidence 99999999999999999999999998777899999999999999999999999999999999998765321 1368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc-C
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK-R 331 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~-~ 331 (384)
|++||||||+|+++++| .++.+++..+...|.++|.+++++| ||||+|+|+|||++++|||++|++++++ .
T Consensus 160 Vl~d~Pcs~~g~~~~~p----~~~~~~~~~~~~~~~~~l~~~~~~L----kpgG~lv~stcs~~~~ene~~v~~~l~~~~ 231 (274)
T 3ajd_A 160 ILLDAPCSGNIIKDKNR----NVSEEDIKYCSLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRN 231 (274)
T ss_dssp EEEEECCC----------------HHHHTGGGTCHHHHHHHHHHHE----EEEEEEEEEESCCCTTSSHHHHHHHHHHCS
T ss_pred EEEcCCCCCCcccccCC----CCCHHHHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCCChHHhHHHHHHHHHhCC
Confidence 99999999999999998 6788889899999999999999996 9999999999999999999999999865 5
Q ss_pred CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+++++++... ..+|+..|.. ...+++|++||.++ ||+|+|+|.
T Consensus 232 ~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~P~~~~---ff~a~l~k~ 274 (274)
T 3ajd_A 232 DVELIIIKAN-EFKGINIKEG-----YIKGTLRVFPPNEP---FFIAKLRKI 274 (274)
T ss_dssp SEEEECCCST-TCTTSCEEEC-----SSTTCEEECTTSCC---EEEEEEEEC
T ss_pred CcEEecCccc-cccCcccccc-----cCCCeEEECCCCCC---EEEEEEEEC
Confidence 7999876532 1233333221 23578999999764 999999984
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=180.34 Aligned_cols=163 Identities=20% Similarity=0.233 Sum_probs=130.6
Q ss_pred CCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 151 ~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
-..++++|.|..|+.++.++...+ ++|++|||+|||+|++|++++.. + ..|+|+|+|+.+++.+++|++.+|+.+
T Consensus 189 ~~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~--g-a~V~avDis~~al~~a~~n~~~ng~~~ 263 (393)
T 4dmg_A 189 LALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK--G-AYALAVDKDLEALGVLDQAALRLGLRV 263 (393)
T ss_dssp TTTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred chhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 356788999999999887766554 46999999999999999999885 3 349999999999999999999999974
Q ss_pred EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 231 v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
.+.++|+..+..... +.||+|++||||- ..+..++......+.+++..+.++| ||||+|+|
T Consensus 264 -~~~~~D~~~~l~~~~-~~fD~Ii~dpP~f-------------~~~~~~~~~~~~~~~~ll~~a~~~L----kpGG~Lv~ 324 (393)
T 4dmg_A 264 -DIRHGEALPTLRGLE-GPFHHVLLDPPTL-------------VKRPEELPAMKRHLVDLVREALRLL----AEEGFLWL 324 (393)
T ss_dssp -EEEESCHHHHHHTCC-CCEEEEEECCCCC-------------CSSGGGHHHHHHHHHHHHHHHHHTE----EEEEEEEE
T ss_pred -cEEEccHHHHHHHhc-CCCCEEEECCCcC-------------CCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEE
Confidence 455888877543333 3499999999972 2334567778888999999999996 99999999
Q ss_pred EeccCCccccH--HHHHHHHhcC--CCEEee
Q 016730 311 STCSIMVTENE--AVIDYALKKR--DVKLVP 337 (384)
Q Consensus 311 sTCSi~~~ENe--~vv~~~l~~~--~~~l~~ 337 (384)
+|||.+..+++ ++|...+... .++++.
T Consensus 325 ~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~ 355 (393)
T 4dmg_A 325 SSCSYHLRLEDLLEVARRAAADLGRRLRVHR 355 (393)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 99999998887 6777665543 455543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=160.78 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=104.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~V 253 (384)
.+++|++|||+|||||++|.++++++++.|.|+|+|+++.+++.+.+..++. .|+.++.+|++..... ...+.||+|
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I 150 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVL 150 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEE
Confidence 4789999999999999999999999988899999999999987776665543 5899999999875421 113689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHH-chhccCCCCcEEEEE---ec---cCCccccHHHHHH
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYS---TC---SIMVTENEAVIDY 326 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~-~L~~~lkpGG~lvYs---TC---Si~~~ENe~vv~~ 326 (384)
++|.|- | .|.++|...+. +| ||||+|+++ +| ++.++||.+.+..
T Consensus 151 ~~d~a~---------~----------------~~~~il~~~~~~~L----kpGG~lvisik~~~~d~t~~~~e~~~~~~~ 201 (232)
T 3id6_C 151 YVDIAQ---------P----------------DQTDIAIYNAKFFL----KVNGDMLLVIKARSIDVTKDPKEIYKTEVE 201 (232)
T ss_dssp EECCCC---------T----------------THHHHHHHHHHHHE----EEEEEEEEEEC-------CCSSSSTTHHHH
T ss_pred EecCCC---------h----------------hHHHHHHHHHHHhC----CCCeEEEEEEccCCcccCCCHHHHHHHHHH
Confidence 999871 1 24455554444 64 999999976 89 9999999988888
Q ss_pred HHhcCCCEEeec
Q 016730 327 ALKKRDVKLVPC 338 (384)
Q Consensus 327 ~l~~~~~~l~~~ 338 (384)
+|+.++++++..
T Consensus 202 ~L~~~gf~~~~~ 213 (232)
T 3id6_C 202 KLENSNFETIQI 213 (232)
T ss_dssp HHHHTTEEEEEE
T ss_pred HHHHCCCEEEEE
Confidence 888888888764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-18 Score=171.12 Aligned_cols=163 Identities=23% Similarity=0.275 Sum_probs=129.1
Q ss_pred CCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 151 ~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
...++.+|+|..|...+.+.+.+ +|++|||+|||+|+.+.+++.. ...|+++|+++.+++.+++|++.+|+.+
T Consensus 186 ~~~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~ 258 (382)
T 1wxx_A 186 LRAGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN 258 (382)
T ss_dssp CSTTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred chhcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 34567889888887765554443 7889999999999999999987 3689999999999999999999999988
Q ss_pred EEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 231 TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 231 v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
+.++++|+..+...+ ...+||+|++|||+.+. +...+......+.+++..+.++| +|||+|
T Consensus 259 ~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~-------------~~~~~~~~~~~~~~~l~~~~~~L----kpgG~l 321 (382)
T 1wxx_A 259 VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAK-------------GKKDVERAYRAYKEVNLRAIKLL----KEGGIL 321 (382)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCC-------------STTSHHHHHHHHHHHHHHHHHTE----EEEEEE
T ss_pred ceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCC-------------ChhHHHHHHHHHHHHHHHHHHhc----CCCCEE
Confidence 999999987753321 13689999999997443 23345667778889999999996 999999
Q ss_pred EEEeccCCcccc--HHHHHHHHhcC--CCEEee
Q 016730 309 VYSTCSIMVTEN--EAVIDYALKKR--DVKLVP 337 (384)
Q Consensus 309 vYsTCSi~~~EN--e~vv~~~l~~~--~~~l~~ 337 (384)
+++|||.+..++ ++.+...+... .++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 354 (382)
T 1wxx_A 322 ATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 354 (382)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999988775 56676444444 456554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=164.82 Aligned_cols=159 Identities=21% Similarity=0.196 Sum_probs=124.5
Q ss_pred cccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eE
Q 016730 153 PEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NT 231 (384)
Q Consensus 153 ~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v 231 (384)
.++++|+|..|.....++..++ ++|++|||+|||+|+.+.+++.. +.+.|+++|+++.+++.+++|++.+|+. ++
T Consensus 194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v 269 (396)
T 2as0_A 194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 269 (396)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 4577788877766655555443 47899999999999999999875 3468999999999999999999999997 89
Q ss_pred EEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE
Q 016730 232 IVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (384)
Q Consensus 232 ~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv 309 (384)
.++++|+..+...+ ...+||+|++|||+.+. +...+......+.+++..++++| +|||+|+
T Consensus 270 ~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~-------------~~~~~~~~~~~~~~~l~~~~~~L----kpgG~lv 332 (396)
T 2as0_A 270 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQ-------------HEKDLKAGLRAYFNVNFAGLNLV----KDGGILV 332 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCS-------------SGGGHHHHHHHHHHHHHHHHTTE----EEEEEEE
T ss_pred eEEECCHHHHHHHHHhhCCCCCEEEECCCCCCC-------------CHHHHHHHHHHHHHHHHHHHHhc----CCCcEEE
Confidence 99999987653221 13689999999996432 33455666777888999999986 9999999
Q ss_pred EEeccCCccc--cHHHHHHHHhcCC
Q 016730 310 YSTCSIMVTE--NEAVIDYALKKRD 332 (384)
Q Consensus 310 YsTCSi~~~E--Ne~vv~~~l~~~~ 332 (384)
|+||+.+..+ .++++.......+
T Consensus 333 ~~~~~~~~~~~~~~~~v~~~~~~~~ 357 (396)
T 2as0_A 333 TCSCSQHVDLQMFKDMIIAAGAKAG 357 (396)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC
Confidence 9999987655 4666665555444
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=148.79 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=115.4
Q ss_pred cceEEEeCCc-------CcchhhhcCCC-CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 016730 157 AGFYMLQSAS-------SFLPVMALAPQ-EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (384)
Q Consensus 157 ~G~~~~Qd~s-------s~l~~~~L~~~-~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~ 228 (384)
.+..++|+.. +.+.+.++.++ ++.+|||+|||+|..+..+++... +.|+|+|+++.+++.+++|+..+|+
T Consensus 20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~ 97 (259)
T 3lpm_A 20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQL 97 (259)
T ss_dssp TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCC
Confidence 4556678776 56667777788 899999999999999999888743 4899999999999999999999999
Q ss_pred c-eEEEEecCCCCcccccCCCCCCEEEEcCCCCCC---CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC
Q 016730 229 T-NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (384)
Q Consensus 229 ~-~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~---G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp 304 (384)
. ++.++++|+..+...+..++||.|++||||... |....++.....+ .........++..+.++| ||
T Consensus 98 ~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~-----~~~~~~~~~~l~~~~~~L----kp 168 (259)
T 3lpm_A 98 EDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIAR-----HEVMCTLEDTIRVAASLL----KQ 168 (259)
T ss_dssp TTTEEEECSCGGGGGGTSCTTCEEEEEECCCC----------------------------HHHHHHHHHHHHHE----EE
T ss_pred cccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhh-----ccccCCHHHHHHHHHHHc----cC
Confidence 7 599999999887654445789999999999766 4433222111111 011122346888888886 99
Q ss_pred CcEEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 305 GG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
||+++++. +.+....+...+++.+++...
T Consensus 169 gG~l~~~~----~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 169 GGKANFVH----RPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp EEEEEEEE----CTTTHHHHHHHHHHTTEEEEE
T ss_pred CcEEEEEE----cHHHHHHHHHHHHHCCCceEE
Confidence 99999843 334444455556666665543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=157.85 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=109.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..++...+ ...|+|+|+|+.+++.+++|++++|+.++.+.++|..... ..++||.|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---~~~~fD~Iv~n 183 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---AGQQFAMIVSN 183 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---TTCCEEEEEEC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---ccCCccEEEEC
Confidence 5678999999999999999998775 3799999999999999999999999988999999987642 23689999999
Q ss_pred CCCCCCC-------cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 257 APCSGTG-------VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 257 aPCSg~G-------~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
|||.+.+ ++...|...+..... .....++++..+.++| ||||++++..+. .+.+.+..+++
T Consensus 184 pPy~~~~~~~l~~~v~~~~p~~al~~~~~----g~~~~~~~l~~~~~~L----kpgG~l~~~~~~----~~~~~~~~~l~ 251 (276)
T 2b3t_A 184 PPYIDEQDPHLQQGDVRFEPLTALVAADS----GMADIVHIIEQSRNAL----VSGGFLLLEHGW----QQGEAVRQAFI 251 (276)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHH----HTHHHHHHHHHHGGGE----EEEEEEEEECCS----SCHHHHHHHHH
T ss_pred CCCCCccccccChhhhhcCcHHHHcCCCc----HHHHHHHHHHHHHHhc----CCCCEEEEEECc----hHHHHHHHHHH
Confidence 9998874 444555555442222 2234577889999886 999999997653 34445566666
Q ss_pred cCCC
Q 016730 330 KRDV 333 (384)
Q Consensus 330 ~~~~ 333 (384)
+.++
T Consensus 252 ~~Gf 255 (276)
T 2b3t_A 252 LAGY 255 (276)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 6554
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-18 Score=169.04 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=126.6
Q ss_pred CCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 016730 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~ 228 (384)
+...+++++|+|..|.....+++.+ .+|.+|||+|||+|+++.+++.. +.+.|+|+|+++.+++.+++|++.+|+
T Consensus 194 v~~~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl 268 (396)
T 3c0k_A 194 VDIQHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL 268 (396)
T ss_dssp ECTTTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EeccccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3445678889998888776665554 57899999999999999999885 246899999999999999999999999
Q ss_pred -c-eEEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC
Q 016730 229 -T-NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (384)
Q Consensus 229 -~-~v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp 304 (384)
. ++.++.+|+..+...+ .+.+||+|++|||+.+.+-- .+......+.+++..+++.| +|
T Consensus 269 ~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~-------------~~~~~~~~~~~~l~~~~~~L----kp 331 (396)
T 3c0k_A 269 DLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKS-------------QLMGACRGYKDINMLAIQLL----NE 331 (396)
T ss_dssp CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSS-------------SSSCCCTHHHHHHHHHHHTE----EE
T ss_pred CccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChh-------------HHHHHHHHHHHHHHHHHHhc----CC
Confidence 7 8999999987753221 13689999999997554210 00111224567888999986 99
Q ss_pred CcEEEEEeccCCcc--ccHHHHHHHHhcC--CCEEee
Q 016730 305 GGYIVYSTCSIMVT--ENEAVIDYALKKR--DVKLVP 337 (384)
Q Consensus 305 GG~lvYsTCSi~~~--ENe~vv~~~l~~~--~~~l~~ 337 (384)
||++++++|+.+.. ++++++...+.+. .++++.
T Consensus 332 gG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 368 (396)
T 3c0k_A 332 GGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 99999999998776 6678887555444 455543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-18 Score=167.46 Aligned_cols=169 Identities=15% Similarity=0.051 Sum_probs=119.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc---------------CCceEEEEecCCCCcc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM---------------GVTNTIVCNYDGNELP 242 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~---------------g~~~v~~~~~D~~~~~ 242 (384)
+|.+|||+|||+|.+++.++..+++ ..|+++|+++.+++.+++|++++ |+.++.++++|+..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~-~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 6899999999999999999998754 57999999999999999999999 8888999999998764
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHH
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~ 322 (384)
... .+.||+|++||||+. .++|+.|++.+ |+|| ++|.||+-....+..
T Consensus 126 ~~~-~~~fD~I~lDP~~~~--------------------------~~~l~~a~~~l----k~gG-~l~vt~td~~~l~~~ 173 (378)
T 2dul_A 126 AER-HRYFHFIDLDPFGSP--------------------------MEFLDTALRSA----KRRG-ILGVTATDGAPLCGA 173 (378)
T ss_dssp HHS-TTCEEEEEECCSSCC--------------------------HHHHHHHHHHE----EEEE-EEEEEECCHHHHTTS
T ss_pred Hhc-cCCCCEEEeCCCCCH--------------------------HHHHHHHHHhc----CCCC-EEEEEeecchhhccc
Confidence 433 257999999999752 25788888886 9999 789999866544433
Q ss_pred HHHHHHhcCCCEEeecCCCCCCCCcccc-c-ccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 323 VIDYALKKRDVKLVPCGLDFGRQGFVRF-R-EHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 323 vv~~~l~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
.....+++++.......... ..+.... . ..+ .....++++.|.....+|||++++.|
T Consensus 174 ~~~~~~~~yg~~p~~~~~~~-e~~~ri~l~~~~~--~~~~~g~~i~P~~~~~~~~y~rv~vr 232 (378)
T 2dul_A 174 HPRACLRKYLAVPLRGELCH-EVGTRILVGVIAR--YAAKYDLGIDVILAYYKDHYFRAFVK 232 (378)
T ss_dssp SHHHHHHHHSSBCCCSTTHH-HHHHHHHHHHHHH--HHHTTTEEEEEEEEEEETTEEEEEEE
T ss_pred cHHHHHHHccCCCccccccc-chhHHHHHHHHHH--hcCcCCcEEEEEEEEecCCEEEEEEE
Confidence 44455555543322111000 0000000 0 000 00123478888777778999999976
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-18 Score=163.99 Aligned_cols=204 Identities=14% Similarity=0.136 Sum_probs=125.9
Q ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHH-HHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhh
Q 016730 94 LIESFEKPRPICLRTNTLKTRRRDLA-DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (384)
Q Consensus 94 ~~~~~~~~~p~~~RvN~~k~~~~~~~-~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~ 172 (384)
++.++++.+|++.|+|+.+.+.+.+. +.|...++.. .. ......+... .+......+.+..+...+++..+.+++.
T Consensus 28 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~g~~~g~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (275)
T 1yb2_A 28 ILVSEDEYGKFDESTNSILVKGKMHHLGISRVIEPGD-EL-IVSGKSFIVS-DFSPMYFGRVIRRNTQIISEIDASYIIM 104 (275)
T ss_dssp EEECSSCCEEEETTTTEEEC-CCEEECC-CCCCCTTC-EE-EETTEEEEEE-CCCGGGHHHHC-----------------
T ss_pred EEEecCCCCceeccccceeccCCccchhheeCCCCCc-EE-EECCeEEEEe-CCCHHHHHhhccccccccChhhHHHHHH
Confidence 45677888999999996665432211 1121111100 00 0001112211 1222223345556677778877778888
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCcccccCCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+++++|.+|||+|||+|..+.++++.+.+.+.|+++|+++.+++.+++++++. |..++.+..+|+... +..+.||
T Consensus 105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~---~~~~~fD 181 (275)
T 1yb2_A 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---ISDQMYD 181 (275)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---CCSCCEE
T ss_pred HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc---CcCCCcc
Confidence 889999999999999999999999998655579999999999999999999999 988899999998763 2336899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
+|++|+| +| .++|..+.+.| ||||++++++|+.. ..+.+...++..
T Consensus 182 ~Vi~~~~---------~~------------------~~~l~~~~~~L----kpgG~l~i~~~~~~---~~~~~~~~l~~~ 227 (275)
T 1yb2_A 182 AVIADIP---------DP------------------WNHVQKIASMM----KPGSVATFYLPNFD---QSEKTVLSLSAS 227 (275)
T ss_dssp EEEECCS---------CG------------------GGSHHHHHHTE----EEEEEEEEEESSHH---HHHHHHHHSGGG
T ss_pred EEEEcCc---------CH------------------HHHHHHHHHHc----CCCCEEEEEeCCHH---HHHHHHHHHHHC
Confidence 9999887 11 14678888886 99999999998762 323334445566
Q ss_pred CCEEee
Q 016730 332 DVKLVP 337 (384)
Q Consensus 332 ~~~l~~ 337 (384)
+++.+.
T Consensus 228 Gf~~~~ 233 (275)
T 1yb2_A 228 GMHHLE 233 (275)
T ss_dssp TEEEEE
T ss_pred CCeEEE
Confidence 766554
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=143.24 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHcCCcccCC----------CccccccEEEecCCCCCCCCcccccceEEEeCCcCc-chhhhcC--CCC
Q 016730 112 KTRRRDLADVLINRGVNLDPL----------SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSF-LPVMALA--PQE 178 (384)
Q Consensus 112 k~~~~~~~~~L~~~g~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~-l~~~~L~--~~~ 178 (384)
..+++++.+.|.+.|+...+. ..|.+.+ .....+.+..+...++++... ....++. +++
T Consensus 6 ~~~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~--------~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~ 77 (226)
T 1i1n_A 6 GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--------PYMDSPQSIGFQATISAPHMHAYALELLFDQLHE 77 (226)
T ss_dssp CSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSC--------TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCT
T ss_pred CchHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHcCCCc--------cCCCCccccCCCceecCHHHHHHHHHHHHhhCCC
Confidence 467889999999999752220 0121111 112223333333445554421 1223343 778
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcccccCCCCCCEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+.+|||+|||+|.++.++++.++..+.|+++|+++.+++.+++++.+.| ..++.+...|+...... .+.||+|
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~i 155 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE--EAPYDAI 155 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG--GCCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc--CCCcCEE
Confidence 9999999999999999999988655799999999999999999999976 46789999998754322 3689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHH
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~v 323 (384)
+++++|.. ++..+.+.| ||||++++++|+...+++..+
T Consensus 156 ~~~~~~~~----------------------------~~~~~~~~L----kpgG~lv~~~~~~~~~~~~~~ 193 (226)
T 1i1n_A 156 HVGAAAPV----------------------------VPQALIDQL----KPGGRLILPVGPAGGNQMLEQ 193 (226)
T ss_dssp EECSBBSS----------------------------CCHHHHHTE----EEEEEEEEEESCTTSCEEEEE
T ss_pred EECCchHH----------------------------HHHHHHHhc----CCCcEEEEEEecCCCceEEEE
Confidence 99998721 234556665 999999999999877666543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-17 Score=177.41 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=129.4
Q ss_pred cccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHH
Q 016730 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKAS 214 (384)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~ 214 (384)
+.+.|+.+. +.-.+.+++|.|..|+....++.... +|.+|||+|||+|+.+++++.. +..+|+++|+|+.
T Consensus 504 v~E~g~~~~-----v~~~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~ 573 (703)
T 3v97_A 504 VTEYNAHLW-----VNLTDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRT 573 (703)
T ss_dssp EEETTEEEE-----ECSSSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHH
T ss_pred EEECCEEEE-----EeccccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHH
Confidence 345566542 22346788999999998877766543 6899999999999999988873 4467999999999
Q ss_pred HHHHHHHHHHHcCCc--eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHH
Q 016730 215 RLKSLTANLHRMGVT--NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292 (384)
Q Consensus 215 rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~ 292 (384)
+++.+++|++.+|+. ++.++++|+..+.... .++||+|++||||.+.+-- ..++....+.+.+++.
T Consensus 574 al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~-~~~fD~Ii~DPP~f~~~~~-----------~~~~~~~~~~~~~ll~ 641 (703)
T 3v97_A 574 YLEWAERNLRLNGLTGRAHRLIQADCLAWLREA-NEQFDLIFIDPPTFSNSKR-----------MEDAFDVQRDHLALMK 641 (703)
T ss_dssp HHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC-CCCEEEEEECCCSBC------------------CCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceEEEecCHHHHHHhc-CCCccEEEECCccccCCcc-----------chhHHHHHHHHHHHHH
Confidence 999999999999997 7999999998753322 3689999999998554310 0111234467788999
Q ss_pred HHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 293 ~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
.+.++| +|||+|++|+|+-....+++. +++.++++..+
T Consensus 642 ~a~~~L----kpgG~L~~s~~~~~~~~~~~~----l~~~g~~~~~i 679 (703)
T 3v97_A 642 DLKRLL----RAGGTIMFSNNKRGFRMDLDG----LAKLGLKAQEI 679 (703)
T ss_dssp HHHHHE----EEEEEEEEEECCTTCCCCHHH----HHHTTEEEEEC
T ss_pred HHHHhc----CCCcEEEEEECCcccccCHHH----HHHcCCceeee
Confidence 999986 999999999999666666543 34466665544
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=145.05 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=119.6
Q ss_pred EeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCC
Q 016730 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNE 240 (384)
Q Consensus 162 ~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~ 240 (384)
+++..+.+...++...++.+|||+|||+|..|.++++.++..++|+++|+++.+++.+++|+++.|+. ++.++.+|+.+
T Consensus 42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (221)
T 3u81_A 42 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121 (221)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence 34444555566666667889999999999999999998766689999999999999999999999996 49999999866
Q ss_pred cccccC----CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 241 LPKVLG----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 241 ~~~~~~----~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
...... .++||.|++|+++.. . ....+++..+ ++ |||||+|++.+|..
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~------------------~----~~~~~~~~~~-~~----LkpgG~lv~~~~~~- 173 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDR------------------Y----LPDTLLLEKC-GL----LRKGTVLLADNVIV- 173 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGG------------------H----HHHHHHHHHT-TC----CCTTCEEEESCCCC-
T ss_pred HHHHHHHhcCCCceEEEEEcCCccc------------------c----hHHHHHHHhc-cc----cCCCeEEEEeCCCC-
Confidence 432222 158999999976311 0 1122345544 55 59999999998875
Q ss_pred ccccHHHHHHHHhcCCCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 317 VTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 317 ~~ENe~vv~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
.......+++.++..++...+ ...+|.....|||++++++.
T Consensus 174 -~~~~~~~~~l~~~~~~~~~~~------------------------~~~~~~~~~~dG~~~~~~~g 214 (221)
T 3u81_A 174 -PGTPDFLAYVRGSSSFECTHY------------------------SSYLEYMKVVDGLEKAIYQG 214 (221)
T ss_dssp -CCCHHHHHHHHHCTTEEEEEE------------------------EEEETTTTEEEEEEEEEECC
T ss_pred -cchHHHHHHHhhCCCceEEEc------------------------ccccccCCCCCceEEEEEeC
Confidence 234556666655555443221 12345556789999998863
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-16 Score=144.37 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=96.1
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCc-ccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL-PKV 244 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~-~~~ 244 (384)
+.+...++...++.+|||+|||+|..|.++++.+++.+.|+++|+++.+++.+++++++.|+. ++.+..+|+... +..
T Consensus 52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~ 131 (248)
T 3tfw_A 52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL 131 (248)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC
T ss_pred HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc
Confidence 344444555667899999999999999999998875689999999999999999999999997 699999998764 322
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
...++||+|++|+++.. ....+..+.++| ||||+|++.++...
T Consensus 132 ~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~~~~L----kpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 132 GECPAFDLIFIDADKPN-------------------------NPHYLRWALRYS----RPGTLIIGDNVVRD 174 (248)
T ss_dssp CSCCCCSEEEECSCGGG-------------------------HHHHHHHHHHTC----CTTCEEEEECCSGG
T ss_pred CCCCCeEEEEECCchHH-------------------------HHHHHHHHHHhc----CCCeEEEEeCCCcC
Confidence 22248999999986211 123677778875 99999999887664
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-16 Score=158.50 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=123.3
Q ss_pred CCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-
Q 016730 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT- 229 (384)
Q Consensus 151 ~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~- 229 (384)
...++++|.|..|.....+....+ .+|.+|||+|||+|+.+.+++.. +...|+++|+|+.+++.+++|++.+|+.
T Consensus 187 ~~~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~ 262 (385)
T 2b78_A 187 LNDGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDM 262 (385)
T ss_dssp SSSSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred ccccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 345677888866666655555544 57899999999999999998874 2358999999999999999999999997
Q ss_pred -eEEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 230 -NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 230 -~v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
++.++++|+.++...+ .+.+||+|++|||+.+.+- .........+.+++..+.++| +|||
T Consensus 263 ~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~-------------~~~~~~~~~~~~ll~~~~~~L----~pgG 325 (385)
T 2b78_A 263 ANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNK-------------KEVFSVSKDYHKLIRQGLEIL----SENG 325 (385)
T ss_dssp TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHHHHHHTE----EEEE
T ss_pred cceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCCh-------------hhHHHHHHHHHHHHHHHHHhc----CCCc
Confidence 8999999987642211 2358999999999864320 011123345677889999986 9999
Q ss_pred EEEEEeccCCc--cccHHHHHHHHhcCCCEEee
Q 016730 307 YIVYSTCSIMV--TENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 307 ~lvYsTCSi~~--~ENe~vv~~~l~~~~~~l~~ 337 (384)
+|++++|+-.. ++..+.+...+.+.+.+++.
T Consensus 326 ~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~ 358 (385)
T 2b78_A 326 LIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 358 (385)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEE
Confidence 99999998775 45566777777776666443
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-16 Score=142.36 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=94.7
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL 245 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~ 245 (384)
+.+...++...++.+|||+|||+|+.+.++++.+++.++|+++|+++.+++.+++++++.|+.+ +.++.+|+......+
T Consensus 47 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 126 (223)
T 3duw_A 47 GKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI 126 (223)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 3344455555678999999999999999999988756899999999999999999999999975 999999987542211
Q ss_pred C---CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 246 G---LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 246 ~---~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
. .+.||.|++|++++ ....++..+.++| ||||.+++..+...
T Consensus 127 ~~~~~~~fD~v~~d~~~~-------------------------~~~~~l~~~~~~L----~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 127 ENEKYEPFDFIFIDADKQ-------------------------NNPAYFEWALKLS----RPGTVIIGDNVVRE 171 (223)
T ss_dssp HHTTCCCCSEEEECSCGG-------------------------GHHHHHHHHHHTC----CTTCEEEEESCSGG
T ss_pred HhcCCCCcCEEEEcCCcH-------------------------HHHHHHHHHHHhc----CCCcEEEEeCCCcC
Confidence 1 15799999998732 1235677888875 99999998766543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=142.39 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=119.8
Q ss_pred CCcccccceEEEeCCcCcc------hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH
Q 016730 151 ATPEYMAGFYMLQSASSFL------PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 151 ~~~~~~~G~~~~Qd~ss~l------~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
..+.+..|+-. +..++.- ...++.++++.+|||+|||+|..+..++...++...|+|+|+|+.+++.+++|++
T Consensus 171 g~~l~~r~yr~-~~~a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~ 249 (354)
T 3tma_A 171 ERPLSRRFPKA-ALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAAL 249 (354)
T ss_dssp SSCGGGCCGGG-CSSCSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHH
T ss_pred CCccccccccc-CCCCCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHH
Confidence 34455566533 4333321 2233467789999999999999999999887444789999999999999999999
Q ss_pred HcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC
Q 016730 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (384)
Q Consensus 225 r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp 304 (384)
+.|+.++.+.++|+.+++... ..||.|++||||.- ...+...+..++.+++..+.+.| ||
T Consensus 250 ~~g~~~i~~~~~D~~~~~~~~--~~~D~Ii~npPyg~--------------r~~~~~~~~~~~~~~~~~~~~~L----kp 309 (354)
T 3tma_A 250 ASGLSWIRFLRADARHLPRFF--PEVDRILANPPHGL--------------RLGRKEGLFHLYWDFLRGALALL----PP 309 (354)
T ss_dssp HTTCTTCEEEECCGGGGGGTC--CCCSEEEECCCSCC------------------CHHHHHHHHHHHHHHHHTS----CT
T ss_pred HcCCCceEEEeCChhhCcccc--CCCCEEEECCCCcC--------------ccCCcccHHHHHHHHHHHHHHhc----CC
Confidence 999988999999999876433 56999999999721 11112345667788999999885 99
Q ss_pred CcEEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 305 GG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
||+++++|| |+..++.+++ .+++...
T Consensus 310 gG~l~i~t~------~~~~~~~~~~-~g~~~~~ 335 (354)
T 3tma_A 310 GGRVALLTL------RPALLKRALP-PGFALRH 335 (354)
T ss_dssp TCEEEEEES------CHHHHHHHCC-TTEEEEE
T ss_pred CcEEEEEeC------CHHHHHHHhh-cCcEEEE
Confidence 999999998 4667777777 7766543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-16 Score=153.23 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=117.8
Q ss_pred CcccccceEEEeCCcCcchhhhcC-CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 152 TPEYMAGFYMLQSASSFLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 152 ~~~~~~G~~~~Qd~ss~l~~~~L~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
...+..|.|..|......+...+. ..++.+|||+|||+|+.+..++.. + ..|+++|+|+.+++.+++|++.+|+.+
T Consensus 126 ~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~ 202 (332)
T 2igt_A 126 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQ 202 (332)
T ss_dssp CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred CccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 456677888878776655555554 456889999999999999998874 3 389999999999999999999999975
Q ss_pred --EEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 231 --TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 231 --v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
+.++++|+.++.... ..++||+|++||||.+.+-. .++ + .....+.+++..+.++| ||||
T Consensus 203 ~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~---~~~-~--------~~~~~~~~ll~~~~~~L----kpgG 266 (332)
T 2igt_A 203 APIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTH---GEV-W--------QLFDHLPLMLDICREIL----SPKA 266 (332)
T ss_dssp SCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTT---CCE-E--------EHHHHHHHHHHHHHHTB----CTTC
T ss_pred cceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCch---HHH-H--------HHHHHHHHHHHHHHHhc----CcCc
Confidence 899999987754221 13689999999998665411 000 1 12334567889999986 9999
Q ss_pred E-EEEEeccCCccc--cHHHHHHHHhcCCCEEe
Q 016730 307 Y-IVYSTCSIMVTE--NEAVIDYALKKRDVKLV 336 (384)
Q Consensus 307 ~-lvYsTCSi~~~E--Ne~vv~~~l~~~~~~l~ 336 (384)
. ++.++|+....+ -++.+...+++.+.++.
T Consensus 267 ~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 267 LGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 9 556667765322 23344444445565554
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-17 Score=160.46 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=118.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCccc-ccCCCCCCEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPK-VLGLNTVDRV 253 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~~~-~~~~~~fD~V 253 (384)
++|++|||+|||+|++++.++..+++.+.|+++|+++.+++.+++|++++|+++ +.++++|+..+.. .. .+.||+|
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~~~fD~V 129 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-GFGFDYV 129 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-SSCEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-CCCCcEE
Confidence 578999999999999999999987555789999999999999999999999987 9999999877643 33 2579999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
++||+|+. ..++..|+++| ++|| ++|+||+-........+...+++++.
T Consensus 130 ~lDP~g~~--------------------------~~~l~~a~~~L----k~gG-ll~~t~t~~~~l~g~~~~~~~rkYg~ 178 (392)
T 3axs_A 130 DLDPFGTP--------------------------VPFIESVALSM----KRGG-ILSLTATDTAPLSGTYPKTCMRRYMA 178 (392)
T ss_dssp EECCSSCC--------------------------HHHHHHHHHHE----EEEE-EEEEEECCHHHHTTSSHHHHHHHHSS
T ss_pred EECCCcCH--------------------------HHHHHHHHHHh----CCCC-EEEEEecchhhhccccHHHHHHHhCC
Confidence 99997531 23778888876 9999 78999976553332234445555654
Q ss_pred EEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 334 KLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
+........ ..+....-..-.-.....++.+.|...-..|||+-++.|
T Consensus 179 ~p~r~~~~~-e~~~r~~L~~~~~~a~~~~~~i~P~l~~~~~~y~Rv~vr 226 (392)
T 3axs_A 179 RPLRNEFKH-EVGIRILIKKVIELAAQYDIAMIPIFAYSHLHYFKLFFV 226 (392)
T ss_dssp BCCCSTTHH-HHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEE
T ss_pred ccccccccc-chhHHHHHHHHHHhcccCCCeEEeeEEEEeCcEEEEEEE
Confidence 433221100 000000000000000123477788766678899888765
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=140.82 Aligned_cols=127 Identities=25% Similarity=0.278 Sum_probs=103.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++|++|||+|||+|+.+..++.... ..|+|+|+|+.+++.+++|++.+|+.+ +.++++|+..+.. .+.||+|+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~Vi 197 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---cCCccEEE
Confidence 45799999999999999999998743 279999999999999999999999986 8899999998764 37899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC---CccccHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI---MVTENEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi---~~~ENe~vv~~~l~~~ 331 (384)
+|+|++. .+++..+.+.| ||||++++++|+- ..++..+.+...+++.
T Consensus 198 ~~~p~~~--------------------------~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 247 (278)
T 2frn_A 198 MGYVVRT--------------------------HEFIPKALSIA----KDGAIIHYHNTVPEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp ECCCSSG--------------------------GGGHHHHHHHE----EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred ECCchhH--------------------------HHHHHHHHHHC----CCCeEEEEEEeeccccccccHHHHHHHHHHHc
Confidence 9999422 23567788876 9999999999984 2345556667777777
Q ss_pred CCEEee
Q 016730 332 DVKLVP 337 (384)
Q Consensus 332 ~~~l~~ 337 (384)
++++..
T Consensus 248 G~~~~~ 253 (278)
T 2frn_A 248 GYDVEK 253 (278)
T ss_dssp TCEEEE
T ss_pred CCeeEE
Confidence 766543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-15 Score=132.32 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=106.2
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 247 (384)
++...+.+.++++|||+|||+|..+..++.. .+.|+++|+++.+++.+++|++++|+. ++.++.+|+.......
T Consensus 46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-- 120 (204)
T 3njr_A 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-- 120 (204)
T ss_dssp HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS--
T ss_pred HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC--
Confidence 3445567889999999999999999999887 478999999999999999999999998 8999999998743222
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
..||.|++++.. . +. ++..+.+.| ||||++++++|+. ++...+...
T Consensus 121 ~~~D~v~~~~~~----------------~----------~~-~l~~~~~~L----kpgG~lv~~~~~~---~~~~~~~~~ 166 (204)
T 3njr_A 121 PLPEAVFIGGGG----------------S----------QA-LYDRLWEWL----APGTRIVANAVTL---ESETLLTQL 166 (204)
T ss_dssp CCCSEEEECSCC----------------C----------HH-HHHHHHHHS----CTTCEEEEEECSH---HHHHHHHHH
T ss_pred CCCCEEEECCcc----------------c----------HH-HHHHHHHhc----CCCcEEEEEecCc---ccHHHHHHH
Confidence 579999987621 0 23 677788875 9999999999875 666677777
Q ss_pred HhcCCCEEeecC
Q 016730 328 LKKRDVKLVPCG 339 (384)
Q Consensus 328 l~~~~~~l~~~~ 339 (384)
+++.++++..+.
T Consensus 167 l~~~g~~i~~i~ 178 (204)
T 3njr_A 167 HARHGGQLLRID 178 (204)
T ss_dssp HHHHCSEEEEEE
T ss_pred HHhCCCcEEEEE
Confidence 777777776653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-16 Score=148.34 Aligned_cols=221 Identities=16% Similarity=0.182 Sum_probs=138.1
Q ss_pred HHHHHHHHhC--CHHHHHHHHHHcCCCCCeEEEEcC--C-CCCHHHHHHHHHHc--CCcccCCC---ccccccEEEecCC
Q 016730 77 FLIGALVEMF--PPVELMELIESFEKPRPICLRTNT--L-KTRRRDLADVLINR--GVNLDPLS---KWSKVGLVVYDSQ 146 (384)
Q Consensus 77 wl~~~l~~~~--~~~~~~~~~~~~~~~~p~~~RvN~--~-k~~~~~~~~~L~~~--g~~~~~~~---~~~~~~~~~~~~~ 146 (384)
|..++|.+.+ +..+++.++.......+.+++.|. . ..+.+.+.+.+... |..+.-+. .+ .++.+.-
T Consensus 22 ~~~~~l~~~~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~p~~yi~g~~~f--~~~~~~v-- 97 (284)
T 1nv8_A 22 DCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEF--MGLSFLV-- 97 (284)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEE--TTEEEEC--
T ss_pred HHHHHHHhccCChHHHHHHHHHHHcCCCHHHHHhccccccccCHHHHHHHHHHHHCCCCCeEEeeeeEE--CCeEEEe--
Confidence 5555555444 456677888888887888888876 2 22334555555443 32211100 01 1111110
Q ss_pred CCCCCCcccccceEEEeCCcCcchhhhc---CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH
Q 016730 147 VPIGATPEYMAGFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223 (384)
Q Consensus 147 ~~~~~~~~~~~G~~~~Qd~ss~l~~~~L---~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~ 223 (384)
..|.++.......++..++ ...++.+|||+|||+|..+..++.. + ...|+|+|+|+.+++.+++|+
T Consensus 98 ---------~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~ 166 (284)
T 1nv8_A 98 ---------EEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNA 166 (284)
T ss_dssp ---------CTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHH
T ss_pred ---------CCCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHH
Confidence 1122322333333333332 2346789999999999999999988 4 479999999999999999999
Q ss_pred HHcCCce-EEEEecCCCCcccccCCCCC---CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH-Hch
Q 016730 224 HRMGVTN-TIVCNYDGNELPKVLGLNTV---DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI-DMV 298 (384)
Q Consensus 224 ~r~g~~~-v~~~~~D~~~~~~~~~~~~f---D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~-~~L 298 (384)
+++|+.+ +.++++|+..... ++| |.|++||||.+.+. ...++++ ......+. .......+++.++ +.+
T Consensus 167 ~~~~l~~~v~~~~~D~~~~~~----~~f~~~D~IvsnPPyi~~~~-~l~~~v~-~ep~~al~-~~~dgl~~~~~i~~~~l 239 (284)
T 1nv8_A 167 ERHGVSDRFFVRKGEFLEPFK----EKFASIEMILSNPPYVKSSA-HLPKDVL-FEPPEALF-GGEDGLDFYREFFGRYD 239 (284)
T ss_dssp HHTTCTTSEEEEESSTTGGGG----GGTTTCCEEEECCCCBCGGG-SCTTSCC-CSCHHHHB-CTTTSCHHHHHHHHHCC
T ss_pred HHcCCCCceEEEECcchhhcc----cccCCCCEEEEcCCCCCccc-ccChhhc-cCcHHHhc-CCCcHHHHHHHHHHhcC
Confidence 9999986 9999999987422 367 99999999998876 4455554 21111100 0001124677777 775
Q ss_pred hccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 299 DANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 299 ~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
+|||.+++ .+...+++++.+.
T Consensus 240 ----~pgG~l~~---e~~~~q~~~v~~~ 260 (284)
T 1nv8_A 240 ----TSGKIVLM---EIGEDQVEELKKI 260 (284)
T ss_dssp ----CTTCEEEE---ECCTTCHHHHTTT
T ss_pred ----CCCCEEEE---EECchHHHHHHHH
Confidence 99999986 3455566655543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=139.73 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=102.9
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEec
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNY 236 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~ 236 (384)
|..++|...+.+...++.+.++.+|||+|||+|..+..+++.++ .+.|+++|+++.+++.+++++++.|+. ++.+..+
T Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 112 (233)
T 2gpy_A 34 QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112 (233)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34456666666777777777899999999999999999999876 479999999999999999999999985 5999999
Q ss_pred CCCCccccc-CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 237 DGNELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 237 D~~~~~~~~-~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|+....... ..+.||+|++|+||+ .+.+++..+.++| ||||+++++++..
T Consensus 113 d~~~~~~~~~~~~~fD~I~~~~~~~-------------------------~~~~~l~~~~~~L----~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 113 DALQLGEKLELYPLFDVLFIDAAKG-------------------------QYRRFFDMYSPMV----RPGGLILSDNVLF 163 (233)
T ss_dssp CGGGSHHHHTTSCCEEEEEEEGGGS-------------------------CHHHHHHHHGGGE----EEEEEEEEETTTC
T ss_pred CHHHHHHhcccCCCccEEEECCCHH-------------------------HHHHHHHHHHHHc----CCCeEEEEEcCCc
Confidence 987752222 136899999999853 1345788888886 9999999986543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=129.68 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=109.5
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D 237 (384)
|.+ .++.........+.++++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++|+++.|+.++.++.+|
T Consensus 21 g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d 98 (204)
T 3e05_A 21 KLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF 98 (204)
T ss_dssp TTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC
T ss_pred CcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 444 3333334455667888999999999999999999998854 47999999999999999999999999889999999
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
+....... ..||.|+++.+.. ...+++..+.+.| ||||++++++++.
T Consensus 99 ~~~~~~~~--~~~D~i~~~~~~~-------------------------~~~~~l~~~~~~L----kpgG~l~~~~~~~-- 145 (204)
T 3e05_A 99 APEGLDDL--PDPDRVFIGGSGG-------------------------MLEEIIDAVDRRL----KSEGVIVLNAVTL-- 145 (204)
T ss_dssp TTTTCTTS--CCCSEEEESCCTT-------------------------CHHHHHHHHHHHC----CTTCEEEEEECBH--
T ss_pred hhhhhhcC--CCCCEEEECCCCc-------------------------CHHHHHHHHHHhc----CCCeEEEEEeccc--
Confidence 86653322 6799999987631 1235788888875 9999999988765
Q ss_pred cccHHHHHHHHhcCCC
Q 016730 318 TENEAVIDYALKKRDV 333 (384)
Q Consensus 318 ~ENe~vv~~~l~~~~~ 333 (384)
++.+.+...+++.++
T Consensus 146 -~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 146 -DTLTKAVEFLEDHGY 160 (204)
T ss_dssp -HHHHHHHHHHHHTTC
T ss_pred -ccHHHHHHHHHHCCC
Confidence 566666677777775
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=134.59 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=95.6
Q ss_pred eEEEeCCc-Ccchhhh------cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 159 FYMLQSAS-SFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 159 ~~~~Qd~s-s~l~~~~------L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
.|-+=|+- |.|++.+ |.++||++|||+|||+|..+.++|..+++.|+|+|+|+++.+++.+++++++. .|+
T Consensus 51 e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni 128 (233)
T 4df3_A 51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNI 128 (233)
T ss_dssp EEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTE
T ss_pred eeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCe
Confidence 34444443 4555554 45899999999999999999999999998999999999999999999888764 478
Q ss_pred EEEecCCCCcccc-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 232 IVCNYDGNELPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 232 ~~~~~D~~~~~~~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
..+..|+..+... .....||.|++|.+.. + .....+.++.+.| ||||+++.
T Consensus 129 ~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~---------~---------------~~~~~l~~~~r~L----KpGG~lvI 180 (233)
T 4df3_A 129 FPILGDARFPEKYRHLVEGVDGLYADVAQP---------E---------------QAAIVVRNARFFL----RDGGYMLM 180 (233)
T ss_dssp EEEESCTTCGGGGTTTCCCEEEEEECCCCT---------T---------------HHHHHHHHHHHHE----EEEEEEEE
T ss_pred eEEEEeccCccccccccceEEEEEEeccCC---------h---------------hHHHHHHHHHHhc----cCCCEEEE
Confidence 8888888875332 2236899999998731 1 1234678888886 99999987
Q ss_pred Ee
Q 016730 311 ST 312 (384)
Q Consensus 311 sT 312 (384)
+.
T Consensus 181 ~i 182 (233)
T 4df3_A 181 AI 182 (233)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=128.30 Aligned_cols=131 Identities=17% Similarity=0.274 Sum_probs=93.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+++|++|||+|||+|..|..+++. .+.|+|+|+|+.+++.++++++..|+.++.+++.|...+.... .++||.|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~fD~v~~ 95 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV-REPIRAAIF 95 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC-CSCEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc-cCCcCEEEE
Confidence 568999999999999999999886 4799999999999999999999999988999887776654333 478999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc---cccHHHHHHH
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---TENEAVIDYA 327 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~---~ENe~vv~~~ 327 (384)
++++ +.. ....+......+.+.|..+.+.| ||||+++.+.++-++ +|.+.+.+++
T Consensus 96 ~~~~-----~~~--------~~~~~~~~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~ 153 (185)
T 3mti_A 96 NLGY-----LPS--------ADKSVITKPHTTLEAIEKILDRL----EVGGRLAIMIYYGHDGGDMEKDAVLEYV 153 (185)
T ss_dssp EEC------------------------CHHHHHHHHHHHHHHE----EEEEEEEEEEC------CHHHHHHHHHH
T ss_pred eCCC-----CCC--------cchhcccChhhHHHHHHHHHHhc----CCCcEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8642 110 11112222344566788888886 999999988876554 3445444444
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=130.28 Aligned_cols=150 Identities=13% Similarity=0.082 Sum_probs=103.9
Q ss_pred CCCCceEEEeccC-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cag-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+++|.+|||+||| +|..+..++... .+.|+|+|+++.+++.+++|+..+|+ ++.++.+|+..+.... .+.||+|+
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~~fD~I~ 128 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVV-EGTFDVIF 128 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTC-CSCEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcc-cCceeEEE
Confidence 4689999999999 999999999876 37899999999999999999999999 8899999976543322 37899999
Q ss_pred EcCCCCCCCcCCCC-chhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 255 LDAPCSGTGVISKD-ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 255 lDaPCSg~G~~~r~-p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
+|||+...+.-... |...+....... ....+++..+.++| ||||++++.+++- .++.+.+...+++.++
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L----kpgG~l~~~~~~~--~~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGE----EFSVKLLEEAFDHL----NPGGKVALYLPDK--EKLLNVIKERGIKLGY 198 (230)
T ss_dssp ECCCCC---------------CCSSSC----HHHHHHHHHHGGGE----EEEEEEEEEEESC--HHHHHHHHHHHHHTTC
T ss_pred ECCCCcCCccccccChhhhhccCccch----HHHHHHHHHHHHHh----CCCeEEEEEeccc--HhHHHHHHHHHHHcCC
Confidence 99998665532211 111111100111 12256888888886 9999999876542 2444555566777787
Q ss_pred EEeecC
Q 016730 334 KLVPCG 339 (384)
Q Consensus 334 ~l~~~~ 339 (384)
++..+.
T Consensus 199 ~~~~~~ 204 (230)
T 3evz_A 199 SVKDIK 204 (230)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 766553
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=135.89 Aligned_cols=125 Identities=26% Similarity=0.316 Sum_probs=99.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++|++|||+|||+|+.|+.+|.. +..+|+|+|+|+..++.+++|++++|+.+ +.++++|++.+.. ...||+|+
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---~~~~D~Vi 197 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---ccCCCEEE
Confidence 468999999999999999998876 33689999999999999999999999976 8999999998764 26899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE-Eec--cCCccccHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STC--SIMVTENEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY-sTC--Si~~~ENe~vv~~~l~~~ 331 (384)
+|+|+++. +.|..|+++| |+||.|.| ..+ ....++-.+.++.+.+..
T Consensus 198 ~~~p~~~~--------------------------~~l~~a~~~l----k~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~ 247 (278)
T 3k6r_A 198 MGYVVRTH--------------------------EFIPKALSIA----KDGAIIHYHNTVPEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp ECCCSSGG--------------------------GGHHHHHHHE----EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred ECCCCcHH--------------------------HHHHHHHHHc----CCCCEEEEEeeecccccchhHHHHHHHHHHHc
Confidence 99996432 2567788876 99999864 332 233344556777777777
Q ss_pred CCEE
Q 016730 332 DVKL 335 (384)
Q Consensus 332 ~~~l 335 (384)
++++
T Consensus 248 g~~v 251 (278)
T 3k6r_A 248 GYDV 251 (278)
T ss_dssp TCEE
T ss_pred CCcE
Confidence 6554
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=139.03 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=112.8
Q ss_pred CcccccceEEEeCCcCcchhhhc-CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 152 TPEYMAGFYMLQSASSFLPVMAL-APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 152 ~~~~~~G~~~~Qd~ss~l~~~~L-~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
...|..++...|+..+.+..... ...+|.+|||+| |+|..+..++... ..+.|+++|+|+.+++.+++|++++|+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g~~~ 222 (373)
T 2qm3_A 145 LHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIGYED 222 (373)
T ss_dssp CGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHTCCC
T ss_pred chhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 34566666666665555443322 234689999999 9999998887753 33699999999999999999999999988
Q ss_pred EEEEecCCCC-cccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE-E
Q 016730 231 TIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY-I 308 (384)
Q Consensus 231 v~~~~~D~~~-~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~-l 308 (384)
+.++.+|+.. ++... .+.||+|++||||+.. . ...+|..+.+.| ||||+ +
T Consensus 223 v~~~~~D~~~~l~~~~-~~~fD~Vi~~~p~~~~----------------~-------~~~~l~~~~~~L----kpgG~~~ 274 (373)
T 2qm3_A 223 IEIFTFDLRKPLPDYA-LHKFDTFITDPPETLE----------------A-------IRAFVGRGIATL----KGPRCAG 274 (373)
T ss_dssp EEEECCCTTSCCCTTT-SSCBSEEEECCCSSHH----------------H-------HHHHHHHHHHTB----CSTTCEE
T ss_pred EEEEEChhhhhchhhc-cCCccEEEECCCCchH----------------H-------HHHHHHHHHHHc----ccCCeEE
Confidence 9999999988 54312 2589999999997421 1 166889999986 99995 5
Q ss_pred EEEeccCCccccH---HHHHHHHh-cCCCEEee
Q 016730 309 VYSTCSIMVTENE---AVIDYALK-KRDVKLVP 337 (384)
Q Consensus 309 vYsTCSi~~~ENe---~vv~~~l~-~~~~~l~~ 337 (384)
+|++|+ ..++. ..+..++. ..++++..
T Consensus 275 ~~~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~ 305 (373)
T 2qm3_A 275 YFGITR--RESSLDKWREIQKLLLNEFNVVITD 305 (373)
T ss_dssp EEEECT--TTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred EEEEec--CcCCHHHHHHHHHHHHHhcCcchhh
Confidence 888886 23444 55666666 66665543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-15 Score=140.62 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=99.0
Q ss_pred EEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCC
Q 016730 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDG 238 (384)
Q Consensus 160 ~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~ 238 (384)
+.++...+.+...++...++.+|||+|||+|..|.++++.++..+.|+++|+++.+++.+++++++.|+. ++.++.+|+
T Consensus 42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda 121 (242)
T 3r3h_A 42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121 (242)
T ss_dssp TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 3344555556666666667889999999999999999998876689999999999999999999999996 799999998
Q ss_pred CCccccc----CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 239 NELPKVL----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 239 ~~~~~~~----~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
....... ..++||.|++|++.. .....+..+.++| ||||+|++..+.
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~L----kpGG~lv~d~~~ 172 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDADKT-------------------------NYLNYYELALKLV----TPKGLIAIDNIF 172 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESCGG-------------------------GHHHHHHHHHHHE----EEEEEEEEECSS
T ss_pred HHHHHHHhhccCCCCEeEEEEcCChH-------------------------HhHHHHHHHHHhc----CCCeEEEEECCc
Confidence 7653221 026899999998610 0123677778876 999999987655
Q ss_pred C
Q 016730 315 I 315 (384)
Q Consensus 315 i 315 (384)
.
T Consensus 173 ~ 173 (242)
T 3r3h_A 173 W 173 (242)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=125.17 Aligned_cols=125 Identities=16% Similarity=0.243 Sum_probs=97.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+++|.+|||+|||+|..+..++...++.+.|+++|+++.+++.++++++..|+ .++.++++|+..++... .++||.|
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v 97 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-DCPVKAV 97 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-CSCEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-cCCceEE
Confidence 467899999999999999999999886567999999999999999999999998 67999999988776433 3789999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++|+|.-.. .+........ ...+++..+.++| ||||++++++++-++
T Consensus 98 ~~~~~~~~~------~~~~~~~~~~-------~~~~~l~~~~~~L----k~gG~l~~~~~~~~~ 144 (197)
T 3eey_A 98 MFNLGYLPS------GDHSISTRPE-------TTIQALSKAMELL----VTGGIITVVIYYGGD 144 (197)
T ss_dssp EEEESBCTT------SCTTCBCCHH-------HHHHHHHHHHHHE----EEEEEEEEEECCBTT
T ss_pred EEcCCcccC------cccccccCcc-------cHHHHHHHHHHhC----cCCCEEEEEEccCCC
Confidence 999875110 1111111222 2345788888886 999999988765443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=133.44 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=96.3
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccc
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~ 243 (384)
....+...++...++.+|||+|||+|+.+.++++.+++.++|+++|+++.+++.+++++++.|+. ++.++.+|+.+...
T Consensus 57 ~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 136 (237)
T 3c3y_A 57 LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALD 136 (237)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 33344444455556789999999999999999999876689999999999999999999999996 48999999876422
Q ss_pred cc-----CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 244 VL-----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 244 ~~-----~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.+ ..+.||.|++|++++ .+..+++.+.++| ||||+|++.+|..
T Consensus 137 ~l~~~~~~~~~fD~I~~d~~~~-------------------------~~~~~l~~~~~~L----~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 137 NLLQGQESEGSYDFGFVDADKP-------------------------NYIKYHERLMKLV----KVGGIVAYDNTLW 184 (237)
T ss_dssp HHHHSTTCTTCEEEEEECSCGG-------------------------GHHHHHHHHHHHE----EEEEEEEEECTTG
T ss_pred HHHhccCCCCCcCEEEECCchH-------------------------HHHHHHHHHHHhc----CCCeEEEEecCCc
Confidence 12 136899999997631 1245777888876 9999999998754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=128.59 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=97.1
Q ss_pred cCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH---cCCc-eEEEEecCCCCc
Q 016730 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR---MGVT-NTIVCNYDGNEL 241 (384)
Q Consensus 166 ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r---~g~~-~v~~~~~D~~~~ 241 (384)
.+.+.+.++...++.+|||+|||+|..+..+++..+ ...|+++|+++.+++.+++|+.. +|+. ++.++++|+..+
T Consensus 24 D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR 102 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred HHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence 456667777778899999999999999999999875 37999999999999999999998 8886 499999999887
Q ss_pred cc-----ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 242 PK-----VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 242 ~~-----~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.. .+..++||.|++|||+...+ -...|+....... .........++..+.++| ||||+++...
T Consensus 103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~---~~~~~~~~~~l~~~~~~L----kpgG~l~~~~ 170 (260)
T 2ozv_A 103 AKARVEAGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEAH---AMTEGLFEDWIRTASAIM----VSGGQLSLIS 170 (260)
T ss_dssp HHHHHHTTCCTTCEEEEEECCCC-------------------------CCHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred hhhhhhhccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHHh---hcCcCCHHHHHHHHHHHc----CCCCEEEEEE
Confidence 21 12347899999999987653 1222222111000 000112456788888886 9999998754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-15 Score=133.03 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=79.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cCCCCCCEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTVDRVL 254 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~~~~fD~Vl 254 (384)
.++.+|||+|||+|..+.+++...+ ...|+++|+++.+++.+++|+...|. ++.++++|+...... ...++||.|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEE
Confidence 6789999999999999999999864 36999999999999999999999888 788888888763211 0126899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHH-H---HHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh-
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLED-I---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK- 329 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~-i---~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~- 329 (384)
+|||+...+.+..-+.......+.. + ........+++..+.++ |||||++++.++.. ...+.+..+++
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----LkpgG~l~~~~~~~---~~~~~~~~~l~~ 179 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYV----LARGRAGVFLEVGH---NQADEVARLFAP 179 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGG----BCSSSEEEEEECTT---SCHHHHHHHTGG
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHH----hcCCCeEEEEEECC---ccHHHHHHHHHH
Confidence 9999977765533211100000000 0 00011224566666666 49999966665543 44555566666
Q ss_pred -cCCCEEe
Q 016730 330 -KRDVKLV 336 (384)
Q Consensus 330 -~~~~~l~ 336 (384)
..++..+
T Consensus 180 ~~~gf~~~ 187 (215)
T 4dzr_A 180 WRERGFRV 187 (215)
T ss_dssp GGGGTEEC
T ss_pred hhcCCceE
Confidence 5565443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=120.62 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=89.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+|.+|||+|||+|..+..+++. +...|+|+|+|+.+++.+++|++.+|+.++.++++|+..+......++||.|++|
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEEC
Confidence 57899999999999999877764 3468999999999999999999999998899999999876543334789999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHH--chhccCCCCcEEEEEeccCC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID--MVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~--~L~~~lkpGG~lvYsTCSi~ 316 (384)
+|.... .. ...+++..+.+ + |||||+++..+.+-.
T Consensus 121 ~p~~~~--------------~~-------~~~~~l~~~~~~~~----L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 121 PPYNVD--------------SA-------DVDAILAALGTNGW----TREGTVAVVERATTC 157 (189)
T ss_dssp CCTTSC--------------HH-------HHHHHHHHHHHSSS----CCTTCEEEEEEETTS
T ss_pred CCCCcc--------------hh-------hHHHHHHHHHhcCc----cCCCeEEEEEecCCC
Confidence 994221 11 22445666666 5 499999999876543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=136.64 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=83.4
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC-----------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL----------- 247 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~----------- 247 (384)
|.+|||+|||+|+.|+.+|.. ...|+|+|+++.+++.+++|++.+|++|+.++.+|+.++...+..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence 678999999999999988763 358999999999999999999999999999999998765322211
Q ss_pred ---CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 ---NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ---~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
..||+|++|||+.|.. ..+++.| +++|++||++|+-
T Consensus 291 ~~~~~fD~Vv~dPPr~g~~----------------------------~~~~~~l----~~~g~ivyvsc~p 329 (369)
T 3bt7_A 291 LKSYQCETIFVDPPRSGLD----------------------------SETEKMV----QAYPRILYISCNP 329 (369)
T ss_dssp GGGCCEEEEEECCCTTCCC----------------------------HHHHHHH----TTSSEEEEEESCH
T ss_pred cccCCCCEEEECcCccccH----------------------------HHHHHHH----hCCCEEEEEECCH
Confidence 2799999999976431 2345555 7999999999964
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-13 Score=119.80 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=101.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..++...+ ...|+|+|+++.+++.+++|+.+.|+.++.++.+|+..++..+..+.||.|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 4688999999999999999999875 379999999999999999999999999999999999886644445789999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
.|. |..+. ...... -.+..++..+.++| ||||.++++|-. ..--+.+...++..+++++
T Consensus 119 ~~~---------~~~~~---~~~~~~--~~~~~~l~~~~~~L----kpgG~l~~~~~~---~~~~~~~~~~~~~~g~~~~ 177 (214)
T 1yzh_A 119 FSD---------PWPKK---RHEKRR--LTYKTFLDTFKRIL----PENGEIHFKTDN---RGLFEYSLVSFSQYGMKLN 177 (214)
T ss_dssp SCC---------CCCSG---GGGGGS--TTSHHHHHHHHHHS----CTTCEEEEEESC---HHHHHHHHHHHHHHTCEEE
T ss_pred CCC---------Ccccc---chhhhc--cCCHHHHHHHHHHc----CCCcEEEEEeCC---HHHHHHHHHHHHHCCCeee
Confidence 772 11110 000000 02456788888875 999999887631 1111223334445577766
Q ss_pred ec
Q 016730 337 PC 338 (384)
Q Consensus 337 ~~ 338 (384)
..
T Consensus 178 ~~ 179 (214)
T 1yzh_A 178 GV 179 (214)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-14 Score=131.79 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=89.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
..+.+|++|||+|||+|..+..++...+ .+.|+|+|+++.+++.+++|++.+|+.++.++++|+..+ .. .+.||+|
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--~~~~D~V 190 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--KDVADRV 190 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--TTCEEEE
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--cCCceEE
Confidence 3467899999999999999999999864 469999999999999999999999999999999999887 32 3689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++|+|. + ..+++..+.+.| ||||+++ .+|....
T Consensus 191 i~d~p~---~-----------------------~~~~l~~~~~~L----kpgG~l~-~s~~~~~ 223 (272)
T 3a27_A 191 IMGYVH---K-----------------------THKFLDKTFEFL----KDRGVIH-YHETVAE 223 (272)
T ss_dssp EECCCS---S-----------------------GGGGHHHHHHHE----EEEEEEE-EEEEEEG
T ss_pred EECCcc---c-----------------------HHHHHHHHHHHc----CCCCEEE-EEEcCcc
Confidence 999994 1 123567777775 9999876 5565543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=124.44 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=91.1
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc------cC---
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------LG--- 246 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~------~~--- 246 (384)
+++|.+|||+|||||++|.++++. .+.|+|+|+++.. .+.++.++.+|+...... +.
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 468999999999999999999887 4799999999742 346788999999875321 11
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
.++||+|++|+|+..+|.. ..+......++..+|..|.++| ||||+++.. ++..++...+..
T Consensus 89 ~~~~D~Vlsd~~~~~~g~~-----------~~d~~~~~~l~~~~l~~a~~~L----kpGG~lv~k---~~~~~~~~~~~~ 150 (191)
T 3dou_A 89 IEKVDDVVSDAMAKVSGIP-----------SRDHAVSYQIGQRVMEIAVRYL----RNGGNVLLK---QFQGDMTNDFIA 150 (191)
T ss_dssp CSSEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEE---EECSTHHHHHHH
T ss_pred CCcceEEecCCCcCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHc----cCCCEEEEE---EcCCCCHHHHHH
Confidence 1389999999998877752 1222334466778888888886 999999854 455566666666
Q ss_pred HHhc
Q 016730 327 ALKK 330 (384)
Q Consensus 327 ~l~~ 330 (384)
.++.
T Consensus 151 ~l~~ 154 (191)
T 3dou_A 151 IWRK 154 (191)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 6654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-14 Score=133.42 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=96.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--C--CceEEEEecCCCCcccccCCCCCCE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--G--VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g--~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
..+.+|||+|||+|+.+..+++..+ .++|+++|+|+..++.+++++..+ + ..++.++.+|+..+.... .++||+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~ 166 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDV 166 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-SSCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCceE
Confidence 3458999999999999998887643 479999999999999999998662 2 357899999987643222 368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc--CCccccHHHHHHHHhc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMVTENEAVIDYALKK 330 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS--i~~~ENe~vv~~~l~~ 330 (384)
|++|+|+...|.. . .-.+.+++..+.+.| ||||.+++.+|| +..++...+++.+.+.
T Consensus 167 Ii~d~~~~~~~~~-----~------------~l~~~~~l~~~~~~L----kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 225 (296)
T 1inl_A 167 IIIDSTDPTAGQG-----G------------HLFTEEFYQACYDAL----KEDGVFSAETEDPFYDIGWFKLAYRRISKV 225 (296)
T ss_dssp EEEEC---------------------------CCSHHHHHHHHHHE----EEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred EEEcCCCcccCch-----h------------hhhHHHHHHHHHHhc----CCCcEEEEEccCcccCHHHHHHHHHHHHHH
Confidence 9999986423210 0 002356778888876 999999999998 4567777787777666
Q ss_pred C
Q 016730 331 R 331 (384)
Q Consensus 331 ~ 331 (384)
+
T Consensus 226 F 226 (296)
T 1inl_A 226 F 226 (296)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=128.87 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=99.4
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 247 (384)
.....+++.+|.+|||+|||+|..+.+++..+.+.+.|+++|+++.+++.++++++..|+.+ +.+...|+... +..
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~ 160 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG---IEE 160 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC---CCC
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc---cCC
Confidence 44556678899999999999999999999987666899999999999999999999999987 99999998754 234
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+.||.|++|+|+. .+++.++.+.| ||||+++..+-+. +....+...
T Consensus 161 ~~~D~v~~~~~~~---------------------------~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~~ 206 (255)
T 3mb5_A 161 ENVDHVILDLPQP---------------------------ERVVEHAAKAL----KPGGFFVAYTPCS---NQVMRLHEK 206 (255)
T ss_dssp CSEEEEEECSSCG---------------------------GGGHHHHHHHE----EEEEEEEEEESSH---HHHHHHHHH
T ss_pred CCcCEEEECCCCH---------------------------HHHHHHHHHHc----CCCCEEEEEECCH---HHHHHHHHH
Confidence 6799999998831 23577788876 9999998654322 233333445
Q ss_pred HhcCC
Q 016730 328 LKKRD 332 (384)
Q Consensus 328 l~~~~ 332 (384)
+++.+
T Consensus 207 l~~~g 211 (255)
T 3mb5_A 207 LREFK 211 (255)
T ss_dssp HHHTG
T ss_pred HHHcC
Confidence 55554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=114.41 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=101.6
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 248 (384)
....+.+.++.+|||+|||+|..+.+++...+ .+.|+++|+++.+++.+++++..+|+. ++ ++..|+...... ..+
T Consensus 17 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~-~~~ 93 (178)
T 3hm2_A 17 AISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD-VPD 93 (178)
T ss_dssp HHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG-CCS
T ss_pred HHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc-cCC
Confidence 34556788999999999999999999888764 479999999999999999999999997 78 778887542211 126
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
.||.|+++.+... .+++..+.+.| ||||++++++++. ++...+..++
T Consensus 94 ~~D~i~~~~~~~~--------------------------~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~~~ 140 (178)
T 3hm2_A 94 NPDVIFIGGGLTA--------------------------PGVFAAAWKRL----PVGGRLVANAVTV---ESEQMLWALR 140 (178)
T ss_dssp CCSEEEECC-TTC--------------------------TTHHHHHHHTC----CTTCEEEEEECSH---HHHHHHHHHH
T ss_pred CCCEEEECCcccH--------------------------HHHHHHHHHhc----CCCCEEEEEeecc---ccHHHHHHHH
Confidence 8999998665210 34677888875 9999999988765 5556666666
Q ss_pred hcCCCEEeec
Q 016730 329 KKRDVKLVPC 338 (384)
Q Consensus 329 ~~~~~~l~~~ 338 (384)
++.+.++..+
T Consensus 141 ~~~~~~~~~~ 150 (178)
T 3hm2_A 141 KQFGGTISSF 150 (178)
T ss_dssp HHHCCEEEEE
T ss_pred HHcCCeeEEE
Confidence 6666666543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=127.09 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=102.6
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~ 248 (384)
.+..+++.+|.+|||+|||+|..+..++..+.+.+.|+++|+++.+++.+++|++++|+ .++.+...|+... +..+
T Consensus 104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~ 180 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEK 180 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCC
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCC
Confidence 34556788999999999999999999999866568999999999999999999999998 6799999998765 2236
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
.||+|++|+|+. .+++..+.+.| +|||++++.+++. +....+...+
T Consensus 181 ~~D~V~~~~~~~---------------------------~~~l~~~~~~L----~pgG~l~~~~~~~---~~~~~~~~~l 226 (277)
T 1o54_A 181 DVDALFLDVPDP---------------------------WNYIDKCWEAL----KGGGRFATVCPTT---NQVQETLKKL 226 (277)
T ss_dssp SEEEEEECCSCG---------------------------GGTHHHHHHHE----EEEEEEEEEESSH---HHHHHHHHHH
T ss_pred ccCEEEECCcCH---------------------------HHHHHHHHHHc----CCCCEEEEEeCCH---HHHHHHHHHH
Confidence 799999998841 23677777876 9999999988764 2222333444
Q ss_pred hcCCCEEeec
Q 016730 329 KKRDVKLVPC 338 (384)
Q Consensus 329 ~~~~~~l~~~ 338 (384)
+..++..+..
T Consensus 227 ~~~gf~~~~~ 236 (277)
T 1o54_A 227 QELPFIRIEV 236 (277)
T ss_dssp HHSSEEEEEE
T ss_pred HHCCCceeEE
Confidence 5567665543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=122.56 Aligned_cols=110 Identities=18% Similarity=0.105 Sum_probs=85.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC--ceEEEEecCCCCcccccCCCC-CCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDGNELPKVLGLNT-VDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~--~~v~~~~~D~~~~~~~~~~~~-fD~Vl 254 (384)
++.+|||+|||+|..+..+++. ..+.|+++|+|+.+++.+++|++.+|+ .++.++++|+..+......+. ||+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 6889999999999999886665 235899999999999999999999998 689999999876533222367 99999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHH--HHchhccCCCCcEEEEEeccCC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA--IDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a--~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+|+|+. .+ . ..+++..+ .++ |||||++++++|+..
T Consensus 131 ~~~~~~-~~---------------~-------~~~~l~~~~~~~~----LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 131 LDPPFH-FN---------------L-------AEQAISLLCENNW----LKPNALIYVETEKDK 167 (201)
T ss_dssp ECCCSS-SC---------------H-------HHHHHHHHHHTTC----EEEEEEEEEEEESSS
T ss_pred ECCCCC-Cc---------------c-------HHHHHHHHHhcCc----cCCCcEEEEEECCCC
Confidence 999942 11 0 12344444 344 499999999999875
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-13 Score=120.06 Aligned_cols=132 Identities=24% Similarity=0.276 Sum_probs=93.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc--ccCCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK--VLGLNTVD 251 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~--~~~~~~fD 251 (384)
+.+++|++|||+|||+|..+.+++...+ .+.|+|+|+|+.+++.+.+++++. .|+.++.+|+..... ... ++||
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~-~~fD 128 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIV-EKVD 128 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccc-ccee
Confidence 4567899999999999999999999887 589999999999988877777654 478888889877421 122 6899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe---ccCCccccHHHHH-H-
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST---CSIMVTENEAVID-Y- 326 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT---CSi~~~ENe~vv~-~- 326 (384)
.|++|.+ +|+ ....++.++.++| ||||+++++. |.-.....+++.. .
T Consensus 129 ~V~~~~~---------~~~---------------~~~~~l~~~~r~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 180 (210)
T 1nt2_A 129 LIYQDIA---------QKN---------------QIEILKANAEFFL----KEKGEVVIMVKARSIDSTAEPEEVFKSVL 180 (210)
T ss_dssp EEEECCC---------STT---------------HHHHHHHHHHHHE----EEEEEEEEEEEHHHHCTTSCHHHHHHHHH
T ss_pred EEEEecc---------Chh---------------HHHHHHHHHHHHh----CCCCEEEEEEecCCccccCCHHHHHHHHH
Confidence 9999842 110 0123477788876 9999999984 3222333344431 2
Q ss_pred -HHhcCCCEEeec
Q 016730 327 -ALKKRDVKLVPC 338 (384)
Q Consensus 327 -~l~~~~~~l~~~ 338 (384)
.++.. ++++..
T Consensus 181 ~~l~~~-f~~~~~ 192 (210)
T 1nt2_A 181 KEMEGD-FKIVKH 192 (210)
T ss_dssp HHHHTT-SEEEEE
T ss_pred HHHHhh-cEEeee
Confidence 25666 777653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=127.04 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=78.6
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCccccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL 245 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~ 245 (384)
..++..+....++.+|||+|||+|+.+..++.. .+.|+|+|+|+.+++.+++|+++.|+ .++.++++|+..++.
T Consensus 67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-- 141 (241)
T 3gdh_A 67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-- 141 (241)
T ss_dssp HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--
T ss_pred HHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--
Confidence 334444444557999999999999999999885 27899999999999999999999999 589999999987652
Q ss_pred CCCCCCEEEEcCCCCCCCcCC
Q 016730 246 GLNTVDRVLLDAPCSGTGVIS 266 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~ 266 (384)
.+.||+|++|+||.+.+...
T Consensus 142 -~~~~D~v~~~~~~~~~~~~~ 161 (241)
T 3gdh_A 142 -FLKADVVFLSPPWGGPDYAT 161 (241)
T ss_dssp -GCCCSEEEECCCCSSGGGGG
T ss_pred -cCCCCEEEECCCcCCcchhh
Confidence 26899999999998876543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=126.48 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=92.2
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCcccccCCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..++++.+|||+|||+|..|..+++.++..++|+++|+++.+++.+++++++.|+. ++.++.+|+.+.......++||
T Consensus 52 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD 131 (221)
T 3dr5_A 52 TNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQ 131 (221)
T ss_dssp SCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEE
T ss_pred hCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcC
Confidence 34455669999999999999999998876789999999999999999999999986 7999999987754333347899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|++|++.. ...+++..+.++| ||||+|++..+..
T Consensus 132 ~V~~d~~~~-------------------------~~~~~l~~~~~~L----kpGG~lv~dn~~~ 166 (221)
T 3dr5_A 132 LVFGQVSPM-------------------------DLKALVDAAWPLL----RRGGALVLADALL 166 (221)
T ss_dssp EEEECCCTT-------------------------THHHHHHHHHHHE----EEEEEEEETTTTG
T ss_pred eEEEcCcHH-------------------------HHHHHHHHHHHHc----CCCcEEEEeCCCC
Confidence 999997621 0124677788876 9999999977765
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=127.75 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=99.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~Vl 254 (384)
+.++.+|||+|||+|..+..++...++ +.|+++|+++.+++.+++|++++|+.|+.++++|+.+++.. ...++||.|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 357889999999999999999988754 79999999999999999999999999999999998776431 1126899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+.+-. . ...++..+.++| ||||++++..+....+|-++ +...++..+++
T Consensus 157 s~a~~----------------~----------~~~ll~~~~~~L----kpgG~l~~~~g~~~~~e~~~-~~~~l~~~G~~ 205 (249)
T 3g89_A 157 ARAVA----------------P----------LCVLSELLLPFL----EVGGAAVAMKGPRVEEELAP-LPPALERLGGR 205 (249)
T ss_dssp EESSC----------------C----------HHHHHHHHGGGE----EEEEEEEEEECSCCHHHHTT-HHHHHHHHTEE
T ss_pred ECCcC----------------C----------HHHHHHHHHHHc----CCCeEEEEEeCCCcHHHHHH-HHHHHHHcCCe
Confidence 85420 0 134677777875 99999998888755444333 33455566666
Q ss_pred Eee
Q 016730 335 LVP 337 (384)
Q Consensus 335 l~~ 337 (384)
+..
T Consensus 206 ~~~ 208 (249)
T 3g89_A 206 LGE 208 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=121.43 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=102.2
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
....+++.+|.+|||+|||+|..+..++..+++.+.|+++|+++.+++.++++++.. |..++.+...|+...+ +..+
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~--~~~~ 165 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE--LEEA 165 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC--CCTT
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC--CCCC
Confidence 445567889999999999999999999998765579999999999999999999998 8778999999987653 2336
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
.||+|++|+|. | .++|..+.++| ||||+++.++.+. +....+...+
T Consensus 166 ~~D~v~~~~~~---------~------------------~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~~l 211 (258)
T 2pwy_A 166 AYDGVALDLME---------P------------------WKVLEKAALAL----KPDRFLVAYLPNI---TQVLELVRAA 211 (258)
T ss_dssp CEEEEEEESSC---------G------------------GGGHHHHHHHE----EEEEEEEEEESCH---HHHHHHHHHH
T ss_pred CcCEEEECCcC---------H------------------HHHHHHHHHhC----CCCCEEEEEeCCH---HHHHHHHHHH
Confidence 89999999872 1 23677788876 9999999877544 2222333445
Q ss_pred hcCCCEEee
Q 016730 329 KKRDVKLVP 337 (384)
Q Consensus 329 ~~~~~~l~~ 337 (384)
++.++..+.
T Consensus 212 ~~~gf~~~~ 220 (258)
T 2pwy_A 212 EAHPFRLER 220 (258)
T ss_dssp TTTTEEEEE
T ss_pred HHCCCceEE
Confidence 556766544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=128.97 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=94.0
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~ 241 (384)
+.....+...++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.|+. ++.++.+|+...
T Consensus 64 ~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 143 (247)
T 1sui_A 64 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 143 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH
Confidence 3333444445555556789999999999999999999875689999999999999999999999984 699999998764
Q ss_pred cccc-----CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 242 PKVL-----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 242 ~~~~-----~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.... ..+.||.|++|+++. ....++..+.++| ||||+|++..
T Consensus 144 l~~l~~~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~L----kpGG~lv~d~ 190 (247)
T 1sui_A 144 LDEMIKDEKNHGSYDFIFVDADKD-------------------------NYLNYHKRLIDLV----KVGGVIGYDN 190 (247)
T ss_dssp HHHHHHSGGGTTCBSEEEECSCST-------------------------THHHHHHHHHHHB----CTTCCEEEEC
T ss_pred HHHHHhccCCCCCEEEEEEcCchH-------------------------HHHHHHHHHHHhC----CCCeEEEEec
Confidence 2211 136899999997621 1234677777875 9999999875
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=131.20 Aligned_cols=101 Identities=26% Similarity=0.312 Sum_probs=87.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+|++|||+|||+|+.+.. +. +...|+|+|+|+..++.+++|++.+|+ .++.++++|+..+. ..||+|++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIM 264 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEE
Confidence 5789999999999999988 65 357999999999999999999999998 57999999998764 67999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|||..+. +++..+.++| +|||.++|++|+-.
T Consensus 265 dpP~~~~--------------------------~~l~~~~~~L----~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 265 NLPKFAH--------------------------KFIDKALDIV----EEGGVIHYYTIGKD 295 (336)
T ss_dssp CCTTTGG--------------------------GGHHHHHHHE----EEEEEEEEEEEESS
T ss_pred CCcHhHH--------------------------HHHHHHHHHc----CCCCEEEEEEeecC
Confidence 9995421 4677788876 99999999999987
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-13 Score=120.92 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=91.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.+++++++.|+.|+.++.+|+..++..+..+.||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 4678999999999999999999865 378999999999999999999999999999999999886544445789999987
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|+ |..+ ......++ .+..+|..+.+.| ||||.|+++|
T Consensus 116 ~~~---------p~~~---~~~~~~rl--~~~~~l~~~~~~L----kpgG~l~~~t 153 (213)
T 2fca_A 116 FSD---------PWPK---KRHEKRRL--TYSHFLKKYEEVM----GKGGSIHFKT 153 (213)
T ss_dssp SCC---------CCCS---GGGGGGST--TSHHHHHHHHHHH----TTSCEEEEEE
T ss_pred CCC---------CCcC---cccccccc--CcHHHHHHHHHHc----CCCCEEEEEe
Confidence 653 1111 00000000 2456788888886 9999999887
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=128.65 Aligned_cols=87 Identities=23% Similarity=0.211 Sum_probs=74.2
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTV 250 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~~~~f 250 (384)
.+++.++++|||+|||+|..+..++.. .+.|+|+|+|+.+++.+++|++.+|+.|+.+..+|+...... +..+.|
T Consensus 281 ~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~f 357 (433)
T 1uwv_A 281 WLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 (433)
T ss_dssp HHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred hhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCC
Confidence 356678899999999999999998876 368999999999999999999999999999999999874221 223689
Q ss_pred CEEEEcCCCCCC
Q 016730 251 DRVLLDAPCSGT 262 (384)
Q Consensus 251 D~VllDaPCSg~ 262 (384)
|.|++|||++|.
T Consensus 358 D~Vv~dPPr~g~ 369 (433)
T 1uwv_A 358 DKVLLDPARAGA 369 (433)
T ss_dssp SEEEECCCTTCC
T ss_pred CEEEECCCCccH
Confidence 999999997655
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=125.38 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=94.1
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL 245 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~ 245 (384)
+.+...++...++.+|||+|||+|..|.+++..+++.++|+++|+++.+++.+++++++.|+.+ +.++++|+.......
T Consensus 53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 132 (225)
T 3tr6_A 53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAEL 132 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHh
Confidence 3444455555678899999999999999999988756899999999999999999999999975 999999986542222
Q ss_pred CC----CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 246 GL----NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 246 ~~----~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.. ++||.|++|++. ..+..++..+.++| ||||+|++..+..
T Consensus 133 ~~~~~~~~fD~v~~~~~~-------------------------~~~~~~l~~~~~~L----~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 133 IHAGQAWQYDLIYIDADK-------------------------ANTDLYYEESLKLL----REGGLIAVDNVLR 177 (225)
T ss_dssp HTTTCTTCEEEEEECSCG-------------------------GGHHHHHHHHHHHE----EEEEEEEEECSSG
T ss_pred hhccCCCCccEEEECCCH-------------------------HHHHHHHHHHHHhc----CCCcEEEEeCCCc
Confidence 11 689999999861 11234677888876 9999998876543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=123.45 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=94.7
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~ 241 (384)
|.....+...++...++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++++++.|+. ++.++.+|+...
T Consensus 56 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ 134 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 333344455555666789999999999999999998544 589999999999999999999999986 799999999775
Q ss_pred cc-ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 242 PK-VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 242 ~~-~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.. .. .++||.|++|+++.. +..++..+.++| ||||+|++..+
T Consensus 135 ~~~~~-~~~fD~V~~~~~~~~-------------------------~~~~l~~~~~~L----kpgG~lv~d~~ 177 (232)
T 3ntv_A 135 FENVN-DKVYDMIFIDAAKAQ-------------------------SKKFFEIYTPLL----KHQGLVITDNV 177 (232)
T ss_dssp HHHHT-TSCEEEEEEETTSSS-------------------------HHHHHHHHGGGE----EEEEEEEEECT
T ss_pred HHhhc-cCCccEEEEcCcHHH-------------------------HHHHHHHHHHhc----CCCeEEEEeeC
Confidence 33 22 378999999976321 244778888876 99999988544
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=117.56 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=99.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.++.+|||+|||+|..+..+++. +.+.|+++|+++.+++.+++++...|+.++.+...|+.... .+.||.|++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~fD~i~~ 131 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----DGKFDLIVA 131 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC----CSCEEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC----CCCceEEEE
Confidence 568899999999999999988764 34689999999999999999999999988999999987653 278999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEE
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l 335 (384)
++|. ....+++..+.++| ||||++++++... +..+.+...+++.++++
T Consensus 132 ~~~~-------------------------~~~~~~l~~~~~~L----~~gG~l~~~~~~~---~~~~~~~~~~~~~Gf~~ 179 (205)
T 3grz_A 132 NILA-------------------------EILLDLIPQLDSHL----NEDGQVIFSGIDY---LQLPKIEQALAENSFQI 179 (205)
T ss_dssp ESCH-------------------------HHHHHHGGGSGGGE----EEEEEEEEEEEEG---GGHHHHHHHHHHTTEEE
T ss_pred CCcH-------------------------HHHHHHHHHHHHhc----CCCCEEEEEecCc---ccHHHHHHHHHHcCCce
Confidence 8761 11245666667665 9999999876543 34556667777888887
Q ss_pred eec
Q 016730 336 VPC 338 (384)
Q Consensus 336 ~~~ 338 (384)
+..
T Consensus 180 ~~~ 182 (205)
T 3grz_A 180 DLK 182 (205)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-12 Score=113.62 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=110.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.+.++.+|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++...|+.++.+..+|+..++ +..++
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 106 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP--LPDNT 106 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS--SCSSC
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC--CCCCC
Confidence 3445567889999999999999999999987555799999999999999999999999989999999998765 33478
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc---------cc
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT---------EN 320 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~---------EN 320 (384)
||.|++... +. +... ...+|..+.++| ||||++++++++.... -+
T Consensus 107 fD~v~~~~~------l~------~~~~----------~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~ 160 (219)
T 3dh0_A 107 VDFIFMAFT------FH------ELSE----------PLKFLEELKRVA----KPFAYLAIIDWKKEERDKGPPPEEVYS 160 (219)
T ss_dssp EEEEEEESC------GG------GCSS----------HHHHHHHHHHHE----EEEEEEEEEEECSSCCSSSCCGGGSCC
T ss_pred eeEEEeehh------hh------hcCC----------HHHHHHHHHHHh----CCCeEEEEEEecccccccCCchhcccC
Confidence 999998533 11 1111 245788888886 9999999988664432 23
Q ss_pred HHHHHHHHhcCCCEEeec
Q 016730 321 EAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 321 e~vv~~~l~~~~~~l~~~ 338 (384)
.+.+..++++.+++++..
T Consensus 161 ~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 161 EWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 566777888889887664
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=124.23 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
++++++|++|||+|||||+.|..+++... .++|+++|+|+.+++.+++++++.|+.++.++++|+..++ ++.||+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----d~~FDv 191 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----GLEFDV 191 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----GCCCSE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----CCCcCE
Confidence 45778999999999999998866555443 4799999999999999999999999988999999998865 278999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|++++- + | ...++++.+.+.| ||||+|+..+
T Consensus 192 V~~~a~-----~----~----------------d~~~~l~el~r~L----kPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAAL-----A----E----------------PKRRVFRNIHRYV----DTETRIIYRT 222 (298)
T ss_dssp EEECTT-----C----S----------------CHHHHHHHHHHHC----CTTCEEEEEE
T ss_pred EEECCC-----c----c----------------CHHHHHHHHHHHc----CCCcEEEEEc
Confidence 998542 1 1 1245778888875 9999999875
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=128.29 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=112.1
Q ss_pred cccccceEEEeCCcCcc------hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc
Q 016730 153 PEYMAGFYMLQSASSFL------PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (384)
Q Consensus 153 ~~~~~G~~~~Qd~ss~l------~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~ 226 (384)
+.++.|+-..|.++..- ...++ ..+|.+|||+|||+|+.+..++.... .+.|+|+|+|+.+++.+++|+++.
T Consensus 187 ~l~~rgyr~~~~~a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~ 264 (373)
T 3tm4_A 187 SLHKRPWRVYDHPAHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAA 264 (373)
T ss_dssp CTTCCTTCCSCCTTCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHT
T ss_pred ccccCCcccccCCCCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHc
Confidence 55667765555544321 22333 67899999999999999998887653 358999999999999999999999
Q ss_pred CC-ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 227 GV-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 227 g~-~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
|+ .++.+.++|+..++.. .+.||+|++|||+.-. ......+..++.+++..+.+. | |
T Consensus 265 gl~~~i~~~~~D~~~~~~~--~~~fD~Ii~npPyg~r--------------~~~~~~~~~ly~~~~~~l~r~----l--~ 322 (373)
T 3tm4_A 265 GVLDKIKFIQGDATQLSQY--VDSVDFAISNLPYGLK--------------IGKKSMIPDLYMKFFNELAKV----L--E 322 (373)
T ss_dssp TCGGGCEEEECCGGGGGGT--CSCEEEEEEECCCC--------------------CCHHHHHHHHHHHHHHH----E--E
T ss_pred CCCCceEEEECChhhCCcc--cCCcCEEEECCCCCcc--------------cCcchhHHHHHHHHHHHHHHH----c--C
Confidence 99 5799999999987632 3689999999996210 011112345567788877775 4 7
Q ss_pred cEEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 306 GYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 306 G~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
|.++|.|| |.+.++..+.+.+++...
T Consensus 323 g~~~~i~~------~~~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 323 KRGVFITT------EKKAIEEAIAENGFEIIH 348 (373)
T ss_dssp EEEEEEES------CHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEC------CHHHHHHHHHHcCCEEEE
Confidence 88899988 345556666777777654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=121.33 Aligned_cols=131 Identities=16% Similarity=0.082 Sum_probs=99.3
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~V 253 (384)
.+.++.+|||+|||+|..+..++...+ .+.|+++|+|+.+++.++++++++|+.++.++++|+.+++.. ...++||.|
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence 345788999999999999999988654 479999999999999999999999998899999998765421 013689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
++++. . . ...++..+.++| ||||++++..+....+|-++. ...++..++
T Consensus 146 ~~~~~----------~------~----------~~~~l~~~~~~L----kpgG~l~~~~g~~~~~~~~~~-~~~l~~~g~ 194 (240)
T 1xdz_A 146 TARAV----------A------R----------LSVLSELCLPLV----KKNGLFVALKAASAEEELNAG-KKAITTLGG 194 (240)
T ss_dssp EEECC----------S------C----------HHHHHHHHGGGE----EEEEEEEEEECC-CHHHHHHH-HHHHHHTTE
T ss_pred EEecc----------C------C----------HHHHHHHHHHhc----CCCCEEEEEeCCCchHHHHHH-HHHHHHcCC
Confidence 98652 0 0 245778888876 999999998877655544433 345566777
Q ss_pred EEee
Q 016730 334 KLVP 337 (384)
Q Consensus 334 ~l~~ 337 (384)
+++.
T Consensus 195 ~~~~ 198 (240)
T 1xdz_A 195 ELEN 198 (240)
T ss_dssp EEEE
T ss_pred eEeE
Confidence 6654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=114.52 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=96.4
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.+.++.+|||+|||+|..+..++.. +.+.|+|+|+++.+++.+++|++..|+ ++.++++|+..++ ..||.|+
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~D~v~ 117 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----SRVDIVI 117 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----CCCSEEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----CCCCEEE
Confidence 4567899999999999999988876 235899999999999999999999988 8999999988753 4799999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+|||+... ++. ...+++..+.+. + || +|++| +.+.++.+.+..+++..+++
T Consensus 118 ~~~p~~~~---~~~-----------------~~~~~l~~~~~~----l--~~--~~~~~-~~~~~~~~~~~~~l~~~g~~ 168 (207)
T 1wy7_A 118 MNPPFGSQ---RKH-----------------ADRPFLLKAFEI----S--DV--VYSIH-LAKPEVRRFIEKFSWEHGFV 168 (207)
T ss_dssp ECCCCSSS---STT-----------------TTHHHHHHHHHH----C--SE--EEEEE-ECCHHHHHHHHHHHHHTTEE
T ss_pred EcCCCccc---cCC-----------------chHHHHHHHHHh----c--Cc--EEEEE-eCCcCCHHHHHHHHHHCCCe
Confidence 99996332 111 113457777776 2 43 67777 33556777777778877776
Q ss_pred Eee
Q 016730 335 LVP 337 (384)
Q Consensus 335 l~~ 337 (384)
+..
T Consensus 169 ~~~ 171 (207)
T 1wy7_A 169 VTH 171 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=121.30 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=99.9
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-C--CceEEEEecCCCCccccc
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-G--VTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g--~~~v~~~~~D~~~~~~~~ 245 (384)
..+..+++.+|.+|||+|||+|..+.+++..+++.+.|+++|+++.+++.+++|++.. | ..++.+..+|+...+ +
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~ 167 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--L 167 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--C
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--C
Confidence 3445567889999999999999999999998765689999999999999999999988 7 678999999987753 2
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
..+.||+|++|+| +| .++|.++.+.| +|||++++++++. +.....++
T Consensus 168 ~~~~~D~v~~~~~---------~~------------------~~~l~~~~~~L----~pgG~l~~~~~~~--~~~~~~~~ 214 (280)
T 1i9g_A 168 PDGSVDRAVLDML---------AP------------------WEVLDAVSRLL----VAGGVLMVYVATV--TQLSRIVE 214 (280)
T ss_dssp CTTCEEEEEEESS---------CG------------------GGGHHHHHHHE----EEEEEEEEEESSH--HHHHHHHH
T ss_pred CCCceeEEEECCc---------CH------------------HHHHHHHHHhC----CCCCEEEEEeCCH--HHHHHHHH
Confidence 2468999999877 11 13577788876 9999999988754 22334444
Q ss_pred HHHhcCCC
Q 016730 326 YALKKRDV 333 (384)
Q Consensus 326 ~~l~~~~~ 333 (384)
.+.++.++
T Consensus 215 ~l~~~~~f 222 (280)
T 1i9g_A 215 ALRAKQCW 222 (280)
T ss_dssp HHHHHSSB
T ss_pred HHHhcCCc
Confidence 44332443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=117.23 Aligned_cols=112 Identities=16% Similarity=0.054 Sum_probs=84.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.+++|++..|+.++.++++|+..+... ..+.||+|++|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~fD~V~~~~ 130 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-KGTPHNIVFVDP 130 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-CCCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh-cCCCCCEEEECC
Confidence 68899999999999998877652 258999999999999999999999998899999998764221 236899999999
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
|+. .+ . ..+++....+. +.|+|||++++++|+...
T Consensus 131 p~~-~~------------~----------~~~~l~~l~~~--~~L~pgG~l~i~~~~~~~ 165 (202)
T 2fpo_A 131 PFR-RG------------L----------LEETINLLEDN--GWLADEALIYVESEVENG 165 (202)
T ss_dssp SSS-TT------------T----------HHHHHHHHHHT--TCEEEEEEEEEEEEGGGC
T ss_pred CCC-CC------------c----------HHHHHHHHHhc--CccCCCcEEEEEECCCcc
Confidence 942 11 0 11233444331 114999999999887543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-12 Score=114.49 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=85.5
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHcc----CCceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcc---
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMK----NTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELP--- 242 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~----~~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~--- 242 (384)
.++++.+|||+|||+|..+.++++..+ +.+.|+++|+++.+++.+++++++.| ..++.+..+|+....
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 477899999999999999999999875 45799999999999999999999998 678999999987643
Q ss_pred -cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 243 -KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 243 -~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.. .++||+|++++++.. ++..+.+.| ||||+++.+.-
T Consensus 157 ~~~--~~~fD~I~~~~~~~~----------------------------~~~~~~~~L----kpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKE--LGLFDAIHVGASASE----------------------------LPEILVDLL----AENGKLIIPIE 194 (227)
T ss_dssp HHH--HCCEEEEEECSBBSS----------------------------CCHHHHHHE----EEEEEEEEEEE
T ss_pred Ccc--CCCcCEEEECCchHH----------------------------HHHHHHHhc----CCCcEEEEEEc
Confidence 22 268999999988531 224455664 99999987653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=114.74 Aligned_cols=133 Identities=14% Similarity=0.207 Sum_probs=101.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+.++.+|||+|||+|..+..+++..+ +.|+++|+|+..++.+++++...|+.+ +.++++|+..++. ..++||+|
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~v 118 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--QNEELDLI 118 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--CTTCEEEE
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--CCCCEEEE
Confidence 456889999999999999999999864 489999999999999999999999876 9999999987762 34789999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc-------------
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN------------- 320 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN------------- 320 (384)
++...... ... .++|..+.++| ||||++++++++......
T Consensus 119 ~~~~~l~~-------------~~~----------~~~l~~~~~~L----~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (257)
T 3f4k_A 119 WSEGAIYN-------------IGF----------ERGMNEWSKYL----KKGGFIAVSEASWFTSERPAEIEDFWMDAYP 171 (257)
T ss_dssp EEESCSCC-------------CCH----------HHHHHHHHTTE----EEEEEEEEEEEEESSSCCCHHHHHHHHHHCT
T ss_pred EecChHhh-------------cCH----------HHHHHHHHHHc----CCCcEEEEEEeeccCCCChHHHHHHHHHhCC
Confidence 98643211 111 34678888876 999999999876444322
Q ss_pred ----HHHHHHHHhcCCCEEeec
Q 016730 321 ----EAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 321 ----e~vv~~~l~~~~~~l~~~ 338 (384)
...+..+++..|++++..
T Consensus 172 ~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 172 EISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp TCCBHHHHHHHHHHTTEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCeEEEE
Confidence 223345566677776653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-12 Score=115.48 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=93.3
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D 237 (384)
|.+..+..........+.++++.+|||+|||+|..+.+++.. .+.|+++|+++.+++.++++++++|+.++.+..+|
T Consensus 57 ~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 133 (210)
T 3lbf_A 57 GQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD 133 (210)
T ss_dssp SCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred CCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECC
Confidence 444444433344556677889999999999999999999987 37899999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+...... .++||+|+++.++... | ..+.+.| ||||+++.+...
T Consensus 134 ~~~~~~~--~~~~D~i~~~~~~~~~------~----------------------~~~~~~L----~pgG~lv~~~~~ 176 (210)
T 3lbf_A 134 GWQGWQA--RAPFDAIIVTAAPPEI------P----------------------TALMTQL----DEGGILVLPVGE 176 (210)
T ss_dssp GGGCCGG--GCCEEEEEESSBCSSC------C----------------------THHHHTE----EEEEEEEEEECS
T ss_pred cccCCcc--CCCccEEEEccchhhh------h----------------------HHHHHhc----ccCcEEEEEEcC
Confidence 8775432 3789999998654211 1 1234554 999999988765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=118.57 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=105.3
Q ss_pred hhhhcC-CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC
Q 016730 170 PVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 170 ~~~~L~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 247 (384)
+...+. ++++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...|+. ++.+..+|+..++ +..
T Consensus 108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~ 183 (312)
T 3vc1_A 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--FDK 183 (312)
T ss_dssp HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--CCT
T ss_pred HHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--CCC
Confidence 344555 7789999999999999999999876 268999999999999999999999986 6999999998875 334
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc--------
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE-------- 319 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E-------- 319 (384)
+.||+|++.-. + .+. . +.++|..+.++| ||||++++++.......
T Consensus 184 ~~fD~V~~~~~------l------~~~-~----------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~ 236 (312)
T 3vc1_A 184 GAVTASWNNES------T------MYV-D----------LHDLFSEHSRFL----KVGGRYVTITGCWNPRYGQPSKWVS 236 (312)
T ss_dssp TCEEEEEEESC------G------GGS-C----------HHHHHHHHHHHE----EEEEEEEEEEEEECTTTCSCCHHHH
T ss_pred CCEeEEEECCc------h------hhC-C----------HHHHHHHHHHHc----CCCcEEEEEEccccccccchhHHHH
Confidence 78999997321 1 111 1 456788888886 99999999886544321
Q ss_pred -----------cHHHHHHHHhcCCCEEeec
Q 016730 320 -----------NEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 320 -----------Ne~vv~~~l~~~~~~l~~~ 338 (384)
..+.+..++++.|++++..
T Consensus 237 ~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 237 QINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp HHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred HHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 2344556667778877654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=111.55 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=94.0
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCccccc
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKVL 245 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~~~~~ 245 (384)
......+.+.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...|+.+ +.+...|+.....
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 116 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-- 116 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--
Confidence 34455566778999999999999999888776 4689999999999999999999999987 9999999877432
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.+.||.|++++|... ... ...+++..+.+.| +|||+++.++++.
T Consensus 117 -~~~~D~v~~~~~~~~--------------~~~-------~~~~~l~~~~~~L----~~gG~l~~~~~~~ 160 (194)
T 1dus_A 117 -DRKYNKIITNPPIRA--------------GKE-------VLHRIIEEGKELL----KDNGEIWVVIQTK 160 (194)
T ss_dssp -TSCEEEEEECCCSTT--------------CHH-------HHHHHHHHHHHHE----EEEEEEEEEEEST
T ss_pred -cCCceEEEECCCccc--------------chh-------HHHHHHHHHHHHc----CCCCEEEEEECCC
Confidence 368999999987321 111 2345778888876 9999999988765
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=120.41 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=88.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--------CCceEEEEecCCCC-cccccCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--------GVTNTIVCNYDGNE-LPKVLGL 247 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--------g~~~v~~~~~D~~~-~~~~~~~ 247 (384)
+++.+|||+|||+|+.+..++...+ .+.|+|+|+|+.+++.++++++.+ |+.|+.++.+|+.. ++..+..
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 4788999999999999999998864 368999999999999999999987 88899999999987 4444445
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
..||.|++.-|..-. + ......++ .+.+++..+.++| ||||.|+++|
T Consensus 127 ~~~d~v~~~~p~p~~---------k---~~~~~~r~--~~~~~l~~~~~~L----kpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHF---------K---QRKHKARI--ITNTLLSEYAYVL----KEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------------------CSSC--CCHHHHHHHHHHE----EEEEEEEEEE
T ss_pred cccCEEEEECCCccc---------c---cchhHHhh--ccHHHHHHHHHHc----CCCCEEEEEe
Confidence 789999877553111 1 00000000 1356888888886 9999999866
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-12 Score=115.78 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=94.6
Q ss_pred CCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 151 ~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..++|.......|..........+.+.++.+|||+|||+|..+..+++.. +.|+++|+|+.+++.+++++...|+.+
T Consensus 10 ~~~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~ 86 (260)
T 1vl5_A 10 HHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQ 86 (260)
T ss_dssp -------------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred cceeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence 34567677777777776667777888899999999999999998887764 489999999999999999999999989
Q ss_pred EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 231 v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
+.+..+|+..++ +..+.||+|++... +.+...+ ..+|.++.++| ||||+++.
T Consensus 87 v~~~~~d~~~l~--~~~~~fD~V~~~~~------------l~~~~d~----------~~~l~~~~r~L----kpgG~l~~ 138 (260)
T 1vl5_A 87 VEYVQGDAEQMP--FTDERFHIVTCRIA------------AHHFPNP----------ASFVSEAYRVL----KKGGQLLL 138 (260)
T ss_dssp EEEEECCC-CCC--SCTTCEEEEEEESC------------GGGCSCH----------HHHHHHHHHHE----EEEEEEEE
T ss_pred eEEEEecHHhCC--CCCCCEEEEEEhhh------------hHhcCCH----------HHHHHHHHHHc----CCCCEEEE
Confidence 999999998865 33478999998532 1111111 24678888876 99999998
Q ss_pred Eec
Q 016730 311 STC 313 (384)
Q Consensus 311 sTC 313 (384)
++.
T Consensus 139 ~~~ 141 (260)
T 1vl5_A 139 VDN 141 (260)
T ss_dssp EEE
T ss_pred EEc
Confidence 754
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-12 Score=115.52 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=97.9
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
|++++...+..+++.++.+|||+|||+|..+..+++.. ..|+++|+++.+++.+++++...|+.++.+..+|+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 82 (239)
T 1xxl_A 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 82 (239)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC
T ss_pred cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC
Confidence 66777788888999999999999999999998887763 489999999999999999999999989999999998765
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+..+.||.|++... + .+... ...+|..+.++| ||||+++.++..
T Consensus 83 --~~~~~fD~v~~~~~------l------~~~~~----------~~~~l~~~~~~L----kpgG~l~~~~~~ 126 (239)
T 1xxl_A 83 --FPDDSFDIITCRYA------A------HHFSD----------VRKAVREVARVL----KQDGRFLLVDHY 126 (239)
T ss_dssp --SCTTCEEEEEEESC------G------GGCSC----------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred --CCCCcEEEEEECCc------h------hhccC----------HHHHHHHHHHHc----CCCcEEEEEEcC
Confidence 33478999998532 1 11111 135678888876 999999987654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=114.33 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=96.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCC-cccccC---CCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE-LPKVLG---LNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~-~~~~~~---~~~fD~ 252 (384)
++.+|||+|||+|..+..++...++ +.|+++|+++.+++.+++|++.+|+.+ +.++++|+.. +...+. .+.||.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 5789999999999999999887653 789999999999999999999999975 9999999775 222222 157999
Q ss_pred EEEcCCCCCCCc----C-CC-----CchhhccC------CHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGV----I-SK-----DESVKTSK------SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~----~-~r-----~p~~~~~~------~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|++|||+...+. + ++ .|...+.. .+... + .....++..+..++ +++|.+. +.+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~--l-~~~~~~~~~~~~~l----~~~g~~~---~~~~ 213 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGE--L-EFVKRIIHDSLQLK----KRLRWYS---CMLG 213 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTH--H-HHHHHHHHHHHHHG----GGBSCEE---EEES
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCE--E-EEEHHHHHHHHhcc----cceEEEE---ECCC
Confidence 999999976651 1 01 11111110 01111 1 12234666666665 8888664 3344
Q ss_pred ccccHHHHHHHHhcCCCEEe
Q 016730 317 VTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 317 ~~ENe~vv~~~l~~~~~~l~ 336 (384)
..++.+.+..++++.+++-+
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v 233 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKV 233 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEE
T ss_pred ChhHHHHHHHHHHHcCCCce
Confidence 45564556667777776443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-12 Score=116.54 Aligned_cols=132 Identities=19% Similarity=0.229 Sum_probs=100.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+.++.+|||+|||+|..+..+++. ..+.|+++|+|+..++.++++++..|+.+ +.++.+|+..++. ..++||+|+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~i~ 119 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--RNEELDLIW 119 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--CTTCEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--CCCCEEEEE
Confidence 568999999999999999998887 34699999999999999999999999864 9999999988762 347899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc--------------
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN-------------- 320 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN-------------- 320 (384)
+..+.. +. .. .++|..+.++| ||||+++.++++....+.
T Consensus 120 ~~~~~~------------~~-~~----------~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (267)
T 3kkz_A 120 SEGAIY------------NI-GF----------ERGLNEWRKYL----KKGGYLAVSECSWFTDERPAEINDFWMDAYPE 172 (267)
T ss_dssp ESSCGG------------GT-CH----------HHHHHHHGGGE----EEEEEEEEEEEEESSSCCCHHHHHHHHHHCTT
T ss_pred EcCCce------------ec-CH----------HHHHHHHHHHc----CCCCEEEEEEeeecCCCChHHHHHHHHHhCCC
Confidence 865421 11 11 34677888876 999999999987554432
Q ss_pred ---HHHHHHHHhcCCCEEeec
Q 016730 321 ---EAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 321 ---e~vv~~~l~~~~~~l~~~ 338 (384)
...+...+++.|++++..
T Consensus 173 ~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 173 IDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp CEEHHHHHHHHHHTTEEEEEE
T ss_pred CCCHHHHHHHHHHCCCEEEEE
Confidence 223334556677777654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=122.86 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=77.5
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.+...+.+++|++|||+|||+|..+..+++.....++|+++|+++.+++.++++++..|+.++.+..+|+...... .+
T Consensus 66 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~--~~ 143 (317)
T 1dl5_A 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE--FS 143 (317)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--GC
T ss_pred HHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc--CC
Confidence 3445567889999999999999999999998764578999999999999999999999998999999998875332 26
Q ss_pred CCCEEEEcCCCCC
Q 016730 249 TVDRVLLDAPCSG 261 (384)
Q Consensus 249 ~fD~VllDaPCSg 261 (384)
+||+|++++++..
T Consensus 144 ~fD~Iv~~~~~~~ 156 (317)
T 1dl5_A 144 PYDVIFVTVGVDE 156 (317)
T ss_dssp CEEEEEECSBBSC
T ss_pred CeEEEEEcCCHHH
Confidence 8999999988643
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=114.03 Aligned_cols=127 Identities=12% Similarity=0.127 Sum_probs=98.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+++|++|||+|||+|..++.++...+ .+.|+|+|+++..++.+++|++++|+.+ +.+..+|+...... ...||.|+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--~~~~D~Iv 89 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--TDQVSVIT 89 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--CcCCCEEE
Confidence 45789999999999999999888643 4689999999999999999999999975 99999998643211 13699988
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+ .|.| ..+-.+||..+...| +++|++|.+.- .+.+.+...|.+++|.
T Consensus 90 i----aG~G--------------------g~~i~~Il~~~~~~L----~~~~~lVlq~~-----~~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 90 I----AGMG--------------------GRLIARILEEGLGKL----ANVERLILQPN-----NREDDLRIWLQDHGFQ 136 (225)
T ss_dssp E----EEEC--------------------HHHHHHHHHHTGGGC----TTCCEEEEEES-----SCHHHHHHHHHHTTEE
T ss_pred E----cCCC--------------------hHHHHHHHHHHHHHh----CCCCEEEEECC-----CCHHHHHHHHHHCCCE
Confidence 6 1333 122356888888875 99999998654 3677777777888888
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
++..
T Consensus 137 i~~e 140 (225)
T 3kr9_A 137 IVAE 140 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=124.57 Aligned_cols=125 Identities=9% Similarity=0.013 Sum_probs=94.9
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc---eEEEEecCCCCccccc
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNELPKVL 245 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~---~v~~~~~D~~~~~~~~ 245 (384)
+....+...++.+|||+|||+|..+..++...+ ...|+++|+|+.+++.+++|++.+|+. ++.+...|+... +
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~---~ 288 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG---V 288 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT---C
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc---C
Confidence 344556667789999999999999999999864 379999999999999999999999976 488889998763 2
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
..++||.|++|||......+.+ ....+++..+.+.| ||||+++++.-+..+.
T Consensus 289 ~~~~fD~Ii~nppfh~~~~~~~-----------------~~~~~~l~~~~~~L----kpgG~l~iv~n~~~~~ 340 (375)
T 4dcm_A 289 EPFRFNAVLCNPPFHQQHALTD-----------------NVAWEMFHHARRCL----KINGELYIVANRHLDY 340 (375)
T ss_dssp CTTCEEEEEECCCC-------C-----------------CHHHHHHHHHHHHE----EEEEEEEEEEETTSCH
T ss_pred CCCCeeEEEECCCcccCcccCH-----------------HHHHHHHHHHHHhC----CCCcEEEEEEECCcCH
Confidence 3468999999999632211111 01235788888886 9999999977655443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-13 Score=121.58 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=90.7
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 247 (384)
+...++...++.+|||+|||+|..|.+++..++..+.|+++|+++.+++.+++++++.|+. ++.++.+|+........
T Consensus 47 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 125 (210)
T 3c3p_A 47 LLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQR- 125 (210)
T ss_dssp HHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCC-
T ss_pred HHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCC-
Confidence 3333344446789999999999999999998765689999999999999999999999986 48999999876422222
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+ ||.|++|+++. .+..++..+.++| ||||++++.++..
T Consensus 126 ~-fD~v~~~~~~~-------------------------~~~~~l~~~~~~L----kpgG~lv~~~~~~ 163 (210)
T 3c3p_A 126 D-IDILFMDCDVF-------------------------NGADVLERMNRCL----AKNALLIAVNALR 163 (210)
T ss_dssp S-EEEEEEETTTS-------------------------CHHHHHHHHGGGE----EEEEEEEEESSSS
T ss_pred C-CCEEEEcCChh-------------------------hhHHHHHHHHHhc----CCCeEEEEECccc
Confidence 5 99999996531 1235677888876 9999999977654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=111.12 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=84.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.+++|++..|+. ++.++.+|+.+..... .+.||+|+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~fD~i~ 105 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-TGRFDLVF 105 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-CSCEEEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh-cCCCCEEE
Confidence 457889999999999999988876 3468999999999999999999999985 6999999987742222 25799999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH--HchhccCCCCcEEEEEeccCC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI--DMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~--~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+|+|+.. . ...+.+.... ++ |||||++++++++-.
T Consensus 106 ~~~~~~~----------------~-------~~~~~~~~l~~~~~----L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 106 LDPPYAK----------------E-------TIVATIEALAAKNL----LSEQVMVVCETDKTV 142 (177)
T ss_dssp ECCSSHH----------------H-------HHHHHHHHHHHTTC----EEEEEEEEEEEETTC
T ss_pred ECCCCCc----------------c-------hHHHHHHHHHhCCC----cCCCcEEEEEECCcc
Confidence 9998410 0 0122333333 55 499999999887764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=114.21 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=90.1
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+.+.++.+|||+|||+|..+..+++..+ ..|+++|+++.+++.++++++..|+. ++.+..+|+..++. .+.
T Consensus 29 ~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 103 (256)
T 1nkv_A 29 GRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---NEK 103 (256)
T ss_dssp HHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---SSC
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---CCC
Confidence 4445678899999999999999999998862 58999999999999999999999985 79999999988754 378
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
||+|++.. ++..-++ ..++|..+.++| ||||+++.++...
T Consensus 104 fD~V~~~~------~~~~~~~----------------~~~~l~~~~r~L----kpgG~l~~~~~~~ 143 (256)
T 1nkv_A 104 CDVAACVG------ATWIAGG----------------FAGAEELLAQSL----KPGGIMLIGEPYW 143 (256)
T ss_dssp EEEEEEES------CGGGTSS----------------SHHHHHHHTTSE----EEEEEEEEEEEEE
T ss_pred CCEEEECC------ChHhcCC----------------HHHHHHHHHHHc----CCCeEEEEecCcc
Confidence 99999722 1111111 134677888875 9999999987543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=118.45 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=89.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-ccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-~~~~~~~~fD~Vll 255 (384)
.++.+|||+|||+|..+..+|+..++ ..|+|+|+++.+++.+++++++.|+.|+.++.+|+..+ +..+..+.||.|++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 36789999999999999999998754 68999999999999999999999999999999998874 32344578999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.-|.. +.+....+.+. .|..++..+.+.| ||||+++++|-
T Consensus 112 ~~~~p----~~~~~~~~rr~----------~~~~~l~~~~r~L----kpGG~l~i~td 151 (218)
T 3dxy_A 112 FFPDP----WHKARHNKRRI----------VQVPFAELVKSKL----QLGGVFHMATD 151 (218)
T ss_dssp ESCCC----CCSGGGGGGSS----------CSHHHHHHHHHHE----EEEEEEEEEES
T ss_pred eCCCC----ccchhhhhhhh----------hhHHHHHHHHHHc----CCCcEEEEEeC
Confidence 74421 01111111000 1235778888876 99999998873
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-11 Score=108.35 Aligned_cols=118 Identities=15% Similarity=0.078 Sum_probs=88.4
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-----eEEEEecCCCCcccc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-----NTIVCNYDGNELPKV 244 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-----~v~~~~~D~~~~~~~ 244 (384)
+...+...++.+|||+|||+|..+..+++..+ ...|+++|+|+..++.+++++...|+. ++.+..+|+...+..
T Consensus 21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 34445556788999999999999999888643 368999999999999999999888876 699999998665432
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.++||.|++... + ......+ ..++|+.+.++| ||||.++.+.+.
T Consensus 100 --~~~fD~v~~~~~------l-------~~~~~~~-------~~~~l~~~~~~L----kpgG~li~~~~~ 143 (217)
T 3jwh_A 100 --FHGYDAATVIEV------I-------EHLDLSR-------LGAFERVLFEFA----QPKIVIVTTPNI 143 (217)
T ss_dssp --GCSCSEEEEESC------G-------GGCCHHH-------HHHHHHHHHTTT----CCSEEEEEEEBH
T ss_pred --CCCcCEEeeHHH------H-------HcCCHHH-------HHHHHHHHHHHc----CCCEEEEEccCc
Confidence 268999997532 1 1112221 245778888875 999988776664
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=110.02 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=89.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-----------
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----------- 243 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----------- 243 (384)
++++.+|||+|||||+.|.++++.+++ .+.|+|+|+++.. ...++.++.+|+...+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccc
Confidence 467899999999999999999998863 5899999999831 24567888899877540
Q ss_pred ------------ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 244 ------------VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 244 ------------~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+....||.|++|.++..+|. ...+.......+.++|..+.++| ||||.++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~-----------~~~d~~~~~~~~~~~l~~~~~~L----kpgG~lv~~ 153 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN-----------KIDDHLNSCELTLSITHFMEQYI----NIGGTYIVK 153 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSC-----------HHHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC-----------cccCHHHHHHHHHHHHHHHHHHc----cCCCEEEEE
Confidence 023468999999987554442 11223334456778889998886 999999976
Q ss_pred eccCCccccHHHHHHHHhc
Q 016730 312 TCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 312 TCSi~~~ENe~vv~~~l~~ 330 (384)
+.. .++...+...++.
T Consensus 154 ~~~---~~~~~~l~~~l~~ 169 (201)
T 2plw_A 154 MYL---GSQTNNLKTYLKG 169 (201)
T ss_dssp EEC---STTHHHHHHHHHT
T ss_pred EeC---CCCHHHHHHHHHH
Confidence 533 3444444445544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=106.78 Aligned_cols=126 Identities=19% Similarity=0.269 Sum_probs=94.6
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.+.++.+|||+|||+|..+..++. ....|+++|+++.+++.++++++..|+.++.+...|+... +..+.
T Consensus 27 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 100 (183)
T 2yxd_A 27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDKLE 100 (183)
T ss_dssp HHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGGCC
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---ccCCC
Confidence 34455677899999999999999998887 3479999999999999999999999998899999998762 22268
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
||.|+++.| .+ ..+++..+.+ + |||.+++++|+. ++...+...++
T Consensus 101 ~D~i~~~~~--------~~------------------~~~~l~~~~~-----~-~gG~l~~~~~~~---~~~~~~~~~l~ 145 (183)
T 2yxd_A 101 FNKAFIGGT--------KN------------------IEKIIEILDK-----K-KINHIVANTIVL---ENAAKIINEFE 145 (183)
T ss_dssp CSEEEECSC--------SC------------------HHHHHHHHHH-----T-TCCEEEEEESCH---HHHHHHHHHHH
T ss_pred CcEEEECCc--------cc------------------HHHHHHHHhh-----C-CCCEEEEEeccc---ccHHHHHHHHH
Confidence 999999876 11 1235555554 3 999999998754 33333445556
Q ss_pred cCCCEEe
Q 016730 330 KRDVKLV 336 (384)
Q Consensus 330 ~~~~~l~ 336 (384)
+.++.+.
T Consensus 146 ~~g~~~~ 152 (183)
T 2yxd_A 146 SRGYNVD 152 (183)
T ss_dssp HTTCEEE
T ss_pred HcCCeEE
Confidence 6665543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=127.21 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=101.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC----ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT----GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~----g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
.+.++.+|||.|||+|+.+..++..+... ..|+|+|+++..++.++.|+...|+ ++.+.++|+.... ....|
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---~~~~f 202 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---LVDPV 202 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---CCCCE
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---ccCCc
Confidence 56678999999999999999999887543 6899999999999999999999998 6788889987643 23689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe-ccCCccccHHHHH-HHH
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMVTENEAVID-YAL 328 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT-CSi~~~ENe~vv~-~~l 328 (384)
|+|++|||+ |.+.. ++....+...........+..++.++++.| ||||++++.+ .++...+....+. +++
T Consensus 203 D~Ii~NPPf---g~~~~-~~~~~~~~~~~~~g~~~~~~~~l~~~~~~L----k~gG~~~~v~p~~~~~~~~~~~ir~~l~ 274 (344)
T 2f8l_A 203 DVVISDLPV---GYYPD-DENAKTFELCREEGHSFAHFLFIEQGMRYT----KPGGYLFFLVPDAMFGTSDFAKVDKFIK 274 (344)
T ss_dssp EEEEEECCC---SEESC-HHHHTTSTTCCSSSCEEHHHHHHHHHHHTE----EEEEEEEEEEEGGGGGSTTHHHHHHHHH
T ss_pred cEEEECCCC---CCcCc-hhhhhhccccCCCCcchHHHHHHHHHHHHh----CCCCEEEEEECchhcCCchHHHHHHHHH
Confidence 999999997 33321 111100000000001124556889999986 9999998887 3444444455555 444
Q ss_pred hc
Q 016730 329 KK 330 (384)
Q Consensus 329 ~~ 330 (384)
++
T Consensus 275 ~~ 276 (344)
T 2f8l_A 275 KN 276 (344)
T ss_dssp HH
T ss_pred hC
Confidence 44
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.2e-12 Score=110.42 Aligned_cols=128 Identities=19% Similarity=0.290 Sum_probs=97.4
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~ 247 (384)
.....+.+.++.+|||+|||+|..+..++... ..|+++|+++.+++.+++++...|+ .++.+.+.|+...... .
T Consensus 24 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~ 98 (192)
T 1l3i_A 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK--I 98 (192)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT--S
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc--C
Confidence 34445677889999999999999998888764 6899999999999999999999998 6788888887652111 1
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+.||.|+++.+.. + ...++..+.+.| +|||++++++++. ++...+..+
T Consensus 99 ~~~D~v~~~~~~~-------~------------------~~~~l~~~~~~l----~~gG~l~~~~~~~---~~~~~~~~~ 146 (192)
T 1l3i_A 99 PDIDIAVVGGSGG-------E------------------LQEILRIIKDKL----KPGGRIIVTAILL---ETKFEAMEC 146 (192)
T ss_dssp CCEEEEEESCCTT-------C------------------HHHHHHHHHHTE----EEEEEEEEEECBH---HHHHHHHHH
T ss_pred CCCCEEEECCchH-------H------------------HHHHHHHHHHhc----CCCcEEEEEecCc---chHHHHHHH
Confidence 5799999986520 0 145778888876 9999999998864 344444555
Q ss_pred HhcCCC
Q 016730 328 LKKRDV 333 (384)
Q Consensus 328 l~~~~~ 333 (384)
+++.++
T Consensus 147 l~~~g~ 152 (192)
T 1l3i_A 147 LRDLGF 152 (192)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 565554
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=111.66 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=99.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+++|++|||+|||+|..++.++... ..+.|+|+|+++..++.+++|++++|+.+ +.+..+|+...... ...||.|+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~--~~~~D~Iv 95 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE--ADNIDTIT 95 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc--ccccCEEE
Confidence 4678999999999999999988863 34689999999999999999999999975 99999998775432 23799987
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+ .|.| ..+-.+||..+...+ +++|+||.+.- .+++.|...|..++|.
T Consensus 96 i----aGmG--------------------g~lI~~IL~~~~~~l----~~~~~lIlqp~-----~~~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 96 I----CGMG--------------------GRLIADILNNDIDKL----QHVKTLVLQPN-----NREDDLRKWLAANDFE 142 (230)
T ss_dssp E----EEEC--------------------HHHHHHHHHHTGGGG----TTCCEEEEEES-----SCHHHHHHHHHHTTEE
T ss_pred E----eCCc--------------------hHHHHHHHHHHHHHh----CcCCEEEEECC-----CChHHHHHHHHHCCCE
Confidence 6 2333 123356788888775 99999998763 3577777778888888
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
++..
T Consensus 143 i~~E 146 (230)
T 3lec_A 143 IVAE 146 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=114.61 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=88.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+++|.+|||+|||+|..+..+++.... ..+|+|+|+|+.+++.++++++..+.. ++.++++|+.+++. +.||.|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----CSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----cccccc
Confidence 468999999999999999999988753 348999999999999999999988874 69999999988753 579999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++.- ++ .+ ..+.+ ...+|.++.+.| ||||+|+.+.-...
T Consensus 144 ~~~~------~l------~~-~~~~~-------~~~~l~~i~~~L----kpGG~lii~e~~~~ 182 (261)
T 4gek_A 144 VLNF------TL------QF-LEPSE-------RQALLDKIYQGL----NPGGALVLSEKFSF 182 (261)
T ss_dssp EEES------CG------GG-SCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEBCC
T ss_pred eeee------ee------ee-cCchh-------HhHHHHHHHHHc----CCCcEEEEEeccCC
Confidence 8732 11 11 12221 235788888886 99999998865543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-11 Score=113.76 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=93.6
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 248 (384)
....+.+++|.+|||+|||+|..+..+++..+ ..|+++|+|+.+++.+++++...|+. ++.+..+|+..+ .+
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 136 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----DE 136 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----CC
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----CC
Confidence 34455678999999999999999999998864 68999999999999999999999987 799999998765 37
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
.||+|++... +..-|+..-....+ ....++..+.++| ||||+++..+.+...
T Consensus 137 ~fD~v~~~~~------~~~~~d~~~~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 137 PVDRIVSLGA------FEHFADGAGDAGFE-------RYDTFFKKFYNLT----PDDGRMLLHTITIPD 188 (302)
T ss_dssp CCSEEEEESC------GGGTTCCSSCCCTT-------HHHHHHHHHHHSS----CTTCEEEEEEEECCC
T ss_pred CccEEEEcch------HHhcCccccccchh-------HHHHHHHHHHHhc----CCCcEEEEEEEeccC
Confidence 8999998532 22111100000011 2245778888875 999999998887643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=120.22 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=87.1
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----------CceEEEEecC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----------VTNTIVCNYD 237 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----------~~~v~~~~~D 237 (384)
.....+++.+|.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++|+..+| ..++.+..+|
T Consensus 96 ~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 34556678899999999999999999999987656899999999999999999999754 3579999999
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+......+..+.||+|++|+|. |. .++..+.+.| ||||+|+..+
T Consensus 176 ~~~~~~~~~~~~fD~V~~~~~~---------~~------------------~~l~~~~~~L----kpgG~lv~~~ 219 (336)
T 2b25_A 176 ISGATEDIKSLTFDAVALDMLN---------PH------------------VTLPVFYPHL----KHGGVCAVYV 219 (336)
T ss_dssp TTCCC-------EEEEEECSSS---------TT------------------TTHHHHGGGE----EEEEEEEEEE
T ss_pred hHHcccccCCCCeeEEEECCCC---------HH------------------HHHHHHHHhc----CCCcEEEEEe
Confidence 9876422333579999999872 11 1567777775 9999998544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=111.88 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=85.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-ccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~fD~ 252 (384)
+.+++|++|||+|||+|..+.++++..++.+.|+|+|+++.+++.+.+++++. .++.++.+|+..... ....+.||+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEE
Confidence 45678999999999999999999998755579999999999998888888775 678999999987421 112368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|++|+| .|+ ....++.++.+.| ||||+++.+.
T Consensus 151 V~~~~~---------~~~---------------~~~~~~~~~~~~L----kpgG~l~i~~ 182 (233)
T 2ipx_A 151 IFADVA---------QPD---------------QTRIVALNAHTFL----RNGGHFVISI 182 (233)
T ss_dssp EEECCC---------CTT---------------HHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred EEEcCC---------Ccc---------------HHHHHHHHHHHHc----CCCeEEEEEE
Confidence 999987 111 1234566777775 9999998854
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.1e-12 Score=114.24 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccC-----CceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcccc
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKN-----TGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKV 244 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~-----~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~~~ 244 (384)
.++++.+|||+|||+|..+..+++..+. .+.|+++|+++.+++.+++++.+.| ..++.+..+|+.....
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP- 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC-
Confidence 4678999999999999999999997753 3689999999999999999999887 6789999999876321
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..+.||+|++++++.. ++..+.+.| ||||+++.++-
T Consensus 160 -~~~~fD~I~~~~~~~~----------------------------~~~~~~~~L----kpgG~lvi~~~ 195 (227)
T 1r18_A 160 -PNAPYNAIHVGAAAPD----------------------------TPTELINQL----ASGGRLIVPVG 195 (227)
T ss_dssp -GGCSEEEEEECSCBSS----------------------------CCHHHHHTE----EEEEEEEEEES
T ss_pred -cCCCccEEEECCchHH----------------------------HHHHHHHHh----cCCCEEEEEEe
Confidence 1268999999887521 113455664 99999998764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.4e-12 Score=115.92 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=89.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHc---CCce----------------------
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRM---GVTN---------------------- 230 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~---g~~~---------------------- 230 (384)
.++.+|||+|||+|..+..++..+ .....|+|+|+|+.+++.+++|+... |+.+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 467899999999999999998873 12368999999999999999999877 6533
Q ss_pred ----EE-------------EEecCCCCcccc---cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHH
Q 016730 231 ----TI-------------VCNYDGNELPKV---LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL 290 (384)
Q Consensus 231 ----v~-------------~~~~D~~~~~~~---~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~i 290 (384)
+. +.++|+...... .....||+|++|||+.....+.+. .....+..+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~-------------~~~~~~~~~ 196 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQ-------------VPGQPVAGL 196 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSC-------------CCHHHHHHH
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccccccc-------------ccccHHHHH
Confidence 55 888998764311 023489999999996443322110 112345678
Q ss_pred HHHHHHchhccCCCCcEEEEEeccC
Q 016730 291 ILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 291 L~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+..+.++| ||||+++++.++.
T Consensus 197 l~~~~~~L----kpgG~l~~~~~~~ 217 (250)
T 1o9g_A 197 LRSLASAL----PAHAVIAVTDRSR 217 (250)
T ss_dssp HHHHHHHS----CTTCEEEEEESSS
T ss_pred HHHHHHhc----CCCcEEEEeCcch
Confidence 88888885 9999999966553
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-13 Score=126.53 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=93.4
Q ss_pred EEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 160 ~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
|.++......++..+++.++++|||+|||+|..|..+++. .+.|+|+|+|+.+++.+++++...|..++.++++|+.
T Consensus 24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~ 100 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI 100 (299)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC
T ss_pred eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh
Confidence 4445544555667778889999999999999999988875 3689999999999999999999888888999999998
Q ss_pred CcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHH-----------HHHHHHHHHHHchhccCCCCcEE
Q 016730 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY-----------LQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 240 ~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~-----------~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
.++. ..||+|++|+|+..+ ...+..+.. .|+ +.+.+++ +++|..
T Consensus 101 ~~~~----~~~D~Vv~n~py~~~--------------~~~~~~ll~~~~~~~~~~l~~Q~---e~a~rll----a~~G~~ 155 (299)
T 2h1r_A 101 KTVF----PKFDVCTANIPYKIS--------------SPLIFKLISHRPLFKCAVLMFQK---EFAERML----ANVGDS 155 (299)
T ss_dssp SSCC----CCCSEEEEECCGGGH--------------HHHHHHHHHCSSCCSEEEEEEEH---HHHHHHT----CCTTST
T ss_pred hCCc----ccCCEEEEcCCcccc--------------cHHHHHHHhcCCccceeeehHHH---HHHHHHh----cCCCCc
Confidence 7652 579999999996432 111111111 011 3355554 999999
Q ss_pred EEEeccCC
Q 016730 309 VYSTCSIM 316 (384)
Q Consensus 309 vYsTCSi~ 316 (384)
.|+|||+.
T Consensus 156 ~y~~ls~~ 163 (299)
T 2h1r_A 156 NYSRLTIN 163 (299)
T ss_dssp TCCHHHHH
T ss_pred chhHHHHH
Confidence 99998863
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-11 Score=111.93 Aligned_cols=126 Identities=11% Similarity=0.154 Sum_probs=98.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+++|++|||+|||+|..++.++... ..+.|+|+|+++..++.+++|++++|+.+ +.+..+|+...... +..||.|+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~--~~~~D~Iv 95 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK--KDAIDTIV 95 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc--cccccEEE
Confidence 4678999999999999999988863 34689999999999999999999999976 99999998765421 13699988
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+ .|.| ..+-.+||..+...| +++|+||.+.- .+.+.|...|...+|.
T Consensus 96 i----agmG--------------------g~lI~~IL~~~~~~L----~~~~~lIlq~~-----~~~~~lr~~L~~~Gf~ 142 (244)
T 3gnl_A 96 I----AGMG--------------------GTLIRTILEEGAAKL----AGVTKLILQPN-----IAAWQLREWSEQNNWL 142 (244)
T ss_dssp E----EEEC--------------------HHHHHHHHHHTGGGG----TTCCEEEEEES-----SCHHHHHHHHHHHTEE
T ss_pred E----eCCc--------------------hHHHHHHHHHHHHHh----CCCCEEEEEcC-----CChHHHHHHHHHCCCE
Confidence 6 2333 123356888888876 99999998763 3677777777777877
Q ss_pred Eee
Q 016730 335 LVP 337 (384)
Q Consensus 335 l~~ 337 (384)
++.
T Consensus 143 i~~ 145 (244)
T 3gnl_A 143 ITS 145 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=112.51 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=85.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~Vl 254 (384)
+.+|++|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++++. .++.++.+|+...... ...+.||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence 678999999999999999999998765579999999999999999998765 6789999999874311 1125799999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|+| .|+ ....++..+.++| ||||+++++.+
T Consensus 149 ~~~~---------~~~---------------~~~~~l~~~~~~L----kpgG~l~~~~~ 179 (227)
T 1g8a_A 149 EDVA---------QPT---------------QAKILIDNAEVYL----KRGGYGMIAVK 179 (227)
T ss_dssp ECCC---------STT---------------HHHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred ECCC---------CHh---------------HHHHHHHHHHHhc----CCCCEEEEEEe
Confidence 9987 111 1123477788886 99999998743
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-12 Score=118.25 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=92.4
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc--
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-- 245 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~-- 245 (384)
+...++...++.+|||+|||+|..+..++..++..+.|+++|+++.+++.+++++++.|+. ++.+..+|+......+
T Consensus 63 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~ 142 (232)
T 3cbg_A 63 FLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ 142 (232)
T ss_dssp HHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 3333444456789999999999999999998865689999999999999999999999986 4889899876532111
Q ss_pred CC--CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 246 GL--NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 246 ~~--~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
.. +.||.|++|++. + ....++..+.++| +|||+|++..+...
T Consensus 143 ~~~~~~fD~V~~d~~~---------~----------------~~~~~l~~~~~~L----kpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 143 GKPLPEFDLIFIDADK---------R----------------NYPRYYEIGLNLL----RRGGLMVIDNVLWH 186 (232)
T ss_dssp SSSCCCEEEEEECSCG---------G----------------GHHHHHHHHHHTE----EEEEEEEEECTTGG
T ss_pred cCCCCCcCEEEECCCH---------H----------------HHHHHHHHHHHHc----CCCeEEEEeCCCcC
Confidence 11 579999999761 0 1234677888886 99999999887764
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=120.74 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=94.7
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHH---ccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc--ccccC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAAL---MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL--PKVLG 246 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~---~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~--~~~~~ 246 (384)
.++...++.+|||+|||+|+.|..+++. +.+.++|+++|+++.+++.++ .++ .++.++++|+... .....
T Consensus 75 ~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~~~l~~~~ 149 (236)
T 2bm8_A 75 DMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDLTTFEHLR 149 (236)
T ss_dssp HHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCSGGGGGGS
T ss_pred HHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhHHHHHhhc
Confidence 3444456789999999999999999998 455689999999999988776 122 5799999999875 12222
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHH-chhccCCCCcEEEEEe-ccCCccccHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYST-CSIMVTENEAVI 324 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~-~L~~~lkpGG~lvYsT-CSi~~~ENe~vv 324 (384)
..+||.|++|+. |. + ..++|..+.+ .| ||||+|++.. |.+.+..+++.+
T Consensus 150 ~~~fD~I~~d~~---------~~---------~-------~~~~l~~~~r~~L----kpGG~lv~~d~~~~~~~~~~~~~ 200 (236)
T 2bm8_A 150 EMAHPLIFIDNA---------HA---------N-------TFNIMKWAVDHLL----EEGDYFIIEDMIPYWYRYAPQLF 200 (236)
T ss_dssp SSCSSEEEEESS---------CS---------S-------HHHHHHHHHHHTC----CTTCEEEECSCHHHHHHHCHHHH
T ss_pred cCCCCEEEECCc---------hH---------h-------HHHHHHHHHHhhC----CCCCEEEEEeCcccccccCHHHH
Confidence 247999999875 11 0 1346777775 75 9999999864 445556677777
Q ss_pred HHHHhcC--CCEEe
Q 016730 325 DYALKKR--DVKLV 336 (384)
Q Consensus 325 ~~~l~~~--~~~l~ 336 (384)
..+++.. +++++
T Consensus 201 ~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 201 SEYLGAFRDVLSMD 214 (236)
T ss_dssp HHHHHTTTTTEEEE
T ss_pred HHHHHhCcccEEEc
Confidence 7777765 56554
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=109.00 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCccccc--CCCCCCEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL--GLNTVDRV 253 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~--~~~~fD~V 253 (384)
.++.+|||+|||+|..+..+++. +...|+++|+++.+++.+++|+...|+ .++.++++|+....... ..+.||+|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 57889999999999999987773 346899999999999999999999998 47999999987643211 13689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++|+|.. . ...... .. .+. +.++ |||||++++++|+-..
T Consensus 121 ~~~~~~~-~------------~~~~~~------~~-~l~-~~~~----L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 121 LLDPPYA-K------------QEIVSQ------LE-KML-ERQL----LTNEAVIVCETDKTVK 159 (187)
T ss_dssp EECCCGG-G------------CCHHHH------HH-HHH-HTTC----EEEEEEEEEEEETTCC
T ss_pred EECCCCC-c------------hhHHHH------HH-HHH-Hhcc----cCCCCEEEEEeCCccc
Confidence 9999831 0 011111 01 111 2555 4999999999887644
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=111.45 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=83.6
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc--ccCCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK--VLGLNTVD 251 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~--~~~~~~fD 251 (384)
+.+.++.+|||+|||+|..+.++++..+ .+.|+|+|+++.+++.++++++.. .++.++.+|+..... ... +.||
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~D 145 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV-EKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC-ccEE
Confidence 3467899999999999999999999876 579999999999999999998765 688998999987221 122 6799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|+.|.|- |+ ....++..+.+.| ||||+++.+
T Consensus 146 ~v~~~~~~---------~~---------------~~~~~l~~~~~~L----kpgG~l~i~ 177 (230)
T 1fbn_A 146 VIYEDVAQ---------PN---------------QAEILIKNAKWFL----KKGGYGMIA 177 (230)
T ss_dssp EEEECCCS---------TT---------------HHHHHHHHHHHHE----EEEEEEEEE
T ss_pred EEEEecCC---------hh---------------HHHHHHHHHHHhC----CCCcEEEEE
Confidence 99987651 11 1134577888776 999999886
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-12 Score=119.58 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=90.5
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCccccc--CC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL--GL 247 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~--~~ 247 (384)
..++...++.+|||+|||+|..+..++..++..+.|+++|+++.+++.+++++++.|+ .++.++.+|+....... .+
T Consensus 62 ~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~ 141 (229)
T 2avd_A 62 ANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG 141 (229)
T ss_dssp HHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT
T ss_pred HHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC
Confidence 3444456788999999999999999998876568999999999999999999999998 47899999886542111 11
Q ss_pred --CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 248 --NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 248 --~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
++||.|++|+|. ..+..++..+.++| +|||.++...+.
T Consensus 142 ~~~~~D~v~~d~~~-------------------------~~~~~~l~~~~~~L----~pgG~lv~~~~~ 181 (229)
T 2avd_A 142 EAGTFDVAVVDADK-------------------------ENCSAYYERCLQLL----RPGGILAVLRVL 181 (229)
T ss_dssp CTTCEEEEEECSCS-------------------------TTHHHHHHHHHHHE----EEEEEEEEECCS
T ss_pred CCCCccEEEECCCH-------------------------HHHHHHHHHHHHHc----CCCeEEEEECCC
Confidence 579999999871 01234677788876 999999987654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=109.33 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=88.1
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.....+.+.++.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++...|+.++.+...|+..... ..+
T Consensus 68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 145 (215)
T 2yxe_A 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--PLA 145 (215)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--GGC
T ss_pred HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--CCC
Confidence 344556778899999999999999999999875447999999999999999999999999889999998754322 136
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.||+|+++.++... + ..+.+.| ||||+++.++.+
T Consensus 146 ~fD~v~~~~~~~~~------~----------------------~~~~~~L----~pgG~lv~~~~~ 179 (215)
T 2yxe_A 146 PYDRIYTTAAGPKI------P----------------------EPLIRQL----KDGGKLLMPVGR 179 (215)
T ss_dssp CEEEEEESSBBSSC------C----------------------HHHHHTE----EEEEEEEEEESS
T ss_pred CeeEEEECCchHHH------H----------------------HHHHHHc----CCCcEEEEEECC
Confidence 89999998763211 0 2445664 999999987643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-11 Score=110.15 Aligned_cols=108 Identities=13% Similarity=0.217 Sum_probs=87.7
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~f 250 (384)
..+++.+|++|||+|||+|..+..++.. .+.|+++|+++.+++.++++++..|+ .++.+...|+.... ...+.|
T Consensus 85 ~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 159 (248)
T 2yvl_A 85 LKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE--VPEGIF 159 (248)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC--CCTTCB
T ss_pred HhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc--cCCCcc
Confidence 3455678999999999999999999887 37999999999999999999999998 67899899987743 123689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|.|++|+| +| ..++..+.++| +|||+++..+.+.
T Consensus 160 D~v~~~~~---------~~------------------~~~l~~~~~~L----~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 160 HAAFVDVR---------EP------------------WHYLEKVHKSL----MEGAPVGFLLPTA 193 (248)
T ss_dssp SEEEECSS---------CG------------------GGGHHHHHHHB----CTTCEEEEEESSH
T ss_pred cEEEECCc---------CH------------------HHHHHHHHHHc----CCCCEEEEEeCCH
Confidence 99999877 11 13467777775 9999999877543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-12 Score=127.34 Aligned_cols=163 Identities=20% Similarity=0.162 Sum_probs=114.6
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHcc------------CCceEEEEeCCHHHHHHHHHHHH
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMK------------NTGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~------------~~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
.|.|+--..-+.+.+.++.+.++.+|||.|||+|+....++..+. ....++|+|+++..++.++.|+.
T Consensus 150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 344443333344566777888999999999999999998887652 12579999999999999999999
Q ss_pred HcCCc--eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCC---chhhccCCHHHHHHHHHHHHHHHHHHHHchh
Q 016730 225 RMGVT--NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD---ESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (384)
Q Consensus 225 r~g~~--~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~---p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~ 299 (384)
..|+. ++.+.++|+...+.. .+||+|+.+||+++....... .+..+..+ ..+..++.++++.|
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~---~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~--------~~~~~fl~~~~~~L- 297 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPS---TLVDVILANPPFGTRPAGSVDINRPDFYVETK--------NNQLNFLQHMMLML- 297 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS--------CHHHHHHHHHHHHE-
T ss_pred HhCCCcCCCCEeeCCCCCCccc---CCcCEEEECCCCCCcccccchhhHhhcCCCCc--------chHHHHHHHHHHHh-
Confidence 99986 677888998765432 489999999999886543221 11111111 12456888888886
Q ss_pred ccCCCCcEEEEEecc--CCccccHHHHH-HHHhcCCCE
Q 016730 300 ANSKSGGYIVYSTCS--IMVTENEAVID-YALKKRDVK 334 (384)
Q Consensus 300 ~~lkpGG~lvYsTCS--i~~~ENe~vv~-~~l~~~~~~ 334 (384)
||||++++.++. ++....+..+. +++++..++
T Consensus 298 ---k~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~~l~ 332 (445)
T 2okc_A 298 ---KTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLH 332 (445)
T ss_dssp ---EEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEE
T ss_pred ---ccCCEEEEEECCcccccCcHHHHHHHHHHhcCcEE
Confidence 999999998864 23322334444 677665443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-11 Score=119.41 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.++++|||+|||+|..+..++.. ...|+|+|+++.+++.+++|++.+|++ +.+..+|+..+.. ..||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~----~~fD~Vv~ 359 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV----KGFDTVIV 359 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC----TTCSEEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc----cCCCEEEE
Confidence 567899999999999999998875 358999999999999999999999998 9999999987642 27999999
Q ss_pred cCCCCCC
Q 016730 256 DAPCSGT 262 (384)
Q Consensus 256 DaPCSg~ 262 (384)
|||.+|.
T Consensus 360 dPPr~g~ 366 (425)
T 2jjq_A 360 DPPRAGL 366 (425)
T ss_dssp CCCTTCS
T ss_pred cCCccch
Confidence 9997554
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=107.40 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=86.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCC--------ceEEEEeCCHHHHHHHHHHHHHcCCceEEEE-ecCCCCccc---
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNT--------GLIYANEMKASRLKSLTANLHRMGVTNTIVC-NYDGNELPK--- 243 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~--------g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~-~~D~~~~~~--- 243 (384)
+++|.+|||+|||+|..+..+++.++.. +.|+++|+++.+ ++.++.++ .+|......
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 5679999999999999999999987643 799999999842 34567788 888776431
Q ss_pred ---ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 244 ---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 244 ---~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
...+++||+|++|.++..+|.. ..+.......+..++..+.++| ||||+++.+++.- .+.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~L----kpgG~lv~~~~~~--~~~ 151 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFR-----------DLDHDRLISLCLTLLSVTPDIL----QPGGTFLCKTWAG--SQS 151 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEEECCS--GGG
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHh----cCCCEEEEEecCC--ccH
Confidence 1223589999999876555531 1112223345567888888886 9999999877533 333
Q ss_pred HHHHHHH
Q 016730 321 EAVIDYA 327 (384)
Q Consensus 321 e~vv~~~ 327 (384)
+++...+
T Consensus 152 ~~~~~~l 158 (196)
T 2nyu_A 152 RRLQRRL 158 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=114.27 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=86.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH------cCCceEEEEecCCCC-cccccCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------MGVTNTIVCNYDGNE-LPKVLGLN 248 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r------~g~~~v~~~~~D~~~-~~~~~~~~ 248 (384)
..++.+|||+|||+|..+..+|...+ ...|+|+|+++.+++.++++++. .+..|+.++.+|+.. ++..+..+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 34678999999999999999988764 36899999999999999998875 467889999999987 44334457
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.||.|++.-|. |..+. .....+ -.+..+|..+.++| ||||.|+.+|+
T Consensus 123 ~~D~v~~~~~d---------p~~k~---~h~krr--~~~~~~l~~~~~~L----kpGG~l~~~td 169 (235)
T 3ckk_A 123 QLTKMFFLFPD---------PHFKR---TKHKWR--IISPTLLAEYAYVL----RVGGLVYTITD 169 (235)
T ss_dssp CEEEEEEESCC-------------------------CCCHHHHHHHHHHE----EEEEEEEEEES
T ss_pred CeeEEEEeCCC---------chhhh---hhhhhh--hhhHHHHHHHHHHC----CCCCEEEEEeC
Confidence 89999986552 21110 000000 01346788888876 99999999886
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-11 Score=105.97 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=86.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-----eEEEEecCCCCccccc
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-----NTIVCNYDGNELPKVL 245 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-----~v~~~~~D~~~~~~~~ 245 (384)
...+...++.+|||+|||+|..+..+++..+ ...|+++|+|+..++.+++++...++. ++.+..+|+...+..
T Consensus 22 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 99 (219)
T 3jwg_A 22 VAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR- 99 (219)
T ss_dssp HHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG-
T ss_pred HHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc-
Confidence 3444556788999999999999998887653 368999999999999999999887765 689999998665432
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.++||.|++... + ......+ ..++|..+.+.| ||||.++.+.++
T Consensus 100 -~~~fD~V~~~~~------l-------~~~~~~~-------~~~~l~~~~~~L----kpgG~~i~~~~~ 143 (219)
T 3jwg_A 100 -FSGYDAATVIEV------I-------EHLDENR-------LQAFEKVLFEFT----RPQTVIVSTPNK 143 (219)
T ss_dssp -GTTCSEEEEESC------G-------GGCCHHH-------HHHHHHHHHTTT----CCSEEEEEEEBG
T ss_pred -cCCCCEEEEHHH------H-------HhCCHHH-------HHHHHHHHHHhh----CCCEEEEEccch
Confidence 368999997432 1 1112221 245778888875 999977766554
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=106.72 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=87.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++..+ ...|+++|+|+..++.+++++...+ ++.++.+|+..++.. +.||.|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---EKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---SCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---CCceEEEE
Confidence 56789999999999999999999874 3799999999999999999887665 789999999887642 68999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
... + . .....+ ..++|..+.++| ||||+++.++....
T Consensus 116 ~~~------l------~-~~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 116 ALS------I------H-HLEDED-------KKELYKRSYSIL----KESGIFINADLVHG 152 (234)
T ss_dssp ESC------G------G-GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEECBC
T ss_pred eCc------c------c-cCCHHH-------HHHHHHHHHHhc----CCCcEEEEEEecCC
Confidence 643 1 1 112111 235788888886 99999999886553
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.5e-12 Score=108.26 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=83.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~Vll 255 (384)
++.+|||+|||+|..+..+++.. ..|+++|+|+.+++.+++|+...++ ++.+.++|+....... ..++||.|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 78899999999999999888863 2499999999999999999999998 8899999987642211 1247999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHH--HHchhccCCCCcEEEEEeccCCccc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA--IDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a--~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
|+|.. +. .+ +++... .++ |||||+++.++++....+
T Consensus 117 ~~~~~--~~---~~-------------------~~~~~~~~~~~----L~~gG~~~~~~~~~~~~~ 154 (171)
T 1ws6_A 117 APPYA--MD---LA-------------------ALFGELLASGL----VEAGGLYVLQHPKDLYLP 154 (171)
T ss_dssp CCCTT--SC---TT-------------------HHHHHHHHHTC----EEEEEEEEEEEETTSCCT
T ss_pred CCCCc--hh---HH-------------------HHHHHHHhhcc----cCCCcEEEEEeCCccCCc
Confidence 99964 21 00 122222 355 499999999887765433
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=118.93 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=92.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+|.+|||+|||+|..+..++.. ...|+++|+|+..++.+++|+..+|+. +.++.+|+...... .++||.|++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~--~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTE--EARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCT--TCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcccc--CCCeEEEEEC
Confidence 47889999999999999999886 359999999999999999999999986 78889999876532 3689999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
+|+...+... .....+++..+.+.| ||||++++++++..+.
T Consensus 306 pp~~~~~~~~-----------------~~~~~~~l~~~~~~L----kpGG~l~iv~n~~l~~ 346 (381)
T 3dmg_A 306 PPFHVGGAVI-----------------LDVAQAFVNVAAARL----RPGGVFFLVSNPFLKY 346 (381)
T ss_dssp CCCCTTCSSC-----------------CHHHHHHHHHHHHHE----EEEEEEEEEECTTSCH
T ss_pred Cchhhccccc-----------------HHHHHHHHHHHHHhc----CcCcEEEEEEcCCCCh
Confidence 9975432211 012356788888886 9999999998877643
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=111.50 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=91.0
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
.|....+......+...+.+.++.+|||+|||+|..+..+++..+ +.|+++|+++.+++.++++++..|+.++.+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 147 (235)
T 1jg1_A 70 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG 147 (235)
T ss_dssp TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC
Confidence 444444433333445566788999999999999999999999875 689999999999999999999999988999999
Q ss_pred CCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+.... .....||+|+++.+.... ...+.+.| ||||+++.++-.
T Consensus 148 d~~~~~--~~~~~fD~Ii~~~~~~~~----------------------------~~~~~~~L----~pgG~lvi~~~~ 191 (235)
T 1jg1_A 148 DGSKGF--PPKAPYDVIIVTAGAPKI----------------------------PEPLIEQL----KIGGKLIIPVGS 191 (235)
T ss_dssp CGGGCC--GGGCCEEEEEECSBBSSC----------------------------CHHHHHTE----EEEEEEEEEECS
T ss_pred CcccCC--CCCCCccEEEECCcHHHH----------------------------HHHHHHhc----CCCcEEEEEEec
Confidence 973211 112469999998763211 11345554 999999987653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=104.65 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=86.8
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
+....+...++.+|||+|||+|..+..+++.. ..|+++|+++..++.+++++...+ ++.+..+|+..++. .+
T Consensus 42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~---~~ 113 (216)
T 3ofk_A 42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFST---AE 113 (216)
T ss_dssp HHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCC---SC
T ss_pred HHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCC---CC
Confidence 34445666788999999999999999887763 589999999999999999987654 78999999988762 37
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+||.|++... + .+...+.. ..++|..+.++| ||||.+++++
T Consensus 114 ~fD~v~~~~~------l------~~~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~ 154 (216)
T 3ofk_A 114 LFDLIVVAEV------L------YYLEDMTQ-------MRTAIDNMVKML----APGGHLVFGS 154 (216)
T ss_dssp CEEEEEEESC------G------GGSSSHHH-------HHHHHHHHHHTE----EEEEEEEEEE
T ss_pred CccEEEEccH------H------HhCCCHHH-------HHHHHHHHHHHc----CCCCEEEEEe
Confidence 8999998532 1 11222222 245778888886 9999999986
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-12 Score=120.38 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=77.2
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC---
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG--- 246 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~--- 246 (384)
+...|++++|.+|||+|||+|+.|..+++..+ .+.|+|+|+|+.+++.+++|++.+| .++.++++|+..++..+.
T Consensus 18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g 95 (301)
T 1m6y_A 18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLG 95 (301)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcC
Confidence 34567788999999999999999999999876 4799999999999999999999988 789999999887653221
Q ss_pred CCCCCEEEEcCCCCC
Q 016730 247 LNTVDRVLLDAPCSG 261 (384)
Q Consensus 247 ~~~fD~VllDaPCSg 261 (384)
...||.|++|+|||.
T Consensus 96 ~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 96 IEKVDGILMDLGVST 110 (301)
T ss_dssp CSCEEEEEEECSCCH
T ss_pred CCCCCEEEEcCccch
Confidence 147999999999984
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-12 Score=115.47 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=86.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..+|.+|||+|||+|..+.++++..+ ..|+++|+|+..++.++++.+..+. ++.++.+|+......+..+.||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCceEEE
Confidence 46799999999999999988877543 5799999999999999999888775 57777888876654455678999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|+..+..... + ......++.++.++| ||||+|+|.+
T Consensus 135 D~~~~~~~~~-~----------------~~~~~~~~~e~~rvL----kPGG~l~f~~ 170 (236)
T 3orh_A 135 DTYPLSEETW-H----------------THQFNFIKNHAFRLL----KPGGVLTYCN 170 (236)
T ss_dssp CCCCCBGGGT-T----------------THHHHHHHHTHHHHE----EEEEEEEECC
T ss_pred eeeecccchh-h----------------hcchhhhhhhhhhee----CCCCEEEEEe
Confidence 9864332211 0 012345677888876 9999999854
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=111.78 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=96.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..++.+ + ..|+++|+|+.+++.+++|+.++|+. +.+..+|+... +..++||+|++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~--g-~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~---~~~~~fD~Vv~ 190 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL--G-GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA---LPFGPFDLLVA 190 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH---GGGCCEEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh--C-CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc---CcCCCCCEEEE
Confidence 467899999999999999887774 2 28999999999999999999999987 88888887652 12368999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEE
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l 335 (384)
+.+. .....++..+.++| ||||+++.+.... +..+.+...+++.++++
T Consensus 191 n~~~-------------------------~~~~~~l~~~~~~L----kpgG~lils~~~~---~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 191 NLYA-------------------------ELHAALAPRYREAL----VPGGRALLTGILK---DRAPLVREAMAGAGFRP 238 (254)
T ss_dssp ECCH-------------------------HHHHHHHHHHHHHE----EEEEEEEEEEEEG---GGHHHHHHHHHHTTCEE
T ss_pred CCcH-------------------------HHHHHHHHHHHHHc----CCCCEEEEEeecc---CCHHHHHHHHHHCCCEE
Confidence 7651 01245777788875 9999999976543 45666677778888887
Q ss_pred eec
Q 016730 336 VPC 338 (384)
Q Consensus 336 ~~~ 338 (384)
+..
T Consensus 239 ~~~ 241 (254)
T 2nxc_A 239 LEE 241 (254)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.7e-11 Score=104.02 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=88.8
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.....+...++.+|||+|||+|..+..+++. ...|+++|+++..++.+++++...++.++.+...|+..++. .+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~ 96 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---DR 96 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---CC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---CC
Confidence 3445566667889999999999999988886 35899999999999999999999998889999999887653 37
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.||.|++..+. . ...+++ ..+++..+.+.| ||||++++.+
T Consensus 97 ~~D~v~~~~~l------~-------~~~~~~-------~~~~l~~~~~~L----~~gG~l~~~~ 136 (199)
T 2xvm_A 97 QYDFILSTVVL------M-------FLEAKT-------IPGLIANMQRCT----KPGGYNLIVA 136 (199)
T ss_dssp CEEEEEEESCG------G-------GSCGGG-------HHHHHHHHHHTE----EEEEEEEEEE
T ss_pred CceEEEEcchh------h-------hCCHHH-------HHHHHHHHHHhc----CCCeEEEEEE
Confidence 89999986431 1 111111 245778888876 9999987654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-11 Score=108.48 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=101.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..++... ...|+++|+|+.+++.+++++... .++.+..+|+..++. ..++|
T Consensus 48 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--~~~~f 121 (266)
T 3ujc_A 48 LSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF--PENNF 121 (266)
T ss_dssp TTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC--CTTCE
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC--CCCcE
Confidence 344567789999999999999999999876 368999999999999999887654 678999999988752 34789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc-------------
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV------------- 317 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~------------- 317 (384)
|+|++... + ...... ....+|..+.++| ||||+++.++.+...
T Consensus 122 D~v~~~~~------l-------~~~~~~-------~~~~~l~~~~~~L----~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 177 (266)
T 3ujc_A 122 DLIYSRDA------I-------LALSLE-------NKNKLFQKCYKWL----KPTGTLLITDYCATEKENWDDEFKEYVK 177 (266)
T ss_dssp EEEEEESC------G-------GGSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEEEESCGGGCCHHHHHHHH
T ss_pred EEEeHHHH------H-------HhcChH-------HHHHHHHHHHHHc----CCCCEEEEEEeccCCcccchHHHHHHHh
Confidence 99998532 1 111212 2346788888886 999999998754332
Q ss_pred -----cccHHHHHHHHhcCCCEEeec
Q 016730 318 -----TENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 318 -----~ENe~vv~~~l~~~~~~l~~~ 338 (384)
--..+.+..+++..|++.+..
T Consensus 178 ~~~~~~~~~~~~~~~l~~~Gf~~~~~ 203 (266)
T 3ujc_A 178 QRKYTLITVEEYADILTACNFKNVVS 203 (266)
T ss_dssp HHTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 113445556667778776653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=107.79 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=88.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+.+.+|.+|||+|||+|..+..+++..+ ..|+++|+|+..++.+++++...|+. ++.+...|+..++ ++
T Consensus 57 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 129 (287)
T 1kpg_A 57 LGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----EP 129 (287)
T ss_dssp HTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----CC
T ss_pred HHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----CC
Confidence 3445677899999999999999999997653 48999999999999999999988874 6889899987654 68
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
||+|++.- ++..- ... ....+|..+.++| ||||+++.++...
T Consensus 130 fD~v~~~~------~l~~~-------~~~-------~~~~~l~~~~~~L----kpgG~l~~~~~~~ 171 (287)
T 1kpg_A 130 VDRIVSIG------AFEHF-------GHE-------RYDAFFSLAHRLL----PADGVMLLHTITG 171 (287)
T ss_dssp CSEEEEES------CGGGT-------CTT-------THHHHHHHHHHHS----CTTCEEEEEEEEE
T ss_pred eeEEEEeC------chhhc-------ChH-------HHHHHHHHHHHhc----CCCCEEEEEEecC
Confidence 99999742 11111 001 1245778888875 9999999987664
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-11 Score=102.50 Aligned_cols=113 Identities=22% Similarity=0.266 Sum_probs=85.1
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc------ccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~------~~~~~~ 249 (384)
++++.+|||+|||+|..+..+++.++....|+++|+++ ++. +.++.+...|+...+. ....++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccCCCCc
Confidence 56889999999999999999999875457999999998 542 2578888999987541 133468
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
||.|++|+|+...|.. ..+.......+..++..+.++| +|||.++.++..
T Consensus 89 ~D~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~L----~~gG~l~~~~~~ 138 (180)
T 1ej0_A 89 VQVVMSDMAPNMSGTP-----------AVDIPRAMYLVELALEMCRDVL----APGGSFVVKVFQ 138 (180)
T ss_dssp EEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEEEES
T ss_pred eeEEEECCCccccCCC-----------ccchHHHHHHHHHHHHHHHHHc----CCCcEEEEEEec
Confidence 9999999998766631 1122233445578888888886 999999976643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=113.72 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=91.5
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc-ccc--
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKV-- 244 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~-~~~-- 244 (384)
+...++...++.+|||+|||+|..+..++..++..+.|+++|+++.+++.+++++++.|+.+ +.+..+|+... +..
T Consensus 51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 130 (239)
T 2hnk_A 51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLID 130 (239)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHh
Confidence 34444555678999999999999999999988656899999999999999999999999976 89999987653 211
Q ss_pred ----------cC-C-CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 245 ----------LG-L-NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 245 ----------~~-~-~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+. . +.||.|++|+.. .. ...++..+.++| ||||++++.+
T Consensus 131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~------------------~~-------~~~~l~~~~~~L----~pgG~lv~~~ 181 (239)
T 2hnk_A 131 SKSAPSWASDFAFGPSSIDLFFLDADK------------------EN-------YPNYYPLILKLL----KPGGLLIADN 181 (239)
T ss_dssp CSSCCGGGTTTCCSTTCEEEEEECSCG------------------GG-------HHHHHHHHHHHE----EEEEEEEEEC
T ss_pred hcccccccccccCCCCCcCEEEEeCCH------------------HH-------HHHHHHHHHHHc----CCCeEEEEEc
Confidence 11 1 679999998530 01 124577777876 9999999987
Q ss_pred ccC
Q 016730 313 CSI 315 (384)
Q Consensus 313 CSi 315 (384)
+..
T Consensus 182 ~~~ 184 (239)
T 2hnk_A 182 VLW 184 (239)
T ss_dssp SSG
T ss_pred ccc
Confidence 644
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-10 Score=105.26 Aligned_cols=115 Identities=13% Similarity=0.205 Sum_probs=90.3
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+.+.++.+|||+|||+|..+..+++.. ...|+++|+|+..++.+++++...|+. ++.+..+|+..++ +..++
T Consensus 54 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 129 (273)
T 3bus_A 54 IALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP--FEDAS 129 (273)
T ss_dssp HHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--SCTTC
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC--CCCCC
Confidence 344567789999999999999999998875 369999999999999999999999985 5899999998865 23478
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
||+|++... +..-+ .+ ..+|..+.++| ||||+++.++...
T Consensus 130 fD~v~~~~~------l~~~~------~~----------~~~l~~~~~~L----~pgG~l~i~~~~~ 169 (273)
T 3bus_A 130 FDAVWALES------LHHMP------DR----------GRALREMARVL----RPGGTVAIADFVL 169 (273)
T ss_dssp EEEEEEESC------TTTSS------CH----------HHHHHHHHTTE----EEEEEEEEEEEEE
T ss_pred ccEEEEech------hhhCC------CH----------HHHHHHHHHHc----CCCeEEEEEEeec
Confidence 999997432 11111 11 35778888876 9999999887653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=103.25 Aligned_cols=112 Identities=12% Similarity=0.200 Sum_probs=86.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-----eEEEEecCCCCcccccCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-----NTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-----~v~~~~~D~~~~~~~~~~~~f 250 (384)
++++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...++. ++.+...|+..++. ..+.|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~ 102 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF--HDSSF 102 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--CTTCE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--CCCce
Confidence 357889999999999999988886 358999999999999999999888873 67888999987652 34789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|.|++... + .+...+.. ..++|..+.++| ||||+++.++...
T Consensus 103 D~v~~~~~------l------~~~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 103 DFAVMQAF------L------TSVPDPKE-------RSRIIKEVFRVL----KPGAYLYLVEFGQ 144 (235)
T ss_dssp EEEEEESC------G------GGCCCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEBC
T ss_pred eEEEEcch------h------hcCCCHHH-------HHHHHHHHHHHc----CCCeEEEEEECCc
Confidence 99998643 1 11112222 235778888876 9999999987654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=117.59 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=74.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCccccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL 245 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~ 245 (384)
....+..+++.++++|||+|||+|..|..+++.. +.|+|+|+|+.+++.+++++...|. .++.++++|+..++.
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-- 91 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-- 91 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--
Confidence 3345566778889999999999999999999873 5899999999999999999988776 579999999987642
Q ss_pred CCCCCCEEEEcCCCCC
Q 016730 246 GLNTVDRVLLDAPCSG 261 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg 261 (384)
..||.|++++|+..
T Consensus 92 --~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 92 --PFFDTCVANLPYQI 105 (285)
T ss_dssp --CCCSEEEEECCGGG
T ss_pred --hhhcEEEEecCccc
Confidence 47999999999643
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-11 Score=106.34 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=85.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..++...+ ...|+++|+++.+++.++++++..|+.++.+..+|+..++. .++||.|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---EPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---CSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---cCCcCEEEEec
Confidence 478999999999999999998865 37999999999999999999999999889999999987652 26899999742
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
- . . ...++..+.++| +|||+++.....
T Consensus 141 ~--------~--------~----------~~~~l~~~~~~L----~~gG~l~~~~~~ 167 (207)
T 1jsx_A 141 F--------A--------S----------LNDMVSWCHHLP----GEQGRFYALKGQ 167 (207)
T ss_dssp S--------S--------S----------HHHHHHHHTTSE----EEEEEEEEEESS
T ss_pred c--------C--------C----------HHHHHHHHHHhc----CCCcEEEEEeCC
Confidence 1 0 0 235778888875 999999987654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.19 E-value=7e-10 Score=97.37 Aligned_cols=129 Identities=6% Similarity=-0.022 Sum_probs=94.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++ .++.+...|+..++. ..+.||.|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~--~~~~~D~i~~ 113 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQI--SETDFDLIVS 113 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCC--CCCCEEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCC--CCCceeEEEE
Confidence 457889999999999999988876 358999999999999998875 346788889887642 2468999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEE
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l 335 (384)
++++ .......+ ..++|..+.+.| +|||++++++.+... -....+...++..++++
T Consensus 114 ~~~~------------~~~~~~~~-------~~~~l~~~~~~l----~~~G~l~~~~~~~~~-~~~~~~~~~l~~~Gf~~ 169 (195)
T 3cgg_A 114 AGNV------------MGFLAEDG-------REPALANIHRAL----GADGRAVIGFGAGRG-WVFGDFLEVAERVGLEL 169 (195)
T ss_dssp CCCC------------GGGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEETTSS-CCHHHHHHHHHHHTEEE
T ss_pred CCcH------------HhhcChHH-------HHHHHHHHHHHh----CCCCEEEEEeCCCCC-cCHHHHHHHHHHcCCEE
Confidence 7542 11112221 356788888886 999999987755432 34555666777778887
Q ss_pred eec
Q 016730 336 VPC 338 (384)
Q Consensus 336 ~~~ 338 (384)
+..
T Consensus 170 ~~~ 172 (195)
T 3cgg_A 170 ENA 172 (195)
T ss_dssp EEE
T ss_pred eee
Confidence 664
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.1e-11 Score=107.76 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=89.5
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
.|....+..........+.+.++.+|||+|||+|..+..++... +.|+++|+++.+++.+++++...| ++.+..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~ 123 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILG 123 (231)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEES
T ss_pred CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEEC
Confidence 34443333333344555677889999999999999999998874 689999999999999999998877 7889899
Q ss_pred CCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|+..... ..++||+|+++.++... ...+.+.| ||||++++++.+-
T Consensus 124 d~~~~~~--~~~~fD~v~~~~~~~~~----------------------------~~~~~~~L----~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 124 DGTLGYE--EEKPYDRVVVWATAPTL----------------------------LCKPYEQL----KEGGIMILPIGVG 168 (231)
T ss_dssp CGGGCCG--GGCCEEEEEESSBBSSC----------------------------CHHHHHTE----EEEEEEEEEECSS
T ss_pred Ccccccc--cCCCccEEEECCcHHHH----------------------------HHHHHHHc----CCCcEEEEEEcCC
Confidence 9876322 13689999998764221 01344554 9999999987653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-11 Score=112.19 Aligned_cols=114 Identities=11% Similarity=-0.039 Sum_probs=88.4
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.++++.+|||+|||+|..+..++........|+++|+++..++.+++++...|+.+ +.++.+|+..++. . +.||.|
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~-~~fD~v 191 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--R-EGYDLL 191 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--C-SCEEEE
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--c-CCeEEE
Confidence 35688999999999999998876333445799999999999999999999999875 9999999988753 2 789999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
++..+ +- +...+. ...+++..+.+.| ||||+++.++.+
T Consensus 192 ~~~~~------~~------~~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~ 229 (305)
T 3ocj_A 192 TSNGL------NI------YEPDDA-------RVTELYRRFWQAL----KPGGALVTSFLT 229 (305)
T ss_dssp ECCSS------GG------GCCCHH-------HHHHHHHHHHHHE----EEEEEEEEECCC
T ss_pred EECCh------hh------hcCCHH-------HHHHHHHHHHHhc----CCCeEEEEEecC
Confidence 97543 11 111222 2345788888886 999999998744
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-10 Score=108.50 Aligned_cols=116 Identities=9% Similarity=0.074 Sum_probs=90.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+.+.+|.+|||+|||+|..+..+++..+ ..|+++|+|+.+++.+++++...|+. ++.+..+|+..++ +.
T Consensus 83 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 155 (318)
T 2fk8_A 83 LDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----EP 155 (318)
T ss_dssp HTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----CC
T ss_pred HHhcCCCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----CC
Confidence 3445677899999999999999999998763 58999999999999999999999885 4889899987653 67
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
||+|++... +..- ... ...++|..+.++| ||||+++.++.+...
T Consensus 156 fD~v~~~~~------l~~~-------~~~-------~~~~~l~~~~~~L----kpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 156 VDRIVSIEA------FEHF-------GHE-------NYDDFFKRCFNIM----PADGRMTVQSSVSYH 199 (318)
T ss_dssp CSEEEEESC------GGGT-------CGG-------GHHHHHHHHHHHS----CTTCEEEEEEEECCC
T ss_pred cCEEEEeCh------HHhc-------CHH-------HHHHHHHHHHHhc----CCCcEEEEEEeccCC
Confidence 999998532 1111 111 1345778888875 999999998887644
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=107.35 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
...++.+|||+|||+|..+..+++..+ .+.|+++|+++..++.+++++...|+.++.+...|+..++. ..++||.|+
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~v~ 110 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--EDSSFDHIF 110 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--CTTCEEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--CCCCeeEEE
Confidence 346899999999999999999998854 37999999999999999999999999999999999987653 347899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+... +. +...+ ..+|..+.++| ||||+++..+
T Consensus 111 ~~~~------l~------~~~~~----------~~~l~~~~~~L----~pgG~l~~~~ 142 (276)
T 3mgg_A 111 VCFV------LE------HLQSP----------EEALKSLKKVL----KPGGTITVIE 142 (276)
T ss_dssp EESC------GG------GCSCH----------HHHHHHHHHHE----EEEEEEEEEE
T ss_pred Eech------hh------hcCCH----------HHHHHHHHHHc----CCCcEEEEEE
Confidence 8543 11 11111 24677777775 9999999876
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=112.91 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=89.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-----C-C--ceEEEEecCCCCccc---
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-----G-V--TNTIVCNYDGNELPK--- 243 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-----g-~--~~v~~~~~D~~~~~~--- 243 (384)
++.+|.+|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++++. | . .++.++.+|+..+..
T Consensus 80 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 80 GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp GGGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred cCCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 4568899999999999999999998865679999999999999999998876 4 3 589999999987621
Q ss_pred -ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 244 -VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 244 -~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.+..++||+|+++.. +. +... ...+|..+.++| ||||+|++++..
T Consensus 160 ~~~~~~~fD~V~~~~~------l~------~~~d----------~~~~l~~~~r~L----kpgG~l~i~~~~ 205 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCV------CN------LSTN----------KLALFKEIHRVL----RDGGELYFSDVY 205 (383)
T ss_dssp CCCCTTCEEEEEEESC------GG------GCSC----------HHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEccc------hh------cCCC----------HHHHHHHHHHHc----CCCCEEEEEEec
Confidence 234478999998643 11 1111 135788888886 999999988643
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=102.32 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=88.2
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~f 250 (384)
..+.++++ +|||+|||+|..+..+++. ....|+++|+++..++.+++++...|+. ++.+.++|+..++ +..++|
T Consensus 38 ~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 112 (219)
T 3dlc_A 38 NRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--IEDNYA 112 (219)
T ss_dssp HHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--SCTTCE
T ss_pred HhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--CCcccc
Confidence 33455566 9999999999999999987 3369999999999999999999999985 6999999998865 334789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|.|++.... .+... ..++|..+.+.| ||||+++.++...
T Consensus 113 D~v~~~~~l------------~~~~~----------~~~~l~~~~~~L----~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 113 DLIVSRGSV------------FFWED----------VATAFREIYRIL----KSGGKTYIGGGFG 151 (219)
T ss_dssp EEEEEESCG------------GGCSC----------HHHHHHHHHHHE----EEEEEEEEEECCS
T ss_pred cEEEECchH------------hhccC----------HHHHHHHHHHhC----CCCCEEEEEeccC
Confidence 999986531 11111 234778888876 9999999876433
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=108.04 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=97.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH----HHHcCCceEEEEecCCCCcccccC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN----LHRMGVTNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n----~~r~g~~~v~~~~~D~~~~~~~~~ 246 (384)
...+.++++.+|||+|||+|..+..+++..+ .+.|+++|+|+.+++.+.++ ....++.++.+.++|+..++..
T Consensus 20 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~-- 96 (218)
T 3mq2_A 20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL-- 96 (218)
T ss_dssp HHHHHTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC--
T ss_pred HHHhhccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC--
Confidence 4455678899999999999999999999754 47999999999988865433 3456778899999999987642
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC-----------
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI----------- 315 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi----------- 315 (384)
.+. |.|.+..|. ..........+.++|..+.++| ||||+++++....
T Consensus 97 ~~~-d~v~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~ 154 (218)
T 3mq2_A 97 SGV-GELHVLMPW-----------------GSLLRGVLGSSPEMLRGMAAVC----RPGASFLVALNLHAWRPSVPEVGE 154 (218)
T ss_dssp CCE-EEEEEESCC-----------------HHHHHHHHTSSSHHHHHHHHTE----EEEEEEEEEEEGGGBTTBCGGGTT
T ss_pred CCC-CEEEEEccc-----------------hhhhhhhhccHHHHHHHHHHHc----CCCcEEEEEecccccccccccccc
Confidence 244 888765441 0111112222356788888886 9999999853221
Q ss_pred Ccccc----HHHHHHHHhcCCCEEeecC
Q 016730 316 MVTEN----EAVIDYALKKRDVKLVPCG 339 (384)
Q Consensus 316 ~~~EN----e~vv~~~l~~~~~~l~~~~ 339 (384)
.+.-+ .+.+...++..++++..+.
T Consensus 155 ~~~~~~~~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 155 HPEPTPDSADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCccchHHHHHHHHHHHHHcCCCceeee
Confidence 11112 2234456677788877653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.6e-11 Score=105.66 Aligned_cols=136 Identities=6% Similarity=0.005 Sum_probs=92.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH------------cCCceEEEEecCCCCc
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------------MGVTNTIVCNYDGNEL 241 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r------------~g~~~v~~~~~D~~~~ 241 (384)
+.+.++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.++++... .+..++.+.++|+..+
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 94 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL 94 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence 34567899999999999999999886 25899999999999999887543 1235788999999887
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc---
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT--- 318 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~--- 318 (384)
+... .++||.|++-.. +. ..... ...+.+.++.++| ||||++++.++.....
T Consensus 95 ~~~~-~~~fD~v~~~~~------l~-------~l~~~-------~~~~~l~~~~r~L----kpgG~~~l~~~~~~~~~~~ 149 (203)
T 1pjz_A 95 TARD-IGHCAAFYDRAA------MI-------ALPAD-------MRERYVQHLEALM----PQACSGLLITLEYDQALLE 149 (203)
T ss_dssp THHH-HHSEEEEEEESC------GG-------GSCHH-------HHHHHHHHHHHHS----CSEEEEEEEEESSCSSSSS
T ss_pred Cccc-CCCEEEEEECcc------hh-------hCCHH-------HHHHHHHHHHHHc----CCCcEEEEEEEecCccccC
Confidence 6321 157999986321 11 11111 1245677777775 9999977777655321
Q ss_pred -----ccHHHHHHHHhcCCCEEeec
Q 016730 319 -----ENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 319 -----ENe~vv~~~l~~~~~~l~~~ 338 (384)
-.++.+..+++. +++++..
T Consensus 150 ~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 150 GPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp SCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 124445555555 6666543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.9e-11 Score=116.40 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=95.1
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
.+....+.+.++.+|||+|||+|..+..++...+ ...|+++|+|+.+++.+++++...++. +.+...|+.... .
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----~ 259 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----K 259 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----C
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----c
Confidence 3344455566788999999999999999998754 358999999999999999999999886 556788887643 3
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
++||.|++++|... |. ........+++..+.+.| ||||.++.++.+..+.
T Consensus 260 ~~fD~Iv~~~~~~~-g~----------------~~~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~ 309 (343)
T 2pjd_A 260 GRFDMIISNPPFHD-GM----------------QTSLDAAQTLIRGAVRHL----NSGGELRIVANAFLPY 309 (343)
T ss_dssp SCEEEEEECCCCCS-SS----------------HHHHHHHHHHHHHHGGGE----EEEEEEEEEEETTSSH
T ss_pred CCeeEEEECCCccc-Cc----------------cCCHHHHHHHHHHHHHhC----CCCcEEEEEEcCCCCc
Confidence 68999999998521 11 001123456888888886 9999999998887653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-11 Score=110.78 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=84.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
++++.+|||+|||+|..+..++... ...|+++|+|+.+++.++++.+..+ .++.++.+|+..+...+..++||.|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEE
Confidence 5689999999999999998886532 2489999999999999999998877 578999999887622244578999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|.- +... ++. .. .....++..+.++| ||||++++..++
T Consensus 135 d~~----~~~~--~~~----~~-------~~~~~~l~~~~r~L----kpgG~l~~~~~~ 172 (236)
T 1zx0_A 135 DTY----PLSE--ETW----HT-------HQFNFIKNHAFRLL----KPGGVLTYCNLT 172 (236)
T ss_dssp CCC----CCBG--GGT----TT-------HHHHHHHHTHHHHE----EEEEEEEECCHH
T ss_pred CCc----ccch--hhh----hh-------hhHHHHHHHHHHhc----CCCeEEEEEecC
Confidence 721 1000 110 00 11245677888876 999999987665
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=115.46 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=73.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeC----CHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM----KASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTV 250 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~----~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~~f 250 (384)
+++|.+|||+|||||+.|.++++. +.|+|+|+ ++.++..+ ..+..|..++.++.+ |+..++ .++|
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~----~~~f 149 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP----PERC 149 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC----CCCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC----cCCC
Confidence 367899999999999999998886 57999999 55443211 112234467888888 888764 2689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|+|++|.+|+ +|... .+.. . +..+|..+.+.| ||||.++..
T Consensus 150 D~V~sd~~~~-~g~~~----------~d~~---~--~l~~L~~~~~~L----kpGG~~v~k 190 (305)
T 2p41_A 150 DTLLCDIGES-SPNPT----------VEAG---R--TLRVLNLVENWL----SNNTQFCVK 190 (305)
T ss_dssp SEEEECCCCC-CSSHH----------HHHH---H--HHHHHHHHHHHC----CTTCEEEEE
T ss_pred CEEEECCccc-cCcch----------hhHH---H--HHHHHHHHHHHh----CCCCEEEEE
Confidence 9999999987 66410 0110 0 113667777775 999988863
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-10 Score=105.46 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=100.4
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
...++.+|||+|||+|..+..+++..+ ..|+++|+++..++.+++++...|+. ++.+..+|+..++ +..++||+|
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v 154 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--CEDNSYDFI 154 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--SCTTCEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC--CCCCCEeEE
Confidence 667899999999999999999998763 58999999999999999999999984 6999999998875 334789999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc---------------
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT--------------- 318 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~--------------- 318 (384)
++.-. +..-+ . ...+|..+.++| ||||+++.++......
T Consensus 155 ~~~~~------l~~~~------~----------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (297)
T 2o57_A 155 WSQDA------FLHSP------D----------KLKVFQECARVL----KPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208 (297)
T ss_dssp EEESC------GGGCS------C----------HHHHHHHHHHHE----EEEEEEEEEEEEECTTCCGGGGHHHHHHHTC
T ss_pred Eecch------hhhcC------C----------HHHHHHHHHHHc----CCCeEEEEEEeccCCCCchHHHHHHHHHhcC
Confidence 97422 11111 1 235778888876 9999999987543211
Q ss_pred ---ccHHHHHHHHhcCCCEEeec
Q 016730 319 ---ENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 319 ---ENe~vv~~~l~~~~~~l~~~ 338 (384)
-+...+..++++.|++++..
T Consensus 209 ~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 209 HDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp SSCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCeEEEE
Confidence 13344555667778777654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-09 Score=108.96 Aligned_cols=108 Identities=12% Similarity=0.089 Sum_probs=84.6
Q ss_pred CCCCcccccceEEEeCCcCc---chhh---hcCCCCCceEEEeccCCChHHHHHHHHccC--------------------
Q 016730 149 IGATPEYMAGFYMLQSASSF---LPVM---ALAPQEKERVIDMAAAPGGKTTYIAALMKN-------------------- 202 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~---l~~~---~L~~~~g~~VLD~cagpGgkt~~la~~~~~-------------------- 202 (384)
+...+.++.|+...|..+.. +++. +....++.+|||.|||+|+.++.++....+
T Consensus 160 ~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~ 239 (385)
T 3ldu_A 160 TTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKK 239 (385)
T ss_dssp SCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHH
T ss_pred cCCChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHH
Confidence 34457788898877766554 3332 345678999999999999999888776432
Q ss_pred -----------------CceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 203 -----------------TGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 203 -----------------~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
...|+++|+|+..++.+++|+...|+. ++.+.+.|+.+++. ...||+|++|||.
T Consensus 240 ~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~---~~~~D~Iv~NPPy 311 (385)
T 3ldu_A 240 IWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS---EDEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC---SCBSCEEEECCCC
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc---CCCCcEEEECCCC
Confidence 147999999999999999999999996 69999999988753 2589999999994
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-11 Score=112.37 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=85.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--CC---------ceEEEEecCCCCcccc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV---------TNTIVCNYDGNELPKV 244 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g~---------~~v~~~~~D~~~~~~~ 244 (384)
..++.+|||+|||+|+.+..+++. + ..+|+++|+|+..++.+++++ ++ ++ .++.++.+|+..+...
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence 345689999999999999988876 3 479999999999999999998 55 32 4689999998764322
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
.++||+|++|+|+. .|. + .. + .+.+++..+.+.| +|||.++..+++..
T Consensus 150 --~~~fD~Ii~d~~~~-~~~----~--------~~---l--~~~~~l~~~~~~L----~pgG~lv~~~~~~~ 197 (281)
T 1mjf_A 150 --NRGFDVIIADSTDP-VGP----A--------KV---L--FSEEFYRYVYDAL----NNPGIYVTQAGSVY 197 (281)
T ss_dssp --CCCEEEEEEECCCC-C--------------------T--TSHHHHHHHHHHE----EEEEEEEEEEEETT
T ss_pred --cCCeeEEEECCCCC-CCc----c--------hh---h--hHHHHHHHHHHhc----CCCcEEEEEcCCcc
Confidence 36899999999852 110 0 00 0 1345777778875 99999999887753
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-10 Score=100.18 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=83.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++ +|||+|||+|..+..++.. ...|+++|+++.+++.+++++...|. ++.+...|+..++ +..+.||.|++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~~~fD~v~~ 100 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFD--IVADAWEGIVS 100 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBS--CCTTTCSEEEE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcC--CCcCCccEEEE
Confidence 4567 9999999999999888775 35899999999999999999998887 7888899998765 23478999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
... ..... ...++|..+.++| ||||+++.++.+.
T Consensus 101 ~~~---------------~~~~~-------~~~~~l~~~~~~L----~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 101 IFC---------------HLPSS-------LRQQLYPKVYQGL----KPGGVFILEGFAP 134 (202)
T ss_dssp ECC---------------CCCHH-------HHHHHHHHHHTTC----CSSEEEEEEEECT
T ss_pred Ehh---------------cCCHH-------HHHHHHHHHHHhc----CCCcEEEEEEecc
Confidence 321 11222 2356778888875 9999999987654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=105.53 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=98.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...|..++.+...|+..++. ..+.||+|+++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~v~~~ 153 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--EPDSYDVIWIQ 153 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--CSSCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--CCCCEEEEEEc
Confidence 368899999999999988877754 35899999999999999999888766678898999877653 23689999986
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc-----------cccHHHHH
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV-----------TENEAVID 325 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~-----------~ENe~vv~ 325 (384)
.. +. ..... ....+|..+.++| ||||+++.++..... .-+.+.+.
T Consensus 154 ~~------l~-------~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (241)
T 2ex4_A 154 WV------IG-------HLTDQ-------HLAEFLRRCKGSL----RPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR 209 (241)
T ss_dssp SC------GG-------GSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHH
T ss_pred ch------hh-------hCCHH-------HHHHHHHHHHHhc----CCCeEEEEEEccCCCcceecccCCcccCCHHHHH
Confidence 32 11 11111 1246788888876 999999997753321 11566677
Q ss_pred HHHhcCCCEEeec
Q 016730 326 YALKKRDVKLVPC 338 (384)
Q Consensus 326 ~~l~~~~~~l~~~ 338 (384)
.++++.|++++..
T Consensus 210 ~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 210 RIICSAGLSLLAE 222 (241)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHcCCeEEEe
Confidence 7788888877664
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-11 Score=123.64 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=112.5
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCC-----------------ceEEEEeCCHHHHHHH
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----------------GLIYANEMKASRLKSL 219 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~-----------------g~V~a~D~~~~rl~~l 219 (384)
.|.|+--..-+.+.+.++.+.+|.+|||.|||+|+..+.++..+... ..++|+|+++..+..+
T Consensus 148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 45555444444566777889999999999999999998888776421 3699999999999999
Q ss_pred HHHHHHcCCce-----EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHH
Q 016730 220 TANLHRMGVTN-----TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294 (384)
Q Consensus 220 ~~n~~r~g~~~-----v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a 294 (384)
+.|+...|+.+ +.+.++|+...+. ....+||+|+.|||+++........+.....+ ..+..++.++
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~-~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~--------~~~~~Fl~~~ 298 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNPPFGSAAGTNITRTFVHPTS--------NKQLCFMQHI 298 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHH-HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCS--------CHHHHHHHHH
T ss_pred HHHHHHhCCCccccccCCeEeCCCccccc-ccccCCeEEEECCCcccccchhhHhhcCCCCC--------chHHHHHHHH
Confidence 99999888876 7788899876432 12368999999999988754321111111111 1234578888
Q ss_pred HHchhccCCCCcEEEEEecc--CCccccHHHHH-HHHhcCC
Q 016730 295 IDMVDANSKSGGYIVYSTCS--IMVTENEAVID-YALKKRD 332 (384)
Q Consensus 295 ~~~L~~~lkpGG~lvYsTCS--i~~~ENe~vv~-~~l~~~~ 332 (384)
+++| ||||++++.+.. ++....+..+. +++++..
T Consensus 299 l~~L----k~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~~ 335 (541)
T 2ar0_A 299 IETL----HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 335 (541)
T ss_dssp HHHE----EEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEE
T ss_pred HHHh----CCCCEEEEEecCcceecCcHHHHHHHHHhhcCC
Confidence 9886 999999988653 22333344554 6666543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=102.00 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=83.6
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.+.+.++.+|||+|||+|..+..+++. ...|+++|+++..++.+++++. .++.+..+|+..++.. +.||.
T Consensus 40 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---~~fD~ 109 (220)
T 3hnr_A 40 DVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---TSIDT 109 (220)
T ss_dssp HHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---SCCSE
T ss_pred HhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---CCeEE
Confidence 344568899999999999999988886 3689999999999999988765 4678889999887532 78999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
|++... +. ..... .+..+|..+.+.| ||||.++.++.....
T Consensus 110 v~~~~~------l~-------~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~~ 150 (220)
T 3hnr_A 110 IVSTYA------FH-------HLTDD-------EKNVAIAKYSQLL----NKGGKIVFADTIFAD 150 (220)
T ss_dssp EEEESC------GG-------GSCHH-------HHHHHHHHHHHHS----CTTCEEEEEEECBSS
T ss_pred EEECcc------hh-------cCChH-------HHHHHHHHHHHhc----CCCCEEEEEeccccC
Confidence 998642 11 11111 1145778888875 999999998755443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-11 Score=108.80 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=83.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCC-HHHHHHH---HHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMK-ASRLKSL---TANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~-~~rl~~l---~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+++++|||+|||+|..+..+++..+ ...|+|+|+| +.+++.+ ++++.+.|+.++.+..+|+..++.... ..||
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~-d~v~ 99 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELK-NIAD 99 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGT-TCEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhcc-CeEE
Confidence 46789999999999999998887543 4789999999 5555555 888888899999999999998864332 5688
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|.+..|- +............+|..+.++| ||||+++.++
T Consensus 100 ~i~~~~~~-----------------~~~~~~~~~~~~~~l~~~~r~L----kpGG~l~i~~ 139 (225)
T 3p2e_A 100 SISILFPW-----------------GTLLEYVIKPNRDILSNVADLA----KKEAHFEFVT 139 (225)
T ss_dssp EEEEESCC-----------------HHHHHHHHTTCHHHHHHHHTTE----EEEEEEEEEE
T ss_pred EEEEeCCC-----------------cHHhhhhhcchHHHHHHHHHhc----CCCcEEEEEE
Confidence 88887661 1111111111235677777775 9999999844
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-10 Score=98.97 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=83.9
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
...++.+|||+|||+|..+..++.. ...|+++|+++..++.+++ .|..++.++.+|+..+ ...++||+|+
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~---~~~~~~D~v~ 112 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW---TPDRQWDAVF 112 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC---CCSSCEEEEE
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC---CCCCceeEEE
Confidence 3667889999999999999999887 3689999999999999887 6777899999999876 2347899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+.. ++.. .... ....+|..+.+.| ||||++++++.+-
T Consensus 113 ~~~------~l~~-------~~~~-------~~~~~l~~~~~~L----~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 113 FAH------WLAH-------VPDD-------RFEAFWESVRSAV----APGGVVEFVDVTD 149 (218)
T ss_dssp EES------CGGG-------SCHH-------HHHHHHHHHHHHE----EEEEEEEEEEECC
T ss_pred Eec------hhhc-------CCHH-------HHHHHHHHHHHHc----CCCeEEEEEeCCC
Confidence 853 2111 1111 1245788888886 9999999998765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-10 Score=102.29 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=94.9
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
...++.+|||+|||+|..+..+++. ...|+++|+++..++.+++++ ++.+..+|+..++ ..+.||+|+
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~---~~~~fD~v~ 107 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD---AIDAYDAVW 107 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC---CCSCEEEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC---CCCcEEEEE
Confidence 3457889999999999999988876 358999999999999999887 3445677877766 247899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc-----------ccHHH
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-----------ENEAV 323 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~-----------ENe~v 323 (384)
+... + .....++ ...+|..+.+.| ||||+++.+++..... -+.+.
T Consensus 108 ~~~~------l-------~~~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
T 3e23_A 108 AHAC------L-------LHVPRDE-------LADVLKLIWRAL----KPGGLFYASYKSGEGEGRDKLARYYNYPSEEW 163 (211)
T ss_dssp ECSC------G-------GGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEECCSSCEECTTSCEECCCCHHH
T ss_pred ecCc------h-------hhcCHHH-------HHHHHHHHHHhc----CCCcEEEEEEcCCCcccccccchhccCCCHHH
Confidence 8532 1 1112222 345788888876 9999999987765432 25667
Q ss_pred HHHHHhcCC-CEEeec
Q 016730 324 IDYALKKRD-VKLVPC 338 (384)
Q Consensus 324 v~~~l~~~~-~~l~~~ 338 (384)
+..+++..| ++++..
T Consensus 164 ~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 164 LRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHCCCSEEEE
T ss_pred HHHHHHhCCCcEEEEE
Confidence 777888878 887664
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-12 Score=125.95 Aligned_cols=155 Identities=14% Similarity=0.043 Sum_probs=101.6
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D 237 (384)
|.|+--..-+..++..+.+.++.+|||+|||+|+.+..+++..+....|+|+|+++..++.+ .++.+.++|
T Consensus 19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D 89 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILAD 89 (421)
T ss_dssp --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESC
T ss_pred ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCC
Confidence 33333333334455556655677999999999999999998874447999999999988665 467888999
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----------HHHHHHHHHHHHHchhccCCCCcE
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----------SYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----------~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
...... .++||+|+++||+...+...+-+ ........... ...+..++..+.++| +|||+
T Consensus 90 ~~~~~~---~~~fD~Ii~NPPy~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~L----k~~G~ 159 (421)
T 2ih2_A 90 FLLWEP---GEAFDLILGNPPYGIVGEASKYP---IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL----KPGGV 159 (421)
T ss_dssp GGGCCC---SSCEEEEEECCCCCCBSCTTTCS---BCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE----EEEEE
T ss_pred hhhcCc---cCCCCEEEECcCccCcccccccc---cccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHh----CCCCE
Confidence 876542 26899999999997766421100 00001111000 124567899999986 99999
Q ss_pred EEEEeccC--CccccHHHHHHHHhcC
Q 016730 308 IVYSTCSI--MVTENEAVIDYALKKR 331 (384)
Q Consensus 308 lvYsTCSi--~~~ENe~vv~~~l~~~ 331 (384)
+++.+++- .....+.+.++++++.
T Consensus 160 ~~~i~p~~~l~~~~~~~lr~~l~~~~ 185 (421)
T 2ih2_A 160 LVFVVPATWLVLEDFALLREFLAREG 185 (421)
T ss_dssp EEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred EEEEEChHHhcCccHHHHHHHHHhcC
Confidence 99988763 2333455555555543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-10 Score=101.54 Aligned_cols=108 Identities=13% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..++... ..|+++|+|+..++.++++++..+ .++.++.+|+..++ ...++||.|++.
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~--~~~~~~D~v~~~ 110 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLS--FEDKTFDYVIFI 110 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCC--SCTTCEEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCC--CCCCcEEEEEEc
Confidence 358899999999999998888763 389999999999999999999887 67889999998765 233689999997
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.+. . .....+ ..++|..+.+.| ||||+++..++.
T Consensus 111 ~~~------------~-~~~~~~-------~~~~l~~~~~~L----~~gG~l~~~~~~ 144 (227)
T 1ve3_A 111 DSI------------V-HFEPLE-------LNQVFKEVRRVL----KPSGKFIMYFTD 144 (227)
T ss_dssp SCG------------G-GCCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred Cch------------H-hCCHHH-------HHHHHHHHHHHc----CCCcEEEEEecC
Confidence 651 0 111111 245778888876 999999998775
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.6e-10 Score=104.32 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=98.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...|+ .++.++.+|+..++.. ..++||+|++.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~v~~~ 143 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-LETPVDLILFH 143 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-CSSCEEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-cCCCceEEEEC
Confidence 4779999999999999988886 36899999999999999999999998 6799999999887643 34789999985
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc-------------------
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV------------------- 317 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~------------------- 317 (384)
.. +. +...+ .++|..+.++| ||||+++.++.+...
T Consensus 144 ~~------l~------~~~~~----------~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (285)
T 4htf_A 144 AV------LE------WVADP----------RSVLQTLWSVL----RPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMP 197 (285)
T ss_dssp SC------GG------GCSCH----------HHHHHHHHHTE----EEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCC
T ss_pred ch------hh------cccCH----------HHHHHHHHHHc----CCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcc
Confidence 43 11 11111 34788888886 999999988753211
Q ss_pred -----------cccHHHHHHHHhcCCCEEeec
Q 016730 318 -----------TENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 318 -----------~ENe~vv~~~l~~~~~~l~~~ 338 (384)
--..+.+..+++..|++++..
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~ 229 (285)
T 4htf_A 198 KKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGK 229 (285)
T ss_dssp CC----CCCSCCBCHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCCCCCCHHHHHHHHHHCCCceeee
Confidence 112355667778888887754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-10 Score=107.58 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=86.0
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+...++.+|||+|||+|..+..++.. ...|+++|+|+..++.+++++...|+ ++.+..+|+..++. .+.||
T Consensus 114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---~~~fD 186 (286)
T 3m70_A 114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---QENYD 186 (286)
T ss_dssp HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---CSCEE
T ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---cCCcc
Confidence 3344457899999999999999998886 35899999999999999999999998 89999999887654 37899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|++..+.. ..... ....+|..+.+.| ||||++++++
T Consensus 187 ~i~~~~~~~-------------~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~ 223 (286)
T 3m70_A 187 FIVSTVVFM-------------FLNRE-------RVPSIIKNMKEHT----NVGGYNLIVA 223 (286)
T ss_dssp EEEECSSGG-------------GSCGG-------GHHHHHHHHHHTE----EEEEEEEEEE
T ss_pred EEEEccchh-------------hCCHH-------HHHHHHHHHHHhc----CCCcEEEEEE
Confidence 999976421 11111 1245788888886 9999976643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.6e-11 Score=103.02 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=90.7
Q ss_pred chhhhcCC--CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC
Q 016730 169 LPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 169 l~~~~L~~--~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~ 246 (384)
+.+..+.. .++.+|||+|||+|..+..+++.. .|+|+|+|+.+++. ..++.++++|+.... .
T Consensus 12 ~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~---~ 75 (170)
T 3q87_B 12 TLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLCSI---N 75 (170)
T ss_dssp HHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTTTB---C
T ss_pred HHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhhhc---c
Confidence 33444554 678899999999999998877653 89999999999887 356788899987732 2
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
.++||.|++++|.....-. .. +..... ..+++..+++. + |||+++.++.+. .+.+.+..
T Consensus 76 ~~~fD~i~~n~~~~~~~~~----~~-~~~~~~--------~~~~~~~~~~~----l-pgG~l~~~~~~~---~~~~~l~~ 134 (170)
T 3q87_B 76 QESVDVVVFNPPYVPDTDD----PI-IGGGYL--------GREVIDRFVDA----V-TVGMLYLLVIEA---NRPKEVLA 134 (170)
T ss_dssp GGGCSEEEECCCCBTTCCC----TT-TBCCGG--------GCHHHHHHHHH----C-CSSEEEEEEEGG---GCHHHHHH
T ss_pred cCCCCEEEECCCCccCCcc----cc-ccCCcc--------hHHHHHHHHhh----C-CCCEEEEEEecC---CCHHHHHH
Confidence 2689999999985322110 00 111111 12355566665 4 999999887655 45566667
Q ss_pred HHhcCCCEEeec
Q 016730 327 ALKKRDVKLVPC 338 (384)
Q Consensus 327 ~l~~~~~~l~~~ 338 (384)
++++.+++.+.+
T Consensus 135 ~l~~~gf~~~~~ 146 (170)
T 3q87_B 135 RLEERGYGTRIL 146 (170)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHCCCcEEEE
Confidence 777788877654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-10 Score=103.00 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=97.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+...++.+|||+|||+|..+..++... ...|+++|+++..++.+++++... .++.+..+|+..++. ..+.||+|
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--~~~~fD~v 162 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--PPNTYDLI 162 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--CSSCEEEE
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--CCCCeEEE
Confidence 345678999999999999999888875 357999999999999999987654 678898999877652 34689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc------------ccH
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT------------ENE 321 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~------------ENe 321 (384)
++... + ...... ...++|..+.++| ||||++++++...... -..
T Consensus 163 ~~~~~------l-------~~~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 218 (254)
T 1xtp_A 163 VIQWT------A-------IYLTDA-------DFVKFFKHCQQAL----TPNGYIFFKENCSTGDRFLVDKEDSSLTRSD 218 (254)
T ss_dssp EEESC------G-------GGSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEEBC--CCEEEETTTTEEEBCH
T ss_pred EEcch------h-------hhCCHH-------HHHHHHHHHHHhc----CCCeEEEEEecCCCcccceecccCCcccCCH
Confidence 97431 1 111211 1356788888876 9999999988532211 134
Q ss_pred HHHHHHHhcCCCEEeec
Q 016730 322 AVIDYALKKRDVKLVPC 338 (384)
Q Consensus 322 ~vv~~~l~~~~~~l~~~ 338 (384)
+.+..++++.|++++..
T Consensus 219 ~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 219 IHYKRLFNESGVRVVKE 235 (254)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 66667777778777654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=108.24 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=86.1
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---ceEEEEecCCCCcccccCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---TNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---~~v~~~~~D~~~~~~~~~~~~f 250 (384)
+.+.+ .+|||+|||+|..+..+++. ...|+++|+|+.+++.+++++...++ .++.++.+|+..++. .+.|
T Consensus 79 ~~~~~-~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~f 151 (299)
T 3g2m_A 79 TGPVS-GPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---DKRF 151 (299)
T ss_dssp HCCCC-SCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---SCCE
T ss_pred hCCCC-CcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---CCCc
Confidence 34444 49999999999999988876 35899999999999999999998875 579999999998764 3789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|.|++... + ....++. ...++|..+.+.| ||||+|+.++....
T Consensus 152 D~v~~~~~-----~-------~~~~~~~-------~~~~~l~~~~~~L----~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 152 GTVVISSG-----S-------INELDEA-------DRRGLYASVREHL----EPGGKFLLSLAMSE 194 (299)
T ss_dssp EEEEECHH-----H-------HTTSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEECCH
T ss_pred CEEEECCc-----c-------cccCCHH-------HHHHHHHHHHHHc----CCCcEEEEEeecCc
Confidence 99986211 1 1111222 2356788888886 99999999887653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-10 Score=106.59 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=90.3
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.++...++.+|||+|||+|..+..+++..++...|+++|+|+..++.+++++...+. ++.+...|+..++. .++||
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~---~~~fD 91 (284)
T 3gu3_A 16 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL---NDKYD 91 (284)
T ss_dssp TTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC---SSCEE
T ss_pred HHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc---CCCee
Confidence 344567889999999999999999998876557999999999999999999988776 89999999998653 26899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.|++... +. +.... .++|..+.+.| ||||+++..++.
T Consensus 92 ~v~~~~~------l~------~~~~~----------~~~l~~~~~~L----kpgG~l~~~~~~ 128 (284)
T 3gu3_A 92 IAICHAF------LL------HMTTP----------ETMLQKMIHSV----KKGGKIICFEPH 128 (284)
T ss_dssp EEEEESC------GG------GCSSH----------HHHHHHHHHTE----EEEEEEEEEECC
T ss_pred EEEECCh------hh------cCCCH----------HHHHHHHHHHc----CCCCEEEEEecc
Confidence 9998643 11 11111 35788888886 999999988765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-10 Score=105.40 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=87.0
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--CCceEEEEecCCCCccccc----CCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GVTNTIVCNYDGNELPKVL----GLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g~~~v~~~~~D~~~~~~~~----~~~~ 249 (384)
..++.+|||+|||+|..+..+++.......|+|+|+|+..++.++++++.. +..++.++++|+..++... ..++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 357899999999999999999987645579999999999999999999987 3467999999998876321 1268
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
||.|++... +.+. . ..+++..+.+.| ||||+|++.+++
T Consensus 114 fD~V~~~~~------------l~~~-~----------~~~~l~~~~~~L----kpgG~l~i~~~~ 151 (299)
T 3g5t_A 114 IDMITAVEC------------AHWF-D----------FEKFQRSAYANL----RKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEEESC------------GGGS-C----------HHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred eeEEeHhhH------------HHHh-C----------HHHHHHHHHHhc----CCCcEEEEEecC
Confidence 999998532 1122 1 235677788876 999999885554
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=112.71 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=84.7
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH-------HHcCC--ceEEEEecCCCCc
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL-------HRMGV--TNTIVCNYDGNEL 241 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~-------~r~g~--~~v~~~~~D~~~~ 241 (384)
...+.+++|++|||+|||+|..+..++...+ ...|+|+|+++..++.+++++ +.+|+ .++.++++|+..+
T Consensus 166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l 244 (438)
T 3uwp_A 166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 244 (438)
T ss_dssp HHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence 4456788999999999999999999887754 357999999999999888765 44576 5899999999987
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.......||+|+++++|- .++ ..+.|...++. |||||+||.+..
T Consensus 245 p~~d~~~~aDVVf~Nn~~F---------------~pd--------l~~aL~Ei~Rv----LKPGGrIVssE~ 289 (438)
T 3uwp_A 245 EWRERIANTSVIFVNNFAF---------------GPE--------VDHQLKERFAN----MKEGGRIVSSKP 289 (438)
T ss_dssp HHHHHHHTCSEEEECCTTC---------------CHH--------HHHHHHHHHTT----SCTTCEEEESSC
T ss_pred ccccccCCccEEEEccccc---------------Cch--------HHHHHHHHHHc----CCCCcEEEEeec
Confidence 5321014799999987741 111 12234555565 599999986533
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=110.42 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=85.4
Q ss_pred cCCCCCceEEEecc------CCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEE-EecCCCCcccccC
Q 016730 174 LAPQEKERVIDMAA------APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNELPKVLG 246 (384)
Q Consensus 174 L~~~~g~~VLD~ca------gpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~-~~~D~~~~~~~~~ 246 (384)
+.+++|++|||+|| |||+ ..++++++..+.|+|+|+++. +.++.+ +.+|+..++..
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~-- 121 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA-- 121 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS--
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc--
Confidence 46788999999999 7788 566777775689999999987 245677 89999876421
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
++||+|++|+++..+|....+.. .. ..+..++|..+.+.| ||||+++...-. ....+ .+..
T Consensus 122 -~~fD~Vvsn~~~~~~g~~~~d~~----~~-------~~l~~~~l~~a~r~L----kpGG~~v~~~~~--~~~~~-~l~~ 182 (290)
T 2xyq_A 122 -NKWDLIISDMYDPRTKHVTKEND----SK-------EGFFTYLCGFIKQKL----ALGGSIAVKITE--HSWNA-DLYK 182 (290)
T ss_dssp -SCEEEEEECCCCCC---CCSCCC----CC-------CTHHHHHHHHHHHHE----EEEEEEEEEECS--SSCCH-HHHH
T ss_pred -CcccEEEEcCCcccccccccccc----ch-------HHHHHHHHHHHHHhc----CCCcEEEEEEec--cCCHH-HHHH
Confidence 67999999988777775533210 01 012346788888886 999999986532 23333 4445
Q ss_pred HHhcCCCEE
Q 016730 327 ALKKRDVKL 335 (384)
Q Consensus 327 ~l~~~~~~l 335 (384)
++++.++..
T Consensus 183 ~l~~~GF~~ 191 (290)
T 2xyq_A 183 LMGHFSWWT 191 (290)
T ss_dssp HHTTEEEEE
T ss_pred HHHHcCCcE
Confidence 666665543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=107.95 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=82.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-----------------------------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----------------------------- 228 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~----------------------------- 228 (384)
++.+|||+|||+|..+..++...+. ..|+|+|+|+.+++.+++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 6889999999999999999998754 6999999999999999999877653
Q ss_pred -----------------------------ceEEEEecCCCCcccc---cCCCCCCEEEEcCCCCCCCcCCCCchhhccCC
Q 016730 229 -----------------------------TNTIVCNYDGNELPKV---LGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276 (384)
Q Consensus 229 -----------------------------~~v~~~~~D~~~~~~~---~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~ 276 (384)
.++.+..+|....... ...+.||+|++... ++|.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v------------l~~i-- 190 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL------------TKWV-- 190 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC------------HHHH--
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH------------HHHh--
Confidence 3688999998754311 23478999998432 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 277 ~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+..-.....+++..+.++| ||||+|+..+.
T Consensus 191 --hl~~~~~~~~~~l~~~~~~L----kpGG~lil~~~ 221 (292)
T 3g07_A 191 --HLNWGDEGLKRMFRRIYRHL----RPGGILVLEPQ 221 (292)
T ss_dssp --HHHHHHHHHHHHHHHHHHHE----EEEEEEEEECC
T ss_pred --hhcCCHHHHHHHHHHHHHHh----CCCcEEEEecC
Confidence 00011123466888888886 99999998754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=107.41 Aligned_cols=107 Identities=8% Similarity=0.091 Sum_probs=82.4
Q ss_pred CCCcccccceEEEeCCcCc---chh---hhcCCCCCceEEEeccCCChHHHHHHHHccC---------------------
Q 016730 150 GATPEYMAGFYMLQSASSF---LPV---MALAPQEKERVIDMAAAPGGKTTYIAALMKN--------------------- 202 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~---l~~---~~L~~~~g~~VLD~cagpGgkt~~la~~~~~--------------------- 202 (384)
...+.++.||-..|..+.. +++ .+....++..|||.|||+|+..+.++....+
T Consensus 160 sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~ 239 (384)
T 3ldg_A 160 TGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEAL 239 (384)
T ss_dssp SSSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHH
T ss_pred cCCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHH
Confidence 3456688887666655542 333 2335678999999999999998877766543
Q ss_pred ----------------CceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 203 ----------------TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 203 ----------------~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
...|+++|+|+.+++.+++|+++.|+.+ +.+.++|+..++.. ..||.|++|||+
T Consensus 240 w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~---~~fD~Iv~NPPY 310 (384)
T 3ldg_A 240 VTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN---KINGVLISNPPY 310 (384)
T ss_dssp HHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC---CCSCEEEECCCC
T ss_pred HHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc---CCcCEEEECCch
Confidence 1469999999999999999999999975 89999999887542 589999999996
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-10 Score=102.61 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.++++ ..++.+..+|+..++ ..++|
T Consensus 26 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~---~~~~f 96 (259)
T 2p35_A 26 LAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK---PAQKA 96 (259)
T ss_dssp HTTCCCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC---CSSCE
T ss_pred HHhcCCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC---ccCCc
Confidence 3445567889999999999999999998874 36899999999999999887 356788899998876 23789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|.|++... +.+... ...+|..+.+.| ||||+++.++..
T Consensus 97 D~v~~~~~------------l~~~~~----------~~~~l~~~~~~L----~pgG~l~~~~~~ 134 (259)
T 2p35_A 97 DLLYANAV------------FQWVPD----------HLAVLSQLMDQL----ESGGVLAVQMPD 134 (259)
T ss_dssp EEEEEESC------------GGGSTT----------HHHHHHHHGGGE----EEEEEEEEEEEC
T ss_pred CEEEEeCc------------hhhCCC----------HHHHHHHHHHhc----CCCeEEEEEeCC
Confidence 99998543 111111 235778888876 999999998753
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.3e-10 Score=98.48 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=94.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
+.+|||+|||+|..+..++.. ...|+++|+++.+++.++++ ..++.++.+|+..++ +..+.||+|++...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLS--DSPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGG--GSCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccc--cCCCCeEEEEehhh
Confidence 889999999999999988886 35899999999999999887 346788899988765 33478999998532
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc------------cccHHHHHH
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV------------TENEAVIDY 326 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~------------~ENe~vv~~ 326 (384)
+..- ..++ ...+|..+.+.| ||||+++.++..... .-..+.+..
T Consensus 112 ------l~~~-------~~~~-------~~~~l~~~~~~L----~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (203)
T 3h2b_A 112 ------LIHM-------GPGE-------LPDALVALRMAV----EDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQ 167 (203)
T ss_dssp ------STTC-------CTTT-------HHHHHHHHHHTE----EEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHH
T ss_pred ------HhcC-------CHHH-------HHHHHHHHHHHc----CCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHH
Confidence 1111 1111 245778888886 999999998865432 123666777
Q ss_pred HHhcCCCEEeecC
Q 016730 327 ALKKRDVKLVPCG 339 (384)
Q Consensus 327 ~l~~~~~~l~~~~ 339 (384)
++++.|++++...
T Consensus 168 ~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 168 ALETAGFQVTSSH 180 (203)
T ss_dssp HHHHTTEEEEEEE
T ss_pred HHHHCCCcEEEEE
Confidence 8888898887653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.7e-10 Score=101.21 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=96.4
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+.+|||+|||+|..+..++. ....|+++|+++..++.+++++...+. .++.+..+|+..++. ...||+|++..
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~ 140 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP---TELFDLIFDYV 140 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC---SSCEEEEEEES
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC---CCCeeEEEECh
Confidence 45999999999998887755 346899999999999999999887543 569999999988653 25899999743
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc-------cHHHHHHHHhc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE-------NEAVIDYALKK 330 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E-------Ne~vv~~~l~~ 330 (384)
.. .. ..+++ ...+|..+.++| ||||+++..+.+..... ..+.+..+++.
T Consensus 141 ~l------~~-------~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 196 (235)
T 3lcc_A 141 FF------CA-------IEPEM-------RPAWAKSMYELL----KPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVP 196 (235)
T ss_dssp ST------TT-------SCGGG-------HHHHHHHHHHHE----EEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGG
T ss_pred hh------hc-------CCHHH-------HHHHHHHHHHHC----CCCcEEEEEEecccccCCCCCccCCHHHHHHHHHH
Confidence 21 11 11111 245778888876 99999998776554322 45677788888
Q ss_pred CCCEEeec
Q 016730 331 RDVKLVPC 338 (384)
Q Consensus 331 ~~~~l~~~ 338 (384)
.+++++.+
T Consensus 197 ~Gf~~~~~ 204 (235)
T 3lcc_A 197 IGFKAVSV 204 (235)
T ss_dssp GTEEEEEE
T ss_pred cCCeEEEE
Confidence 88887765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=103.24 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=87.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+.++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.+++++...|. .++.++.+|+...+.. ..+.||+|+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~v~ 138 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVIS 138 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-CCCCcCEEE
Confidence 357899999999999999887775 335899999999999999999998887 4789999999876531 247899999
Q ss_pred EcCCCCCCCcCCCCchhhcc-CCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 255 LDAPCSGTGVISKDESVKTS-KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~-~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+... + .+. .... ...++|..+.++| ||||+++.++++
T Consensus 139 ~~~~------l------~~~~~~~~-------~~~~~l~~~~~~L----kpgG~l~~~~~~ 176 (298)
T 1ri5_A 139 SQFS------F------HYAFSTSE-------SLDIAQRNIARHL----RPGGYFIMTVPS 176 (298)
T ss_dssp EESC------G------GGGGSSHH-------HHHHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred ECch------h------hhhcCCHH-------HHHHHHHHHHHhc----CCCCEEEEEECC
Confidence 8632 1 010 1122 2356788888886 999999998875
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=99.58 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=87.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++... ..|+++|+++.+++.+++++.. ..++.+..+|+..++ +..+.||+|++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~--~~~~~fD~v~~~ 114 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLD--FPSASFDVVLEK 114 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCC--SCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCC--CCCCcccEEEEC
Confidence 5788999999999999998887632 3899999999999999998764 356888899998764 334689999987
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.+.... ...++ ..|...... .....++|..+.++| ||||++++++.+.
T Consensus 115 ~~~~~~--~~~~~-~~~~~~~~~----~~~~~~~l~~~~~~L----kpgG~li~~~~~~ 162 (215)
T 2pxx_A 115 GTLDAL--LAGER-DPWTVSSEG----VHTVDQVLSEVSRVL----VPGGRFISMTSAA 162 (215)
T ss_dssp SHHHHH--TTTCS-CTTSCCHHH----HHHHHHHHHHHHHHE----EEEEEEEEEESCC
T ss_pred cchhhh--ccccc-cccccccch----hHHHHHHHHHHHHhC----cCCCEEEEEeCCC
Confidence 653111 00111 123323222 223466888888886 9999999988764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-09 Score=101.05 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=86.5
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHH------HHHHHHHHHHHcCC-ceEEEEecC-CCCc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKAS------RLKSLTANLHRMGV-TNTIVCNYD-GNEL 241 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~------rl~~l~~n~~r~g~-~~v~~~~~D-~~~~ 241 (384)
....+.+++|.+|||+|||+|..+..++...+..+.|+++|+|+. .++.+++++...|+ .++.+...| ....
T Consensus 35 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 114 (275)
T 3bkx_A 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD 114 (275)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc
Confidence 344567789999999999999999999998754579999999997 89999999998888 579998888 3222
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
...+..++||+|++..+. .+...+. .++... +.+ ++|||+++.++.+..
T Consensus 115 ~~~~~~~~fD~v~~~~~l------------~~~~~~~----------~~~~~~-~~l---~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 115 LGPIADQHFDRVVLAHSL------------WYFASAN----------ALALLF-KNM---AAVCDHVDVAEWSMQ 163 (275)
T ss_dssp CGGGTTCCCSEEEEESCG------------GGSSCHH----------HHHHHH-HHH---TTTCSEEEEEEECSS
T ss_pred cCCCCCCCEEEEEEccch------------hhCCCHH----------HHHHHH-HHH---hCCCCEEEEEEecCC
Confidence 112334789999986441 1111111 133333 333 477999999876654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=109.12 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=82.9
Q ss_pred CCCcccccceEEEeCCcCc---chh---hhcCCCCCceEEEeccCCChHHHHHHHHccC---------------------
Q 016730 150 GATPEYMAGFYMLQSASSF---LPV---MALAPQEKERVIDMAAAPGGKTTYIAALMKN--------------------- 202 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~---l~~---~~L~~~~g~~VLD~cagpGgkt~~la~~~~~--------------------- 202 (384)
..-+.++.||-..|.++.. +++ .+....++..|||.|||+|+..+.++....+
T Consensus 167 sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~ 246 (393)
T 3k0b_A 167 SGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQV 246 (393)
T ss_dssp SSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHH
T ss_pred CCCcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHH
Confidence 3445677887555554433 222 3345678899999999999998887776543
Q ss_pred ----------------CceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 203 ----------------TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 203 ----------------~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
...|+++|+|+.+++.+++|+++.|+.+ +.+.++|+..++. ...||+|++|||.
T Consensus 247 w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~---~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 247 WADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT---EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC---CCCSCEEEECCCC
T ss_pred HHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC---CCCCCEEEECCCC
Confidence 1469999999999999999999999974 8999999988753 2589999999995
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-09 Score=100.38 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=77.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++. ...|+++|+|+.+++.+++++. ++.++.+|+..++. .+.||.|++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~---~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL---GRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC---SCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc---cCCcCEEEEc
Confidence 35789999999999999887765 3589999999999999988753 67888999988764 3789999984
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.. ++ .+..++++ ...+|..+.+.| ||||+++.++
T Consensus 118 ~~-----~l------~~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~~ 151 (263)
T 3pfg_A 118 FS-----SI------GHLAGQAE-------LDAALERFAAHV----LPDGVVVVEP 151 (263)
T ss_dssp TT-----GG------GGSCHHHH-------HHHHHHHHHHTE----EEEEEEEECC
T ss_pred Cc-----hh------hhcCCHHH-------HHHHHHHHHHhc----CCCcEEEEEe
Confidence 31 11 12222222 345778888886 9999999864
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=97.96 Aligned_cols=112 Identities=17% Similarity=0.078 Sum_probs=83.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..++... ...|+++|+|+.+++.+++++...+ .++.+...|+..++ +..+.||.|++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~--~~~~~fD~v~~ 95 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLP--FKDESMSFVYS 95 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCC--SCTTCEEEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCC--CCCCceeEEEE
Confidence 4568899999999999765554432 3689999999999999999998877 36778889998765 23478999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
... + ......+ ..+++..+.+.| ||||++++++.+..
T Consensus 96 ~~~------l-------~~~~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 96 YGT------I-------FHMRKND-------VKEAIDEIKRVL----KPGGLACINFLTTK 132 (209)
T ss_dssp CSC------G-------GGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEETT
T ss_pred cCh------H-------HhCCHHH-------HHHHHHHHHHHc----CCCcEEEEEEeccc
Confidence 432 1 1112222 356778888876 99999999988753
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-09 Score=101.44 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=84.1
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
......+.+.++.+|||+|||+|..+..+++ ..+.|+++|+|+.+++.+++++ .++.+..+|+..++. .
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---~ 115 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---D 115 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---S
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---C
Confidence 3345566778899999999999999998888 3479999999999999998765 467788899988663 3
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
++||.|++... + .+... ...+|..+.+.| ||||+++.++...
T Consensus 116 ~~fD~v~~~~~------l------~~~~d----------~~~~l~~~~~~L----kpgG~l~~~~~~~ 157 (279)
T 3ccf_A 116 KPLDAVFSNAM------L------HWVKE----------PEAAIASIHQAL----KSGGRFVAEFGGK 157 (279)
T ss_dssp SCEEEEEEESC------G------GGCSC----------HHHHHHHHHHHE----EEEEEEEEEEECT
T ss_pred CCcCEEEEcch------h------hhCcC----------HHHHHHHHHHhc----CCCcEEEEEecCC
Confidence 68999998542 1 11111 134677788876 9999999877543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=100.28 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=81.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++. ..|+++|+++.+++.+++++...+ .++.+...|+..++. . ++||.|++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--~-~~fD~v~~~ 103 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL--P-EPVDAITIL 103 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC--S-SCEEEEEEC
T ss_pred CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC--C-CCcCEEEEe
Confidence 46789999999999988877664 689999999999999999998877 468888899877643 2 689999985
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.. + +.+..+..+ ..++|..+.++| ||||+++.++.+
T Consensus 104 ~~-----~------~~~~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~~ 139 (243)
T 3d2l_A 104 CD-----S------LNYLQTEAD-------VKQTFDSAARLL----TDGGKLLFDVHS 139 (243)
T ss_dssp TT-----G------GGGCCSHHH-------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred CC-----c------hhhcCCHHH-------HHHHHHHHHHhc----CCCeEEEEEcCC
Confidence 31 1 112222222 245778888876 999999987653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.7e-10 Score=103.27 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=89.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--C------------------------
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V------------------------ 228 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--~------------------------ 228 (384)
.+.+|.+|||+|||+|..+..++.. +...|+|+|+|+.+++.++++++... +
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4567899999999999876654433 22479999999999999998875431 0
Q ss_pred ---ceEE-EEecCCCCcccc--cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccC
Q 016730 229 ---TNTI-VCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (384)
Q Consensus 229 ---~~v~-~~~~D~~~~~~~--~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l 302 (384)
.++. ++.+|....... ...++||+|++-- + ...+........++|.++.++|
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~------~------------l~~i~~~~~~~~~~l~~i~r~L---- 187 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL------A------------MECACCSLDAYRAALCNLASLL---- 187 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES------C------------HHHHCSSHHHHHHHHHHHHTTE----
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehH------H------------HHHhcCCHHHHHHHHHHHHHHc----
Confidence 1233 778888874211 1236899999731 0 0110000012245778888876
Q ss_pred CCCcEEEEEeccCCc------------cccHHHHHHHHhcCCCEEeec
Q 016730 303 KSGGYIVYSTCSIMV------------TENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 303 kpGG~lvYsTCSi~~------------~ENe~vv~~~l~~~~~~l~~~ 338 (384)
||||+|+.++..-.. -=.++.+...+++.|++++..
T Consensus 188 KPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 188 KPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp EEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEE
Confidence 999999999742110 014556677777888877654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-09 Score=98.93 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=82.5
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+...++.+|||+|||+|..+..+++.. ...|+++|+++..++.+++++. ..++.+..+|+..++ +..++||
T Consensus 38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~--~~~~~fD 110 (253)
T 3g5l_A 38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIA--IEPDAYN 110 (253)
T ss_dssp TTCCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCC--CCTTCEE
T ss_pred HhhhccCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCC--CCCCCeE
Confidence 34455678999999999999999888863 2389999999999999988765 457889999988765 2347899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|++... +. +... ..++|..+.++| ||||+++.++.
T Consensus 111 ~v~~~~~------l~------~~~~----------~~~~l~~~~~~L----kpgG~l~~~~~ 146 (253)
T 3g5l_A 111 VVLSSLA------LH------YIAS----------FDDICKKVYINL----KSSGSFIFSVE 146 (253)
T ss_dssp EEEEESC------GG------GCSC----------HHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred EEEEchh------hh------hhhh----------HHHHHHHHHHHc----CCCcEEEEEeC
Confidence 9998532 11 1111 235778888876 99999999754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-10 Score=103.74 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=84.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC-cccccC-CCCCCEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLG-LNTVDRV 253 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~-~~~~~~-~~~fD~V 253 (384)
+.++.+|||+|||+|..+.++++. ...|+++|+++.+++.++++ ..++.++++|+.. ++ +. .++||+|
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~--~~~~~~fD~v 115 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELP--AGLGAPFGLI 115 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCC--TTCCCCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccC--CcCCCCEEEE
Confidence 467899999999999999988876 36899999999999999888 4568888999853 33 22 4789999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
++... +..+|..+.+.| ||||+++.... ..+.+.+...+++.++
T Consensus 116 ~~~~~----------------------------~~~~l~~~~~~L----kpgG~l~~~~~----~~~~~~~~~~l~~~Gf 159 (226)
T 3m33_A 116 VSRRG----------------------------PTSVILRLPELA----APDAHFLYVGP----RLNVPEVPERLAAVGW 159 (226)
T ss_dssp EEESC----------------------------CSGGGGGHHHHE----EEEEEEEEEES----SSCCTHHHHHHHHTTC
T ss_pred EeCCC----------------------------HHHHHHHHHHHc----CCCcEEEEeCC----cCCHHHHHHHHHHCCC
Confidence 98521 123456666765 99999993222 2234456666777777
Q ss_pred EEee
Q 016730 334 KLVP 337 (384)
Q Consensus 334 ~l~~ 337 (384)
+.+.
T Consensus 160 ~~~~ 163 (226)
T 3m33_A 160 DIVA 163 (226)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6544
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-10 Score=117.29 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=112.2
Q ss_pred cceEEEeCCcCcchhhhcC----CCCCceEEEeccCCChHHHHHHHHccC--CceEEEEeCCHHHHHHHHHHHHHcCC--
Q 016730 157 AGFYMLQSASSFLPVMALA----PQEKERVIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSLTANLHRMGV-- 228 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~----~~~g~~VLD~cagpGgkt~~la~~~~~--~g~V~a~D~~~~rl~~l~~n~~r~g~-- 228 (384)
.|.|+--..-+.+.+.++. +.++.+|+|.|||+|+..+.++..+.. ...++|+|+++..+..++.|+...|+
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 275 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI 275 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence 4544443344555666666 678999999999999998888887642 46899999999999999999999998
Q ss_pred ceEEEEecCCCCc--ccccCCCCCCEEEEcCCCCCCCcCCCC--chhhcc----CCHHHHHHHHHHHHHHHHHHHHchhc
Q 016730 229 TNTIVCNYDGNEL--PKVLGLNTVDRVLLDAPCSGTGVISKD--ESVKTS----KSLEDIQKCSYLQKQLILAAIDMVDA 300 (384)
Q Consensus 229 ~~v~~~~~D~~~~--~~~~~~~~fD~VllDaPCSg~G~~~r~--p~~~~~----~~~~~i~~l~~~Q~~iL~~a~~~L~~ 300 (384)
.++.+.++|.... +. ....+||+|+.+||.++..-.... .+.+|. ..+. ...+..++.++++.|
T Consensus 276 ~~~~I~~gDtL~~d~p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~-----s~~~~~Fl~~~l~~L-- 347 (542)
T 3lkd_A 276 ENQFLHNADTLDEDWPT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPK-----SKADFAFLLHGYYHL-- 347 (542)
T ss_dssp GGEEEEESCTTTSCSCC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCT-----TCCHHHHHHHHHHTB--
T ss_pred CccceEecceecccccc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCC-----chhhHHHHHHHHHHh--
Confidence 5688889998765 32 224789999999999854211100 011111 0000 111234788899986
Q ss_pred cCC-CCcEEEEEecc-CCcccc-HHHHH-HHHhcCCCE
Q 016730 301 NSK-SGGYIVYSTCS-IMVTEN-EAVID-YALKKRDVK 334 (384)
Q Consensus 301 ~lk-pGG~lvYsTCS-i~~~EN-e~vv~-~~l~~~~~~ 334 (384)
| +||++++.+-. +....+ +.-+. +++++..++
T Consensus 348 --k~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~ 383 (542)
T 3lkd_A 348 --KQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAID 383 (542)
T ss_dssp --CTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCEE
T ss_pred --CCCceeEEEEecchHhhCCchhHHHHHHHHhCCcee
Confidence 9 99999776543 222223 45555 666665543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=102.64 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=82.4
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.+.+|.+|||+|||+|..+..+++. ...|+|+|+|+.+++.+++++... .-+..+...+.. .+... .+.
T Consensus 37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~-~~~~~-~~~ 110 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAE-IPKEL-AGH 110 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSC-CCGGG-TTC
T ss_pred HHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccc-ccccc-CCC
Confidence 345567788999999999999999998875 368999999999999999988654 222233222220 11111 368
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
||.|+++... .....++ .+..+..+.++ | |||+++.|..--..+-+..++.+..
T Consensus 111 fD~Vv~~~~l-------------~~~~~~~-------~~~~l~~l~~l----L-PGG~l~lS~~~g~~~~d~~~l~~~~ 164 (261)
T 3iv6_A 111 FDFVLNDRLI-------------NRFTTEE-------ARRACLGMLSL----V-GSGTVRASVKLGFYDIDLKLIEYGE 164 (261)
T ss_dssp CSEEEEESCG-------------GGSCHHH-------HHHHHHHHHHH----H-TTSEEEEEEEBSCCHHHHHHHHHHH
T ss_pred ccEEEEhhhh-------------HhCCHHH-------HHHHHHHHHHh----C-cCcEEEEEeccCcccccHHHHHHHH
Confidence 9999997541 1122222 23455666654 6 9999987755433344445555433
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.2e-10 Score=108.14 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=84.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+...++.+|||+|||+|..+..+++. +...|+|+|+++ +++.++++++..|+ .++.++.+|+.+++. +.++||+
T Consensus 60 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~ 134 (340)
T 2fyt_A 60 PHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL--PVEKVDV 134 (340)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--SCSCEEE
T ss_pred hhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--CCCcEEE
Confidence 44567899999999999999888876 335899999996 99999999999998 679999999987642 2368999
Q ss_pred EEEcCC-CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 253 VLLDAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 253 VllDaP-CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|+++.. +.. .+ .. ....+|..+.++| ||||+++.+.|++
T Consensus 135 Ivs~~~~~~l-----~~--------~~-------~~~~~l~~~~~~L----kpgG~lip~~~~~ 174 (340)
T 2fyt_A 135 IISEWMGYFL-----LF--------ES-------MLDSVLYAKNKYL----AKGGSVYPDICTI 174 (340)
T ss_dssp EEECCCBTTB-----TT--------TC-------HHHHHHHHHHHHE----EEEEEEESCEEEE
T ss_pred EEEcCchhhc-----cC--------HH-------HHHHHHHHHHhhc----CCCcEEEcccceE
Confidence 998752 110 00 11 1134666667775 9999999555444
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.2e-10 Score=106.08 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=77.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc------eEEEEecCCC------Ccccc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT------NTIVCNYDGN------ELPKV 244 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~------~v~~~~~D~~------~~~~~ 244 (384)
.+|.+|||+|||+|+-+..++.. +.+.|+|+|+|+.+++.++++....+.. ++.+...|.. .++..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~ 124 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV 124 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence 35889999999999866654442 3368999999999999999998877754 3556666662 22212
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
...++||+|++-- + +.+.+...+ +..+|.++.++| ||||+++.+|+.
T Consensus 125 ~~~~~FD~V~~~~------~------lhy~~~~~~-------~~~~l~~~~r~L----kpGG~~i~~~~~ 171 (302)
T 2vdw_A 125 FYFGKFNIIDWQF------A------IHYSFHPRH-------YATVMNNLSELT----ASGGKVLITTMD 171 (302)
T ss_dssp CCSSCEEEEEEES------C------GGGTCSTTT-------HHHHHHHHHHHE----EEEEEEEEEEEC
T ss_pred ccCCCeeEEEECc------h------HHHhCCHHH-------HHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 2346899998631 1 112222222 146788888886 999999998863
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-09 Score=98.81 Aligned_cols=108 Identities=18% Similarity=0.114 Sum_probs=82.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++. ...|+++|+|+.+++.+++++...|. ++.++.+|+..++. .++||.|++
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---~~~fD~v~~ 111 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---KNEFDAVTM 111 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---CSCEEEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---CCCccEEEE
Confidence 456789999999999999988875 35899999999999999999998887 68888999887653 267999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
... ... ..... ...++|..+.+.| ||||.++..+.
T Consensus 112 ~~~--~~~----------~~~~~-------~~~~~l~~~~~~L----~pgG~li~~~~ 146 (252)
T 1wzn_A 112 FFS--TIM----------YFDEE-------DLRKLFSKVAEAL----KPGGVFITDFP 146 (252)
T ss_dssp CSS--GGG----------GSCHH-------HHHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred cCC--chh----------cCCHH-------HHHHHHHHHHHHc----CCCeEEEEecc
Confidence 321 111 11222 2356788888876 99999987653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=93.05 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=91.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..+++.. ..|+++|+++..++.++++ ..++.+...| .+ +..+.|
T Consensus 10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~--~~~~~~ 76 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KE--IPDNSV 76 (170)
T ss_dssp HHHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GG--SCTTCE
T ss_pred HHhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CC--CCCCce
Confidence 344567789999999999999999888865 3899999999999999887 4578888888 22 234789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc---------cH
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE---------NE 321 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E---------Ne 321 (384)
|.|++.... ..-+ . ...+++.+.+.| ||||+++.++......+ ..
T Consensus 77 D~v~~~~~l------~~~~------~----------~~~~l~~~~~~L----~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 130 (170)
T 3i9f_A 77 DFILFANSF------HDMD------D----------KQHVISEVKRIL----KDDGRVIIIDWRKENTGIGPPLSIRMDE 130 (170)
T ss_dssp EEEEEESCS------TTCS------C----------HHHHHHHHHHHE----EEEEEEEEEEECSSCCSSSSCGGGCCCH
T ss_pred EEEEEccch------hccc------C----------HHHHHHHHHHhc----CCCCEEEEEEcCccccccCchHhhhcCH
Confidence 999986431 1111 1 235778888876 99999999876544222 24
Q ss_pred HHHHHHHhcCCCEEeec
Q 016730 322 AVIDYALKKRDVKLVPC 338 (384)
Q Consensus 322 ~vv~~~l~~~~~~l~~~ 338 (384)
+.+..+++ +++++..
T Consensus 131 ~~~~~~l~--Gf~~~~~ 145 (170)
T 3i9f_A 131 KDYMGWFS--NFVVEKR 145 (170)
T ss_dssp HHHHHHTT--TEEEEEE
T ss_pred HHHHHHHh--CcEEEEc
Confidence 45555555 7777654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=102.46 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeC-CHHHHHHHHHHH-----HHcCCc-----eEEEEecCCCCcccc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM-KASRLKSLTANL-----HRMGVT-----NTIVCNYDGNELPKV 244 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~-~~~rl~~l~~n~-----~r~g~~-----~v~~~~~D~~~~~~~ 244 (384)
..+|.+|||+|||+|..+..++.. +.+.|+++|+ ++.+++.+++|+ +..|+. ++.+...|..+....
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 357889999999999999877764 2358999999 899999999999 666664 677775554432111
Q ss_pred c----CCCCCCEEEE-cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC---C--CcEEEEEecc
Q 016730 245 L----GLNTVDRVLL-DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK---S--GGYIVYSTCS 314 (384)
Q Consensus 245 ~----~~~~fD~Vll-DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk---p--GG~lvYsTCS 314 (384)
. ..+.||+|++ |+.. + ..+ ...++..+.++| + | ||+++.+.+.
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~--------~--------~~~-------~~~ll~~l~~~L----k~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLS--------F--------HQA-------HDALLRSVKMLL----ALPANDPTAVALVTFTH 207 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCS--------C--------GGG-------HHHHHHHHHHHB----CCTTTCTTCEEEEEECC
T ss_pred HHhhccCCCCCEEEEeCccc--------C--------hHH-------HHHHHHHHHHHh----cccCCCCCCEEEEEEEe
Confidence 1 2368999987 6542 1 111 234667777765 8 9 9987665443
Q ss_pred CCc---cccHHHHHHHHhcCC-CEEeec
Q 016730 315 IMV---TENEAVIDYALKKRD-VKLVPC 338 (384)
Q Consensus 315 i~~---~ENe~vv~~~l~~~~-~~l~~~ 338 (384)
..+ +..+..++ .+++.+ +++..+
T Consensus 208 ~~~~~~~~~~~~~~-~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 208 HRPHLAERDLAFFR-LVNADGALIAEPW 234 (281)
T ss_dssp --------CTHHHH-HHHHSTTEEEEEE
T ss_pred eecccchhHHHHHH-HHHhcCCEEEEEe
Confidence 322 22233333 556678 877654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-09 Score=96.96 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=95.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++. ...|+++|+++..++.++++. ...++.++.+|+..++. ..++||.|++
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~--~~~~fD~v~~ 122 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF--ENEQFEAIMA 122 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS--CTTCEEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC--CCCCccEEEE
Confidence 457889999999999999988886 358999999999999998774 34578899999988752 3478999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc-----------------
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT----------------- 318 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~----------------- 318 (384)
... +..-+ . ..++|..+.+.| ||||+++.++.+....
T Consensus 123 ~~~------l~~~~------~----------~~~~l~~~~~~L----~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (242)
T 3l8d_A 123 INS------LEWTE------E----------PLRALNEIKRVL----KSDGYACIAILGPTAKPRENSYPRLYGKDVVCN 176 (242)
T ss_dssp ESC------TTSSS------C----------HHHHHHHHHHHE----EEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSC
T ss_pred cCh------Hhhcc------C----------HHHHHHHHHHHh----CCCeEEEEEEcCCcchhhhhhhhhhcccccccc
Confidence 432 21111 1 135678888876 9999999988544322
Q ss_pred -ccHHHHHHHHhcCCCEEeec
Q 016730 319 -ENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 319 -ENe~vv~~~l~~~~~~l~~~ 338 (384)
-....+..++++.|++++..
T Consensus 177 ~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 177 TMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp CCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCHHHHHHHHHHcCCEEEEe
Confidence 12345677788888888765
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=97.28 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=82.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.+.++.+|||+|||+|..+..++.. +...|+++|+++.+++.+++|+. ++.++.+|+..++ +.||.|+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----~~~D~v~ 115 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----GKYDTWI 115 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----CCEEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----CCeeEEE
Confidence 4567899999999999999988876 33579999999999999999875 5778889987753 5799999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~ 332 (384)
+|||.... . . ...++++..+.+.+ |. +|+.|+. .....+...++..+
T Consensus 116 ~~~p~~~~-------------~-~------~~~~~~l~~~~~~~-------g~-~~~~~~~---~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 116 MNPPFGSV-------------V-K------HSDRAFIDKAFETS-------MW-IYSIGNA---KARDFLRREFSARG 162 (200)
T ss_dssp ECCCC---------------------------CHHHHHHHHHHE-------EE-EEEEEEG---GGHHHHHHHHHHHE
T ss_pred ECCCchhc-------------c-C------chhHHHHHHHHHhc-------Cc-EEEEEcC---chHHHHHHHHHHCC
Confidence 99994211 0 0 11235677777762 33 7777743 34455555555555
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=108.77 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=82.6
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHH-------HHHHHHcC--CceEEEEecCCCCcc
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSL-------TANLHRMG--VTNTIVCNYDGNELP 242 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l-------~~n~~r~g--~~~v~~~~~D~~~~~ 242 (384)
..+.+++|++|||+|||+|..+..++...+. ..|+|+|+++..++.+ +++++.+| +.++.++.+|....+
T Consensus 236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~ 314 (433)
T 1u2z_A 236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN 314 (433)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc
Confidence 4456789999999999999999999998753 5899999999998888 99999999 578999887665321
Q ss_pred ccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 243 KVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 243 ~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..+ ..+.||+|+++..+ . .| ++ .+.|..+.+. |||||+||.+
T Consensus 315 ~~~~~~~~~FDvIvvn~~l--~-----~~---------d~-------~~~L~el~r~----LKpGG~lVi~ 358 (433)
T 1u2z_A 315 NRVAELIPQCDVILVNNFL--F-----DE---------DL-------NKKVEKILQT----AKVGCKIISL 358 (433)
T ss_dssp HHHHHHGGGCSEEEECCTT--C-----CH---------HH-------HHHHHHHHTT----CCTTCEEEES
T ss_pred cccccccCCCCEEEEeCcc--c-----cc---------cH-------HHHHHHHHHh----CCCCeEEEEe
Confidence 000 12579999986432 0 01 11 2345666666 4999999876
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=108.79 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCCCcccccceEEEeCCcCc---chh---hhcCCCCCceEEEeccCCChHHHHHHHHcc---------------------
Q 016730 149 IGATPEYMAGFYMLQSASSF---LPV---MALAPQEKERVIDMAAAPGGKTTYIAALMK--------------------- 201 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~---l~~---~~L~~~~g~~VLD~cagpGgkt~~la~~~~--------------------- 201 (384)
....+.++.||-..+.++.. +++ .+....++..|||.|||+|+..+.++....
T Consensus 155 ~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~ 234 (703)
T 3v97_A 155 LSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDE 234 (703)
T ss_dssp SSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCH
T ss_pred cCCCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCH
Confidence 34456777776544544432 222 233567889999999999999887776531
Q ss_pred --------------------CCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 202 --------------------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 202 --------------------~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
....|+|+|+|+..++.++.|+.+.|+.+ +.+..+|+..+......+.||+|++|||.
T Consensus 235 ~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 235 AIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCc
Confidence 12579999999999999999999999986 89999999876433222379999999997
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.9e-10 Score=105.84 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc----CCceEEEEecCCCCcccccCCCCCCE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----GVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~----g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.++.+|||+|||+|+.+..+++.. +...|+++|+|+..++.+++++..+ .-.++.++.+|+..+......++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 467899999999999998888653 3468999999999999999987542 23568899999887643212478999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC-CccccHHHHHHHHhcC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI-MVTENEAVIDYALKKR 331 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi-~~~ENe~vv~~~l~~~ 331 (384)
|++|++... + |. .. -.+.+++..+.+.| ||||+++..+.+. ...+....+...+++.
T Consensus 173 Ii~d~~~~~-~-----~~-------~~-----l~~~~~l~~~~~~L----kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 230 (304)
T 3bwc_A 173 VIIDTTDPA-G-----PA-------SK-----LFGEAFYKDVLRIL----KPDGICCNQGESIWLDLELIEKMSRFIRET 230 (304)
T ss_dssp EEEECC---------------------------CCHHHHHHHHHHE----EEEEEEEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred EEECCCCcc-c-----cc-------hh-----hhHHHHHHHHHHhc----CCCcEEEEecCCcccchHHHHHHHHHHHhC
Confidence 999987310 0 10 00 01245777888875 9999999876543 2223333344445555
Q ss_pred CCEE
Q 016730 332 DVKL 335 (384)
Q Consensus 332 ~~~l 335 (384)
+|..
T Consensus 231 GF~~ 234 (304)
T 3bwc_A 231 GFAS 234 (304)
T ss_dssp TCSE
T ss_pred CCCc
Confidence 5543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=106.20 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=86.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..++.+|||+|||+|..+..+++. +..+|+|+|+| ..++.++++++..|+.+ +.++.+|+..++. +.++||+|+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~Ii 138 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL--PVEKVDIII 138 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC--SSSCEEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC--CCCceEEEE
Confidence 457899999999999999988886 34699999999 59999999999999876 8999999988742 347899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++.+..... + ... ...++..+.++| ||||+++.+.+++..
T Consensus 139 s~~~~~~l~----~--------~~~-------~~~~l~~~~r~L----kpgG~li~~~~~~~~ 178 (349)
T 3q7e_A 139 SEWMGYCLF----Y--------ESM-------LNTVLHARDKWL----APDGLIFPDRATLYV 178 (349)
T ss_dssp ECCCBBTBT----B--------TCC-------HHHHHHHHHHHE----EEEEEEESCEEEEEE
T ss_pred Ecccccccc----C--------chh-------HHHHHHHHHHhC----CCCCEEccccceEEE
Confidence 986421110 0 001 124566666775 999999877766543
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-10 Score=112.09 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=69.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--CCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+|.+|||+|||+|..+.+++.. .+.|+++|+|+.+++.+++|++.+ |+.++.++++|+..+........||.|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 5899999999999999888765 368999999999999999999999 99899999999987522211257999999
Q ss_pred cCCCCCC
Q 016730 256 DAPCSGT 262 (384)
Q Consensus 256 DaPCSg~ 262 (384)
|||..+.
T Consensus 170 DPPrr~~ 176 (410)
T 3ll7_A 170 DPARRSG 176 (410)
T ss_dssp CCEEC--
T ss_pred CCCCcCC
Confidence 9998764
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=98.77 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=81.6
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.+.++.+|||+|||+|..+..++.. ...|+++|+|+.+++.+++++ ..+..++.+..+|+..++ +..+.||.|+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~~~fD~v~ 109 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIP--LPDESVHGVI 109 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCC--SCTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCC--CCCCCeeEEE
Confidence 4567899999999999999988875 368999999999999999988 445567999999998765 3347899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+... + .+... ...+|..+.+.| ||||+++.+
T Consensus 110 ~~~~------l------~~~~~----------~~~~l~~~~~~L----~pgG~l~~~ 140 (263)
T 2yqz_A 110 VVHL------W------HLVPD----------WPKVLAEAIRVL----KPGGALLEG 140 (263)
T ss_dssp EESC------G------GGCTT----------HHHHHHHHHHHE----EEEEEEEEE
T ss_pred ECCc------h------hhcCC----------HHHHHHHHHHHC----CCCcEEEEE
Confidence 8532 1 11111 135678888876 999999876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=107.13 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=85.7
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+...++.+|||+|||+|..+..+++. +.++|+|+|+++ .++.++++++..|+ .++.++.+|+..++.. ++||
T Consensus 45 ~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~---~~~D 118 (348)
T 2y1w_A 45 NHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVD 118 (348)
T ss_dssp TGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEE
T ss_pred ccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC---Ccee
Confidence 344567899999999999999888875 346999999996 88999999999998 5799999999876421 5799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+|+++.+....+ + +. ..+.+..+.+.| ||||.++.+++++.
T Consensus 119 ~Ivs~~~~~~~~----~---------~~-------~~~~l~~~~~~L----kpgG~li~~~~~~~ 159 (348)
T 2y1w_A 119 IIISEPMGYMLF----N---------ER-------MLESYLHAKKYL----KPSGNMFPTIGDVH 159 (348)
T ss_dssp EEEECCCBTTBT----T---------TS-------HHHHHHHGGGGE----EEEEEEESCEEEEE
T ss_pred EEEEeCchhcCC----h---------HH-------HHHHHHHHHhhc----CCCeEEEEecCcEE
Confidence 999986622111 0 00 123455666664 99999998777754
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=99.49 Aligned_cols=112 Identities=21% Similarity=0.133 Sum_probs=87.0
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~f 250 (384)
..++..++.+|||+|||+|..+..+++..+ ...++++|+ +..++.+++++...|+. ++.+..+|+.+. .+ ..|
T Consensus 176 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~-~~~ 249 (374)
T 1qzz_A 176 DAYDWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---LP-VTA 249 (374)
T ss_dssp HTSCCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CS-CCE
T ss_pred HhCCCCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---CC-CCC
Confidence 344567789999999999999999999875 368999999 99999999999999986 799999998752 11 349
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|+|++... ...+...+ ..++|.++.+.| ||||+++.+..
T Consensus 250 D~v~~~~v-------------l~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~ 288 (374)
T 1qzz_A 250 DVVLLSFV-------------LLNWSDED-------ALTILRGCVRAL----EPGGRLLVLDR 288 (374)
T ss_dssp EEEEEESC-------------GGGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEC
T ss_pred CEEEEecc-------------ccCCCHHH-------HHHHHHHHHHhc----CCCcEEEEEec
Confidence 99998532 11223222 246788888886 99999998776
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-09 Score=96.93 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=89.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+++.+|||+|||+|..+..+++. ...|+++|+|+..++.++++ +.++..|+..+...+..++||+|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEE
Confidence 467899999999999999988886 25799999999999988876 5677788766422234478999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc---------------ccc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---------------TEN 320 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~---------------~EN 320 (384)
.- ++..- ...+ ...+|..+.++| ||||+++.++..... .-.
T Consensus 108 ~~------~l~~~-------~~~~-------~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (240)
T 3dli_A 108 SH------FVEHL-------DPER-------LFELLSLCYSKM----KYSSYIVIESPNPTSLYSLINFYIDPTHKKPVH 163 (240)
T ss_dssp ES------CGGGS-------CGGG-------HHHHHHHHHHHB----CTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCC
T ss_pred CC------chhhC-------CcHH-------HHHHHHHHHHHc----CCCcEEEEEeCCcchhHHHHHHhcCccccccCC
Confidence 42 22111 1111 145777788875 999999998765321 112
Q ss_pred HHHHHHHHhcCCCEEeec
Q 016730 321 EAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 321 e~vv~~~l~~~~~~l~~~ 338 (384)
.+.+..++++.|++++..
T Consensus 164 ~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 164 PETLKFILEYLGFRDVKI 181 (240)
T ss_dssp HHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 345566777778776654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=99.28 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=93.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--------------------------- 228 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~--------------------------- 228 (384)
..+|.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+.
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 35688999999999998887765421 4899999999999999988865431
Q ss_pred --ceE-EEEecCCCCcccc--cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC
Q 016730 229 --TNT-IVCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (384)
Q Consensus 229 --~~v-~~~~~D~~~~~~~--~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk 303 (384)
.++ .+...|+...... ...+.||+|++.-. + ..+.........+|.++.++| |
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~------l------------~~~~~~~~~~~~~l~~~~~~L----k 189 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC------L------------DAACPDLPAYRTALRNLGSLL----K 189 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC------H------------HHHCSSHHHHHHHHHHHHTTE----E
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhh------h------------hhhcCChHHHHHHHHHHHhhC----C
Confidence 126 7888998875421 11268999997321 1 100000123456788888876 9
Q ss_pred CCcEEEEEeccC------------CccccHHHHHHHHhcCCCEEeec
Q 016730 304 SGGYIVYSTCSI------------MVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 304 pGG~lvYsTCSi------------~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
|||+|+.++..- ...-+++.+..++++.|++++..
T Consensus 190 pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 190 PGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEE
Confidence 999999876321 01124556777778888887764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-10 Score=110.19 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=86.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--CC--ceEEEEecCCCCcccccCCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g~--~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..++.+|||+|||+|+.+..++...+ ..+|+++|+|+..++.+++++.++ |+ .++.++.+|+..+......++||
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 34568999999999999988887543 469999999999999999998875 44 46899999987653222236899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
+|++|++-. .+ +. .. -...+++..+.+.| +|||.|+..+.+...
T Consensus 197 lIi~d~~~p-~~-----~~-------~~-----l~~~~~l~~~~~~L----kpgG~lv~~~~~~~~ 240 (334)
T 1xj5_A 197 AVIVDSSDP-IG-----PA-------KE-----LFEKPFFQSVARAL----RPGGVVCTQAESLWL 240 (334)
T ss_dssp EEEECCCCT-TS-----GG-------GG-----GGSHHHHHHHHHHE----EEEEEEEEECCCTTT
T ss_pred EEEECCCCc-cC-----cc-------hh-----hhHHHHHHHHHHhc----CCCcEEEEecCCccc
Confidence 999998621 01 10 00 01246778888876 999999997655543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6e-09 Score=97.43 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=89.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH-----------------cCCceEEEEecCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR-----------------MGVTNTIVCNYDG 238 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r-----------------~g~~~v~~~~~D~ 238 (384)
+.++.+|||+|||+|..+..|++. ...|+|+|+|+.+++.++++... ....++.+.++|+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 457889999999999999998885 25899999999999998765431 0124689999999
Q ss_pred CCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 239 ~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
..++.. ..++||.|+.-.. .-.+ ... ....++..+.++| ||||+++++|......
T Consensus 143 ~~l~~~-~~~~FD~V~~~~~---l~~l----------~~~-------~~~~~l~~~~~~L----kpGG~l~l~~~~~~~~ 197 (252)
T 2gb4_A 143 FDLPRA-NIGKFDRIWDRGA---LVAI----------NPG-------DHDRYADIILSLL----RKEFQYLVAVLSYDPT 197 (252)
T ss_dssp TTGGGG-CCCCEEEEEESSS---TTTS----------CGG-------GHHHHHHHHHHTE----EEEEEEEEEEEECCTT
T ss_pred ccCCcc-cCCCEEEEEEhhh---hhhC----------CHH-------HHHHHHHHHHHHc----CCCeEEEEEEEecCCc
Confidence 987642 1268999996321 1111 111 1235677778875 9999998766543211
Q ss_pred --------ccHHHHHHHHhcCCCEEeec
Q 016730 319 --------ENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 319 --------ENe~vv~~~l~~~~~~l~~~ 338 (384)
-.++.+..++.. +++++..
T Consensus 198 ~~~g~~~~~~~~el~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 198 KHAGPPFYVPSAELKRLFGT-KCSMQCL 224 (252)
T ss_dssp SCCCSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHhhC-CeEEEEE
Confidence 123445555554 3665543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=97.48 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=82.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. ++.+..+|+..++. . +.||.|++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--~-~~fD~v~~~~ 109 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--N-RKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--S-CCEEEEEECT
T ss_pred CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc--c-CCceEEEEcC
Confidence 6789999999999999888776 25899999999999999999998887 78888899877652 2 6899999843
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
- ++ .+..++.+ ..++|..+.+.| ||||.++.++.
T Consensus 110 ~-----~l------~~~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~ 143 (246)
T 1y8c_A 110 D-----ST------NYIIDSDD-------LKKYFKAVSNHL----KEGGVFIFDIN 143 (246)
T ss_dssp T-----GG------GGCCSHHH-------HHHHHHHHHTTE----EEEEEEEEEEE
T ss_pred c-----cc------cccCCHHH-------HHHHHHHHHHhc----CCCcEEEEEec
Confidence 0 11 11112222 345778888876 99999998654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=98.03 Aligned_cols=111 Identities=21% Similarity=0.136 Sum_probs=86.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.++.+|||+|||+|..+..+++..++ .+++++|++ ..++.+++++...|+. ++.+..+|....+. . ..||+|++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~-~~~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPN-AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY--G-NDYDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC--C-SCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC--C-CCCcEEEE
Confidence 67889999999999999999998754 699999999 9999999999999986 49999999887532 2 35999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
--. ...++..+ ..++|.++.+.| ||||+++.......
T Consensus 239 ~~~-------------l~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 239 PNF-------------LHHFDVAT-------CEQLLRKIKTAL----AVEGKVIVFDFIPN 275 (335)
T ss_dssp ESC-------------GGGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEECCCC
T ss_pred cch-------------hccCCHHH-------HHHHHHHHHHhC----CCCcEEEEEeecCC
Confidence 321 12222222 356788888886 99999988776554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.4e-09 Score=99.52 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=83.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-------CCceEEEEecCCCCccc--cc--
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-------GVTNTIVCNYDGNELPK--VL-- 245 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-------g~~~v~~~~~D~~~~~~--~~-- 245 (384)
.++.+|||+|||+|..+..+++. ....|+++|+++.+++.++++.... +..++.++++|+...+. .+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 36789999999999999988873 3468999999999999999998776 44578999999987641 11
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhcc-CCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~-~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
..++||.|++.-. +.|. .+..+ ...+|..+.+.| ||||.++.+|..
T Consensus 111 ~~~~fD~V~~~~~------------l~~~~~~~~~-------~~~~l~~~~~~L----kpgG~li~~~~~ 157 (313)
T 3bgv_A 111 PQMCFDICSCQFV------------CHYSFESYEQ-------ADMMLRNACERL----SPGGYFIGTTPN 157 (313)
T ss_dssp TTCCEEEEEEETC------------GGGGGGSHHH-------HHHHHHHHHTTE----EEEEEEEEEEEC
T ss_pred CCCCEEEEEEecc------------hhhccCCHHH-------HHHHHHHHHHHh----CCCcEEEEecCC
Confidence 1258999998431 1222 12222 246778888876 999999998764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.4e-10 Score=100.40 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=91.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++.. ..|+++|+|+..++.++++... ++.+..+|+..+. ..++||.|++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~---~~~~fD~v~~~ 110 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQ---LPRRYDNIVLT 110 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCC---CSSCEEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcC---cCCcccEEEEh
Confidence 467899999999999998887753 4799999999999999887643 6888889987762 24789999974
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH-HchhccCCCCcEEEEEeccCCc------------------
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI-DMVDANSKSGGYIVYSTCSIMV------------------ 317 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~-~~L~~~lkpGG~lvYsTCSi~~------------------ 317 (384)
- ++.. ...+ .++|..+. ++| ||||+++.++.....
T Consensus 111 ~------~l~~------~~~~----------~~~l~~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (250)
T 2p7i_A 111 H------VLEH------IDDP----------VALLKRINDDWL----AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAV 164 (250)
T ss_dssp S------CGGG------CSSH----------HHHHHHHHHTTE----EEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCC
T ss_pred h------HHHh------hcCH----------HHHHHHHHHHhc----CCCCEEEEEcCChHHHHHHHHHHcCccccchhc
Confidence 2 2211 1111 35778888 875 999999998854321
Q ss_pred -----------cccHHHHHHHHhcCCCEEeec
Q 016730 318 -----------TENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 318 -----------~ENe~vv~~~l~~~~~~l~~~ 338 (384)
.-+.+.+..++++.|++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 165 TEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp CHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 114456667778888887664
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.6e-10 Score=99.56 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=80.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+.++|||+|||.|..++.++...+. .+++|+|+|+.+++.+++|+.++|+. ++.+ .|.... ...+.||+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~-a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~---~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEK-IIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD---VYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCC-CEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH---HTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc---CCCCCcChhhH
Confidence 34679999999999999888777665 49999999999999999999999998 6776 444322 23378999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCSi~ 316 (384)
- ++..+...++..+....+.| ||||.+| +=|-|+.
T Consensus 122 ~----------------------k~LHlL~~~~~al~~v~~~L----~pggvfISfptksl~ 157 (200)
T 3fzg_A 122 L----------------------KMLPVLKQQDVNILDFLQLF----HTQNFVISFPIKSLS 157 (200)
T ss_dssp E----------------------TCHHHHHHTTCCHHHHHHTC----EEEEEEEEEECCCCC
T ss_pred h----------------------hHHHhhhhhHHHHHHHHHHh----CCCCEEEEeChHHhc
Confidence 2 11222244555566777875 9999887 4455664
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=106.40 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=86.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+...+|.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+.+ +.++++|+..++.. ++||+
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 132 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---EKVDV 132 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---SCEEE
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---CcceE
Confidence 34567899999999999999988886 33589999999 99999999999999865 89999999876532 68999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|++++..... .+. . ....++..+.++| ||||.++.+.+++.
T Consensus 133 Iv~~~~~~~l----~~e--------~-------~~~~~l~~~~~~L----kpgG~li~~~~~~~ 173 (376)
T 3r0q_C 133 IISEWMGYFL----LRE--------S-------MFDSVISARDRWL----KPTGVMYPSHARMW 173 (376)
T ss_dssp EEECCCBTTB----TTT--------C-------THHHHHHHHHHHE----EEEEEEESSEEEEE
T ss_pred EEEcChhhcc----cch--------H-------HHHHHHHHHHhhC----CCCeEEEEecCeEE
Confidence 9997631111 000 0 0134566666765 99999998776644
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-08 Score=91.57 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++.. ..|+++|+|+.+++.+++++ .++.+..+|+..++. .+.||.|++-
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL---GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC---SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc---CCCCcEEEEc
Confidence 567899999999999999998874 37999999999999998764 457888899987653 3689999951
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
. +++ .+..++.+ ..++|..+.+.| ||||+++.+++..
T Consensus 108 ~-----~~~------~~~~~~~~-------~~~~l~~~~~~L----~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 108 F-----SSV------GYLKTTEE-------LGAAVASFAEHL----EPGGVVVVEPWWF 144 (239)
T ss_dssp T-----TGG------GGCCSHHH-------HHHHHHHHHHTE----EEEEEEEECCCCC
T ss_pred C-----chH------hhcCCHHH-------HHHHHHHHHHhc----CCCeEEEEEeccC
Confidence 1 111 11222222 356788888886 9999999987654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-09 Score=102.44 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+. ++.++.+|+.+++. +.++||.|
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~I 109 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL--PFPKVDII 109 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC--SSSCEEEE
T ss_pred hhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC--CCCcccEE
Confidence 3457889999999999999888875 33589999999 6899999999999985 48999999987652 23689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+++++..... + ... ...++..+.++| ||||.++.+++++
T Consensus 110 vs~~~~~~l~----~--------~~~-------~~~~l~~~~~~L----kpgG~li~~~~~~ 148 (328)
T 1g6q_1 110 ISEWMGYFLL----Y--------ESM-------MDTVLYARDHYL----VEGGLIFPDKCSI 148 (328)
T ss_dssp EECCCBTTBS----T--------TCC-------HHHHHHHHHHHE----EEEEEEESCEEEE
T ss_pred EEeCchhhcc----c--------HHH-------HHHHHHHHHhhc----CCCeEEEEeeceE
Confidence 9987632211 0 001 123566666665 9999998666654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.8e-10 Score=103.71 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=71.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH---HHcCCceEEEE--ecCCCCcccccCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL---HRMGVTNTIVC--NYDGNELPKVLGLNTV 250 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~---~r~g~~~v~~~--~~D~~~~~~~~~~~~f 250 (384)
+++|.+|||+|||||+.|..+++. +.|+|+|+++ ++..++++. +.+| .++.++ .+|+..++ .++|
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~----~~~f 141 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP----VERT 141 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC----CCCC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC----CCCC
Confidence 468999999999999999888876 6899999998 322111110 0111 167888 88998865 3689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc--EEEEEec
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG--YIVYSTC 313 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG--~lvYsTC 313 (384)
|.|++|.. ..+|. +. +... .+..+|..+.+.| |||| .++..+-
T Consensus 142 D~V~sd~~-~~~~~----~~---------~d~~--~~l~~L~~~~r~L----kpGG~~~fv~kv~ 186 (265)
T 2oxt_A 142 DVIMCDVG-ESSPK----WS---------VESE--RTIKILELLEKWK----VKNPSADFVVKVL 186 (265)
T ss_dssp SEEEECCC-CCCSC----HH---------HHHH--HHHHHHHHHHHHH----HHCTTCEEEEEES
T ss_pred cEEEEeCc-ccCCc----cc---------hhHH--HHHHHHHHHHHHh----ccCCCeEEEEEeC
Confidence 99999976 33331 11 1000 0112677777776 9999 8887553
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-09 Score=96.57 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=82.2
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+...++.+|||+|||+|..+..+++. +...|+++|+++.+++.++++... .++.+...|+..++ +..+.
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~~~~~ 107 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLH--LPQDS 107 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCC--CCTTC
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhcc--CCCCC
Confidence 344556668899999999999999988876 223899999999999999877543 36888889987765 23478
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
||.|++... +. +... ..++|..+.+.| ||||++++++
T Consensus 108 fD~v~~~~~------l~------~~~~----------~~~~l~~~~~~L----~pgG~l~~~~ 144 (243)
T 3bkw_A 108 FDLAYSSLA------LH------YVED----------VARLFRTVHQAL----SPGGHFVFST 144 (243)
T ss_dssp EEEEEEESC------GG------GCSC----------HHHHHHHHHHHE----EEEEEEEEEE
T ss_pred ceEEEEecc------cc------ccch----------HHHHHHHHHHhc----CcCcEEEEEe
Confidence 999998542 11 1111 235778888876 9999999986
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-10 Score=106.37 Aligned_cols=90 Identities=19% Similarity=0.079 Sum_probs=73.2
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCH-------HHHHHHHHHHHHcCCce-EEEEecCC
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA-------SRLKSLTANLHRMGVTN-TIVCNYDG 238 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~-------~rl~~l~~n~~r~g~~~-v~~~~~D~ 238 (384)
..+...++.+.+|.+|||+|||+|..|..++.. .+.|+++|+++ ..++.+++|++.+|+.+ +.++++|+
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~ 148 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA 148 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence 344555566677899999999999999999885 36899999999 99999999999988866 99999998
Q ss_pred CCcccccCC--CCCCEEEEcCCC
Q 016730 239 NELPKVLGL--NTVDRVLLDAPC 259 (384)
Q Consensus 239 ~~~~~~~~~--~~fD~VllDaPC 259 (384)
..+...+.. ..||+|++|||.
T Consensus 149 ~~~l~~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 149 AEQMPALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHhhhccCCCccEEEECCCC
Confidence 875322222 579999999984
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=103.81 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--CC--ceEEEEecCCCCcccccCCCCCCE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g~--~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.++.+|||+|||+|+.+..+++.. +..+|+++|+|+..++.+++++..+ ++ .++.++.+|+..+... ..++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~fD~ 171 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDV 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-CCCCceE
Confidence 456899999999999998888753 3468999999999999999998763 33 5689999998764221 2368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|++|+|... + |. . .....+++..+.+.| +|||.++..+.+..
T Consensus 172 Ii~d~~~~~-~-----~~-------~-----~l~~~~~l~~~~~~L----kpgG~lv~~~~~~~ 213 (304)
T 2o07_A 172 IITDSSDPM-G-----PA-------E-----SLFKESYYQLMKTAL----KEDGVLCCQGECQW 213 (304)
T ss_dssp EEEECC-----------------------------CHHHHHHHHHE----EEEEEEEEEEECTT
T ss_pred EEECCCCCC-C-----cc-------h-----hhhHHHHHHHHHhcc----CCCeEEEEecCCcc
Confidence 999987310 1 00 0 012346778888876 99999998875543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=8.7e-10 Score=104.67 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=71.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH---HHcCCceEEEE--ecCCCCcccccCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL---HRMGVTNTIVC--NYDGNELPKVLGLNTV 250 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~---~r~g~~~v~~~--~~D~~~~~~~~~~~~f 250 (384)
+++|.+|||+|||||+.|..+++. +.|+|+|+++ ++..++++. +.+| .++.++ .+|+..++ .++|
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~----~~~f 149 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKME----PFQA 149 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGCC----CCCC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhCC----CCCc
Confidence 468999999999999999988876 5799999998 322221110 0011 167888 88888765 3689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc--EEEEEecc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG--YIVYSTCS 314 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG--~lvYsTCS 314 (384)
|.|++|.. ..+|. +.. + .. .+.++|..+.+.| |||| .++..+.+
T Consensus 150 D~Vvsd~~-~~~~~----~~~------d---~~--~~l~~L~~~~r~L----kpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 150 DTVLCDIG-ESNPT----AAV------E---AS--RTLTVLNVISRWL----EYNQGCGFCVKVLN 195 (276)
T ss_dssp SEEEECCC-CCCSC----HHH------H---HH--HHHHHHHHHHHHH----HHSTTCEEEEEESC
T ss_pred CEEEECCC-cCCCc----hhh------h---HH--HHHHHHHHHHHHh----ccCCCcEEEEEeCC
Confidence 99999976 33331 111 0 00 0112677777776 9999 88875543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-09 Score=104.47 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=90.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--C--CceEEEEecCCCCcccccCCCCCCE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--G--VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g--~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.++.+|||+|||+|+.+..+++..+ ..+|+++|+|+..++.+++++..+ + -.++.++.+|+..+.... .++||+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fDv 192 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDV 192 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-CCCceE
Confidence 4568999999999999988886543 469999999999999999998763 2 246899999987643211 368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC--CccccHHHHHHHHhc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI--MVTENEAVIDYALKK 330 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi--~~~ENe~vv~~~l~~ 330 (384)
|++|++.. .| |.... .+.+++..+.+.| ||||.++..+.|. ..++...+++.+.+.
T Consensus 193 Ii~d~~~p-~~-----~~~~l------------~~~~~l~~~~~~L----kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 250 (321)
T 2pt6_A 193 IIVDSSDP-IG-----PAETL------------FNQNFYEKIYNAL----KPNGYCVAQCESLWIHVGTIKNMIGYAKKL 250 (321)
T ss_dssp EEEECCCS-SS-----GGGGG------------SSHHHHHHHHHHE----EEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred EEECCcCC-CC-----cchhh------------hHHHHHHHHHHhc----CCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence 99998521 11 11000 1246778888876 9999999876553 333334444444333
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-08 Score=93.82 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=86.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+..++.+|||+|||+|..+..+++..++ ..++++|+ +..++.+++++...|+ .++.+..+|.... .+ ..||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~p-~~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP---LP-AGAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CC-CSCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC---CC-CCCcEE
Confidence 4456789999999999999999998764 68999999 9999999999999987 4699999998632 22 279999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++-- +...+...+ ..++|+++.+.| ||||+|+.......
T Consensus 240 ~~~~-------------vlh~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 240 VLSA-------------VLHDWDDLS-------AVAILRRCAEAA----GSGGVVLVIEAVAG 278 (332)
T ss_dssp EEES-------------CGGGSCHHH-------HHHHHHHHHHHH----TTTCEEEEEECCCC
T ss_pred EEeh-------------hhccCCHHH-------HHHHHHHHHHhc----CCCCEEEEEeecCC
Confidence 9722 122233322 356889999987 99999998776543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=100.59 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=83.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--CC--ceEEEEecCCCCcccccCCCCCCEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g~--~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+.+|||+|||.|+.+..++... +..+|+++|+|+..++.+++++..+ ++ .++.++.+|+..+.... .++||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-ENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-CSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCeeEE
Confidence 46799999999999988877653 3469999999999999999998664 33 46899999998643221 3689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
++|+|.. .+. +. .+ . ..+++..+.+.| ||||.++..+.+.
T Consensus 153 i~d~~~~-~~~----~~-~l-~-----------~~~~~~~~~~~L----~pgG~lv~~~~~~ 192 (275)
T 1iy9_A 153 MVDSTEP-VGP----AV-NL-F-----------TKGFYAGIAKAL----KEDGIFVAQTDNP 192 (275)
T ss_dssp EESCSSC-CSC----CC-CC-S-----------TTHHHHHHHHHE----EEEEEEEEECCCT
T ss_pred EECCCCC-CCc----ch-hh-h-----------HHHHHHHHHHhc----CCCcEEEEEcCCc
Confidence 9999852 121 10 11 0 124667777775 9999999887653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-08 Score=95.72 Aligned_cols=113 Identities=9% Similarity=0.024 Sum_probs=86.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..+.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++++...|+ .++.+..+|+......++ +.||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTT-CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 45679999999999999999998754 68999999 9999999999998887 469999999887420122 57999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
--- ...+...+ ..++|+++.+.| ||||+|+.......
T Consensus 255 ~~v-------------lh~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 255 SQF-------------LDCFSEEE-------VISILTRVAQSI----GKDSKVYIMETLWD 291 (363)
T ss_dssp ESC-------------STTSCHHH-------HHHHHHHHHHHC----CTTCEEEEEECCTT
T ss_pred ech-------------hhhCCHHH-------HHHHHHHHHHhc----CCCcEEEEEeeccC
Confidence 321 12233332 246788888885 99999998776544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-09 Score=94.11 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=74.9
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc--cccCCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVD 251 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~--~~~~~~~fD 251 (384)
+...++.+|||+|||+|..+..+++. ...|+++|+++..++.++++ .++.+...|...+. ......+||
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 48 ILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred hhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCcc
Confidence 34456789999999999999888876 35899999999999999877 34455566665541 112235699
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.|++..... +++ ...+|..+.++| ||||+++.++.
T Consensus 119 ~v~~~~~l~-------~~~----------------~~~~l~~~~~~L----~pgG~l~~~~~ 153 (227)
T 3e8s_A 119 LICANFALL-------HQD----------------IIELLSAMRTLL----VPGGALVIQTL 153 (227)
T ss_dssp EEEEESCCC-------SSC----------------CHHHHHHHHHTE----EEEEEEEEEEC
T ss_pred EEEECchhh-------hhh----------------HHHHHHHHHHHh----CCCeEEEEEec
Confidence 999864421 111 124677888876 99999999875
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-09 Score=107.93 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=83.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+ .++.++.+|+.+++. + ++||+
T Consensus 154 l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~--~-~~fD~ 227 (480)
T 3b3j_A 154 HTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL--P-EQVDI 227 (480)
T ss_dssp GGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--S-SCEEE
T ss_pred hhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc--C-CCeEE
Confidence 34457889999999999999888773 346899999998 99999999999998 579999999987642 1 58999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|+++++ +. ..... ...+.+..+.++| ||||+++.+.+++
T Consensus 228 Ivs~~~----~~--------~~~~e--------~~~~~l~~~~~~L----kpgG~li~~~~~~ 266 (480)
T 3b3j_A 228 IISEPM----GY--------MLFNE--------RMLESYLHAKKYL----KPSGNMFPTIGDV 266 (480)
T ss_dssp EECCCC----HH--------HHTCH--------HHHHHHHHGGGGE----EEEEEEESCEEEE
T ss_pred EEEeCc----hH--------hcCcH--------HHHHHHHHHHHhc----CCCCEEEEEecee
Confidence 998765 10 00011 1233455666664 9999999665554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-08 Score=96.67 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=88.4
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~f 250 (384)
..++..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++++..|+.+ +.+..+|+...+ . ..+
T Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~ 257 (359)
T 1x19_A 184 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y--PEA 257 (359)
T ss_dssp HHCCCTTCCEEEEESCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC--C--CCC
T ss_pred HhcCCCCCCEEEEECCcccHHHHHHHHHCCC-CeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC--C--CCC
Confidence 3445677899999999999999999998753 68999999 999999999999999875 999999998763 2 335
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|+|++.-. ...+..+ ...++|+++.+.| ||||+++......
T Consensus 258 D~v~~~~v-------------lh~~~d~-------~~~~~l~~~~~~L----~pgG~l~i~e~~~ 298 (359)
T 1x19_A 258 DAVLFCRI-------------LYSANEQ-------LSTIMCKKAFDAM----RSGGRLLILDMVI 298 (359)
T ss_dssp SEEEEESC-------------GGGSCHH-------HHHHHHHHHHTTC----CTTCEEEEEEECC
T ss_pred CEEEEech-------------hccCCHH-------HHHHHHHHHHHhc----CCCCEEEEEeccc
Confidence 99998322 1223322 2356788888885 9999998777554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.7e-09 Score=95.38 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---CCCCCCE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~~~~fD~ 252 (384)
+.++.+|||+|||+|..+..++.... .|+++|+|+..++.+++++ ...++.++++|+..++... ....||+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~ 127 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDAN 127 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccE
Confidence 56789999999999999999998753 7999999999999999876 3457899999998864321 0124999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|++.....- ....+ ..++|..+.+.| ||||+++.+..+.
T Consensus 128 v~~~~~~~~-------------~~~~~-------~~~~l~~~~~~L----kpgG~l~i~~~~~ 166 (245)
T 3ggd_A 128 IYMRTGFHH-------------IPVEK-------RELLGQSLRILL----GKQGAMYLIELGT 166 (245)
T ss_dssp EEEESSSTT-------------SCGGG-------HHHHHHHHHHHH----TTTCEEEEEEECT
T ss_pred EEEcchhhc-------------CCHHH-------HHHHHHHHHHHc----CCCCEEEEEeCCc
Confidence 998654211 11111 245778888886 9999998887654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-09 Score=100.72 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=86.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccCCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..++.+|||+|||+|+.+..++... +..+|+++|+|+..++.+++++..++ -.++.++.+|+....... .++||
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD 153 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYD 153 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-CCCce
Confidence 3456899999999999998887653 34699999999999999999987653 357889999987653222 36899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+|++|++.. .| |... . ...+++..+.+.| +|||.++..++|..
T Consensus 154 ~Ii~d~~~~-~~-----~~~~-l-----------~~~~~l~~~~~~L----~pgG~lv~~~~~~~ 196 (283)
T 2i7c_A 154 VIIVDSSDP-IG-----PAET-L-----------FNQNFYEKIYNAL----KPNGYCVAQCESLW 196 (283)
T ss_dssp EEEEECCCT-TT-----GGGG-G-----------SSHHHHHHHHHHE----EEEEEEEEECCCTT
T ss_pred EEEEcCCCC-CC-----cchh-h-----------hHHHHHHHHHHhc----CCCcEEEEECCCcc
Confidence 999998632 11 1100 0 1145777777875 99999999887643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-08 Score=96.48 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=86.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.++..++.+|||+|||+|..+..+++..++ ..++++|+ +..++.+++++...|+. ++.+..+|+.+. .+ ..||
T Consensus 178 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~-~~~D 251 (360)
T 1tw3_A 178 AYDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LP-RKAD 251 (360)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CS-SCEE
T ss_pred hCCCccCcEEEEeCCcCcHHHHHHHHhCCC-CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---CC-CCcc
Confidence 345677899999999999999999988754 68999999 99999999999999986 799999998752 11 3499
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.|++... ...+...+ ..++|+++.+.| ||||+++.+...
T Consensus 252 ~v~~~~v-------------l~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~ 290 (360)
T 1tw3_A 252 AIILSFV-------------LLNWPDHD-------AVRILTRCAEAL----EPGGRILIHERD 290 (360)
T ss_dssp EEEEESC-------------GGGSCHHH-------HHHHHHHHHHTE----EEEEEEEEEECC
T ss_pred EEEEccc-------------ccCCCHHH-------HHHHHHHHHHhc----CCCcEEEEEEEe
Confidence 9998432 11222222 246788888886 999999988765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-09 Score=104.17 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=83.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--CC--ceEEEEecCCCCcccccCCCCCCE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g~--~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.++.+|||+|||+|+.+..++...+ .++|+++|+|+..++.+++++..+ |+ .++.++.+|+...... ..++||+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~ 184 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV 184 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCCceE
Confidence 3567999999999999998887543 479999999999999999998765 33 4689999998764322 2368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|++|++.. .| |. .. -...+++..+.+.| +|||.++..+.+..
T Consensus 185 Ii~d~~~~-~~-----~~-------~~-----l~t~~~l~~~~~~L----kpgG~lv~~~~~~~ 226 (314)
T 2b2c_A 185 IITDSSDP-VG-----PA-------ES-----LFGQSYYELLRDAL----KEDGILSSQGESVW 226 (314)
T ss_dssp EEECCC-------------------------------HHHHHHHHE----EEEEEEEEECCCTT
T ss_pred EEEcCCCC-CC-----cc-------hh-----hhHHHHHHHHHhhc----CCCeEEEEECCCcc
Confidence 99998621 00 10 00 01256788888876 99999998876654
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-08 Score=107.60 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=87.2
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc------CCceEEEEecCCCCccccc
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM------GVTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~------g~~~v~~~~~D~~~~~~~~ 245 (384)
..+...++.+|||+|||+|..+..+++..+....|+|+|+++.+++.++++++.. |+.++.+..+|+..++..
T Consensus 715 elL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~- 793 (950)
T 3htx_A 715 KHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR- 793 (950)
T ss_dssp HHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT-
T ss_pred HHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc-
Confidence 3345568999999999999999888876533468999999999999999987643 677899999999987643
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.+.||+|++.. ++.. .... ....++..+.+.| ||| .++.+|+.
T Consensus 794 -d~sFDlVV~~e------VLeH-------L~dp-------~l~~~L~eI~RvL----KPG-~LIISTPN 836 (950)
T 3htx_A 794 -LHDVDIGTCLE------VIEH-------MEED-------QACEFGEKVLSLF----HPK-LLIVSTPN 836 (950)
T ss_dssp -SCSCCEEEEES------CGGG-------SCHH-------HHHHHHHHHHHTT----CCS-EEEEEECB
T ss_pred -cCCeeEEEEeC------chhh-------CChH-------HHHHHHHHHHHHc----CCC-EEEEEecC
Confidence 47899999832 2221 1111 1234677888875 999 88888764
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-09 Score=97.99 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=86.2
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC----ceEEEEecCCCCccc-cc
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----TNTIVCNYDGNELPK-VL 245 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~----~~v~~~~~D~~~~~~-~~ 245 (384)
...+...++.+|||+|||+|..+..++.. ...|+|+|+|+.+++.+++++...+. .++.+..+|+..++. ++
T Consensus 50 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 126 (293)
T 3thr_A 50 LGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP 126 (293)
T ss_dssp HHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred HHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc
Confidence 34455567899999999999999988876 24899999999999999998865443 357777888877641 12
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
..++||.|++... ++..-++... +.+ ...++|..+.+.| ||||+++.++++
T Consensus 127 ~~~~fD~V~~~g~-----~l~~~~~~~~--~~~-------~~~~~l~~~~~~L----kpgG~l~~~~~~ 177 (293)
T 3thr_A 127 AGDGFDAVICLGN-----SFAHLPDSKG--DQS-------EHRLALKNIASMV----RPGGLLVIDHRN 177 (293)
T ss_dssp CTTCEEEEEECTT-----CGGGSCCSSS--SSH-------HHHHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred cCCCeEEEEEcCh-----HHhhcCcccc--CHH-------HHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 3478999997311 1111111000 011 2356788888886 999999998775
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.5e-08 Score=93.87 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=88.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
++..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++++...|+ .++.+..+|.... .+ ..||+
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~p-~~~D~ 271 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPG-LRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET---IP-DGADV 271 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC---CC-SSCSE
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCC-CeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC---CC-CCceE
Confidence 45567889999999999999999998754 68999999 9999999999999987 4699999998732 22 27999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
|++--. ...+...+ ..++|+++.+.| ||||+|+........
T Consensus 272 v~~~~v-------------lh~~~d~~-------~~~~L~~~~~~L----~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 272 YLIKHV-------------LHDWDDDD-------VVRILRRIATAM----KPDSRLLVIDNLIDE 312 (369)
T ss_dssp EEEESC-------------GGGSCHHH-------HHHHHHHHHTTC----CTTCEEEEEEEBCCS
T ss_pred EEhhhh-------------hccCCHHH-------HHHHHHHHHHHc----CCCCEEEEEEeccCC
Confidence 998321 12233322 246888888885 999999988766544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=95.90 Aligned_cols=137 Identities=14% Similarity=0.086 Sum_probs=85.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-----------------CC------------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-----------------GV------------ 228 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-----------------g~------------ 228 (384)
++.+|||+|||+|. +..++.... ...|+|+|+|+.+++.++++++.. |.
T Consensus 71 ~~~~vLDiGcG~G~-~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTV-YQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCC-GGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcCh-HHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 68899999999999 333333322 358999999999999998865421 10
Q ss_pred -ceEEEEecCCCC-ccc---ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC
Q 016730 229 -TNTIVCNYDGNE-LPK---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (384)
Q Consensus 229 -~~v~~~~~D~~~-~~~---~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk 303 (384)
..+.++.+|+.. .+. .+..++||+|++..- + .+... -.....++|..+.++| |
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~------l------~~~~~------~~~~~~~~l~~~~r~L----k 206 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC------L------EAVSP------DLASFQRALDHITTLL----R 206 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC------H------HHHCS------SHHHHHHHHHHHHTTE----E
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhh------h------hhhcC------CHHHHHHHHHHHHHhc----C
Confidence 014566778876 331 122356999997421 0 00000 0122356788888876 9
Q ss_pred CCcEEEEEeccCC------------ccccHHHHHHHHhcCCCEEeec
Q 016730 304 SGGYIVYSTCSIM------------VTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 304 pGG~lvYsTCSi~------------~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
|||+|+.+...-. .--+++.+..++++.|++++..
T Consensus 207 pGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 207 PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp EEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 9999998742110 0114556667777778777654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-09 Score=100.45 Aligned_cols=133 Identities=9% Similarity=0.040 Sum_probs=93.3
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|||+|||.|+.+..+++..++ .+|+++|+|+..++.+++++...+-.++.++.+|+..+......++||+|++|++..
T Consensus 92 rVLdIG~G~G~la~~la~~~p~-~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQ-SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTT-CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred EEEEEECCcCHHHHHHHHHCCC-cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 9999999999999999987654 589999999999999999876544457899999998764333346899999997632
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc-cHHHHHHHHhcCC-CEEe
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE-NEAVIDYALKKRD-VKLV 336 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E-Ne~vv~~~l~~~~-~~l~ 336 (384)
.+. |.. .. ..+++..+.+.| +|||.++..+.+-...+ ...+++.+.+.++ +.++
T Consensus 171 -~~~----~~~--L~-----------t~efl~~~~r~L----kpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~ 226 (317)
T 3gjy_A 171 -AIT----PQN--FT-----------TVEFFEHCHRGL----APGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVI 226 (317)
T ss_dssp -SCC----CGG--GS-----------BHHHHHHHHHHE----EEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEE
T ss_pred -ccc----chh--hh-----------HHHHHHHHHHhc----CCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEE
Confidence 111 111 11 135677777775 99999998876643321 2344555555553 4443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=101.46 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=84.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--C---CceEEEEecCCCCcccccCCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--G---VTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g---~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.++.+|||+|||+|+.+..+++..+ ..+|+++|+|+..++.+++++..+ | -.++.++.+|+..+... ..++||
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD 153 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYD 153 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-cCCCcc
Confidence 3567999999999999988887543 468999999999999999998762 2 35789999999874221 236899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+|++|++... + . ..|... . ...+++..+.+.| ||||.++..+.+.
T Consensus 154 ~Ii~d~~~~~-~-~-~~~~~~-l-----------~~~~~l~~~~~~L----kpgG~lv~~~~~~ 198 (314)
T 1uir_A 154 VVIIDLTDPV-G-E-DNPARL-L-----------YTVEFYRLVKAHL----NPGGVMGMQTGMI 198 (314)
T ss_dssp EEEEECCCCB-S-T-TCGGGG-G-----------SSHHHHHHHHHTE----EEEEEEEEEEEEE
T ss_pred EEEECCCCcc-c-c-cCcchh-c-----------cHHHHHHHHHHhc----CCCcEEEEEccCc
Confidence 9999987421 0 0 011000 0 1245777788876 9999999876553
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-08 Score=94.64 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=89.2
Q ss_pred cCCCC-CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCC
Q 016730 174 LAPQE-KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 174 L~~~~-g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD 251 (384)
++..+ +.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++++...++. ++.+..+|....+... .+.||
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~D 250 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE-GGAAD 250 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-TCCEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-CCCcc
Confidence 34455 789999999999999999988764 78999999 88999999999999985 4999999988764212 25699
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+|++-- + ...+...+ ..++|+++.+.| ||||+|+.....+.
T Consensus 251 ~v~~~~------v-------lh~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 251 VVMLND------C-------LHYFDARE-------AREVIGHAAGLV----KPGGALLILTMTMN 291 (352)
T ss_dssp EEEEES------C-------GGGSCHHH-------HHHHHHHHHHTE----EEEEEEEEEEECCC
T ss_pred EEEEec------c-------cccCCHHH-------HHHHHHHHHHHc----CCCCEEEEEEeccC
Confidence 999832 1 12233332 356888888886 99999998776543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.2e-09 Score=96.20 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=79.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..+++ ....|+++|+|+.+++.++++. ++.+...|+..++ +..++|
T Consensus 27 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~--~~~~~f 95 (261)
T 3ege_A 27 INLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLA--LPDKSV 95 (261)
T ss_dssp HHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCC--SCTTCB
T ss_pred HHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCC--CCCCCE
Confidence 4445667899999999999999998886 3479999999998887766543 7889999998765 334789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|.|++... + .+... ..++|..+.+.| | ||+++..++.
T Consensus 96 D~v~~~~~------l------~~~~~----------~~~~l~~~~~~L----k-gG~~~~~~~~ 132 (261)
T 3ege_A 96 DGVISILA------I------HHFSH----------LEKSFQEMQRII----R-DGTIVLLTFD 132 (261)
T ss_dssp SEEEEESC------G------GGCSS----------HHHHHHHHHHHB----C-SSCEEEEEEC
T ss_pred eEEEEcch------H------hhccC----------HHHHHHHHHHHh----C-CcEEEEEEcC
Confidence 99998532 1 11111 235778888886 9 9998888775
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.5e-09 Score=98.07 Aligned_cols=102 Identities=10% Similarity=0.115 Sum_probs=76.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||+|||+|..+..+++.. ..|+|+|+|+.+++.+++ ..++.+..+|+..++ +.+++||.|++--
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~--~~~~sfD~v~~~~ 107 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTG--LPPASVDVAIAAQ 107 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCC--CCSSCEEEEEECS
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhc--ccCCcccEEEEee
Confidence 45799999999999998888753 589999999999877653 257899999998876 3458999999721
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++ .|. .. .+.+.++.++| ||||+|++.+.+...
T Consensus 108 ------~~------h~~-~~----------~~~~~e~~rvL----kpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 108 ------AM------HWF-DL----------DRFWAELRRVA----RPGAVFAAVTYGLTR 140 (257)
T ss_dssp ------CC------TTC-CH----------HHHHHHHHHHE----EEEEEEEEEEECCCB
T ss_pred ------eh------hHh-hH----------HHHHHHHHHHc----CCCCEEEEEECCCCC
Confidence 11 121 11 13567777775 999999988877654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-10 Score=114.10 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=109.2
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccC--------------CceEEEEeCCHHHHHHHHHH
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN--------------TGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~--------------~g~V~a~D~~~~rl~~l~~n 222 (384)
.|.|+--..-+.+.+.++.+++| +|||.|||+|+..+.++..+.. ...++|+|+++..+..++.|
T Consensus 224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 35554444555667778888877 9999999999988777655421 35799999999999999999
Q ss_pred HHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC----CCCchhhcc--------CCHHHHHHHHHHHHH
Q 016730 223 LHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI----SKDESVKTS--------KSLEDIQKCSYLQKQ 289 (384)
Q Consensus 223 ~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~----~r~p~~~~~--------~~~~~i~~l~~~Q~~ 289 (384)
+...|+.. +.+.++|....+. ....+||+|+.+||.+..... ..++...+. ..+. ...+..
T Consensus 303 l~l~gi~~~i~i~~gDtL~~~~-~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~-----~~~~~~ 376 (544)
T 3khk_A 303 MVIRGIDFNFGKKNADSFLDDQ-HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPT-----GNANFA 376 (544)
T ss_dssp HHHTTCCCBCCSSSCCTTTSCS-CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCT-----TCTHHH
T ss_pred HHHhCCCcccceeccchhcCcc-cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCC-----cchhHH
Confidence 99999863 3336788765443 223689999999999764321 111111111 0011 011234
Q ss_pred HHHHHHHchhccCCCCcEEEEEecc-C-Ccc-ccHHHHH-HHHhcCCC
Q 016730 290 LILAAIDMVDANSKSGGYIVYSTCS-I-MVT-ENEAVID-YALKKRDV 333 (384)
Q Consensus 290 iL~~a~~~L~~~lkpGG~lvYsTCS-i-~~~-ENe~vv~-~~l~~~~~ 333 (384)
++.++++.| ||||++++.+-. + +.. -.+..+. +++++..+
T Consensus 377 Fl~~~l~~L----k~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l 420 (544)
T 3khk_A 377 WMLHMLYHL----APTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLV 420 (544)
T ss_dssp HHHHHHHTE----EEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHHHh----ccCceEEEEecchhhhcCcchHHHHHHHHHhCCcH
Confidence 788889986 999998887642 2 222 2455665 66666554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.2e-09 Score=98.85 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=71.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
..+..+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..++.+++++. +..++.++++|+..++.. ..
T Consensus 41 ~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~--~~ 113 (295)
T 3gru_A 41 KAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLN--KL 113 (295)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGG--GS
T ss_pred HHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcc--cC
Confidence 3556677889999999999999999999987 3689999999999999999987 456899999999986532 25
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.||+|+.++|.
T Consensus 114 ~fD~Iv~NlPy 124 (295)
T 3gru_A 114 DFNKVVANLPY 124 (295)
T ss_dssp CCSEEEEECCG
T ss_pred CccEEEEeCcc
Confidence 79999999994
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-09 Score=95.54 Aligned_cols=102 Identities=12% Similarity=0.144 Sum_probs=76.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..+++. ...|+++|+|+.+++.++++.. .+ +...|+..++ +..+.||.|++..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~--~~~~~fD~v~~~~ 122 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLP--FPSGAFEAVLALG 122 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCC--SCTTCEEEEEECS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCC--CCCCCEEEEEEcc
Confidence 7889999999999999888775 3589999999999999988754 22 6678888765 2347899999743
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.. ..+.. ...++|..+.+.| ||||+++.++.+.
T Consensus 123 ~~-----------~~~~~----------~~~~~l~~~~~~L----kpgG~l~~~~~~~ 155 (260)
T 2avn_A 123 DV-----------LSYVE----------NKDKAFSEIRRVL----VPDGLLIATVDNF 155 (260)
T ss_dssp SH-----------HHHCS----------CHHHHHHHHHHHE----EEEEEEEEEEEBH
T ss_pred hh-----------hhccc----------cHHHHHHHHHHHc----CCCeEEEEEeCCh
Confidence 20 00101 1345778888876 9999999988654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=95.99 Aligned_cols=113 Identities=10% Similarity=0.082 Sum_probs=75.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHcc---CCceE--EEEeCCHHHHHHHHHHHHHc-CCceEEEE--ecCCCCccc----
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMK---NTGLI--YANEMKASRLKSLTANLHRM-GVTNTIVC--NYDGNELPK---- 243 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~---~~g~V--~a~D~~~~rl~~l~~n~~r~-g~~~v~~~--~~D~~~~~~---- 243 (384)
+.++.+|||+|||+|..|..++..+. ....| +++|.|+.+++.+++++... ++.++.+. ..|+..++.
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 45788999999999988776554331 23444 99999999999999998764 66666543 444433321
Q ss_pred ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 244 ~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.+..++||+|++-.- +.|...+ .+.|..+.++| ||||+++.++.+
T Consensus 130 ~~~~~~fD~V~~~~~------------l~~~~d~----------~~~l~~~~r~L----kpgG~l~i~~~~ 174 (292)
T 2aot_A 130 KKELQKWDFIHMIQM------------LYYVKDI----------PATLKFFHSLL----GTNAKMLIIVVS 174 (292)
T ss_dssp TTCCCCEEEEEEESC------------GGGCSCH----------HHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred ccCCCceeEEEEeee------------eeecCCH----------HHHHHHHHHHc----CCCcEEEEEEec
Confidence 023478999997321 1222222 34677788875 999999987644
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-09 Score=98.53 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=71.5
Q ss_pred CcchhhhcCCCCC--ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--------C-ceEEEEe
Q 016730 167 SFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--------V-TNTIVCN 235 (384)
Q Consensus 167 s~l~~~~L~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--------~-~~v~~~~ 235 (384)
......++.+++| .+|||+|||.|..++.++.. .+.|+++|+++..+..+++++++.+ + .++.+++
T Consensus 75 ~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 3455666777777 99999999999999999987 2579999999999888888887653 4 5689999
Q ss_pred cCCCCcccccCCCCCCEEEEcCCC
Q 016730 236 YDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+|+..+...+. ..||+|++|||.
T Consensus 152 ~D~~~~L~~~~-~~fDvV~lDP~y 174 (258)
T 2oyr_A 152 ASSLTALTDIT-PRPQVVYLDPMF 174 (258)
T ss_dssp SCHHHHSTTCS-SCCSEEEECCCC
T ss_pred CCHHHHHHhCc-ccCCEEEEcCCC
Confidence 99887533232 369999999995
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-08 Score=88.93 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++. + ..|+++|+++..++.++++.. .+...|+......+..++||.|++.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCCCCCCCccCEEEEC
Confidence 67889999999999999988876 3 789999999999988876542 4667888764333344789999985
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.. +.. ...+ .++|..+.+.| ||||+++.++..
T Consensus 101 ~~------l~~------~~~~----------~~~l~~~~~~L----~~gG~l~~~~~~ 132 (230)
T 3cc8_A 101 DV------LEH------LFDP----------WAVIEKVKPYI----KQNGVILASIPN 132 (230)
T ss_dssp SC------GGG------SSCH----------HHHHHHTGGGE----EEEEEEEEEEEC
T ss_pred Ch------hhh------cCCH----------HHHHHHHHHHc----CCCCEEEEEeCC
Confidence 32 111 1111 25677777775 999999998744
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=90.23 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..+ +...|+++|+++.+++.+++++ .++.+...|+..++ +..++||.|++..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~--~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALP--FPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCC--SCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCC--CCCCcEEEEEEcC
Confidence 7889999999999987765 2238999999999999998876 46778889988765 2346899999853
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
. +..-+ . ..++|..+.++| ||||+++.++..-
T Consensus 104 ~------l~~~~------~----------~~~~l~~~~~~L----~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 104 T------LEFVE------D----------VERVLLEARRVL----RPGGALVVGVLEA 135 (211)
T ss_dssp C------TTTCS------C----------HHHHHHHHHHHE----EEEEEEEEEEECT
T ss_pred h------hhhcC------C----------HHHHHHHHHHHc----CCCCEEEEEecCC
Confidence 2 11111 1 135778888876 9999999987543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=103.75 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=111.0
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccC------------CceEEEEeCCHHHHHHHHHHHH
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN------------TGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~------------~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
.|.|+-=..-+.+.+.++.|++|++|+|-|||+||.-+.+...+.. ...++++|+++.....++-|+-
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~ 275 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL 275 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence 4655444444567788899999999999999999988776665432 2469999999999999999998
Q ss_pred HcCCceEEEEecCCCCcccc--cCCCCCCEEEEcCCCCCCCc---CCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchh
Q 016730 225 RMGVTNTIVCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGV---ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (384)
Q Consensus 225 r~g~~~v~~~~~D~~~~~~~--~~~~~fD~VllDaPCSg~G~---~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~ 299 (384)
-.|+....+..+|....+.. ....+||+|+.+||.++..- ..+.|... ..+ ..+.-.+.+++..|.
T Consensus 276 lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~-~~~--------~~~~~Fl~~~l~~Lk 346 (530)
T 3ufb_A 276 LHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDM-QTA--------ETAMLFLQLIMRKLK 346 (530)
T ss_dssp HHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGG-CCC--------BHHHHHHHHHHHHBC
T ss_pred hcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhc-ccc--------hhHHHHHHHHHHHhh
Confidence 88987666777887654321 12257999999999975421 11111110 011 123345667776651
Q ss_pred ---ccCCCCcEEEEEecc--CCccccHHHHH-HHHhcCCCE
Q 016730 300 ---ANSKSGGYIVYSTCS--IMVTENEAVID-YALKKRDVK 334 (384)
Q Consensus 300 ---~~lkpGG~lvYsTCS--i~~~ENe~vv~-~~l~~~~~~ 334 (384)
..+++||++++.+-. ++..-.+.-|. +++++..++
T Consensus 347 ~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~~l~ 387 (530)
T 3ufb_A 347 RPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNFNLH 387 (530)
T ss_dssp CTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHSEEE
T ss_pred hhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcCEEE
Confidence 112479999887652 33333344565 777776543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-08 Score=93.06 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=85.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+..+ .+|||+|||+|..+..+++..++ .+++++|+ +..++.+++++...|+ .++.+..+|... + .+ ..||+|
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~~-~~~D~v 237 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E--VP-SNGDIY 237 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C--CC-SSCSEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C--CC-CCCCEE
Confidence 4445 89999999999999999988754 68999999 9999999999988876 468999999876 2 22 579999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
++.-. ...+...+ ..++|+++.+.| ||||+++......
T Consensus 238 ~~~~v-------------l~~~~~~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 238 LLSRI-------------IGDLDEAA-------SLRLLGNCREAM----AGDGRVVVIERTI 275 (334)
T ss_dssp EEESC-------------GGGCCHHH-------HHHHHHHHHHHS----CTTCEEEEEECCB
T ss_pred EEchh-------------ccCCCHHH-------HHHHHHHHHHhc----CCCCEEEEEEecc
Confidence 97422 22233332 256888888885 9999999887554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-10 Score=107.49 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=75.7
Q ss_pred EEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 160 ~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
|..+..-....+..+++.++++|||+|||+|..|..+++.. +.|+|+|+|+..++.+++++. +..++.++++|+.
T Consensus 11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~ 85 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDIL 85 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCT
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChh
Confidence 44455444556667778899999999999999999999873 689999999999998888775 4568999999998
Q ss_pred CcccccCCCCCCEEEEcCCCCCC
Q 016730 240 ELPKVLGLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 240 ~~~~~~~~~~fD~VllDaPCSg~ 262 (384)
.++.. ..+.| .|++|+|+..+
T Consensus 86 ~~~~~-~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 86 QFQFP-NKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp TTTCC-CSSEE-EEEEECCSSSC
T ss_pred hcCcc-cCCCc-EEEEeCCcccc
Confidence 87521 12568 89999997544
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=95.62 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=76.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++.++ ...|+++|+++.+++.++++. .++.+...|+..++. ..++||.|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--SDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--CTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--CCCceeEEEEe
Confidence 5788999999999999999998764 368999999999999988764 356778889887652 34689999973
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.. + ..+..+.++| ||||+++.++...
T Consensus 156 ~~----------~-------------------~~l~~~~~~L----~pgG~l~~~~~~~ 181 (269)
T 1p91_A 156 YA----------P-------------------CKAEELARVV----KPGGWVITATPGP 181 (269)
T ss_dssp SC----------C-------------------CCHHHHHHHE----EEEEEEEEEEECT
T ss_pred CC----------h-------------------hhHHHHHHhc----CCCcEEEEEEcCH
Confidence 21 0 1246666765 9999999987543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=100.59 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=82.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
-+|.+|||+|||+|..++.+|+. +..+|+|+|.|+ .++.++++++.+|+.+ |.++++|..++... ++||+|++
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp---e~~Dvivs 155 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP---EQVDAIVS 155 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEEC
T ss_pred cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC---ccccEEEe
Confidence 36899999999999988766654 345899999996 7899999999999965 89999999887532 68999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC--ccccH
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM--VTENE 321 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~--~~ENe 321 (384)
+.- +.+.+.. ..+ ..++...-++ |||||.++-+.|+++ +-|.+
T Consensus 156 E~~--~~~l~~e----------~~l-------~~~l~a~~r~----Lkp~G~~iP~~atly~apie~~ 200 (376)
T 4hc4_A 156 EWM--GYGLLHE----------SML-------SSVLHARTKW----LKEGGLLLPASAELFIVPISDQ 200 (376)
T ss_dssp CCC--BTTBTTT----------CSH-------HHHHHHHHHH----EEEEEEEESCEEEEEEEEECCH
T ss_pred ecc--ccccccc----------chh-------hhHHHHHHhh----CCCCceECCccceEEEEEeccc
Confidence 642 2222111 111 1233333344 599999997777755 34543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=96.20 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=77.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc----CCceEEEEecCCCCcccccCCCCCCEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~----g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+.+|||+|||.|+.+..++.. + .+|+++|+|+..++.+++++..+ .-.++.++.+|+..+. ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----hhCCEE
Confidence 4579999999999998888776 3 79999999999999998876432 2246888899988754 579999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++|++ +|. .++..+.+.| ||||.++..+++..
T Consensus 144 i~d~~---------dp~------------------~~~~~~~~~L----~pgG~lv~~~~~~~ 175 (262)
T 2cmg_A 144 FCLQE---------PDI------------------HRIDGLKRML----KEDGVFISVAKHPL 175 (262)
T ss_dssp EESSC---------CCH------------------HHHHHHHTTE----EEEEEEEEEEECTT
T ss_pred EECCC---------ChH------------------HHHHHHHHhc----CCCcEEEEEcCCcc
Confidence 99954 221 0566667765 99999998876643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-07 Score=83.97 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=84.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..++.. +++|+++..++.++++ ++.+...|+..++ ...+.||+|++..
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~v~~~~ 110 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLP--LKDESFDFALMVT 110 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCC--SCTTCEEEEEEES
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCC--CCCCCeeEEEEcc
Confidence 3789999999999988765432 9999999999998876 4667788887765 2346899999853
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc-------------------
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT------------------- 318 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~------------------- 318 (384)
. +. +... ..++|..+.+.| +|||.++.++......
T Consensus 111 ~------l~------~~~~----------~~~~l~~~~~~L----~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (219)
T 1vlm_A 111 T------IC------FVDD----------PERALKEAYRIL----KKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNAR 164 (219)
T ss_dssp C------GG------GSSC----------HHHHHHHHHHHE----EEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCC
T ss_pred h------Hh------hccC----------HHHHHHHHHHHc----CCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccc
Confidence 2 11 1111 135777888876 9999999987543211
Q ss_pred -ccHHHHHHHHhcCCCEEeec
Q 016730 319 -ENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 319 -ENe~vv~~~l~~~~~~l~~~ 338 (384)
-+.+.+..++++.|++++..
T Consensus 165 ~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 165 FFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp CCCHHHHHHHHHHTTCEEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEEE
Confidence 14456667777888887665
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=85.39 Aligned_cols=116 Identities=19% Similarity=0.154 Sum_probs=82.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---ceEEEEecCCCCc------------
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---TNTIVCNYDGNEL------------ 241 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---~~v~~~~~D~~~~------------ 241 (384)
++..+||++|+ |+-|+.+|++ . .++|+++|.++++.+.+++++++.|+ +++.+..+|+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 35679999997 6777777763 3 58999999999999999999999995 5788999997643
Q ss_pred ---ccc------c-CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 242 ---PKV------L-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 242 ---~~~------~-~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+.. . ..+.||.|++|+. + . + .-+..++++| +|||+|+.-
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~-------------k----~---------~-~~~~~~l~~l----~~GG~Iv~D 153 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR-------------F----R---------V-GCALATAFSI----TRPVTLLFD 153 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS-------------S----H---------H-HHHHHHHHHC----SSCEEEEET
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC-------------C----c---------h-hHHHHHHHhc----CCCeEEEEe
Confidence 110 1 1268999999985 0 0 0 2234466664 999999765
Q ss_pred eccCCccccHHHHHHHHh
Q 016730 312 TCSIMVTENEAVIDYALK 329 (384)
Q Consensus 312 TCSi~~~ENe~vv~~~l~ 329 (384)
..+.. .....|..+++
T Consensus 154 Nv~~r--~~y~~v~~~~~ 169 (202)
T 3cvo_A 154 DYSQR--RWQHQVEEFLG 169 (202)
T ss_dssp TGGGC--SSGGGGHHHHC
T ss_pred CCcCC--cchHHHHHHHh
Confidence 43333 33455566665
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=87.68 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCceEEEeccCC---ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---------cc
Q 016730 178 EKERVIDMAAAP---GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---------VL 245 (384)
Q Consensus 178 ~g~~VLD~cagp---Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---------~~ 245 (384)
+..+|||+|||+ |..+..+++..+ .++|+++|+|+.+++.+++++.. ..++.++.+|+.+... .+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccC
Confidence 447999999999 976655545443 47999999999999999998843 3468999999986421 12
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+...||.|++.. ++. +. ..++ ...+|.++.+.| ||||+|+.++.+.
T Consensus 154 d~~~~d~v~~~~------vlh------~~-~d~~-------~~~~l~~~~~~L----~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 154 DFSRPAAIMLVG------MLH------YL-SPDV-------VDRVVGAYRDAL----APGSYLFMTSLVD 199 (274)
T ss_dssp CTTSCCEEEETT------TGG------GS-CTTT-------HHHHHHHHHHHS----CTTCEEEEEEEBC
T ss_pred CCCCCEEEEEec------hhh------hC-CcHH-------HHHHHHHHHHhC----CCCcEEEEEEecC
Confidence 235799998732 221 11 1111 245788888875 9999999988665
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.3e-08 Score=101.76 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=92.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHccC--CceEEEEeCCHHHHHHH--HHHHHH----cCCceEEEEecCCCCcccccCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSL--TANLHR----MGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~--~g~V~a~D~~~~rl~~l--~~n~~r----~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.++.+|||.|||+|+....++..++. ...++|+|+++..+..+ +.|+.. .|+.+..+...|...... ....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-~~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-EDFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-GGGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-cccC
Confidence 36889999999999999888887642 35799999999999988 666554 344444555555554321 1236
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH-----------HHHHHHHHHHHHHHchhccCCCCcEEEEEecc-CC
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK-----------CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS-IM 316 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~-----------l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS-i~ 316 (384)
+||+|++|||.++.... +..... ....+.. .......++.+++++| ++||++++.+-+ +.
T Consensus 399 kFDVVIgNPPYg~~~~~---~~e~kd-~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lL----KpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTD---PAIKRK-FAHKIIQLTGNRPQTLFGQIGVEALFLELVTELV----QDGTVISAIMPKQYL 470 (878)
T ss_dssp TEEEEEECCBCCSSCCC---HHHHHH-HHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHS----CTTCEEEEEEETHHH
T ss_pred CCCEEEECCCccccccc---hhhhhh-HHHHhhhhccccccccccccchHHHHHHHHHHhc----CCCcEEEEEEChHHh
Confidence 89999999998653221 110000 0000000 0123566889999986 999999987654 33
Q ss_pred ccc--cHHHHH-HHHhcCCC
Q 016730 317 VTE--NEAVID-YALKKRDV 333 (384)
Q Consensus 317 ~~E--Ne~vv~-~~l~~~~~ 333 (384)
... ...-+. +++++..+
T Consensus 471 f~sg~~~kkLRk~LLe~~~I 490 (878)
T 3s1s_A 471 TAQGNESKAFREFLVGNFGL 490 (878)
T ss_dssp HCCSHHHHHHHHHHTTTTCE
T ss_pred ccCChHHHHHHHHHHhCCCe
Confidence 211 244455 55666554
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-08 Score=92.49 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=69.5
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LG 246 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~ 246 (384)
..+..+++.+|++|||+|||+|..|..+++.. +.|+|+|+|+.+++.+++++.. ..++.++++|+..++.. ..
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 20 KIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHhcCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhcc
Confidence 35666788899999999999999999888753 6899999999999999999865 45799999999987421 11
Q ss_pred CCCCCEEEEcCCC
Q 016730 247 LNTVDRVLLDAPC 259 (384)
Q Consensus 247 ~~~fD~VllDaPC 259 (384)
+..|| |+.|+|.
T Consensus 95 ~~~~~-vv~NlPY 106 (255)
T 3tqs_A 95 DKPLR-VVGNLPY 106 (255)
T ss_dssp SSCEE-EEEECCH
T ss_pred CCCeE-EEecCCc
Confidence 35688 8899993
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-08 Score=94.16 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=71.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---C
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G 246 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~ 246 (384)
++..|++++|..+||+++|.||.|..|++. .++|+|+|.|+..++.+++ ++. .++.+++++..++.... .
T Consensus 14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 14 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcC
Confidence 345678899999999999999999999997 4899999999999999988 644 57999999998875432 2
Q ss_pred CCCCCEEEEcCCCCC
Q 016730 247 LNTVDRVLLDAPCSG 261 (384)
Q Consensus 247 ~~~fD~VllDaPCSg 261 (384)
..+||.||+|.++|+
T Consensus 87 ~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 87 VERVDGILADLGVSS 101 (285)
T ss_dssp CSCEEEEEEECSCCH
T ss_pred CCCcCEEEeCCcccc
Confidence 257999999999887
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=89.87 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=79.7
Q ss_pred CceEEEeccCC--ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC----CCCCC-
Q 016730 179 KERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG----LNTVD- 251 (384)
Q Consensus 179 g~~VLD~cagp--Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~----~~~fD- 251 (384)
..+|||+|||+ |+.+..+++...+..+|+++|.|+.++..++.++...+..++.++.+|++.+...+. .+.||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence 36899999997 566777777665568999999999999999998865544579999999998632111 13455
Q ss_pred ----EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 ----RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ----~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|++.+ + +.|....++ ...++....+.| +|||+|+.++-+-
T Consensus 159 ~~p~av~~~a------v------LH~l~d~~~-------p~~~l~~l~~~L----~PGG~Lvls~~~~ 203 (277)
T 3giw_A 159 TRPVALTVIA------I------VHFVLDEDD-------AVGIVRRLLEPL----PSGSYLAMSIGTA 203 (277)
T ss_dssp TSCCEEEEES------C------GGGSCGGGC-------HHHHHHHHHTTS----CTTCEEEEEEECC
T ss_pred CCcchHHhhh------h------HhcCCchhh-------HHHHHHHHHHhC----CCCcEEEEEeccC
Confidence 466543 2 123222111 245777778875 9999999997654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-08 Score=96.05 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCceEEEeccC------CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc----cCC
Q 016730 178 EKERVIDMAAA------PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGL 247 (384)
Q Consensus 178 ~g~~VLD~cag------pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~----~~~ 247 (384)
++.+|||+||| +||.++.++....+.+.|+++|+++.+. ....++.++.+|+.+++.. ...
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 56899999999 7888888887653458999999999862 2346799999999886432 002
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
++||+|++|.- . .. ..+.+.|..++++| ||||+++.....
T Consensus 287 ~sFDlVisdgs--------H--------~~-------~d~~~aL~el~rvL----KPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDGS--------H--------IN-------AHVRTSFAALFPHV----RPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECSC--------C--------CH-------HHHHHHHHHHGGGE----EEEEEEEEECGG
T ss_pred CCccEEEECCc--------c--------cc-------hhHHHHHHHHHHhc----CCCeEEEEEecc
Confidence 68999998742 0 01 12356778888876 999999998554
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=85.43 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=80.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..++ ..|+++|+++. ++.+..+|+..++ +..+.||.|++
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~~~--~~~~~fD~v~~ 121 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQVP--LEDESVDVAVF 121 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTSCS--CCTTCEEEEEE
T ss_pred cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEeccccCC--CCCCCEeEEEE
Confidence 4577899999999999876552 57999999987 3456678887754 23468999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEE
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l 335 (384)
... +. ++ . ...+|..+.++| +|||+++.+++... ..+.+.+..+++..++++
T Consensus 122 ~~~------l~-~~------~----------~~~~l~~~~~~L----~~gG~l~i~~~~~~-~~~~~~~~~~l~~~Gf~~ 173 (215)
T 2zfu_A 122 CLS------LM-GT------N----------IRDFLEEANRVL----KPGGLLKVAEVSSR-FEDVRTFLRAVTKLGFKI 173 (215)
T ss_dssp ESC------CC-SS------C----------HHHHHHHHHHHE----EEEEEEEEEECGGG-CSCHHHHHHHHHHTTEEE
T ss_pred ehh------cc-cc------C----------HHHHHHHHHHhC----CCCeEEEEEEcCCC-CCCHHHHHHHHHHCCCEE
Confidence 432 11 11 1 135677777875 99999999876532 235666777888889887
Q ss_pred eec
Q 016730 336 VPC 338 (384)
Q Consensus 336 ~~~ 338 (384)
+..
T Consensus 174 ~~~ 176 (215)
T 2zfu_A 174 VSK 176 (215)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.4e-07 Score=88.22 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=77.6
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~f 250 (384)
..++..++.+|||+|||+|..+..+++..++ ..++++|+ +..+. ++++++.+.. ++.+..+|+... .+ .|
T Consensus 178 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~p--~~ 248 (348)
T 3lst_A 178 RAGDFPATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---VP--HA 248 (348)
T ss_dssp HHSCCCSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---CC--CC
T ss_pred HhCCccCCceEEEECCccCHHHHHHHHHCCC-CEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---CC--CC
Confidence 3345677899999999999999999998764 68999999 44443 3333334443 589999998621 22 79
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|+|++--- ...+...+ ..++|+++.+.| ||||+|+......
T Consensus 249 D~v~~~~v-------------lh~~~d~~-------~~~~L~~~~~~L----kpgG~l~i~e~~~ 289 (348)
T 3lst_A 249 DVHVLKRI-------------LHNWGDED-------SVRILTNCRRVM----PAHGRVLVIDAVV 289 (348)
T ss_dssp SEEEEESC-------------GGGSCHHH-------HHHHHHHHHHTC----CTTCEEEEEECCB
T ss_pred cEEEEehh-------------ccCCCHHH-------HHHHHHHHHHhc----CCCCEEEEEEecc
Confidence 99997321 22233332 246888888886 9999999877544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=87.62 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=75.4
Q ss_pred CceEEEeccCCCh----HHHHHHHHccC---CceEEEEeCCHHHHHHHHHHHH--------------Hc---------C-
Q 016730 179 KERVIDMAAAPGG----KTTYIAALMKN---TGLIYANEMKASRLKSLTANLH--------------RM---------G- 227 (384)
Q Consensus 179 g~~VLD~cagpGg----kt~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~~--------------r~---------g- 227 (384)
+.+|||+|||+|- .++.+++.++. ...|+|+|+|+.+++.+++++- ++ |
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 5689999999998 55566666542 2489999999999999998741 10 1
Q ss_pred --C-----ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhc
Q 016730 228 --V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300 (384)
Q Consensus 228 --~-----~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~ 300 (384)
+ .+|.+...|....+.. ..+.||+|+|- .+ .....+. .|++++....+.|
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~cr------nv-------liyf~~~-------~~~~vl~~~~~~L-- 242 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCR------NV-------MIYFDKT-------TQEDILRRFVPLL-- 242 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEEC------SS-------GGGSCHH-------HHHHHHHHHGGGE--
T ss_pred eeechhhcccCeEEecccCCCCCC-cCCCeeEEEEC------Cc-------hHhCCHH-------HHHHHHHHHHHHh--
Confidence 1 2588888998874311 13689999981 11 1112222 3678899988886
Q ss_pred cCCCCcEEEEE
Q 016730 301 NSKSGGYIVYS 311 (384)
Q Consensus 301 ~lkpGG~lvYs 311 (384)
+|||+|+..
T Consensus 243 --~pgG~L~lg 251 (274)
T 1af7_A 243 --KPDGLLFAG 251 (274)
T ss_dssp --EEEEEEEEC
T ss_pred --CCCcEEEEE
Confidence 999999863
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=87.69 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHc------cC-----CceEEEEeCCH---HHHH-----------HHHHHHHH-----
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALM------KN-----TGLIYANEMKA---SRLK-----------SLTANLHR----- 225 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~------~~-----~g~V~a~D~~~---~rl~-----------~l~~n~~r----- 225 (384)
.+++.+|||+|+|+|.-++.+++.. .+ ...++++|.++ +.+. .++++++.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 3456799999999999988877754 33 25899999876 5544 34555554
Q ss_pred -------c--CCceEEEEecCCCCcccccCC---CCCCEEEEcC--CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHH
Q 016730 226 -------M--GVTNTIVCNYDGNELPKVLGL---NTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291 (384)
Q Consensus 226 -------~--g~~~v~~~~~D~~~~~~~~~~---~~fD~VllDa--PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL 291 (384)
+ |..++.+..+|+.+....... ..||+|++|+ | .++|++ |+ .+++
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp-------~~~p~l---w~-----------~~~l 196 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAP-------AKNPDM---WT-----------QNLF 196 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCT-------TTCGGG---CC-----------HHHH
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCc-------ccChhh---cC-----------HHHH
Confidence 1 224677889999874322221 2799999997 4 346643 22 3467
Q ss_pred HHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 292 ~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
....+.| +|||+|+.-|++ ..|...|...+|++...
T Consensus 197 ~~l~~~L----~pGG~l~tysaa-------~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 197 NAMARLA----RPGGTLATFTSA-------GFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp HHHHHHE----EEEEEEEESCCB-------HHHHHHHHHHTEEEEEE
T ss_pred HHHHHHc----CCCcEEEEEeCC-------HHHHHHHHHCCCEEEeC
Confidence 7777775 999999843332 36777777778887654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-08 Score=90.91 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCCCceEEEeccCCChHHHHHHHH--ccC-CceEEEEeC--CHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAAL--MKN-TGLIYANEM--KASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~--~~~-~g~V~a~D~--~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~~ 249 (384)
++||.+|||+||||||.+..++++ ++. .|.|+|+|+ .+-.. .-.|+.-+.+..+ |.+.+. ..+
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~~----~~~ 139 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYKP----SEI 139 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGSC----CCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCCC----CCC
Confidence 578999999999999999999887 432 467788873 22100 0024333455556 887643 358
Q ss_pred CCEEEEcCCCCCCCc
Q 016730 250 VDRVLLDAPCSGTGV 264 (384)
Q Consensus 250 fD~VllDaPCSg~G~ 264 (384)
||+||+|..-+ +|.
T Consensus 140 ~DvVLSDMAPn-SG~ 153 (269)
T 2px2_A 140 SDTLLCDIGES-SPS 153 (269)
T ss_dssp CSEEEECCCCC-CSC
T ss_pred CCEEEeCCCCC-CCc
Confidence 99999997555 764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=89.41 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=66.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-ccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~fD~VllD 256 (384)
+|.+|||+|||+|+.|..+++. +.+.|+|+|+++.+++...++ ....+.....+++.+.. .++...||.|++|
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~----~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d 158 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ----DDRVRSMEQYNFRYAEPVDFTEGLPSFASID 158 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT----CTTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh----CcccceecccCceecchhhCCCCCCCEEEEE
Confidence 5789999999999999988886 346999999999998763322 11111222233333221 1222459999998
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
...... ..+|..+.++| ||||+++..
T Consensus 159 ~sf~sl-------------------------~~vL~e~~rvL----kpGG~lv~l 184 (291)
T 3hp7_A 159 VSFISL-------------------------NLILPALAKIL----VDGGQVVAL 184 (291)
T ss_dssp CSSSCG-------------------------GGTHHHHHHHS----CTTCEEEEE
T ss_pred eeHhhH-------------------------HHHHHHHHHHc----CcCCEEEEE
Confidence 753211 33677777875 999999986
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=88.08 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=68.1
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
...+..+++.++++|||+|||+|..|..+++.. +.|+|+|+|+.+++.+++++.. ..++.++++|+..++... .
T Consensus 20 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-~ 93 (244)
T 1qam_A 20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-N 93 (244)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-S
T ss_pred HHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-C
Confidence 334555677889999999999999999999874 6899999999999999998864 357999999998765321 1
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
..| .|+.|+|.
T Consensus 94 ~~~-~vv~nlPy 104 (244)
T 1qam_A 94 QSY-KIFGNIPY 104 (244)
T ss_dssp CCC-EEEEECCG
T ss_pred CCe-EEEEeCCc
Confidence 345 78999994
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.2e-08 Score=92.80 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=73.2
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC--
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-- 247 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~-- 247 (384)
++.+|.++||..++|+++|.||.|..|++.+++.|+|+|+|.++..++.++ + +.-.++.+++++..++......
T Consensus 49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-r---L~~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-T---IDDPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-T---CCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-h---hcCCcEEEEeCCHHHHHHHHHhcC
Confidence 445678899999999999999999999999887899999999999999873 3 3345788999988877543311
Q ss_pred --CCCCEEEEcCCCCCC
Q 016730 248 --NTVDRVLLDAPCSGT 262 (384)
Q Consensus 248 --~~fD~VllDaPCSg~ 262 (384)
+++|.||+|-.||+.
T Consensus 125 ~~~~vDgILfDLGVSS~ 141 (347)
T 3tka_A 125 LIGKIDGILLDLGVSSP 141 (347)
T ss_dssp CTTCEEEEEEECSCCHH
T ss_pred CCCcccEEEECCccCHH
Confidence 269999999999975
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=88.61 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=68.2
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--c
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--L 245 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~ 245 (384)
..+..+++.++++|||+|||+|..|..+++.... .+.|+|+|+|+.+++.++++. ..++.++++|+..++.. .
T Consensus 33 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~~~ 108 (279)
T 3uzu_A 33 AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGSIA 108 (279)
T ss_dssp HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGGGS
T ss_pred HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhHhc
Confidence 3456677889999999999999999999988643 356999999999999999983 45799999999876421 1
Q ss_pred CCC--CCCEEEEcCCC
Q 016730 246 GLN--TVDRVLLDAPC 259 (384)
Q Consensus 246 ~~~--~fD~VllDaPC 259 (384)
... ..+.|+.++|.
T Consensus 109 ~~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 109 RPGDEPSLRIIGNLPY 124 (279)
T ss_dssp CSSSSCCEEEEEECCH
T ss_pred ccccCCceEEEEccCc
Confidence 101 34579999993
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=87.74 Aligned_cols=100 Identities=11% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc-cccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~-~~~~~~~fD~VllD 256 (384)
+|.+|||+|||+|+.|..+++. +...|+|+|+++.+++.++++..+.+ .....+..... ..+....||.+.+|
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~D 110 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDERVV----VMEQFNFRNAVLADFEQGRPSFTSID 110 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTTEE----EECSCCGGGCCGGGCCSCCCSEEEEC
T ss_pred CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCcccc----ccccceEEEeCHhHcCcCCCCEEEEE
Confidence 5779999999999999998886 23589999999999988665433221 11111221111 11211247888888
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
...+.. ..+|..+.++| ||||+++..+
T Consensus 111 ~v~~~l-------------------------~~~l~~i~rvL----kpgG~lv~~~ 137 (232)
T 3opn_A 111 VSFISL-------------------------DLILPPLYEIL----EKNGEVAALI 137 (232)
T ss_dssp CSSSCG-------------------------GGTHHHHHHHS----CTTCEEEEEE
T ss_pred EEhhhH-------------------------HHHHHHHHHhc----cCCCEEEEEE
Confidence 764332 34677788875 9999999863
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=84.93 Aligned_cols=114 Identities=13% Similarity=0.037 Sum_probs=86.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
++..+..+|||+|||+|..+..+++..++ .+++..|. +..++.+++++...+..++.++.+|+...+ . ..+|+|
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~--~--~~~D~~ 248 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP--L--PEADLY 248 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC--C--CCCSEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC--C--CCceEE
Confidence 34566789999999999999999999875 67888896 788999988887666778999999987543 2 458999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++- .+...|+.++. .+||+++.+.| +|||+|+....-+.+
T Consensus 249 ~~~-------------~vlh~~~d~~~-------~~iL~~~~~al----~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 249 ILA-------------RVLHDWADGKC-------SHLLERIYHTC----KPGGGILVIESLLDE 288 (353)
T ss_dssp EEE-------------SSGGGSCHHHH-------HHHHHHHHHHC----CTTCEEEEEECCCCT
T ss_pred Eee-------------eecccCCHHHH-------HHHHHHHHhhC----CCCCEEEEEEeeeCC
Confidence 871 23344555543 46888988886 999999988765543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-07 Score=92.80 Aligned_cols=131 Identities=6% Similarity=0.038 Sum_probs=86.5
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE--EEecCCCCcccccCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI--VCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~--~~~~D~~~~~~~~~~~~f 250 (384)
.+.+.++.+|||+|||+|..+..+++. ...|+++|+|+..++.++++ |+.... +...++..++ +..++|
T Consensus 102 ~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~--~~~~~f 172 (416)
T 4e2x_A 102 TELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVR--RTEGPA 172 (416)
T ss_dssp TTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHH--HHHCCE
T ss_pred HhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcc--cCCCCE
Confidence 345678999999999999999888875 35899999999999888765 554322 1122222222 123789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC---------------
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI--------------- 315 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi--------------- 315 (384)
|+|++.- ++..-| . ...+|..+.++| ||||+++.++-..
T Consensus 173 D~I~~~~------vl~h~~------d----------~~~~l~~~~r~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~ 226 (416)
T 4e2x_A 173 NVIYAAN------TLCHIP------Y----------VQSVLEGVDALL----APDGVFVFEDPYLGDIVAKTSFDQIFDE 226 (416)
T ss_dssp EEEEEES------CGGGCT------T----------HHHHHHHHHHHE----EEEEEEEEEEECHHHHHHHTCGGGCSTT
T ss_pred EEEEECC------hHHhcC------C----------HHHHHHHHHHHc----CCCeEEEEEeCChHHhhhhcchhhhhhh
Confidence 9999842 222111 1 245778888876 9999999876421
Q ss_pred -CccccHHHHHHHHhcCCCEEeec
Q 016730 316 -MVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 316 -~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
...-..+.+..++++.+++++.+
T Consensus 227 ~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 227 HFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp CCEECCHHHHHHHHHHTTEEEEEE
T ss_pred hhhcCCHHHHHHHHHHcCCEEEEE
Confidence 01123456677777788777654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-07 Score=88.64 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=69.0
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
..+..+++.+| +|||+|||+|..|..+++.. +.|+|+|+|+..++.+++++. + .++.++++|+..++... ..
T Consensus 38 ~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~~~~~~-~~ 109 (271)
T 3fut_A 38 RIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALLYPWEE-VP 109 (271)
T ss_dssp HHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGGSCGGG-SC
T ss_pred HHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhhCChhh-cc
Confidence 35566778889 99999999999999998863 589999999999999998875 2 57999999998765321 13
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
.||.|+.++|..
T Consensus 110 ~~~~iv~NlPy~ 121 (271)
T 3fut_A 110 QGSLLVANLPYH 121 (271)
T ss_dssp TTEEEEEEECSS
T ss_pred CccEEEecCccc
Confidence 689999999953
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-07 Score=87.23 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=66.3
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
..+..+++.++++|||+|||+|..|..+++. +.+.|+|+|+|+..++.++++ +..++.++++|+..++......
T Consensus 22 ~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~~~ 95 (249)
T 3ftd_A 22 KIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSLGK 95 (249)
T ss_dssp HHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGSCS
T ss_pred HHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHccC
Confidence 3456667888999999999999999988875 236899999999999999887 3457899999998875321112
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.| .|+.|+|.
T Consensus 96 ~~-~vv~NlPy 105 (249)
T 3ftd_A 96 EL-KVVGNLPY 105 (249)
T ss_dssp SE-EEEEECCT
T ss_pred Cc-EEEEECch
Confidence 34 89999995
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-07 Score=85.84 Aligned_cols=137 Identities=13% Similarity=0.093 Sum_probs=76.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+++.+|||+||||||.+..+++..+ .+.|+|+|+.......... ....|. ++.....+.... .+.++.||+|++
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~--~l~~~~~DlVls 146 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIH--RLEPVKCDTLLC 146 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTT--TSCCCCCSEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceeh--hcCCCCccEEEe
Confidence 46788999999999999988776543 3567888877331000000 001122 334444543221 133478999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEEeccCCccccHHHHHHHHhcC-CC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYSTCSIMVTENEAVIDYALKKR-DV 333 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYsTCSi~~~ENe~vv~~~l~~~-~~ 333 (384)
|..-+ +|.- .+... .+..+|+-|.+.| ||| |.+|...-.-+-.+-.+.++.+-+.+ .+
T Consensus 147 D~apn-sG~~-------------~~D~~--rs~~LL~~a~~~L----kpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V 206 (277)
T 3evf_A 147 DIGES-SSSS-------------VTEGE--RTVRVLDTVEKWL----ACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGT 206 (277)
T ss_dssp CCCCC-CSCH-------------HHHHH--HHHHHHHHHHHHH----TTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCE
T ss_pred cCccC-cCch-------------HHHHH--HHHHHHHHHHHHh----CCCCCeEEEEecCCCCccHHHHHHHHHHhcCCE
Confidence 97555 6641 11111 2233478888886 999 99997543221233344444444443 34
Q ss_pred EEee
Q 016730 334 KLVP 337 (384)
Q Consensus 334 ~l~~ 337 (384)
....
T Consensus 207 ~~~K 210 (277)
T 3evf_A 207 VIRN 210 (277)
T ss_dssp EECC
T ss_pred EEEe
Confidence 4443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-07 Score=84.74 Aligned_cols=108 Identities=20% Similarity=0.117 Sum_probs=77.5
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
..+|||+|||.|-.+..++...+ ...++|+|+|+.+++.+++|+.++|+. ..+...|...-+ ..+.||+||+.
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~---p~~~~DvaL~l-- 205 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDR---LDEPADVTLLL-- 205 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSC---CCSCCSEEEET--
T ss_pred CceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccC---CCCCcchHHHH--
Confidence 56999999999998887766543 479999999999999999999999997 566677766433 23789999872
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEeccCC
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSIM 316 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCSi~ 316 (384)
+. +..|-..|+..+-..++.| ++||.+| +=|-|+.
T Consensus 206 ----------------kt---i~~Le~q~kg~g~~ll~aL----~~~~vvVSfp~ksl~ 241 (281)
T 3lcv_B 206 ----------------KT---LPCLETQQRGSGWEVIDIV----NSPNIVVTFPTKSLG 241 (281)
T ss_dssp ----------------TC---HHHHHHHSTTHHHHHHHHS----SCSEEEEEEECC---
T ss_pred ----------------HH---HHHhhhhhhHHHHHHHHHh----CCCCEEEeccchhhc
Confidence 11 2333344443444667765 9999887 4454453
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-06 Score=79.28 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=74.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+..+|||+|||.|-.+..+. +...++|+|+|+..++.+++++.++|. +..+...|....+. .+.||+||+-
T Consensus 105 ~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~---~~~~DvvLll- 175 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPP---AEAGDLALIF- 175 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCC---CCBCSEEEEE-
T ss_pred CCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCC---CCCcchHHHH-
Confidence 46699999999998776544 457999999999999999999999995 56777788776442 2689999872
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEeccCC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSIM 316 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCSi~ 316 (384)
+. +..|...|+..+...++.| +++|.+| +=|-|+.
T Consensus 176 -----------------k~---lh~LE~q~~~~~~~ll~aL----~~~~vvVsfPtksl~ 211 (253)
T 3frh_A 176 -----------------KL---LPLLEREQAGSAMALLQSL----NTPRMAVSFPTRSLG 211 (253)
T ss_dssp -----------------SC---HHHHHHHSTTHHHHHHHHC----BCSEEEEEEECC---
T ss_pred -----------------HH---HHHhhhhchhhHHHHHHHh----cCCCEEEEcChHHhc
Confidence 11 2234444555555666664 8887776 3344654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-07 Score=85.31 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=76.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEe-cCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~-~D~~~~~~~~~~~~fD~Vll 255 (384)
++|.+|||+||||||++..+++.++ ...|+++|+.......... ...++.+-+.+.. .|... +.+..||+|++
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~----l~~~~~DlVls 153 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFT----MPTEPSDTLLC 153 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTT----SCCCCCSEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCCceEEeecCceeee----cCCCCcCEEee
Confidence 4799999999999999999887653 3578899986431000000 0001212222321 13322 23468999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEEeccCCccccHHHHHHHHhcC-CC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYSTCSIMVTENEAVIDYALKKR-DV 333 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYsTCSi~~~ENe~vv~~~l~~~-~~ 333 (384)
|...+ +|.- .+... .|..+|.-|.+.| +|| |.+|.-.-..+-.+-.+.+..+-+.+ .+
T Consensus 154 D~APn-sG~~-------------~~D~~--rs~~LL~~A~~~L----kpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V 213 (300)
T 3eld_A 154 DIGES-SSNP-------------LVERD--RTMKVLENFERWK----HVNTENFCVKVLAPYHPDVIEKLERLQLRFGGG 213 (300)
T ss_dssp CCCCC-CSSH-------------HHHHH--HHHHHHHHHHHHC----CTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCE
T ss_pred cCcCC-CCCH-------------HHHHH--HHHHHHHHHHHHh----cCCCCcEEEEeccccCccHHHHHHHHHHhCCcE
Confidence 98877 8841 11111 2344477777775 999 99986432222333344444444443 34
Q ss_pred EEee
Q 016730 334 KLVP 337 (384)
Q Consensus 334 ~l~~ 337 (384)
.+..
T Consensus 214 ~~~K 217 (300)
T 3eld_A 214 IVRV 217 (300)
T ss_dssp EECC
T ss_pred EEEe
Confidence 4443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-07 Score=88.39 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=75.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
++++.+|||+||||||++..++..++ ...|+++|+.......... .+.+|.+-+.+ ..+.. .. .+...++|+||+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~-~~~~d-v~-~l~~~~~DvVLS 162 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIM-RTTLGWNLIRF-KDKTD-VF-NMEVIPGDTLLC 162 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTGGGEEE-ECSCC-GG-GSCCCCCSEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccc-cccCCCceEEe-eCCcc-hh-hcCCCCcCEEEe
Confidence 35788999999999999988776653 3578999997542111000 00123222323 32221 11 123478999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC--cEEEEEeccCCc---cccHHHHHHHHhc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG--GYIVYSTCSIMV---TENEAVIDYALKK 330 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG--G~lvYsTCSi~~---~ENe~vv~~~l~~ 330 (384)
|..-+ +|.- .+... .+..+|.-|.+.| +|| |.+|.- ++. .+-.+.++.+-+.
T Consensus 163 DmApn-sG~~-------------~~D~~--rs~~LL~~A~~~L----k~g~~G~Fv~K---vF~pyg~~~~~l~~~lk~~ 219 (282)
T 3gcz_A 163 DIGES-SPSI-------------AVEEQ--RTLRVLNCAKQWL----QEGNYTEFCIK---VLCPYTPLIMEELSRLQLK 219 (282)
T ss_dssp CCCCC-CSCH-------------HHHHH--HHHHHHHHHHHHH----HHHCCCEEEEE---ESCCCSHHHHHHHHHHHHH
T ss_pred cCccC-CCCh-------------HHHHH--HHHHHHHHHHHHc----CCCCCCcEEEE---EecCCCccHHHHHHHHHHh
Confidence 97655 7641 11111 2233477788876 999 999853 444 3333444444334
Q ss_pred C-CCEEee
Q 016730 331 R-DVKLVP 337 (384)
Q Consensus 331 ~-~~~l~~ 337 (384)
+ .+....
T Consensus 220 F~~V~~~K 227 (282)
T 3gcz_A 220 HGGGLVRV 227 (282)
T ss_dssp HCCEEECC
T ss_pred cCCEEEEc
Confidence 3 344443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=8.4e-07 Score=92.23 Aligned_cols=75 Identities=13% Similarity=0.004 Sum_probs=64.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+-+|||+|||.|..+..||++ +..|+|+|.++..++.++..+...|..++.+.++|+.++......+.||+|++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence 4569999999999999999886 36899999999999999999998887789999999887744344478999997
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.8e-06 Score=80.94 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=76.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.+..+|+.. + . ..||+|++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~--p~~D~v~~ 252 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-S--I--PNADAVLL 252 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-C--C--CCCSEEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCC-CeEEEeeC-HHHHhhccc------CCCcEEEeccccC-C--C--CCccEEEe
Confidence 456789999999999999999988754 68999999 888876654 2458888999865 2 2 24999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC---CcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS---GGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp---GG~lvYsTCSi~ 316 (384)
--. ...+...+ ..++|+++.+.| || ||+|+.+.....
T Consensus 253 ~~~-------------lh~~~d~~-------~~~~l~~~~~~L----~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 253 KYI-------------LHNWTDKD-------CLRILKKCKEAV----TNDGKRGKVTIIDMVID 292 (352)
T ss_dssp ESC-------------GGGSCHHH-------HHHHHHHHHHHH----SGGGCCCEEEEEECEEC
T ss_pred ehh-------------hccCCHHH-------HHHHHHHHHHhC----CCCCCCcEEEEEEeecC
Confidence 321 12233322 236788888886 99 999998876543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-06 Score=81.85 Aligned_cols=104 Identities=11% Similarity=0.073 Sum_probs=76.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|+.. + ++ .. |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~p-~~-D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPS-INAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-G--VP-KG-DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C--CC-CC-SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-C--CC-CC-CEEEE
Confidence 456789999999999999999998764 68999999 777766543 2568999999876 2 22 23 99987
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
--. ...|...+. .++|+++.+.| ||||+|+.....+.
T Consensus 268 ~~v-------------lh~~~~~~~-------~~~l~~~~~~L----~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 268 KWI-------------CHDWSDEHC-------LKLLKNCYAAL----PDHGKVIVAEYILP 304 (368)
T ss_dssp ESC-------------GGGBCHHHH-------HHHHHHHHHHS----CTTCEEEEEECCCC
T ss_pred ech-------------hhcCCHHHH-------HHHHHHHHHHc----CCCCEEEEEEeccC
Confidence 321 223343332 46788888886 99999998876654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-07 Score=85.13 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=64.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cC-
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LG- 246 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~- 246 (384)
.+..+++.+|++|||+|||+|..|. ++ .. ..+.|+|+|+|+.+++.+++++... .++.++++|+..++.. ..
T Consensus 13 iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~ 87 (252)
T 1qyr_A 13 IVSAINPQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp HHHHHCCCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHH
T ss_pred HHHhcCCCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcc
Confidence 3455678889999999999999999 54 32 2223999999999999999887543 5799999999876421 10
Q ss_pred CCCCCEEEEcCCCC
Q 016730 247 LNTVDRVLLDAPCS 260 (384)
Q Consensus 247 ~~~fD~VllDaPCS 260 (384)
....|.|+.++|..
T Consensus 88 ~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 88 MGQPLRVFGNLPYN 101 (252)
T ss_dssp HTSCEEEEEECCTT
T ss_pred cCCceEEEECCCCC
Confidence 02458999999963
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-06 Score=81.95 Aligned_cols=120 Identities=18% Similarity=0.081 Sum_probs=72.8
Q ss_pred CCCCCceEEEecc------CCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 175 APQEKERVIDMAA------APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~ca------gpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.+..|++|||+|| +||+ ..+.+..+..+.|+++|+.+--. ..+ .++.+|...+.. ..
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~---~~ 168 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVHT---AN 168 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEEE---SS
T ss_pred eecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEcccccccc---CC
Confidence 4557999999997 9999 44555544436999999976210 122 346899765432 37
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
+||+||.|.....+|... .+..+ +. .|. ...|.-|.+. |+|||.++.= ++.-|.++.+..+.
T Consensus 169 k~DLVISDMAPNtTG~~D-~d~~R---s~----~L~---ElALdfA~~~----LkpGGsFvVK---VFQGsg~~~L~~lr 230 (344)
T 3r24_A 169 KWDLIISDMYDPRTKHVT-KENDS---KE----GFF---TYLCGFIKQK----LALGGSIAVK---ITEHSWNADLYKLM 230 (344)
T ss_dssp CEEEEEECCCCTTSCSSC-SCCCC---CC----THH---HHHHHHHHHH----EEEEEEEEEE---ECSSSCCHHHHHHH
T ss_pred CCCEEEecCCCCcCCccc-cchhH---HH----HHH---HHHHHHHHHh----CcCCCEEEEE---EecCCCHHHHHHHH
Confidence 899999999888888722 11111 11 011 1133334444 5999999854 34333344444444
Q ss_pred h
Q 016730 329 K 329 (384)
Q Consensus 329 ~ 329 (384)
+
T Consensus 231 k 231 (344)
T 3r24_A 231 G 231 (344)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.5e-06 Score=81.01 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=90.3
Q ss_pred CceEEEeccCCChHHHHHHHHcc----CCceEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK----NTGLIYANEMKA--------------------------SRLKSLTANLHRMGV 228 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~----~~g~V~a~D~~~--------------------------~rl~~l~~n~~r~g~ 228 (384)
..+||++|++.|+-+++++..++ ..++|+++|... .+++.+++|+++.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 34899999999999999998774 257899999641 157889999999998
Q ss_pred --ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 229 --TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 229 --~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
+++.++.+|+.+.......++||.|++|+- + ..-....|+.++..| +|||
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD-------------~-----------y~~~~~~Le~~~p~L----~pGG 238 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD-------------L-----------YESTWDTLTNLYPKV----SVGG 238 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC-------------S-----------HHHHHHHHHHHGGGE----EEEE
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC-------------c-----------cccHHHHHHHHHhhc----CCCE
Confidence 679999999876432233468999999973 0 011245677788876 9999
Q ss_pred EEEEEeccCCccccHHHHHHHHhcCC
Q 016730 307 YIVYSTCSIMVTENEAVIDYALKKRD 332 (384)
Q Consensus 307 ~lvYsTCSi~~~ENe~vv~~~l~~~~ 332 (384)
+||.--....+.+.+ -|..|+++++
T Consensus 239 iIv~DD~~~~~G~~~-Av~Ef~~~~~ 263 (282)
T 2wk1_A 239 YVIVDDYMMCPPCKD-AVDEYRAKFD 263 (282)
T ss_dssp EEEESSCTTCHHHHH-HHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHhcC
Confidence 999766544455444 4445566655
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.3e-06 Score=80.75 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=76.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|+.. + ++ .. |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p-~~-D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-E--VP-SG-DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C--CC-CC-SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-C--CC-CC-CEEEe
Confidence 556789999999999999999998865 68999999 777665543 2578999999876 3 22 23 99987
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
-- +...|..++. .++|+++.+.| ||||+|+.....+.
T Consensus 266 ~~-------------vlh~~~d~~~-------~~~L~~~~~~L----~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 266 KW-------------ILHDWSDQHC-------ATLLKNCYDAL----PAHGKVVLVQCILP 302 (364)
T ss_dssp ES-------------CGGGSCHHHH-------HHHHHHHHHHS----CTTCEEEEEECCBC
T ss_pred hH-------------HhccCCHHHH-------HHHHHHHHHHc----CCCCEEEEEEeccC
Confidence 32 1233444332 46788888886 99999998876543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.9e-06 Score=78.87 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=75.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.+..+|+.. + . ..||+|++-
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~--~~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-S--I--PSADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-C--C--CCCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEecc-HHHHhhccc------CCCcEEEeCccCC-C--C--CCceEEEEc
Confidence 46789999999999999999998754 68999999 677765543 3568898999876 3 2 259999984
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC---CcEEEEEeccCC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS---GGYIVYSTCSIM 316 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp---GG~lvYsTCSi~ 316 (384)
-. ...+...+ ..++|+++.+.| || ||+|+.......
T Consensus 259 ~v-------------lh~~~d~~-------~~~~l~~~~~~L----~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 259 WV-------------LHDWNDEQ-------SLKILKNSKEAI----SHKGKDGKVIIIDISID 297 (358)
T ss_dssp SC-------------GGGSCHHH-------HHHHHHHHHHHT----GGGGGGCEEEEEECEEC
T ss_pred cc-------------ccCCCHHH-------HHHHHHHHHHhC----CCCCCCcEEEEEEeccC
Confidence 22 12233322 236888888886 99 999988766543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-06 Score=84.96 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+++|++|||+||+|||.|..+++. .+.|+|+|+.+ +...+ ....+|.++..|+..+... ...||.|++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-----l~~~l--~~~~~V~~~~~d~~~~~~~--~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-----MAQSL--MDTGQVTWLREDGFKFRPT--RSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-----CCHHH--HTTTCEEEECSCTTTCCCC--SSCEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-----cChhh--ccCCCeEEEeCccccccCC--CCCcCEEEE
Confidence 568999999999999999988775 47999999753 11112 2345789999999876532 368999999
Q ss_pred cCCC
Q 016730 256 DAPC 259 (384)
Q Consensus 256 DaPC 259 (384)
|.-|
T Consensus 277 Dm~~ 280 (375)
T 4auk_A 277 DMVE 280 (375)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 9864
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.5e-06 Score=80.66 Aligned_cols=103 Identities=11% Similarity=0.068 Sum_probs=75.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++..++ ..++++|+ +..++.+++ ..++.++.+|+.. + . ..||+|++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~--~~~D~v~~ 273 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-S--V--PQGDAMIL 273 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C--C--CCEEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-C--C--CCCCEEEE
Confidence 456789999999999999999998754 68999999 888776553 2468899999876 2 2 23999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
-- + ...+...+ ..++|+++.+.| ||||+|+.+....
T Consensus 274 ~~------~-------lh~~~d~~-------~~~~l~~~~~~L----~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 274 KA------V-------CHNWSDEK-------CIEFLSNCHKAL----SPNGKVIIVEFIL 309 (372)
T ss_dssp ES------S-------GGGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEEE
T ss_pred ec------c-------cccCCHHH-------HHHHHHHHHHhc----CCCCEEEEEEecc
Confidence 32 1 12233222 236788888886 9999999876543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.1e-06 Score=77.57 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~~fD~Vl 254 (384)
+++|.+|||+||||||.+.+.+...+ ...|+|+|+-..-.+. -...+.+|...+.+..+ |....+. ..+|.||
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~----~~~Dtll 149 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP----EKCDTLL 149 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC----CCCSEEE
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC----ccccEEE
Confidence 46899999999999999987777654 3589999996432110 00113456677888887 8654443 5799999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
||--
T Consensus 150 cDIg 153 (267)
T 3p8z_A 150 CDIG 153 (267)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9953
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.8e-06 Score=81.55 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=75.8
Q ss_pred cccEEEecCCCCCCCCcccccceEEEeCCcCcchh---hh---cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEe
Q 016730 137 KVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPV---MA---LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANE 210 (384)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~---~~---L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D 210 (384)
..|++-+++. .-..+.+|.+|-..+-+....++. .+ +..-.+..+||+.+|+|..+..+.+ ...+++.+|
T Consensus 45 G~G~Y~L~~~-~a~ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~~~n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE 120 (283)
T 2oo3_A 45 GRGIYDLKDK-QSLKTEEYKEGINPVWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLR---SQDRLYLCE 120 (283)
T ss_dssp TTSEEETTCC-----CCGGGGTHHHHHHTGGGSCGGGHHHHHHHHHHSSSSSCCEEECHHHHHHHHSC---TTSEEEEEC
T ss_pred CcCccCCCCh-HHhhcHHHHHHHHHHHhcccCCcHHHHHHHHHHHHhcCCCceeEeCCcHHHHHHHcC---CCCeEEEEe
Confidence 3455544332 345688999886555321111111 11 1112456799999999998875544 346899999
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCEEEEcCCC
Q 016730 211 MKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLDAPC 259 (384)
Q Consensus 211 ~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~VllDaPC 259 (384)
.++..++.+++|++. ..++.+.+.|+....... +..+||.|++|||.
T Consensus 121 ~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 121 LHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp CSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 999999999999975 356889999976532211 12479999999995
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.92 E-value=6.9e-06 Score=71.27 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=74.6
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~ 252 (384)
++.++|++|||++||. +++|+++.+++.++++... ++.+..+|+..++.. +..++||.
T Consensus 8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeE
Confidence 4678999999999985 2389999999999887532 367778888876531 13478999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc------ccHHHHHH
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT------ENEAVIDY 326 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~------ENe~vv~~ 326 (384)
|++.-. ...+. ++ ..++|.++.+.| ||||+++.+.-..... -..+.+..
T Consensus 67 V~~~~~---l~~~~--~~----------------~~~~l~~~~r~L----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (176)
T 2ld4_A 67 ILSGLV---PGSTT--LH----------------SAEILAEIARIL----RPGGCLFLKEPVETAVDNNSKVKTASKLCS 121 (176)
T ss_dssp EEECCS---TTCCC--CC----------------CHHHHHHHHHHE----EEEEEEEEEEEEESSSCSSSSSCCHHHHHH
T ss_pred EEECCh---hhhcc--cC----------------HHHHHHHHHHHC----CCCEEEEEEcccccccccccccCCHHHHHH
Confidence 997321 11110 11 134778888886 9999999854321110 12445556
Q ss_pred HHhcCCC
Q 016730 327 ALKKRDV 333 (384)
Q Consensus 327 ~l~~~~~ 333 (384)
.++..++
T Consensus 122 ~l~~aGf 128 (176)
T 2ld4_A 122 ALTLSGL 128 (176)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6777777
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00027 Score=69.69 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=59.8
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-c-----CCCCCCEE
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-L-----GLNTVDRV 253 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~-----~~~~fD~V 253 (384)
.+|+|+|||.||.+.-+.+. +-..|.|+|+++..++..+.|.. +..+++.|..++... . ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 47999999999999877665 23467899999999999988852 455667888876321 1 23679999
Q ss_pred EEcCCCCCCCcCCC
Q 016730 254 LLDAPCSGTGVISK 267 (384)
Q Consensus 254 llDaPCSg~G~~~r 267 (384)
+.+|||.+.-...+
T Consensus 76 ~ggpPCQ~fS~ag~ 89 (376)
T 3g7u_A 76 IGGPPCQGFSSIGK 89 (376)
T ss_dssp EECCCCCTTC----
T ss_pred EecCCCCCcccccC
Confidence 99999988766554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00029 Score=67.07 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=81.8
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc--C---CceEEEEecCCCCccccc
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--G---VTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~--g---~~~v~~~~~D~~~~~~~~ 245 (384)
++++.+. ..+||=+|.|-|+.+..++..- +..+|+.+|+|+..++.+++-+..+ | -.++.++.+|+..+-...
T Consensus 77 ~l~~~p~-pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~ 154 (294)
T 3o4f_A 77 PLLAHGH-AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT 154 (294)
T ss_dssp HHHHSSC-CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS
T ss_pred HHhhCCC-CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc
Confidence 3334444 4689999999999887766643 2358999999999999999887543 2 245899999999875433
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.++||+|++|.+-. .|. ... ..+ ++.++.+.+.| +|||.+|.-+
T Consensus 155 -~~~yDvIi~D~~dp-~~~-----~~~-L~t-----------~eFy~~~~~~L----~p~Gv~v~q~ 198 (294)
T 3o4f_A 155 -SQTFDVIISDCTDP-IGP-----GES-LFT-----------SAFYEGCKRCL----NPGGIFVAQN 198 (294)
T ss_dssp -SCCEEEEEESCCCC-CCT-----TCC-SSC-----------CHHHHHHHHTE----EEEEEEEEEE
T ss_pred -cccCCEEEEeCCCc-CCC-----chh-hcC-----------HHHHHHHHHHh----CCCCEEEEec
Confidence 47899999998731 121 111 111 34566666665 9999999643
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.79 E-value=5e-05 Score=73.89 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=55.2
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-ccCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~fD~VllDaP 258 (384)
.+|+|++||.||.+..+.+.--....|+++|+++..++..+.|.. +..++++|...+.. .+....+|+|+.+||
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 579999999999998877652111379999999999999999864 23356788877642 111126999999999
Q ss_pred CCCCCcCCC
Q 016730 259 CSGTGVISK 267 (384)
Q Consensus 259 CSg~G~~~r 267 (384)
|.+..+..+
T Consensus 78 Cq~fS~ag~ 86 (343)
T 1g55_A 78 CQPFTRIGR 86 (343)
T ss_dssp ---------
T ss_pred CcchhhcCC
Confidence 988876644
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=69.94 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=60.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
+.+|+|+|||.||.+..+.+. +-..|+++|+++..++..+.|..... ++|...+.... ...+|+|+.+||
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~~-~~~~D~l~~gpP 80 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEKT-IPDHDILCAGFP 80 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGGG-SCCCSEEEEECC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHhh-CCCCCEEEECCC
Confidence 568999999999988876654 33478999999999999999974321 57777664321 146999999999
Q ss_pred CCCCCcCCCC
Q 016730 259 CSGTGVISKD 268 (384)
Q Consensus 259 CSg~G~~~r~ 268 (384)
|.+.-+..+.
T Consensus 81 CQ~fS~ag~~ 90 (327)
T 2c7p_A 81 CQAFSISGKQ 90 (327)
T ss_dssp CTTTCTTSCC
T ss_pred CCCcchhccc
Confidence 9887666553
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00037 Score=65.84 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~~fD~Vl 254 (384)
++++.+|||+||||||.+.+.+...+ ...|+|+|+-..-.+. -...+.+|-..|.+... |+..++. ..+|.|+
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~----~~~D~iv 165 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS----ECCDTLL 165 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC----CCCSEEE
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC----CCCCEEE
Confidence 46788999999999999987766543 3589999986541100 00001233344777665 7766654 5699999
Q ss_pred EcCCCCCCC
Q 016730 255 LDAPCSGTG 263 (384)
Q Consensus 255 lDaPCSg~G 263 (384)
||.- -.+|
T Consensus 166 cDig-eSs~ 173 (321)
T 3lkz_A 166 CDIG-ESSS 173 (321)
T ss_dssp ECCC-CCCS
T ss_pred EECc-cCCC
Confidence 9987 4443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=76.29 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=79.5
Q ss_pred CceEEEeccCCChH---HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGK---TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgk---t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+..|||+|||+|-. ++..++......+|+|+|.++. ...+++..+.+|..+ |+++++|.+++.. .+++|+|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~L---PEKVDIIV 433 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVA---PEKADIIV 433 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCC---SSCEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccC---CcccCEEE
Confidence 35799999999987 4444444332337999999985 556777888888865 8999999998743 27899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC--ccccHHHHHH
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM--VTENEAVIDY 326 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~--~~ENe~vv~~ 326 (384)
... .|..-- . +. -.+.|.++-++ |||||.++=+.|+++ +-+.+..-+.
T Consensus 434 SEw----MG~fLl--------~-E~-------mlevL~Ardr~----LKPgGimiPs~atlyiapi~~~~l~~e 483 (637)
T 4gqb_A 434 SEL----LGSFAD--------N-EL-------SPECLDGAQHF----LKDDGVSIPGEYTSFLAPISSSKLYNE 483 (637)
T ss_dssp CCC----CBTTBG--------G-GC-------HHHHHHHHGGG----EEEEEEEESCEEEEEEEEEECHHHHHH
T ss_pred EEc----Cccccc--------c-cC-------CHHHHHHHHHh----cCCCcEEccccceEEEEEecCHHHHHH
Confidence 753 222111 0 11 12356666666 499999985555554 5566654443
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.51 E-value=7.7e-05 Score=78.46 Aligned_cols=124 Identities=11% Similarity=0.073 Sum_probs=80.9
Q ss_pred CceEEEeccCCChHHHHHHHH---cc---------CCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccc-
Q 016730 179 KERVIDMAAAPGGKTTYIAAL---MK---------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKV- 244 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~---~~---------~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~- 244 (384)
+..|||+|||+|-.+...+.. .+ ...+|+|+|.++.....++.... .|..+ |+++.+|.+++...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 357999999999987543322 22 23499999999987776665554 77765 89999999987431
Q ss_pred --cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc--CCcccc
Q 016730 245 --LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMVTEN 320 (384)
Q Consensus 245 --~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS--i~~~EN 320 (384)
...+++|+|+..-- |.+.- .++..+.|..+-++ |||||.++=+.|+ +.|-+.
T Consensus 489 ~~~~~ekVDIIVSElm----Gsfl~----------------nEL~pe~Ld~v~r~----Lkp~Gi~iP~~~t~ylaPi~~ 544 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL----GSFGD----------------NELSPECLDGVTGF----LKPTTISIPQKYTSYVKPIMS 544 (745)
T ss_dssp HHTTCCCCSEEEECCC----BTTBG----------------GGSHHHHHHTTGGG----SCTTCEEESCEEEEEEEEEEC
T ss_pred ccCCCCcccEEEEecc----ccccc----------------hhccHHHHHHHHHh----CCCCcEEECCccEEEEEEecC
Confidence 01278999998654 32211 01234466666555 5999999844444 446666
Q ss_pred HHHHHHH
Q 016730 321 EAVIDYA 327 (384)
Q Consensus 321 e~vv~~~ 327 (384)
+..-+.+
T Consensus 545 ~~l~~~v 551 (745)
T 3ua3_A 545 THIHQTI 551 (745)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=70.84 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC---C-----ceEEEEecCCCCcccc--cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG---V-----TNTIVCNYDGNELPKV--LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g---~-----~~v~~~~~D~~~~~~~--~~~ 247 (384)
+..+||=+|.|-|+....++.. + ..+|+.+|+|+.-++.+++.+..+. . .++.++..|+..+-.. ...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 4579999999999988777664 3 3689999999999999988653221 1 2378888999876431 123
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE-EeccCC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STCSIM 316 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY-sTCSi~ 316 (384)
++||+|++|++-...+.....|. ..-..++++..+.+.| +|||.+|. +.|-..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a------------~~Lft~eFy~~~~~~L----~p~GVlv~Q~~s~~~ 336 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDS------------TWEFLRLILDLSMKVL----KQDGKYFTQGNCVNL 336 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----C------------HHHHHHHHHHHHHHTE----EEEEEEEEEEEETTC
T ss_pred CceeEEEECCCCCcccCcccCcc------------hHHHHHHHHHHHHHhc----CCCCEEEEecCCCcc
Confidence 68999999975211111000000 1123566777777775 99999986 444433
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00096 Score=56.85 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=48.6
Q ss_pred CCCceEEEeccCCC-hHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE-E
Q 016730 177 QEKERVIDMAAAPG-GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV-L 254 (384)
Q Consensus 177 ~~g~~VLD~cagpG-gkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V-l 254 (384)
.++.+|||+|||+| ..+.+|++.. ...|+|+|+++..+. ++..|..+..... .+.||+| .
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~---------------~v~dDiF~P~~~~-Y~~~DLIYs 95 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG---------------IVRDDITSPRMEI-YRGAALIYS 95 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT---------------EECCCSSSCCHHH-HTTEEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc---------------eEEccCCCCcccc-cCCcCEEEE
Confidence 45679999999999 4777777643 247999999997765 6778887753211 1489999 8
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
+.||
T Consensus 96 irPP 99 (153)
T 2k4m_A 96 IRPP 99 (153)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 8888
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0012 Score=62.53 Aligned_cols=60 Identities=12% Similarity=-0.042 Sum_probs=44.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
.+|+.|||.+||+|..+..++.+ ...++++|+++..++.+++++++..-.....+.+|+.
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~~ 293 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPGFSLEVLDGAT 293 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC--
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhccccchhhCCccc
Confidence 58999999999999877655443 2589999999999999999998764322223344543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.001 Score=64.26 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=56.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceE-EEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEEEc
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLD 256 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V-~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~VllD 256 (384)
.-+|+|++||.||.+..+.+.--+.-.| .|+|+++..++..+.|... . +.+.|.+++... .....+|+|+..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~gg 83 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFMS 83 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEec
Confidence 4589999999999887765531011246 7999999999999998632 1 456888876421 111369999999
Q ss_pred CCCCCC
Q 016730 257 APCSGT 262 (384)
Q Consensus 257 aPCSg~ 262 (384)
|||.+.
T Consensus 84 pPCQ~f 89 (327)
T 3qv2_A 84 PPCQPY 89 (327)
T ss_dssp CCCTTC
T ss_pred CCccCc
Confidence 999988
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0029 Score=62.86 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=53.0
Q ss_pred hcCCCCCceEEEeccCCChHHHHHH-HHccCCceEEEEeCCHHHHHHHHHHHHH---cCC-ceEEEEec
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHR---MGV-TNTIVCNY 236 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la-~~~~~~g~V~a~D~~~~rl~~l~~n~~r---~g~-~~v~~~~~ 236 (384)
++.+++|+.|+|+||..|..|..++ ...++.++|+|+|.++...+.+++|++. .+. .++.+++.
T Consensus 221 i~~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 221 LLRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp SCCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred ccccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 3456789999999999999999888 4554458999999999999999999998 346 77777653
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0032 Score=60.09 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=80.6
Q ss_pred CCceEEEeccCCChHHHHHHH---HccCCc--eEEEEeCCHH--------HHHHHHH-HHHHcC---Cc--eEEEEecCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAA---LMKNTG--LIYANEMKAS--------RLKSLTA-NLHRMG---VT--NTIVCNYDG 238 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~---~~~~~g--~V~a~D~~~~--------rl~~l~~-n~~r~g---~~--~v~~~~~D~ 238 (384)
+.-+|||+|-|+|--++...+ ...... ..+++|..+- -+..+.+ .++... -. ...+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 335799999999986543322 223333 4577775321 1122222 222221 11 245667888
Q ss_pred CCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 239 ~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
...-..+....||.|++|+= ..+++|++. + .+++....+++ +|||+++--||+
T Consensus 176 ~~~l~~l~~~~~Da~flDgF-----sP~kNPeLW---s-----------~e~f~~l~~~~----~pgg~laTYtaa---- 228 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAF-----SPYKNPELW---T-----------LDFLSLIKERI----DEKGYWVSYSSS---- 228 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCS-----CTTTSGGGG---S-----------HHHHHHHHTTE----EEEEEEEESCCC----
T ss_pred HHHHhhhcccceeEEEeCCC-----CcccCcccC---C-----------HHHHHHHHHHh----CCCcEEEEEeCc----
Confidence 76533343457999999961 125788863 3 34777777775 999999854444
Q ss_pred ccHHHHHHHHhcCCCEEeec
Q 016730 319 ENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 319 ENe~vv~~~l~~~~~~l~~~ 338 (384)
..|...|+..||++...
T Consensus 229 ---g~VRR~L~~aGF~V~k~ 245 (308)
T 3vyw_A 229 ---LSVRKSLLTLGFKVGSS 245 (308)
T ss_dssp ---HHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHHCCCEEEec
Confidence 68899999999988764
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0011 Score=64.27 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=58.4
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~VllDaP 258 (384)
-+|+|+|||.||.+..+.+.--+.-.|.|+|+++..++..+.|.. ...+.+.|..++... .....+|+++..||
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence 379999999999888766541111358899999999999988863 223456787766321 11136999999999
Q ss_pred CCCCCcCC
Q 016730 259 CSGTGVIS 266 (384)
Q Consensus 259 CSg~G~~~ 266 (384)
|.+.-...
T Consensus 79 CQ~fS~ag 86 (333)
T 4h0n_A 79 CQPFTRNG 86 (333)
T ss_dssp CCCSEETT
T ss_pred Ccchhhhh
Confidence 98775544
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0011 Score=63.08 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCce-EEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-c-CCCCCCEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGL-IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-L-GLNTVDRV 253 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~-~~~~fD~V 253 (384)
+.+-+|+|++||.||.+..+.+. +-... |+++|+++..++..+.|.. +..+...|..++... . ....+|+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcccCCcCEE
Confidence 35678999999999988776654 11112 6999999999998887742 334567888876421 1 11479999
Q ss_pred EEcCCCCCCCcCC
Q 016730 254 LLDAPCSGTGVIS 266 (384)
Q Consensus 254 llDaPCSg~G~~~ 266 (384)
+..|||.+.-+..
T Consensus 88 ~ggpPCQ~fS~ag 100 (295)
T 2qrv_A 88 IGGSPCNDLSIVN 100 (295)
T ss_dssp EECCCCGGGBTTC
T ss_pred EecCCCccccccC
Confidence 9999997765543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0032 Score=61.36 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=60.7
Q ss_pred ccceEEEeCCcC-cchhhhcCCCC------CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 016730 156 MAGFYMLQSASS-FLPVMALAPQE------KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (384)
Q Consensus 156 ~~G~~~~Qd~ss-~l~~~~L~~~~------g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~ 228 (384)
.-|.-.+-|+.- .-.+..+++.+ ++.|||+|.|+|..|..|++.... .+|+|+|+|+.-+..+++.+ ..
T Consensus 29 ~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~---~~ 104 (353)
T 1i4w_A 29 FYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF---EG 104 (353)
T ss_dssp GGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT---TT
T ss_pred CCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhc---cC
Confidence 344444445432 22445555553 689999999999999999986432 57999999999888888776 23
Q ss_pred ceEEEEecCCCCcc
Q 016730 229 TNTIVCNYDGNELP 242 (384)
Q Consensus 229 ~~v~~~~~D~~~~~ 242 (384)
.++.++++|+..+.
T Consensus 105 ~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 105 SPLQILKRDPYDWS 118 (353)
T ss_dssp SSCEEECSCTTCHH
T ss_pred CCEEEEECCccchh
Confidence 68999999997653
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0075 Score=57.54 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=59.3
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
.+|||++||.||.+.-+-+. +--.|.|+|+++..++..+.|. + ..++.+|.+++.... ...+|+|+.-|||
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~---~---~~~~~~DI~~i~~~~-~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S---AKLIKGDISKISSDE-FPKCDGIIGGPPS 71 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC---C---SEEEESCGGGCCGGG-SCCCSEEECCCCG
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C---CCcccCChhhCCHhh-CCcccEEEecCCC
Confidence 37999999999988766543 2236889999999999998874 2 245678988774321 2579999999999
Q ss_pred CCCCcCCC
Q 016730 260 SGTGVISK 267 (384)
Q Consensus 260 Sg~G~~~r 267 (384)
.+.-+..+
T Consensus 72 Q~fS~ag~ 79 (331)
T 3ubt_Y 72 QSWSEGGS 79 (331)
T ss_dssp GGTEETTE
T ss_pred CCcCCCCC
Confidence 77765543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0044 Score=57.50 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~ 228 (384)
..+|+.|||.+||+|..+.... .++ ..++++|+++..++.++++++..++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~-~~g--r~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAK-KLG--RNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHH-HTT--CEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCCCHHHHHHH-HcC--CeEEEEeCCHHHHHHHHHHHHhccC
Confidence 3689999999999998655433 332 5899999999999999999987664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.024 Score=55.58 Aligned_cols=129 Identities=10% Similarity=0.066 Sum_probs=72.5
Q ss_pred CceEEEeccCCChHHHHHHHHc--------------cCCceEEEEeCCHHHHHHHHHHHHHcC-----------C-ceEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALM--------------KNTGLIYANEMKASRLKSLTANLHRMG-----------V-TNTI 232 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~D~~~~rl~~l~~n~~r~g-----------~-~~v~ 232 (384)
..+|+|+|||+|..|+.+...+ .+.-.|+.+|+-..-...+=..+.... . .+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5889999999999999874322 134578999987776666655544321 0 0111
Q ss_pred EEecCCCCc-ccccCCCCCCEEEEcCCCCCCCcCCCCchhh--------------cc-CCHHHHHHH-----HHHHHHHH
Q 016730 233 VCNYDGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESVK--------------TS-KSLEDIQKC-----SYLQKQLI 291 (384)
Q Consensus 233 ~~~~D~~~~-~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~--------------~~-~~~~~i~~l-----~~~Q~~iL 291 (384)
++.+.+..+ ...++.++||.|+.. .+.--+.+.|+.. .. -++. +.+. .+--..+|
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss---~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~Qf~~D~~~fL 208 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSA---FSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK-TTTAYKRQFQADLAEFL 208 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEE---SCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH-HHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEec---ceeeeeccCchhhhccccccccCCceEeCCCCHH-HHHHHHHHHHHHHHHHH
Confidence 222222221 233455889999873 3344444444211 11 1233 3222 22223346
Q ss_pred HHHHHchhccCCCCcEEEEEeccC
Q 016730 292 LAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 292 ~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+.-.+. |+|||++|.++..-
T Consensus 209 ~~ra~e----L~pGG~mvl~~~gr 228 (374)
T 3b5i_A 209 RARAAE----VKRGGAMFLVCLGR 228 (374)
T ss_dssp HHHHHH----EEEEEEEEEEEEEC
T ss_pred HHHHHH----hCCCCEEEEEEecC
Confidence 665665 49999999988754
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0066 Score=61.57 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=56.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------------- 244 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~------------- 244 (384)
..-+|+|+|||.||.+.-+.+. +--.|.|+|+++..++..+.|... .....+++.|...+...
T Consensus 87 ~~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEH 162 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred ccceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhh
Confidence 3468999999999988766543 223589999999999998887521 11233456777655310
Q ss_pred --cCCCCCCEEEEcCCCCCCCcCC
Q 016730 245 --LGLNTVDRVLLDAPCSGTGVIS 266 (384)
Q Consensus 245 --~~~~~fD~VllDaPCSg~G~~~ 266 (384)
.....+|+|+.-|||-+.-+..
T Consensus 163 i~~~~~~~Dvl~gGpPCQ~FS~AG 186 (482)
T 3me5_A 163 IRQHIPEHDVLLAGFPCQPFSLAG 186 (482)
T ss_dssp HHHHSCCCSEEEEECCCCCC----
T ss_pred hhhcCCCCCEEEecCCCcchhhhC
Confidence 0114699999999998776554
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0032 Score=66.50 Aligned_cols=130 Identities=17% Similarity=0.094 Sum_probs=80.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-----------CCceEEEEeCCHHHHHHHHH--------------HHHHc-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-----------NTGLIYANEMKASRLKSLTA--------------NLHRM-----G 227 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-----------~~g~V~a~D~~~~rl~~l~~--------------n~~r~-----g 227 (384)
+.-+|+|+|-|+|.-.+.+.+... ..-+++++|..+-..+.+++ .++.+ |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 456899999999998887776531 11468999994433333332 12221 2
Q ss_pred C-----c----eEEEEecCCCCcccccC---CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 016730 228 V-----T----NTIVCNYDGNELPKVLG---LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (384)
Q Consensus 228 ~-----~----~v~~~~~D~~~~~~~~~---~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~ 295 (384)
+ . .+.+..+|+......+. ...||.|++|+.. ..++|++ |+. +++....
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~-----p~~np~~---w~~-----------~~~~~l~ 198 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA-----PAKNPDM---WNE-----------QLFNAMA 198 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC-----C--CCTT---CSH-----------HHHHHHH
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC-----CCCChhh---hhH-----------HHHHHHH
Confidence 1 1 34566678765433221 2679999999852 2467764 233 3555556
Q ss_pred HchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 296 ~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
+++ +|||++...||. ..|...|.+.++.+..
T Consensus 199 ~~~----~~g~~~~t~~~~-------~~vr~~l~~aGf~~~~ 229 (689)
T 3pvc_A 199 RMT----RPGGTFSTFTAA-------GFVRRGLQQAGFNVTK 229 (689)
T ss_dssp HHE----EEEEEEEESCCC-------HHHHHHHHHTTCEEEE
T ss_pred HHh----CCCCEEEeccCc-------HHHHHHHHhCCeEEEe
Confidence 664 999998766665 4677777777876654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.013 Score=56.49 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=61.4
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC---CCCc----cccc
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD---GNEL----PKVL 245 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D---~~~~----~~~~ 245 (384)
..+++|++||-.|||+ |..+..++..++ ...|+++|.+++|++.++ .+|.+.+ +..+ ..++ ....
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAK----EIGADLV--LQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCSEE--EECSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCEE--EcCcccccchHHHHHHHHh
Confidence 3678999999998754 444445555543 238999999999987764 5787643 2222 0111 1111
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
. ..||+|+- |+|.. ..+..+++.| ++||+++...
T Consensus 240 ~-~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~G 273 (356)
T 1pl8_A 240 G-CKPEVTIE---CTGAE-------------------------ASIQAGIYAT----RSGGTLVLVG 273 (356)
T ss_dssp T-SCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECS
T ss_pred C-CCCCEEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEEe
Confidence 2 46999975 33321 1346677775 9999998643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.023 Score=55.27 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=62.1
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc------cC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------LG 246 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~------~~ 246 (384)
..+++|++||=.|||+ |..+..+|..++ ...|+++|.++++++.++ .+|.+.+ +.....++... ..
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAE----EVGATAT--VDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHH----HHTCSEE--ECTTSSCHHHHHHSTTSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HcCCCEE--ECCCCcCHHHHHHhhhhcc
Confidence 4678999999988754 334445555543 238999999999987665 4787643 22222222110 11
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+.||+|+- |+|.+ ..+..++++| ++||+++..
T Consensus 251 ~gg~Dvvid---~~G~~-------------------------~~~~~~~~~l----~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIE---CAGVA-------------------------ETVKQSTRLA----KAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEE---CSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred CCCCCEEEE---CCCCH-------------------------HHHHHHHHHh----ccCCEEEEE
Confidence 247999875 44432 2456777876 999998864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.036 Score=52.92 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD 251 (384)
.+++|++||-.|||+ |..+..++..++ .+|+++|.++++++.+ +++|.+.+ +..+..++.... ..+.+|
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~----~~lGa~~~--i~~~~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLA----RRLGAEVA--VNARDTDPAAWLQKEIGGAH 234 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHH----HHTTCSEE--EETTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHH----HHcCCCEE--EeCCCcCHHHHHHHhCCCCC
Confidence 578999999998865 556666666653 4899999999998866 45787643 233222221111 013689
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.|+... |.+ ..+..+++.| ++||+++..
T Consensus 235 ~vid~~---g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 262 (340)
T 3s2e_A 235 GVLVTA---VSP-------------------------KAFSQAIGMV----RRGGTIALN 262 (340)
T ss_dssp EEEESS---CCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred EEEEeC---CCH-------------------------HHHHHHHHHh----ccCCEEEEe
Confidence 987633 221 2456777876 999999864
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.021 Score=54.78 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=60.6
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+++|++||-.|||+ |..+..++..++ .+|+++|.++++++.++ ++|.+.+. .|... .. ..||+|
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~v~---~~~~~----~~-~~~D~v 238 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDAL----SMGVKHFY---TDPKQ----CK-EELDFI 238 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHH----HTTCSEEE---SSGGG----CC-SCEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----hcCCCeec---CCHHH----Hh-cCCCEE
Confidence 578999999988754 444455555543 48999999999988664 58887544 33221 21 379998
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+- |+|.. ..+..+++.| ++||+++..
T Consensus 239 id---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 264 (348)
T 3two_A 239 IS---TIPTH-------------------------YDLKDYLKLL----TYNGDLALV 264 (348)
T ss_dssp EE---CCCSC-------------------------CCHHHHHTTE----EEEEEEEEC
T ss_pred EE---CCCcH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 74 33332 1245677775 999998864
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0082 Score=58.98 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=47.8
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-c----cccCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-P----KVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-~----~~~~~~ 248 (384)
++++|++||-.|||+ |..+..+|..++ ..+|+++|.+++|++.++ ++|.. ++..+..++ . ....+.
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~---~i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGFE---TIDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTCE---EEETTSSSCHHHHHHHHHSSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCc---EEcCCCcchHHHHHHHHhCCC
Confidence 578999999999765 555666666653 248999999999987764 57873 233322222 1 111223
Q ss_pred CCCEEEE
Q 016730 249 TVDRVLL 255 (384)
Q Consensus 249 ~fD~Vll 255 (384)
.||+|+-
T Consensus 254 g~Dvvid 260 (398)
T 2dph_A 254 EVDCGVD 260 (398)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 6999875
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.011 Score=58.04 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.+++|++||-.|||+ |..+..+|..++ ...|+++|.+++|++.++ ++|.+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~----~lGa~ 232 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGFE 232 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 578999999988654 444555565553 237999999999988774 47874
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.03 Score=53.80 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=61.0
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
..+++|++||=.|||+ |..+..++..++ ...|+++|.+++|++.++ ++|.+.+ +..+..++. ....+.
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIAL----EYGATDI--INYKNGDIVEQILKATDGK 234 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHH----HHTCCEE--ECGGGSCHHHHHHHHTTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH----HhCCceE--EcCCCcCHHHHHHHHcCCC
Confidence 3578999999998644 333444444432 237999999999987764 4787643 232222221 112234
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.||+|+- |+|.. ..+..+++.| ++||+++..
T Consensus 235 g~D~v~d---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 265 (352)
T 3fpc_A 235 GVDKVVI---AGGDV-------------------------HTFAQAVKMI----KPGSDIGNV 265 (352)
T ss_dssp CEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEEC
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEe
Confidence 7999974 33331 1456777876 999998854
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.087 Score=51.78 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=70.3
Q ss_pred CceEEEeccCCChHHHHHHHHc----------------cCCceEEEEeCCHHHHHHH-------HHHH-HHcCC-ceEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALM----------------KNTGLIYANEMKASRLKSL-------TANL-HRMGV-TNTIV 233 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~----------------~~~g~V~a~D~~~~rl~~l-------~~n~-~r~g~-~~v~~ 233 (384)
..+|+|+|||+|..|+.+.+.+ .+.-.|+.+|+-..-...+ .+.+ +..|- .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 4789999999999999877651 1235789999862222111 1111 22332 12244
Q ss_pred EecCCCCc-ccccCCCCCCEEEEcCCCCCCCcCCCCchh--------------hccC-CHHHHH-----HHHHHHHHHHH
Q 016730 234 CNYDGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESV--------------KTSK-SLEDIQ-----KCSYLQKQLIL 292 (384)
Q Consensus 234 ~~~D~~~~-~~~~~~~~fD~VllDaPCSg~G~~~r~p~~--------------~~~~-~~~~i~-----~l~~~Q~~iL~ 292 (384)
+.+....+ ...++.++||.|.... +.--+.+.|+. .... ++..+. +..+--..+|+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~---aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCY---CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEES---CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecc---eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 4445568999998743 22223333311 1111 112221 12222233455
Q ss_pred HHHHchhccCCCCcEEEEEeccCC
Q 016730 293 AAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 293 ~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
.-.+-| +|||++|.++..-.
T Consensus 210 ~Ra~eL----~pGG~mvl~~~gr~ 229 (384)
T 2efj_A 210 IHSEEL----ISRGRMLLTFICKE 229 (384)
T ss_dssp HHHHHE----EEEEEEEEEEECCC
T ss_pred HHHHHh----ccCCeEEEEEecCC
Confidence 555654 99999999887553
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.037 Score=53.56 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
.++++|++||-.|||+ |..+..++..++ ...|+++|.+++|++.++ ++|.+.+ +..+..++. .... +
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~~~~~-g 257 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATHV--INSKTQDPVAAIKEITD-G 257 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTT-S
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCCEE--ecCCccCHHHHHHHhcC-C
Confidence 3578999999998765 445556666553 237999999999988764 4687543 233222221 1112 3
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.||.|+- |+|. ...+..+++.| ++||+++..
T Consensus 258 g~D~vid---~~g~-------------------------~~~~~~~~~~l----~~~G~iv~~ 288 (371)
T 1f8f_A 258 GVNFALE---STGS-------------------------PEILKQGVDAL----GILGKIAVV 288 (371)
T ss_dssp CEEEEEE---CSCC-------------------------HHHHHHHHHTE----EEEEEEEEC
T ss_pred CCcEEEE---CCCC-------------------------HHHHHHHHHHH----hcCCEEEEe
Confidence 7999875 3222 12456778886 999998864
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.038 Score=53.57 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=61.0
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCccc---ccCC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPK---VLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~--~~~~~---~~~~ 247 (384)
..+++|++||=.|||+ |..+..+|..++ ...|+++|.+++|++.++ ++|.+.+ +..+. .++.. ....
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAI----ELGATEC--LNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HTTCSEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCcEE--EecccccchHHHHHHHHhC
Confidence 3578999999998654 333445555543 237999999999988764 5788643 22221 11211 0112
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYs 311 (384)
+.||+|+- |+|.. ..+..+++.+ ++| |+++..
T Consensus 260 gg~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~~G~iv~~ 292 (373)
T 1p0f_A 260 GGVDYAVE---CAGRI-------------------------ETMMNALQST----YCGSGVTVVL 292 (373)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCCEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCCEEEEE
Confidence 37999975 33321 2456778886 999 998854
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.03 Score=54.41 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=62.3
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC--CCCccc---ccCC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD--GNELPK---VLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D--~~~~~~---~~~~ 247 (384)
..+++|++||=.|||+ |..+..++..++ ..+|+++|.+++|++.++ ++|.+.+ +... ...+.. ....
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAK----KFGVNEF--VNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHH----TTTCCEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCcEE--EccccCchhHHHHHHHhcC
Confidence 4578999999998754 444445555543 247999999999988664 5787643 2222 112111 1112
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYsT 312 (384)
+.||+|+- |+|.. ..+..+++.+ ++| |+++...
T Consensus 262 gg~D~vid---~~g~~-------------------------~~~~~~~~~l----~~g~G~iv~~G 295 (378)
T 3uko_A 262 GGVDYSFE---CIGNV-------------------------SVMRAALECC----HKGWGTSVIVG 295 (378)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEECS
T ss_pred CCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hccCCEEEEEc
Confidence 37999975 43331 2467788886 996 9988643
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.022 Score=54.54 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=63.2
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc----ccCCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLNT 249 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----~~~~~~ 249 (384)
.+++|++||=.|||+ |..+..++..++ ..+|+++|.+++|++.++ ++|.+.+. ..+. ++.. ...+..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~----~lGa~~~i--~~~~-~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAR----EVGADAAV--KSGA-GAADAIRELTGGQG 239 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHH----HTTCSEEE--ECST-THHHHHHHHHGGGC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEE--cCCC-cHHHHHHHHhCCCC
Confidence 578999999998755 444555666553 368999999999988764 57876543 2222 2211 112247
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|+|+- |+|.. ..+..+++.| ++||+++..
T Consensus 240 ~d~v~d---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~ 269 (345)
T 3jv7_A 240 ATAVFD---FVGAQ-------------------------STIDTAQQVV----AVDGHISVV 269 (345)
T ss_dssp EEEEEE---SSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred CeEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 999875 33321 2467778876 999998864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.085 Score=50.62 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=60.2
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcc----cccC-
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELP----KVLG- 246 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~----~~~~- 246 (384)
.++++|++||-.|||+ |..+..++..++ ..|+++|.++++++.++ .+|.+.+ +..+- .++. ....
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~~--~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAK----NCGADVT--LVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSEE--EECCTTTSCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCEE--EcCcccccHHHHHHHHhcc
Confidence 3678999999998643 333444555443 36999999999988764 5787643 22221 2221 1111
Q ss_pred --CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 247 --LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 247 --~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+..||+|+- |+|.. ..+..+++.| ++||+++..
T Consensus 236 ~~g~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 270 (352)
T 1e3j_A 236 AIGDLPNVTID---CSGNE-------------------------KCITIGINIT----RTGGTLMLV 270 (352)
T ss_dssp HSSSCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEEC
T ss_pred ccCCCCCEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 257999975 22221 1356677775 999998864
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.035 Score=53.85 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=60.8
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCcc----cccC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELP----KVLG 246 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~--~~~~----~~~~ 246 (384)
.++++|++||-.|+|+ |..+..++..++ ...|+++|.++++++.++ ++|.+.+ +.... .++. ....
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAK----VFGATDF--VNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCCEE--ECGGGCSSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HhCCceE--EeccccchhHHHHHHHHhC
Confidence 3578999999998643 333444555442 237999999999988764 5787643 22211 1121 1112
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEEe
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYST 312 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYsT 312 (384)
+.||+|+- |+|.+ ..+..+++.+ ++| |++|...
T Consensus 261 -~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~~G~iv~~G 294 (374)
T 1cdo_A 261 -GGVDFSLE---CVGNV-------------------------GVMRNALESC----LKGWGVSVLVG 294 (374)
T ss_dssp -SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEECS
T ss_pred -CCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCcEEEEEc
Confidence 37999975 33321 2456778886 999 9988643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.049 Score=52.69 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=60.4
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCccc---ccCC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPK---VLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~--~~~~~---~~~~ 247 (384)
.++++|++||-.|||+ |..+..++..++ ...|+++|.++++++.++ ++|.+.+. .... .++.. ....
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~vi--~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATECI--NPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSEEE--CGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCceEe--ccccccccHHHHHHHHhC
Confidence 3578999999998643 333444555443 237999999999988764 57876432 2211 11111 0112
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYs 311 (384)
+.||+|+- |+|. ...+..+++++ ++| |+++..
T Consensus 259 ~g~D~vid---~~g~-------------------------~~~~~~~~~~l----~~~~G~iv~~ 291 (373)
T 2fzw_A 259 GGVDYSFE---CIGN-------------------------VKVMRAALEAC----HKGWGVSVVV 291 (373)
T ss_dssp SCBSEEEE---CSCC-------------------------HHHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCCEEEE---CCCc-------------------------HHHHHHHHHhh----ccCCcEEEEE
Confidence 37999875 3332 12456778876 999 998864
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.11 Score=47.54 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCceEEEeccCCC-hHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.++|=.||+.+ |.+..++..+ .....|+.+|.+++.++.+.+.++..+-..+.++..|..+..... ..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4788888887653 5666666544 334589999999999999998888887666777788988742210 12
Q ss_pred CCCCEEEEcCCCC
Q 016730 248 NTVDRVLLDAPCS 260 (384)
Q Consensus 248 ~~fD~VllDaPCS 260 (384)
++.|.++.++...
T Consensus 85 G~iD~lvnnAg~~ 97 (256)
T 4fs3_A 85 GNIDGVYHSIAFA 97 (256)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEeccccc
Confidence 6899999877543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.042 Score=53.29 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=60.7
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCcc----cccC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELP----KVLG 246 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~--~~~~----~~~~ 246 (384)
..+++|++||=.|||+ |..+..+|..++ ...|+++|.++++++.++ ++|.+.+ +..+. .++. ....
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAK----ALGATDC--LNPRELDKPVQDVITELTA 263 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSEE--ECGGGCSSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCcEE--EccccccchHHHHHHHHhC
Confidence 3578999999998643 333444555442 237999999999987764 5787643 22211 1111 1112
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEEe
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYST 312 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYsT 312 (384)
+.||+|+- |+|. ...+..+++++ ++| |+++...
T Consensus 264 -~g~Dvvid---~~G~-------------------------~~~~~~~~~~l----~~~~G~iv~~G 297 (376)
T 1e3i_A 264 -GGVDYSLD---CAGT-------------------------AQTLKAAVDCT----VLGWGSCTVVG 297 (376)
T ss_dssp -SCBSEEEE---SSCC-------------------------HHHHHHHHHTB----CTTTCEEEECC
T ss_pred -CCccEEEE---CCCC-------------------------HHHHHHHHHHh----hcCCCEEEEEC
Confidence 37999974 3332 12456778886 999 9998643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.05 Score=52.70 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=57.7
Q ss_pred CCceEEEec-cCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCCCCCE
Q 016730 178 EKERVIDMA-AAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~c-agp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~~fD~ 252 (384)
+|++||=.| +|+ |..+..++..+. ..+|+++|.+++|++.++ ++|.+.+. .... ++.. ...+..+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~----~lGad~vi--~~~~-~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVK----SLGAHHVI--DHSK-PLAAEVAALGLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHH----HTTCSEEE--CTTS-CHHHHHHTTCSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHH----HcCCCEEE--eCCC-CHHHHHHHhcCCCceE
Confidence 799998766 222 334445555433 368999999999988774 47876432 2211 1111 112357998
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|+- |+|.+ ..+..+++.| ++||+++..
T Consensus 243 vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFS---TTHTD-------------------------KHAAEIADLI----APQGRFCLI 269 (363)
T ss_dssp EEE---CSCHH-------------------------HHHHHHHHHS----CTTCEEEEC
T ss_pred EEE---CCCch-------------------------hhHHHHHHHh----cCCCEEEEE
Confidence 865 33321 2456777875 999999864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.98 E-value=0.054 Score=52.47 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=60.1
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCccc---ccCC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPK---VLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~--~~~~~---~~~~ 247 (384)
.++++|++||-.|||+ |..+..++..++ ...|+++|.++++++.++ ++|.+.+ +..+. .++.. ....
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAK----EVGATEC--VNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCceE--ecccccchhHHHHHHHHhC
Confidence 3578999999998644 333444555442 237999999999988764 5787643 22211 11111 0112
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYs 311 (384)
+.||.|+- |+|.. ..+..+++.+ ++| |+++..
T Consensus 260 ~g~D~vid---~~g~~-------------------------~~~~~~~~~l----~~~~G~iv~~ 292 (374)
T 2jhf_A 260 GGVDFSFE---VIGRL-------------------------DTMVTALSCC----QEAYGVSVIV 292 (374)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHHB----CTTTCEEEEC
T ss_pred CCCcEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCcEEEEe
Confidence 37999875 33321 2456777875 999 998864
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.067 Score=51.65 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=61.5
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
..+++|++||=.|+|+ |..+..++..++ .+|+++|.++++++.++ ++|.+.+. ..+..++. ....+.
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~vi--~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAF----ALGADHGI--NRLEEDWVERVYALTGDR 256 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HHTCSEEE--ETTTSCHHHHHHHHHTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHH----HcCCCEEE--cCCcccHHHHHHHHhCCC
Confidence 3578999999998655 444445555543 48999999999988764 57876432 23222221 112234
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.||+|+- |+|.. .+..+++.+ ++||+++...
T Consensus 257 g~D~vid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~G 287 (363)
T 3uog_A 257 GADHILE---IAGGA--------------------------GLGQSLKAV----APDGRISVIG 287 (363)
T ss_dssp CEEEEEE---ETTSS--------------------------CHHHHHHHE----EEEEEEEEEC
T ss_pred CceEEEE---CCChH--------------------------HHHHHHHHh----hcCCEEEEEe
Confidence 7998875 33311 245667775 9999988653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.019 Score=54.19 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=55.4
Q ss_pred ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 229 ~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
..+.++++|+.+....+.+++||.|++|||.-...-....+... ....+-........+++..+.++| ||||.+
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~--~~~~~~~~~l~~l~~~~~~~~rvL----k~~G~l 93 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQL--GHIEDYEAFLDELDRVWREVFRLL----VPGGRL 93 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CC--HHHHHHHHHHHHHHHHHHHHHHHE----EEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhh--cccccHHHHHHHHHHHHHHHHHHc----CCCcEE
Confidence 35778899988754334457899999999985432221111100 001111222233456777777775 999999
Q ss_pred EEEeccCCcc----------ccHHHHHHHHhcCCCEEee
Q 016730 309 VYSTCSIMVT----------ENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 309 vYsTCSi~~~----------ENe~vv~~~l~~~~~~l~~ 337 (384)
+......... ..-..+..+++..++.+..
T Consensus 94 ~i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 94 VIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEEECCEEEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 7765421100 0112344556667776654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.034 Score=54.08 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=45.1
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+++|++||-.|+|+ |..+..+|..++ ..|+++|.++++++.++ ++|.+.+ +..+..+...... ..||+|
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~-~g~Dvv 261 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAK----ALGADEV--VNSRNADEMAAHL-KSFDFI 261 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHH----HHTCSEE--EETTCHHHHHTTT-TCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCcEE--eccccHHHHHHhh-cCCCEE
Confidence 578999999998754 444445555543 47999999999988765 3787643 2222111111111 479998
Q ss_pred EE
Q 016730 254 LL 255 (384)
Q Consensus 254 ll 255 (384)
+-
T Consensus 262 id 263 (369)
T 1uuf_A 262 LN 263 (369)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.02 Score=55.83 Aligned_cols=129 Identities=13% Similarity=0.144 Sum_probs=72.9
Q ss_pred CceEEEeccCCChHHHHHHHH---------------ccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCc-
Q 016730 179 KERVIDMAAAPGGKTTYIAAL---------------MKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNEL- 241 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~---------------~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~- 241 (384)
.-+|+|+||++|..|+.+.+. -.+.-.|+.+|+-..-...+-+++..+.- .+..++.+....+
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 367999999999988764443 12235799999988888887766643210 0223444444332
Q ss_pred ccccCCCCCCEEEEc--------CCCCCC---CcC--C--CCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 242 PKVLGLNTVDRVLLD--------APCSGT---GVI--S--KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 242 ~~~~~~~~fD~VllD--------aPCSg~---G~~--~--r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
...++.++||.|... +|+.-. |-+ . ..|.+.-. -..+..+.-..+|+.-.+-| +|||
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~a----y~~Qf~~D~~~FL~~Ra~EL----~pGG 203 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNA----YYKQFQEDHALFLRCRAQEV----VPGG 203 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCC----SHHHHHHHHHHHHHHHHHHB----CTTC
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHh----cCCc
Confidence 344556889999764 333211 100 0 01111111 11223333344566666664 9999
Q ss_pred EEEEEeccC
Q 016730 307 YIVYSTCSI 315 (384)
Q Consensus 307 ~lvYsTCSi 315 (384)
++|.++..-
T Consensus 204 ~mvl~~~gr 212 (359)
T 1m6e_X 204 RMVLTILGR 212 (359)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEecC
Confidence 999987644
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.14 Score=48.82 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=61.0
Q ss_pred CCCCCceEEEeccCCChH-HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc----ccCCCC
Q 016730 175 APQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGLNT 249 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgk-t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----~~~~~~ 249 (384)
.+++|++||=.|||+.|. +..++..++ ...++++|.+++|++.++ ++|.+.+ ++..-.+... ......
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~----~lGa~~~--i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAK----SFGAMQT--FNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHGGGCS
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHH----HcCCeEE--EeCCCCCHHHHHHhhcccCC
Confidence 578999999998876553 334444443 357889999999987664 5887643 2332222211 112256
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|.|+- |+|.+ ..+..+++++ ++||+++..
T Consensus 230 ~d~v~d---~~G~~-------------------------~~~~~~~~~l----~~~G~~v~~ 259 (346)
T 4a2c_A 230 NQLILE---TAGVP-------------------------QTVELAVEIA----GPHAQLALV 259 (346)
T ss_dssp SEEEEE---CSCSH-------------------------HHHHHHHHHC----CTTCEEEEC
T ss_pred cccccc---ccccc-------------------------chhhhhhhee----cCCeEEEEE
Confidence 787765 33332 2456677775 999998864
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.12 Score=49.79 Aligned_cols=101 Identities=22% Similarity=0.176 Sum_probs=60.3
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC---Cc----cccc
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN---EL----PKVL 245 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~---~~----~~~~ 245 (384)
..+++|++||=.|||+ |..+..+|..++ ...|+++|.++++++.+++. + ..+.....|.. ++ ....
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l----~-~~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI----C-PEVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH----C-TTCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh----c-hhcccccccccchHHHHHHHHHHh
Confidence 3678999999988644 334445555443 23499999999999888753 2 22222222211 11 1112
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+..||+|+- |+|.. ..+..+++.| ++||+++...
T Consensus 249 ~g~g~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~G 283 (363)
T 3m6i_A 249 GGIEPAVALE---CTGVE-------------------------SSIAAAIWAV----KFGGKVFVIG 283 (363)
T ss_dssp SSCCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECC
T ss_pred CCCCCCEEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEEc
Confidence 2457999975 33321 2456777775 9999998653
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.061 Score=52.32 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=59.2
Q ss_pred C-CCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC---CCCc----cccc
Q 016730 175 A-PQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD---GNEL----PKVL 245 (384)
Q Consensus 175 ~-~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D---~~~~----~~~~ 245 (384)
+ +++|++||-.|+|+ |..+..+|..++ ..+|+++|.++++++.++ ++|.+.+ +..+ ..++ ....
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 191 PESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADLT--LNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHH----HcCCcEE--EeccccCcchHHHHHHHHh
Confidence 5 78999999999543 223334444432 138999999999988765 5787643 2222 1111 1111
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+..||+|+- |+|.+ ..+..+++.| ++||+++..
T Consensus 264 ~g~g~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 297 (380)
T 1vj0_A 264 HGRGADFILE---ATGDS-------------------------RALLEGSELL----RRGGFYSVA 297 (380)
T ss_dssp TTSCEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEEC
T ss_pred CCCCCcEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 2246999875 33321 1356677776 999998754
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.13 Score=48.92 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=62.1
Q ss_pred CCCCCceEEEeccCCChH-HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCCCC
Q 016730 175 APQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLNT 249 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgk-t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~~~ 249 (384)
.+++|++||=.|||++|- +..++..+. ..+|+++|.+++|++.+ +++|.+.+. +....++ .....+..
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~----~~~Ga~~~i--~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLA----KKIGADVTI--NSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHH----HHTTCSEEE--EC-CCCHHHHHHHHTTSSC
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhh----hhcCCeEEE--eCCCCCHHHHhhhhcCCCC
Confidence 578999999999987653 334444443 36899999999997655 457876432 2222222 11123356
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|.++.++. .+ ..+..+++.+ ++||+++..
T Consensus 233 ~d~~~~~~~---~~-------------------------~~~~~~~~~l----~~~G~~v~~ 262 (348)
T 4eez_A 233 VQSAIVCAV---AR-------------------------IAFEQAVASL----KPMGKMVAV 262 (348)
T ss_dssp EEEEEECCS---CH-------------------------HHHHHHHHTE----EEEEEEEEC
T ss_pred ceEEEEecc---Cc-------------------------chhheeheee----cCCceEEEE
Confidence 888877543 21 2456677776 999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.073 Score=50.87 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=56.3
Q ss_pred eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE
Q 016730 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (384)
Q Consensus 230 ~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv 309 (384)
...++++|+......+..++||.|++|||.....- . .+ ...............|..+.++| ||||.++
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~-~-----~y--~~~~~~~~~~~l~~~l~~~~rvL----k~~G~i~ 81 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRK-K-----EY--GNLEQHEYVDWFLSFAKVVNKKL----KPDGSFV 81 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCS-C-----SS--CSCHHHHHHHHHHHHHHHHHHHE----EEEEEEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcc-c-----cc--CCcCHHHHHHHHHHHHHHHHHHC----cCCcEEE
Confidence 46778899876433344578999999999843210 0 01 11122334444556777777775 9999998
Q ss_pred EEeccCCccc-------cHHHHHHHHhcCCCEEee
Q 016730 310 YSTCSIMVTE-------NEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 310 YsTCSi~~~E-------Ne~vv~~~l~~~~~~l~~ 337 (384)
........+. +-..+..+++..++.+..
T Consensus 82 i~~~d~~~~g~~~~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 82 VDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp EEECCCEETTEEEECCHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCEecCCCcccccchHHHHHHHHHhCCCEEEE
Confidence 7654321111 223333455677877654
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.046 Score=54.11 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=35.1
Q ss_pred ceEEEeccCCChHHHHHHHHccCCce----EEEEeCCHHHHHHHHHHHH
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGL----IYANEMKASRLKSLTANLH 224 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~----V~a~D~~~~rl~~l~~n~~ 224 (384)
-+|+|+|||-||.+..+-+.-.+-.. |.|+|+++..++..+.|..
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 48999999999988877654211123 8999999999999888874
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.091 Score=48.77 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=83.2
Q ss_pred CCceEEEeccCCChHHHHHHHHc------cCCceEEEEeC-----CH----------------------HHHHH---HHH
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM------KNTGLIYANEM-----KA----------------------SRLKS---LTA 221 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~------~~~g~V~a~D~-----~~----------------------~rl~~---l~~ 221 (384)
|| .|+++|+.-|+-+..++++. ....+|+++|. .. +.+.. +.+
T Consensus 70 pG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 70 PG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp CS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 56 79999999999888877642 13468999992 21 11222 223
Q ss_pred HHHHcCC--ceEEEEecCCCCc-ccc---cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 016730 222 NLHRMGV--TNTIVCNYDGNEL-PKV---LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (384)
Q Consensus 222 n~~r~g~--~~v~~~~~D~~~~-~~~---~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~ 295 (384)
|.+++|. .++.++.+++.+. +.. .+..+||.|.+|+-- -.-.+..++.++
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~------------------------Y~~t~~~le~~~ 204 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL------------------------YEPTKAVLEAIR 204 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC------------------------HHHHHHHHHHHG
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc------------------------cchHHHHHHHHH
Confidence 3345775 6799999998764 221 223579999999740 011234566677
Q ss_pred HchhccCCCCcEEEEEeccC--CccccHHHHHHHHhcCCCEEeec
Q 016730 296 DMVDANSKSGGYIVYSTCSI--MVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 296 ~~L~~~lkpGG~lvYsTCSi--~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
..| +|||.+|+--... .+.+.+++ +.++.+++.++...
T Consensus 205 p~l----~~GGvIv~DD~~~~~w~G~~~A~-~ef~~~~~~~i~~~ 244 (257)
T 3tos_A 205 PYL----TKGSIVAFDELDNPKWPGENIAM-RKVLGLDHAPLRLL 244 (257)
T ss_dssp GGE----EEEEEEEESSTTCTTCTHHHHHH-HHHTCTTSSCCEEC
T ss_pred HHh----CCCcEEEEcCCCCCCChHHHHHH-HHHHhhCCCeEEEc
Confidence 775 9999999877532 45554444 66777766555443
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.13 Score=56.57 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=55.7
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc------------c-cc
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------------P-KV 244 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~------------~-~~ 244 (384)
.-+++|++||.||.+.-+.+. +- -.|.|+|+++..++..+.|.. +..++..|...+ . ..
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~~~ 612 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRGQR 612 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred CCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhhhh
Confidence 347999999999998877654 21 258899999999998887742 233444443211 0 01
Q ss_pred c-CCCCCCEEEEcCCCCCCCcCCC
Q 016730 245 L-GLNTVDRVLLDAPCSGTGVISK 267 (384)
Q Consensus 245 ~-~~~~fD~VllDaPCSg~G~~~r 267 (384)
+ ..+.+|+|+.-|||.+.-...+
T Consensus 613 lp~~~~vDll~GGpPCQ~FS~ag~ 636 (1002)
T 3swr_A 613 LPQKGDVEMLCGGPPCQGFSGMNR 636 (1002)
T ss_dssp CCCTTTCSEEEECCCCTTCCSSSC
T ss_pred cccCCCeeEEEEcCCCcchhhhCC
Confidence 1 1247999999999987765543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.081 Score=50.67 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=55.1
Q ss_pred CCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCCCCC
Q 016730 178 EKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVD 251 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~~fD 251 (384)
+|++||=.+ |.|+.+. .++...+ .+|++++.++++++.+++ +|.+.+. ..+. ++.. ...+..||
T Consensus 150 ~g~~VlV~g-g~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~vi--~~~~-~~~~~~~~~~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIIN-GAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKK----MGADIVL--NHKE-SLLNQFKTQGIELVD 219 (346)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHH----HTCSEEE--CTTS-CHHHHHHHHTCCCEE
T ss_pred CCCEEEEEc-CCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEEE--ECCc-cHHHHHHHhCCCCcc
Confidence 899998663 3444444 4444432 489999999999887764 6876432 2221 1111 11235799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
+|+- |+|.. ..+..+++.| ++||++|.
T Consensus 220 vv~d---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~ 246 (346)
T 3fbg_A 220 YVFC---TFNTD-------------------------MYYDDMIQLV----KPRGHIAT 246 (346)
T ss_dssp EEEE---SSCHH-------------------------HHHHHHHHHE----EEEEEEEE
T ss_pred EEEE---CCCch-------------------------HHHHHHHHHh----ccCCEEEE
Confidence 8875 33321 2456777776 99999964
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.24 Score=51.88 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=79.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-----------CCceEEEEeC---CHHHHHHHH-----------HHHHHc-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-----------NTGLIYANEM---KASRLKSLT-----------ANLHRM-----G 227 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-----------~~g~V~a~D~---~~~rl~~l~-----------~n~~r~-----g 227 (384)
+.-+|||+|-|+|.-.+...+... ..-+++++|. +++-+..+- +.++.+ |
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 345899999999998776665531 1135899999 776665322 222222 1
Q ss_pred C---------ceEEEEecCCCCcccccC---CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 016730 228 V---------TNTIVCNYDGNELPKVLG---LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (384)
Q Consensus 228 ~---------~~v~~~~~D~~~~~~~~~---~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~ 295 (384)
+ -.+.+..+|+......+. ...||.|++|+- ...++|++ |+. +++....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f-----~p~~np~~---w~~-----------~~~~~l~ 206 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF-----APAKNPDM---WTQ-----------NLFNAMA 206 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCS-----CGGGCGGG---SCH-----------HHHHHHH
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCC-----CCcCChhh---hhH-----------HHHHHHH
Confidence 1 113345567665322221 257999999984 23567774 333 3556666
Q ss_pred HchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 296 ~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
+++ +|||++...+|. ..|...|.+.++.+..
T Consensus 207 ~~~----~~g~~~~t~~~~-------~~vr~~L~~aGf~v~~ 237 (676)
T 3ps9_A 207 RLA----RPGGTLATFTSA-------GFVRRGLQDAGFTMQK 237 (676)
T ss_dssp HHE----EEEEEEEESCCC-------HHHHHHHHHHTCEEEE
T ss_pred HHh----CCCCEEEeccCc-------HHHHHHHHhCCeEEEe
Confidence 664 999998654443 4677777777776554
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.056 Score=52.11 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC-CcccccCCCCCCE
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPKVLGLNTVDR 252 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~fD~ 252 (384)
++++|++||-.|+|+ |..+..++..++ .+|+++|.++++++.++ ++|.+.+. ..+.. ++..... +.||+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~----~lGa~~v~--~~~~~~~~~~~~~-~~~D~ 246 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAM----KMGADHYI--ATLEEGDWGEKYF-DTFDL 246 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHH----HHTCSEEE--EGGGTSCHHHHSC-SCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH----HcCCCEEE--cCcCchHHHHHhh-cCCCE
Confidence 578999999999843 333445555543 47999999999887765 37876432 22211 2211121 47999
Q ss_pred EEE
Q 016730 253 VLL 255 (384)
Q Consensus 253 Vll 255 (384)
|+-
T Consensus 247 vid 249 (360)
T 1piw_A 247 IVV 249 (360)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.55 Score=45.88 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=45.5
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNT 249 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~~ 249 (384)
.+++|++||=.|||+ |..+..+|..++ ...|+++|.+++|++.++ ++|.+.+ +..+..++. ....+..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAK----ELGADHV--IDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHH----HHTCSEE--ECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HcCCCEE--EcCCCCCHHHHHHHHhCCCC
Confidence 578999999888643 333334444442 238999999999988764 5787633 333222221 1122347
Q ss_pred CCEEEE
Q 016730 250 VDRVLL 255 (384)
Q Consensus 250 fD~Vll 255 (384)
+|+|+-
T Consensus 283 ~D~vid 288 (404)
T 3ip1_A 283 AKLFLE 288 (404)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999975
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.094 Score=56.11 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccC----CceEEEEeCCHHHHHHHHHHH
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN----TGLIYANEMKASRLKSLTANL 223 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~----~g~V~a~D~~~~rl~~l~~n~ 223 (384)
+..+|||++||.||.++-+.+.... --.+.|+|+++..++..+.|.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3457999999999999877664211 026899999999999998883
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=1.1 Score=41.52 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=74.1
Q ss_pred CCceEEEeccCCC-hHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.|++.| |.+.+++..+ .....|+.++.++...+.+.+..+..+ .+.++..|..+..... ..
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhc
Confidence 5778888888754 4666666644 334589999999776666666666655 4677788988753210 12
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+..|.++.+|--...+.+ ..| ....+.++.... ..-...+++.++..+ +.+|++|+.+.
T Consensus 108 g~iD~lVnnAG~~~~~~~-~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m----~~~g~Iv~isS 170 (293)
T 3grk_A 108 GKLDFLVHAIGFSDKDEL-TGR--YIDTSEANFTNTMLISVYSLTAVSRRAEKLM----ADGGSILTLTY 170 (293)
T ss_dssp SCCSEEEECCCCCCHHHH-TSC--GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHT----TTCEEEEEEEC
T ss_pred CCCCEEEECCccCCcccc-ccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCEEEEEee
Confidence 579999987642220000 011 112233333322 222334556666664 77899987654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.063 Score=51.31 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=40.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
-.+|+.|||.+||+|.. ++.|..++ -..+++|+++..++.+++++++.+..
T Consensus 250 ~~~~~~VlDpF~GsGtt-~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~~~~ 300 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTT-GLVAERES--RKWISFEMKPEYVAASAFRFLDNNIS 300 (323)
T ss_dssp CCTTCEEEETTCTTCHH-HHHHHHTT--CEEEEEESCHHHHHHHHGGGSCSCSC
T ss_pred CCCCCEEEECCCCCCHH-HHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhcccc
Confidence 46899999999999974 44455543 48999999999999999998876653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.072 Score=50.94 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=60.1
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCc-ccccCCCCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NEL-PKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~-~~~~~~~~fD 251 (384)
++ +|++||-.|+|+ |..+..++..+.+..+|+++|.++++++.++ ++|.+.+. ..+. .+. .....+..||
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~vi--~~~~~~~~~~~~~~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL----ELGADYVS--EMKDAESLINKLTDGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH----HHTCSEEE--CHHHHHHHHHHHHTTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH----HhCCCEEe--ccccchHHHHHhhcCCCcc
Confidence 66 899999999854 3344555555510247999999999987765 46876432 2111 011 1111224799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|+- |+|.. ..+..+++.+ ++||+++...
T Consensus 241 ~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~g 269 (344)
T 2h6e_A 241 IAID---LVGTE-------------------------ETTYNLGKLL----AQEGAIILVG 269 (344)
T ss_dssp EEEE---SSCCH-------------------------HHHHHHHHHE----EEEEEEEECC
T ss_pred EEEE---CCCCh-------------------------HHHHHHHHHh----hcCCEEEEeC
Confidence 9975 33321 2456677776 9999988643
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.67 Score=41.73 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=74.6
Q ss_pred CCceEEEeccCCChHHHHHHHHcc--CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~--~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.+.+|| +..|+|+.+.+++..+. ....|+.++.+..+++.+.+.+...|. ++.++..|..+.... . ..
T Consensus 3 ~~k~vl-ITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVAL-VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEE-ESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 355677 45577888888887553 345899999999988888888877663 466778898875321 1 01
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCC-HHHHH----HHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKS-LEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~-~~~i~----~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.+|.|+..|-....+.. ... .++.. ....-...+++.+...+ +++|++|+.+.
T Consensus 81 g~id~li~~Ag~~~~~~~--------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~g~iv~~sS 139 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVAD--------PTPFHIQAEVTMKTNFFGTRDVCTELLPLI----KPQGRVVNVSS 139 (276)
T ss_dssp SSEEEEEECCCCCCCTTC--------CSCHHHHHHHHHHHHTHHHHHHHHHHGGGE----EEEEEEEEECC
T ss_pred CCCCEEEECCcccccCCC--------ccccHHHHHhhhheeeeeHHHHHHHHHHhh----CCCCEEEEECC
Confidence 378999987643322211 011 12221 22222334556666654 66789988765
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.32 E-value=2.2 Score=39.54 Aligned_cols=82 Identities=13% Similarity=-0.020 Sum_probs=53.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEE-ecCCCCcccccC-CCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVC-NYDGNELPKVLG-LNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~-~~D~~~~~~~~~-~~~fD~Vl 254 (384)
+|.+|| +.-|+|+.+.+++..+. ....|++++.+......+...+....-.++.++ .+|..+...... ...+|.|+
T Consensus 10 ~~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 10 EGSLVL-VTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 467888 44567888998887553 335899999998887766655443211356666 688876432211 13689999
Q ss_pred EcCCCC
Q 016730 255 LDAPCS 260 (384)
Q Consensus 255 lDaPCS 260 (384)
..+..+
T Consensus 89 h~A~~~ 94 (342)
T 1y1p_A 89 HIASVV 94 (342)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 877543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=1 Score=40.22 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=55.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||= ..|+|+.+.+++..+-. ...|++++.++.+++.+.+.+...+. ++.++..|..+.... . ..+
T Consensus 10 ~~~~vlV-tGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAII-TGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEE-TTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEE-ECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3567774 45678888888876543 35899999999998888877776664 466778898864321 1 013
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999986643
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.53 Score=43.84 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=77.7
Q ss_pred EeCCcCcchhhhcCCCCCceEEEeccCC-ChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 162 LQSASSFLPVMALAPQEKERVIDMAAAP-GGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 162 ~Qd~ss~l~~~~L~~~~g~~VLD~cagp-Ggkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
.|.++|+-....+ .|.+||=.|++. +|.+.+++..+ .....|+.+|.+.+..+.+.+..+..|- +.++..|..
T Consensus 16 ~~gp~sm~~~~~l---~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~Dv~ 90 (296)
T 3k31_A 16 TQGPGSMRTGMLM---EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGV--KLTVPCDVS 90 (296)
T ss_dssp -----CCCCCCTT---TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTC--CEEEECCTT
T ss_pred ccCCccccchhcc---CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEcCCC
Confidence 3556666443333 477888888764 46777777654 3345899999998777777766666653 466778988
Q ss_pred Cccccc--------CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcE
Q 016730 240 ELPKVL--------GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 240 ~~~~~~--------~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
+..... ..+.+|.++.+|-......+. .| ....+.++..... .-...+++.+...+ +.+|+
T Consensus 91 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m----~~~g~ 163 (296)
T 3k31_A 91 DAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELK-GR--YVDTSLGNFLTSMHISCYSFTYIASKAEPLM----TNGGS 163 (296)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHT-SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGC----TTCEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCccccc-CC--hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCE
Confidence 753210 114789999876432210000 01 1122333333222 22334555566654 77899
Q ss_pred EEEEec
Q 016730 308 IVYSTC 313 (384)
Q Consensus 308 lvYsTC 313 (384)
+|+.+.
T Consensus 164 IV~isS 169 (296)
T 3k31_A 164 ILTLSY 169 (296)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 987654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.22 Score=47.38 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=47.8
Q ss_pred cCCCCCceEEEeccC--CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCC
Q 016730 174 LAPQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cag--pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~ 247 (384)
..+++|++||-.||| -|..+..++...+ .+|+++|.++++++.+++ +|.+.+ +.....++. ....+
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lga~~~--~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLR----LGAAYV--IDTSTAPLYETVMELTNG 211 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSEE--EETTTSCHHHHHHHHTTT
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----CCCcEE--EeCCcccHHHHHHHHhCC
Confidence 467899999998876 3555556666553 489999999998887754 677643 222222221 11223
Q ss_pred CCCCEEEE
Q 016730 248 NTVDRVLL 255 (384)
Q Consensus 248 ~~fD~Vll 255 (384)
..||+|+-
T Consensus 212 ~g~Dvvid 219 (340)
T 3gms_A 212 IGADAAID 219 (340)
T ss_dssp SCEEEEEE
T ss_pred CCCcEEEE
Confidence 47998875
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.06 Score=50.80 Aligned_cols=66 Identities=6% Similarity=0.018 Sum_probs=44.0
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
..+++|++||=.|||+ |..+..++..++ .+|++++ ++++++.++ ++|.+.+. + | ... . +..||+
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~----~lGa~~v~--~-d---~~~-v-~~g~Dv 202 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAA----KRGVRHLY--R-E---PSQ-V-TQKYFA 202 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHH----HHTEEEEE--S-S---GGG-C-CSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHH----HcCCCEEE--c-C---HHH-h-CCCccE
Confidence 3578999999888843 444445555553 4899999 988887764 47875432 3 4 222 2 468998
Q ss_pred EE
Q 016730 253 VL 254 (384)
Q Consensus 253 Vl 254 (384)
|+
T Consensus 203 v~ 204 (315)
T 3goh_A 203 IF 204 (315)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.02 E-value=1.1 Score=40.71 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=75.3
Q ss_pred CCceEEEeccC-CChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAA-PGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cag-pGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.|++ . |.+.+++..+ .....|+.++.+..+++.+.+.+...+-.++.++..|..+..... ..
T Consensus 21 ~~k~vlITGasg~-GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 21 KGKVVLVTAAAGT-GIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp TTCEEEESSCSSS-SHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCC-chHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 46678866663 3 4556666543 334589999999999999888887766567888899998753211 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.+|.++..|--+..+.+ ...+.++..... .-...+++.++..+.. -+.+|++|+.+.
T Consensus 100 g~id~li~~Ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~~iv~~sS 161 (266)
T 3o38_A 100 GRLDVLVNNAGLGGQTPV-------VDMTDEEWDRVLNVTLTSVMRATRAALRYFRG-VDHGGVIVNNAS 161 (266)
T ss_dssp SCCCEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-SSCCEEEEEECC
T ss_pred CCCcEEEECCCcCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCeEEEEeCC
Confidence 478999997653332221 122333333222 2223445555554410 025678877643
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.48 Score=44.24 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||= .-|.||.+.+++..+- ....|+.+|.+..+++.+.+.+...+..++.++..|..+..... ..+
T Consensus 40 ~~k~vlV-TGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 118 (293)
T 3rih_A 40 SARSVLV-TGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG 118 (293)
T ss_dssp TTCEEEE-TTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEE-eCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 3566774 4456777887777553 34589999999999888888887766556888889998753210 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++.+|--
T Consensus 119 ~iD~lvnnAg~ 129 (293)
T 3rih_A 119 ALDVVCANAGI 129 (293)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.79 Score=41.47 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cC-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG-----L 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~-----~ 247 (384)
.|.+|| +..|+|+.+.+++..+.. ...|++++. ++..++.+.+.+...|. ++.++..|..+.... .. .
T Consensus 20 ~~k~vl-ItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 366777 455678888888876543 348999998 88888888777777664 466778898875321 10 1
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.+|.|+..+.....+.+ ...+.++.... ..-...+++.+...+ +.||++|+.+.
T Consensus 98 ~~~d~vi~~Ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~iv~~sS 156 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDE-------LEVTQELFDKVFNLNTRGQFFVAQQGLKHC----RRGGRIILTSS 156 (274)
T ss_dssp SCEEEEECCCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHE----EEEEEEEEECC
T ss_pred CCCCEEEECCCCCCCccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCEEEEEcC
Confidence 368999876643322211 12233333222 222334555556654 45688887653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.21 Score=43.41 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=57.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
.++++|++||-.|++ |+.+..++++... ..+|+++|.++++++.++ .+|...+ +..+..+.. ......
T Consensus 34 ~~~~~g~~vlV~Ga~-ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~----~~g~~~~--~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 34 GRLSPGERVLIHSAT-GGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGVEYV--GDSRSVDFADEILELTDGY 106 (198)
T ss_dssp SCCCTTCEEEETTTT-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCCSEE--EETTCSTHHHHHHHHTTTC
T ss_pred hCCCCCCEEEEeeCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCCEE--eeCCcHHHHHHHHHHhCCC
Confidence 467889999988853 4444444443321 258999999998887654 3576432 222111111 111224
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.|+.. .|. ..+..+++.+ ++||++|...
T Consensus 107 ~~D~vi~~---~g~--------------------------~~~~~~~~~l----~~~G~~v~~g 137 (198)
T 1pqw_A 107 GVDVVLNS---LAG--------------------------EAIQRGVQIL----APGGRFIELG 137 (198)
T ss_dssp CEEEEEEC---CCT--------------------------HHHHHHHHTE----EEEEEEEECS
T ss_pred CCeEEEEC---Cch--------------------------HHHHHHHHHh----ccCCEEEEEc
Confidence 69998852 221 0245677775 9999988643
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.27 Score=46.97 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=58.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc--CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc----ccCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~--~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----~~~~ 247 (384)
.++ +|++||-.|+ |+.+..++++.. +..+|+++|.++++++.++ ++|.+.+ +..+..++.. ...+
T Consensus 164 ~~~-~g~~VlV~Ga--G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~----~~Ga~~~--~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 164 GPI-SGKSVLITGA--GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK----KVGADYV--INPFEEDVVKEVMDITDG 234 (348)
T ss_dssp SCC-TTCCEEEECC--SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH----HHTCSEE--ECTTTSCHHHHHHHHTTT
T ss_pred cCC-CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCEE--ECCCCcCHHHHHHHHcCC
Confidence 356 8999999998 454444444332 2237999999999987765 4677533 2332222211 1122
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
..+|.|+- |+|. ...+..+++.+ ++||+++...
T Consensus 235 ~g~D~vid---~~g~-------------------------~~~~~~~~~~l----~~~G~iv~~g 267 (348)
T 2d8a_A 235 NGVDVFLE---FSGA-------------------------PKALEQGLQAV----TPAGRVSLLG 267 (348)
T ss_dssp SCEEEEEE---CSCC-------------------------HHHHHHHHHHE----EEEEEEEECC
T ss_pred CCCCEEEE---CCCC-------------------------HHHHHHHHHHH----hcCCEEEEEc
Confidence 46999875 3222 12456677775 9999987643
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.26 Score=46.96 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=45.4
Q ss_pred CCCCCceEEEecc--CCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 175 APQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~ca--gpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
++++|++||-.|+ |.|..+..++...+ .+|+++|.++++++.++ .+|.+.+ +..+..++. ....+.
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~----~~ga~~~--~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAK----ALGADET--VNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HHTCSEE--EETTSTTHHHHHHHHTTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----hcCCCEE--EcCCcccHHHHHHHHhCCC
Confidence 5778999999998 33444445555443 48999999999988775 3676543 222211211 111224
Q ss_pred CCCEEEE
Q 016730 249 TVDRVLL 255 (384)
Q Consensus 249 ~fD~Vll 255 (384)
.+|.|+-
T Consensus 235 ~~d~vi~ 241 (343)
T 2eih_A 235 GADKVVD 241 (343)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 7999876
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.13 Score=49.39 Aligned_cols=95 Identities=9% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCCC------ceEEEeccCCChHHHHH-HHHc-cCCc-e-EEEEeCCHH---HHHHHHHHHHHcCCceEEEEecCCCCc
Q 016730 175 APQEK------ERVIDMAAAPGGKTTYI-AALM-KNTG-L-IYANEMKAS---RLKSLTANLHRMGVTNTIVCNYDGNEL 241 (384)
Q Consensus 175 ~~~~g------~~VLD~cagpGgkt~~l-a~~~-~~~g-~-V~a~D~~~~---rl~~l~~n~~r~g~~~v~~~~~D~~~~ 241 (384)
.+++| ++||=.|+ |+.+... .++. +..| . |+++|.+++ +++.++ ++|.+.+ ..+..++
T Consensus 163 ~~~~g~~~~~~~~VlV~Ga--G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~~v---~~~~~~~ 233 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGN--GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----ELDATYV---DSRQTPV 233 (357)
T ss_dssp HHTTTTSCCCCCEEEEECC--SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----HTTCEEE---ETTTSCG
T ss_pred CCCCCcccCCCCEEEEECC--CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----HcCCccc---CCCccCH
Confidence 46789 99999997 6666655 5555 4323 4 999999988 887664 5787644 2222222
Q ss_pred cc--ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 242 PK--VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 242 ~~--~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.. ... +.||.|+- |+|.. ..+..+++.+ ++||+++..
T Consensus 234 ~~i~~~~-gg~Dvvid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 272 (357)
T 2b5w_A 234 EDVPDVY-EQMDFIYE---ATGFP-------------------------KHAIQSVQAL----APNGVGALL 272 (357)
T ss_dssp GGHHHHS-CCEEEEEE---CSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred HHHHHhC-CCCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 11 112 37999874 33321 1356677776 999998864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.17 Score=48.21 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=58.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccc---cCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKV---LGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~---~~~~ 248 (384)
.++++|++||-.|| .|+.+..++++.. ...+|++++.++++++.+++ ++|...+ +.. +..++... ....
T Consensus 151 ~~~~~g~~vlI~Ga-~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~---~~g~~~~--~d~~~~~~~~~~~~~~~~~ 224 (345)
T 2j3h_A 151 CSPKEGETVYVSAA-SGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT---KFGFDDA--FNYKEESDLTAALKRCFPN 224 (345)
T ss_dssp SCCCTTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TSCCSEE--EETTSCSCSHHHHHHHCTT
T ss_pred hCCCCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HcCCceE--EecCCHHHHHHHHHHHhCC
Confidence 35789999998886 2344444444332 12489999999998877652 3576532 222 11122111 1124
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+|.|+-.+. . ..+..+++.+ ++||+++..
T Consensus 225 ~~d~vi~~~g---~--------------------------~~~~~~~~~l----~~~G~~v~~ 254 (345)
T 2j3h_A 225 GIDIYFENVG---G--------------------------KMLDAVLVNM----NMHGRIAVC 254 (345)
T ss_dssp CEEEEEESSC---H--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred CCcEEEECCC---H--------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 6999875322 0 1356677776 999998854
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.22 Score=47.39 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC--CCCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG--LNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~--~~~fD 251 (384)
.+++|++||-.|+|+ |..+..++..++ .+|+++|.++++++.++ ++|.+.+ +.....++..... ...+|
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~~--~d~~~~~~~~~~~~~~~~~d 232 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAK----ELGADLV--VNPLKEDAAKFMKEKVGGVH 232 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHH----HTTCSEE--ECTTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HCCCCEE--ecCCCccHHHHHHHHhCCCC
Confidence 578999999999854 333444444442 48999999999988764 4787532 2222112111000 03689
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.|+- |+|.. ..+..+++.+ ++||+++..
T Consensus 233 ~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 260 (339)
T 1rjw_A 233 AAVV---TAVSK-------------------------PAFQSAYNSI----RRGGACVLV 260 (339)
T ss_dssp EEEE---SSCCH-------------------------HHHHHHHHHE----EEEEEEEEC
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEe
Confidence 8875 33321 1356677775 999998754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=3 Score=37.79 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=73.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.| |.||.+.+++..+. ....|+.++.+..+++.+.+.+.. .+-.++.++..|..+..... ..
T Consensus 7 ~~k~~lVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 7 SEAVAVVTG-GSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 356677555 45667777776543 345899999999999988888776 55455788889988753210 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+..|.++.++--+..+.+. ..+.++... ...-...+++.++..+. -+.+|++|+.+
T Consensus 86 g~id~lvnnAg~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~--~~~~g~iv~is 145 (265)
T 3lf2_A 86 GCASILVNNAGQGRVSTFA-------ETTDEAWSEELQLKFFSVIHPVRAFLPQLE--SRADAAIVCVN 145 (265)
T ss_dssp CSCSEEEECCCCCCCBCTT-------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSTTEEEEEEE
T ss_pred CCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCeEEEEEC
Confidence 4789999877533322221 123333322 22223344555555541 03367787654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.22 Score=47.15 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=58.1
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNT 249 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~~~~ 249 (384)
.++++|++||-.||+ |+.+..+++++. ....|+++|.++++++.+ +++|...+ +-..|...+... ...+.
T Consensus 141 ~~~~~g~~vlV~Ga~-ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~----~~~g~~~~-~d~~~~~~~~~~~~~~~~~~ 214 (333)
T 1v3u_A 141 CGVKGGETVLVSAAA-GAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL----KQIGFDAA-FNYKTVNSLEEALKKASPDG 214 (333)
T ss_dssp SCCCSSCEEEEESTT-BHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHTTCSEE-EETTSCSCHHHHHHHHCTTC
T ss_pred hCCCCCCEEEEecCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HhcCCcEE-EecCCHHHHHHHHHHHhCCC
Confidence 357889999998863 444444444432 224899999999888766 34576432 211121121110 11146
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|.|+-.+. . ..+..+++.+ ++||+++..
T Consensus 215 ~d~vi~~~g---~--------------------------~~~~~~~~~l----~~~G~~v~~ 243 (333)
T 1v3u_A 215 YDCYFDNVG---G--------------------------EFLNTVLSQM----KDFGKIAIC 243 (333)
T ss_dssp EEEEEESSC---H--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred CeEEEECCC---h--------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 999876432 0 1256677776 999998864
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.16 Score=48.49 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=36.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCH---HHHHHHHHHHHHcC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA---SRLKSLTANLHRMG 227 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~---~rl~~l~~n~~r~g 227 (384)
-.+|+.|||.+||+|..+. .|..++ -..+++|+++ .-++.+++++.+.|
T Consensus 240 ~~~~~~vlDpF~GsGtt~~-aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTAR-VAIQEG--RNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHH-HHHHHT--CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHH-HHHHcC--CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 4689999999999997544 444443 4799999999 99999999887765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.33 Score=46.51 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=58.1
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---CCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLNT 249 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~~~~ 249 (384)
..+++|++||=.| |.|+.+..++++... ..+|+++|.++++++.+++ +|...+ +..+..++.... .+..
T Consensus 163 ~~~~~g~~VlV~G-g~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~~--~~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 163 AGLTEGESVLIHG-GTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER----LGAKRG--INYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp TCCCTTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHHSSC
T ss_pred cCCCCCCEEEEEc-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEE--EeCCchHHHHHHHHHhCCC
Confidence 3578999999663 344444433333221 2489999999999887754 676543 233222221110 1357
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+|.|+- |+|.. .+..+++.+ ++||+++...
T Consensus 236 ~Dvvid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~g 265 (353)
T 4dup_A 236 VDIILD---MIGAA--------------------------YFERNIASL----AKDGCLSIIA 265 (353)
T ss_dssp EEEEEE---SCCGG--------------------------GHHHHHHTE----EEEEEEEECC
T ss_pred ceEEEE---CCCHH--------------------------HHHHHHHHh----ccCCEEEEEE
Confidence 998875 33321 245567775 9999988643
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=1.7 Score=39.25 Aligned_cols=129 Identities=14% Similarity=0.093 Sum_probs=75.7
Q ss_pred CCceEEEeccCCC-hHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.|++.| |.+.+++..+ .....|+.++.+....+.+.+..+..+-.++.++..|..+..... ..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4677887777643 3566666544 334589999998777777777777766556788889998753211 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.+|.++..+.....+.. +.-....+.++..... .-...+++.+...+ +++|++|+.+.
T Consensus 86 g~id~li~~Ag~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~g~iv~isS 148 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEEL---VGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMM----TEGGSIVTLTY 148 (266)
T ss_dssp SCCCEEEECCCCCCGGGG---SSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGC----TTCEEEEEEEC
T ss_pred CCeeEEEEcccccccccc---ccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhc----CCCceEEEEec
Confidence 478999987754331100 0011122333333222 22333555566654 77899887664
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.56 Score=52.95 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=55.0
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-------------ccc
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-------------PKV 244 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-------------~~~ 244 (384)
.-+|+|++||.||.+.-+-+. +- -.|.|+|+++..++..+.|.. +..+.+.|...+ ...
T Consensus 851 ~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 457999999999988876553 11 258899999999999888742 223334443211 001
Q ss_pred c-CCCCCCEEEEcCCCCCCCcCCC
Q 016730 245 L-GLNTVDRVLLDAPCSGTGVISK 267 (384)
Q Consensus 245 ~-~~~~fD~VllDaPCSg~G~~~r 267 (384)
+ ..+.+|+|+--|||-+.-...+
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr 947 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNR 947 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSC
T ss_pred ccccCccceEEecCCCcccccccc
Confidence 1 1246999999999977765543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.16 Score=48.17 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=58.3
Q ss_pred cCCCCCceEEEeccC--CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cCCC
Q 016730 174 LAPQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cag--pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~~~ 248 (384)
..+++|++||-.||+ -|..+..++...+ .+|++++.++++++.+. +.+|...+ +.....++... ..++
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLV---EELGFDGA--IDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH---HTTCCSEE--EETTTSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH---HHcCCCEE--EECCCHHHHHHHHHhcCC
Confidence 367899999977763 2333334444332 48999999999887763 34677532 22222222110 1125
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+|.|+- |+|. ..+..+++.+ ++||+++..
T Consensus 218 ~~d~vi~---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 247 (336)
T 4b7c_A 218 GIDVFFD---NVGG--------------------------EILDTVLTRI----AFKARIVLC 247 (336)
T ss_dssp CEEEEEE---SSCH--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred CceEEEE---CCCc--------------------------chHHHHHHHH----hhCCEEEEE
Confidence 7998875 2221 1456777776 999998864
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=91.32 E-value=1.5 Score=40.26 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC
Q 016730 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG 227 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g 227 (384)
...+|.|..| ++++-....++. .|.+||=.|+ .||.+.+++..+. ....|+.++.++++++.+.+.+...|
T Consensus 9 ~~~~~~~~~g------~~~m~~~~~~~l-~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~ 80 (276)
T 3r1i_A 9 MGTLEAQTQG------PGSMSVLDLFDL-SGKRALITGA-STGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG 80 (276)
T ss_dssp --------------------CGGGGGCC-TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT
T ss_pred ccceeccccC------CCCcccccccCC-CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 3456666555 444433333333 4677775554 5677777776553 34589999999999999888888776
Q ss_pred CceEEEEecCCCCcccc---c-----CCCCCCEEEEcCCC
Q 016730 228 VTNTIVCNYDGNELPKV---L-----GLNTVDRVLLDAPC 259 (384)
Q Consensus 228 ~~~v~~~~~D~~~~~~~---~-----~~~~fD~VllDaPC 259 (384)
. ++.++..|..+.... . ..+..|.++.+|-.
T Consensus 81 ~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 81 G-KALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp C-CCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred C-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5 466678898875321 1 01479999997753
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.30 E-value=0.13 Score=47.29 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=49.6
Q ss_pred EEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 232 ~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.++++|+......+..++||.|++|||.... . +.-+ .+. + .......-..+|..+.++| +|||.++..
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~-~--~~~d-~~~-~---~~~y~~~~~~~l~~~~~~L----k~~g~i~v~ 73 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLS-K--ADWD-SFD-S---HNEFLAFTYRWIDKVLDKL----DKDGSLYIF 73 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSC-S--SGGG-CCS-S---HHHHHHHHHHHHHHHHHHE----EEEEEEEEE
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCC-c--cccc-ccC-C---HHHHHHHHHHHHHHHHHHh----cCCeEEEEE
Confidence 4557887654333444789999999998422 1 0000 000 1 2223334455677777765 999999877
Q ss_pred eccCCccccHHHHHHHHhcCCCEEee
Q 016730 312 TCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 312 TCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
.|.. +....+ .++...++.+..
T Consensus 74 ~~d~---~~~~~~-~~~~~~gf~~~~ 95 (260)
T 1g60_A 74 NTPF---NCAFIC-QYLVSKGMIFQN 95 (260)
T ss_dssp ECHH---HHHHHH-HHHHHTTCEEEE
T ss_pred cCcH---HHHHHH-HHHHhhccceeE
Confidence 6542 322222 344555665543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=91.24 E-value=2.1 Score=39.19 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.+...|..++.++..|..+.... . ..+
T Consensus 27 ~~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 105 (286)
T 1xu9_A 27 QGKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 105 (286)
T ss_dssp TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 366787555 56778888776543 3358999999999999888888777766788888998874211 1 014
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
.+|.|+..+
T Consensus 106 ~iD~li~na 114 (286)
T 1xu9_A 106 GLDMLILNH 114 (286)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEECC
Confidence 799999873
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.14 E-value=2 Score=38.41 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.+..+++.+.+.+...+. .+.++..|..+..... ..+
T Consensus 8 ~~k~vlITG-as~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTG-SGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 366777555 56777777777553 335899999999999999888877664 5677788988753211 014
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.++.+|-
T Consensus 86 ~id~li~~Ag 95 (253)
T 3qiv_A 86 GIDYLVNNAA 95 (253)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.16 Score=48.46 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=58.7
Q ss_pred cCCCCCceEEEeccC--CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCC
Q 016730 174 LAPQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cag--pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~ 247 (384)
..+++|++||=.||+ -|..+..++..++ .+|++++.++++++.+++ +|.+.+ +..+ .++. ....+
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga~~v--~~~~-~~~~~~v~~~~~~ 225 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVKS----VGADIV--LPLE-EGWAKAVREATGG 225 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCSEE--EESS-TTHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEE--ecCc-hhHHHHHHHHhCC
Confidence 357889999977762 2334445555443 489999999998876654 677643 2333 2221 11223
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..+|+|+- |+|.. .+..+++.+ ++||+++..
T Consensus 226 ~g~Dvvid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 256 (342)
T 4eye_A 226 AGVDMVVD---PIGGP--------------------------AFDDAVRTL----ASEGRLLVV 256 (342)
T ss_dssp SCEEEEEE---SCC----------------------------CHHHHHHTE----EEEEEEEEC
T ss_pred CCceEEEE---CCchh--------------------------HHHHHHHhh----cCCCEEEEE
Confidence 47999875 33321 235677775 999998854
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.89 E-value=1.9 Score=39.49 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=58.3
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-ccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-~~~---~-----~~ 247 (384)
.+.+||=.| |.||.+.+++..+ .....|+.++.+..+++.+.+.+...+-.++.++..|..+. ... . ..
T Consensus 11 ~~k~vlITG-as~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 466677444 5577888877755 33458999999999998888888777666788888999875 211 0 01
Q ss_pred CCCCEEEEcCCCC
Q 016730 248 NTVDRVLLDAPCS 260 (384)
Q Consensus 248 ~~fD~VllDaPCS 260 (384)
+.+|.++.+|-..
T Consensus 90 g~iD~lv~nAg~~ 102 (311)
T 3o26_A 90 GKLDILVNNAGVA 102 (311)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4799999977543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.89 E-value=2.2 Score=38.88 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=74.8
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC------------HHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~------------~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+ ..+++.+...+...|. ++.++..|..+....
T Consensus 9 ~gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTG-GARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHHH
Confidence 466777555 45667777777543 34589999987 8888888888877764 567778898875321
Q ss_pred ---c-----CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 245 ---L-----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 245 ---~-----~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
. ..+..|.++.+|-....+ .+ .+.++... ...-...+++.++..+ +.+|++|+.+
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~-----~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~g~iv~is 153 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLG-----AH----LPVQAFADAFDVDFVGVINTVHAALPYL----TSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCC-----TT----CCTHHHHHHHHHHTHHHHHHHHHHGGGC----CTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCccc-----Cc----CCHHHHHHHhhhhhhhhHHHHHHHHHHh----hcCcEEEEec
Confidence 1 114799999977543332 11 12222222 2222334555666654 7889998876
Q ss_pred c
Q 016730 313 C 313 (384)
Q Consensus 313 C 313 (384)
.
T Consensus 154 S 154 (287)
T 3pxx_A 154 S 154 (287)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.51 Score=44.49 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=58.9
Q ss_pred cCCCCCceEEEeccC--CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCC
Q 016730 174 LAPQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cag--pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~ 247 (384)
..+++|++||=.|++ -|..+..++...+ .+|++++.++++++.++ .+|.+.+ +..+..++. ....+
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~~Ga~~~--~~~~~~~~~~~~~~~~~~ 207 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAK----ALGAWET--IDYSHEDVAKRVLELTDG 207 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTTT
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCCEE--EeCCCccHHHHHHHHhCC
Confidence 357899999977632 2333344444443 48999999999988775 4676533 233222221 11223
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
..+|.|+- |+|.. .+..+++.+ ++||+++...
T Consensus 208 ~g~Dvvid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~g 239 (325)
T 3jyn_A 208 KKCPVVYD---GVGQD--------------------------TWLTSLDSV----APRGLVVSFG 239 (325)
T ss_dssp CCEEEEEE---SSCGG--------------------------GHHHHHTTE----EEEEEEEECC
T ss_pred CCceEEEE---CCChH--------------------------HHHHHHHHh----cCCCEEEEEe
Confidence 57998875 33321 345677775 9999988643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.79 E-value=1.9 Score=39.13 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.++.+.++++.+.+.++..+-.++.++..|..+..... ..+
T Consensus 9 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (262)
T 3pk0_A 9 QGRSVVVTG-GTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG 87 (262)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 466777555 55777887777553 33589999999999999888888777556888889998753211 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.+|-
T Consensus 88 ~id~lvnnAg 97 (262)
T 3pk0_A 88 GIDVVCANAG 97 (262)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.73 E-value=4.6 Score=35.82 Aligned_cols=79 Identities=8% Similarity=0.083 Sum_probs=56.3
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
|.+||=.| |+||.+.+++..+. ....|+.++.++.+++.+.+.++..|. .+.++..|..+..... ..+.
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENLA 82 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 55677555 56777777776553 345899999999999999888888775 4677788988753210 1257
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.++..|--
T Consensus 83 id~li~~Ag~ 92 (247)
T 3lyl_A 83 IDILVNNAGI 92 (247)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987743
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=2.7 Score=37.69 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=54.3
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
|.+||=.| |+||.+.+++..+- ....|+.++.++.+++.+.+.+...|. ++.++..|..+.... . ..+.
T Consensus 7 ~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 84 (247)
T 2jah_A 7 GKVALITG-ASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADRQGVDAAVASTVEALGG 84 (247)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56677555 55777887777553 335899999999999888887776664 467778898874321 0 0147
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.++.++-
T Consensus 85 id~lv~nAg 93 (247)
T 2jah_A 85 LDILVNNAG 93 (247)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999998764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.56 E-value=2.3 Score=38.43 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=74.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+..+++.+.+.+...|. ++.++..|..+.... . ..+
T Consensus 11 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 11 NDAVAIVTG-AAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQFG 88 (256)
T ss_dssp TTCEEEECS-CSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 366777555 55667777776543 335899999999999999888888774 467778898875321 0 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..|.++.+|--+..+.+ ..+.++.... ..-...+++.++..+.. +.+|++|+.+.
T Consensus 89 ~id~lv~nAg~~~~~~~--------~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~~~g~iv~isS 147 (256)
T 3gaf_A 89 KITVLVNNAGGGGPKPF--------DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQK--AGGGAILNISS 147 (256)
T ss_dssp CCCEEEECCCCCCCCCT--------TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CCCEEEECCCCCCCCCC--------CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cCCcEEEEEcC
Confidence 79999987753332222 2233333222 12223345555544311 35688887654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.3 Score=47.07 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=59.3
Q ss_pred CCCCCceEEEecc-C-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cCCCC
Q 016730 175 APQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNT 249 (384)
Q Consensus 175 ~~~~g~~VLD~ca-g-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~~~~ 249 (384)
++++|++||-.|| | .|..+..++...+ .+|++++.++++++.+++ +|.+.+ +..+..++... .....
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~----~Ga~~~--~~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKSAFLKS----LGCDRP--INYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCSEE--EETTTSCHHHHHHHHCTTC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH----cCCcEE--EecCChhHHHHHHHhcCCC
Confidence 5789999998883 3 3444445555542 489999999998877653 787643 23322222111 11246
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+|.|+- |+|. ..+..+++.+ ++||+++...
T Consensus 232 ~D~vid---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~g 261 (362)
T 2c0c_A 232 VDVVYE---SVGG--------------------------AMFDLAVDAL----ATKGRLIVIG 261 (362)
T ss_dssp EEEEEE---CSCT--------------------------HHHHHHHHHE----EEEEEEEECC
T ss_pred CCEEEE---CCCH--------------------------HHHHHHHHHH----hcCCEEEEEe
Confidence 999875 3221 1345677775 9999988643
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=90.49 E-value=0.37 Score=48.00 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=35.3
Q ss_pred cCCCCCceEEEecc-CC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 174 LAPQEKERVIDMAA-AP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 174 L~~~~g~~VLD~ca-gp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
.++++|++||=.|| |+ |..+..++..++ .+|++++.++++++.++ ++|.+.+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~~~----~lGa~~v 277 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEICR----AMGAEAI 277 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HHTCCEE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHHHH----hhCCcEE
Confidence 45789999997775 22 334445555443 47899999999988774 4787643
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=90.49 E-value=5.2 Score=36.16 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=54.4
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHc-CCceEEEEecCCCCc----cccc------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRM-GVTNTIVCNYDGNEL----PKVL------ 245 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~----~~~~------ 245 (384)
|.+|| +.-|.||.+.+++..+. ....|+.++. ++.+++.+.+.+... | .++.++..|..+. ....
T Consensus 11 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 11 CPAAV-ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp CCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCccccHHHHHHHHHHH
Confidence 55677 45566788888887553 3358999999 998888887777655 5 3567778898876 2210
Q ss_pred --CCCCCCEEEEcCCC
Q 016730 246 --GLNTVDRVLLDAPC 259 (384)
Q Consensus 246 --~~~~fD~VllDaPC 259 (384)
..+.+|.++..+-.
T Consensus 89 ~~~~g~id~lv~nAg~ 104 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASA 104 (276)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCEEEECCCC
Confidence 01378999997754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.42 E-value=2.7 Score=39.07 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=57.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.|++ ||.+.+++..+. ....|+.++.+..+++.+.+.+...|. ++.++..|..+..... ..+
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 57778866655 677777777543 345899999999999999888887765 4677788988753211 014
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
.+|.++.+|--.
T Consensus 108 ~id~lvnnAg~~ 119 (301)
T 3tjr_A 108 GVDVVFSNAGIV 119 (301)
T ss_dssp SCSEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 799999977543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=90.35 E-value=4.3 Score=37.04 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=56.9
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCccccc--------C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~~--------~ 246 (384)
.|.+||=.| |.||.+.+++..+ .....|+.+|.++..++.+.+.++..+.. .+.++..|..+..... .
T Consensus 10 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (281)
T 3svt_A 10 QDRTYLVTG-GGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW 88 (281)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 366777555 5567777777754 33458999999999999988888877653 5778889988753210 0
Q ss_pred CCCCCEEEEcCC
Q 016730 247 LNTVDRVLLDAP 258 (384)
Q Consensus 247 ~~~fD~VllDaP 258 (384)
.+.+|.++.+|-
T Consensus 89 ~g~id~lv~nAg 100 (281)
T 3svt_A 89 HGRLHGVVHCAG 100 (281)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 147899998764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.34 E-value=3.1 Score=37.69 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.|++ ||.+.+++..+ .....|+.++.+.++++.+.+.+...|. ++.++..|..+.... . ..+
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 10 TDKVVVISGVG-PALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTCEEEEESCC-TTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCcEEEEECCC-cHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46777766654 55677766654 3345899999999999999888887764 467778898875321 0 125
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
..|.++.++
T Consensus 88 ~id~lv~nA 96 (264)
T 3ucx_A 88 RVDVVINNA 96 (264)
T ss_dssp CCSEEEECC
T ss_pred CCcEEEECC
Confidence 799999876
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=0.58 Score=43.97 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCCc-eEEEecc--CCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 176 PQEKE-RVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 176 ~~~g~-~VLD~ca--gpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+++++ +||=.|| +-|..+..++..++ .+|++++.++++++.+++ +|.+.+.- ..+.... .......+|.
T Consensus 143 ~~~~~g~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~-~~~~~~~~d~ 214 (324)
T 3nx4_A 143 IRPQDGEVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS----LGANRILS-RDEFAES-RPLEKQLWAG 214 (324)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH----HTCSEEEE-GGGSSCC-CSSCCCCEEE
T ss_pred cCCCCCeEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCEEEe-cCCHHHH-HhhcCCCccE
Confidence 44432 4776654 22444455555543 489999999999887754 78765332 1221111 1122357898
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|+ |+ +|. ..+..+++.+ ++||+++..
T Consensus 215 v~-d~--~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 240 (324)
T 3nx4_A 215 AI-DT--VGD--------------------------KVLAKVLAQM----NYGGCVAAC 240 (324)
T ss_dssp EE-ES--SCH--------------------------HHHHHHHHTE----EEEEEEEEC
T ss_pred EE-EC--CCc--------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 75 43 221 1457788886 999999864
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=90.15 E-value=0.57 Score=46.30 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=35.1
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
..+++|++||=.|| +|+.+..++++... ..+|++++.++++++.++ ++|.+.+
T Consensus 216 ~~~~~g~~VlV~Ga-sG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~----~lGa~~~ 269 (447)
T 4a0s_A 216 AQMKQGDIVLIWGA-SGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR----ALGCDLV 269 (447)
T ss_dssp TCCCTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTCCCE
T ss_pred cCCCCCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hcCCCEE
Confidence 45789999997765 34444444433322 248899999999988764 5787643
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.6 Score=44.44 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=58.1
Q ss_pred CCCCCceEEEeccCC--ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCCC
Q 016730 175 APQEKERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagp--Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~~ 248 (384)
.+++|++||-.|+|. |..+..++.... ..+|+++|.++++++.++ .+|.+.+ +.....+. ......+
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~----~~g~~~~--~~~~~~~~~~~~~~~~~~~ 239 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAK----RAGADYV--INASMQDPLAEIRRITESK 239 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCCEE--ecCCCccHHHHHHHHhcCC
Confidence 578999999999862 333334444431 258999999999987764 3576533 22221121 1111114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+|.|+-.+ |.. ..+..+++.+ ++||+++..
T Consensus 240 ~~d~vi~~~---g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 270 (347)
T 1jvb_A 240 GVDAVIDLN---NSE-------------------------KTLSVYPKAL----AKQGKYVMV 270 (347)
T ss_dssp CEEEEEESC---CCH-------------------------HHHTTGGGGE----EEEEEEEEC
T ss_pred CceEEEECC---CCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 799987632 221 2356667775 999998764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.02 E-value=2.2 Score=38.61 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=72.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.++++++.+.+.+ | .++.++..|..+..... ..+
T Consensus 7 ~gk~~lVTG-as~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 7 QGKKAIVIG-GTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777666 45667777777543 3458999999998887776654 3 35777788988753211 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+|.++.++-.+..+-+ ...+.++..... .-...+++.+...+ +.+|++|+.+.
T Consensus 82 ~id~lv~nAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~----~~~g~iv~isS 139 (255)
T 4eso_A 82 AIDLLHINAGVSELEPF-------DQVSEASYDRQFAVNTKGAFFTVQRLTPLI----REGGSIVFTSS 139 (255)
T ss_dssp SEEEEEECCCCCCCBCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHGGGE----EEEEEEEEECC
T ss_pred CCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHhhHHHHHHHHHHHHHH----hcCCEEEEECC
Confidence 78999987654332221 122333333222 22233455555554 77899887654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.96 E-value=1.1 Score=42.14 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=54.7
Q ss_pred cCCCCCceEEEec-cCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC-cccccCCCCC
Q 016730 174 LAPQEKERVIDMA-AAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTV 250 (384)
Q Consensus 174 L~~~~g~~VLD~c-agp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~-~~~~~~~~~f 250 (384)
..+++|++||=.| +|+ |..+..++..++ .+|++++ +.++++. ++++|.+.+ +..+..+ +.... ..|
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~----~~~lGa~~~--i~~~~~~~~~~~~--~g~ 216 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAF----LKALGAEQC--INYHEEDFLLAIS--TPV 216 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHH----HHHHTCSEE--EETTTSCHHHHCC--SCE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHH----HHHcCCCEE--EeCCCcchhhhhc--cCC
Confidence 4678999999664 332 334445555543 4788887 5555444 456888743 3333222 22222 579
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|+|+- |+|. ..+..+++.+ ++||+++..
T Consensus 217 D~v~d---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVID---LVGG--------------------------DVGIQSIDCL----KETGCIVSV 244 (321)
T ss_dssp EEEEE---SSCH--------------------------HHHHHHGGGE----EEEEEEEEC
T ss_pred CEEEE---CCCc--------------------------HHHHHHHHhc----cCCCEEEEe
Confidence 98864 3221 1225677776 999998853
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.92 E-value=0.4 Score=45.25 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCCCCc-eEEEecc-C-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcccccCCCCC
Q 016730 175 APQEKE-RVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTV 250 (384)
Q Consensus 175 ~~~~g~-~VLD~ca-g-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~f 250 (384)
++++|+ +||=.|| | -|..+..++..++ .+|++++.++++++.++ .+|.+.+.-. .+. ...........+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~----~lGa~~~i~~-~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLR----VLGAKEVLAR-EDVMAERIRPLDKQRW 217 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHH----HTTCSEEEEC-C---------CCSCCE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HcCCcEEEec-CCcHHHHHHHhcCCcc
Confidence 467886 8998876 2 2334445555543 47999999988887764 4787643211 111 111111122468
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|+- |+|.. .+..+++.+ ++||+++..
T Consensus 218 d~vid---~~g~~--------------------------~~~~~~~~l----~~~G~~v~~ 245 (328)
T 1xa0_A 218 AAAVD---PVGGR--------------------------TLATVLSRM----RYGGAVAVS 245 (328)
T ss_dssp EEEEE---CSTTT--------------------------THHHHHHTE----EEEEEEEEC
T ss_pred cEEEE---CCcHH--------------------------HHHHHHHhh----ccCCEEEEE
Confidence 98864 33211 145677775 999998753
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.88 E-value=2.8 Score=38.88 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCcccc---c-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKV---L-----G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~---~-----~ 246 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.+...|.. ++.++..|..+.... . .
T Consensus 25 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 25 SGKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 356677444 56777888777553 3458999999999998888777766642 577778898875321 1 0
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+.+|.++.++.....+ |......+.++.... ..-...+++.+...+ .+.+|++|+.+.
T Consensus 104 ~g~iD~lvnnAG~~~~~-----~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~---~~~~g~IV~isS 166 (297)
T 1xhl_A 104 FGKIDILVNNAGANLAD-----GTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHL---IKTKGEIVNVSS 166 (297)
T ss_dssp HSCCCEEEECCCCCCCC-----SCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHH---HHTTCEEEEECC
T ss_pred cCCCCEEEECCCcCcCC-----CCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHH---HhcCCEEEEEcC
Confidence 14789999877432221 110112233333222 122233455555544 234588887654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.77 E-value=3.3 Score=37.94 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~ 248 (384)
.|..+|=.|++ +|.+..++..+ .....|+.+|.++++++.+.+.+...|. ++..+..|.++.... ...+
T Consensus 8 ~gKvalVTGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSA-RGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 47777766655 55677776654 3446899999999999999999988886 466678898874221 1236
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
+.|.++.+|-
T Consensus 86 ~iDiLVNNAG 95 (255)
T 4g81_D 86 HVDILINNAG 95 (255)
T ss_dssp CCCEEEECCC
T ss_pred CCcEEEECCC
Confidence 8999988773
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.69 E-value=3 Score=38.12 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=73.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-------------CHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-------------KASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-------------~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
.|.+||=.|+ .||.+.+++..+- ....|+.+|. ++++++.+.+.+...|. ++.++..|..+...
T Consensus 14 ~gk~~lVTGa-s~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 14 QGRVAFITGA-ARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDDAA 91 (280)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHH
Confidence 4667775555 5667777776543 3458999998 78888888888877764 46677889887532
Q ss_pred cc--------CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 244 VL--------GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 244 ~~--------~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.. ..+..|.++.+|--...+-+ ...+.++.... ..-...+++.++..+.. -+.+|++|+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~~g~iv~i 163 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRV-------WELTDEQWDTVIGVNLTGTWRTLRATVPAMIE-AGNGGSIVVV 163 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HCSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCc-------ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCCCEEEEE
Confidence 10 11479999987643322211 12233333321 12223345555554310 0237888876
Q ss_pred ec
Q 016730 312 TC 313 (384)
Q Consensus 312 TC 313 (384)
+.
T Consensus 164 sS 165 (280)
T 3pgx_A 164 SS 165 (280)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.62 E-value=7.1 Score=35.33 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.++..|. ++.++..|..+.... . ..+
T Consensus 30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 356777555 56778888877553 345899999999999888888877664 577778898874321 0 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 108 ~iD~li~~Ag~ 118 (272)
T 1yb1_A 108 DVSILVNNAGV 118 (272)
T ss_dssp CCSEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 79999987643
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.50 E-value=2.9 Score=38.24 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |+||.+.+++..+... ..|++++.++.+++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 43 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 43 ENKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK 120 (285)
T ss_dssp SSCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 356777555 5688888888766443 4788899999888887777766554 4667788988753211 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..|--
T Consensus 121 ~id~li~~Ag~ 131 (285)
T 2c07_A 121 NVDILVNNAGI 131 (285)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.27 Score=47.35 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=55.1
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCH---HHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKA---SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDR 252 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~---~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~ 252 (384)
|++||-.|+ |+.+..+++++.. ..+|+++|.++ ++++.++ .+|.+.+ ..+ ++.... ....+|+
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~----~~ga~~v---~~~--~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE----ETKTNYY---NSS--NGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHH----HHTCEEE---ECT--TCSHHHHHHHCCEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHH----HhCCcee---chH--HHHHHHHHhCCCCCE
Confidence 999999987 6655554444322 24899999988 7776554 4677543 222 221111 0146999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHH-HHHHHchhccCCCCcEEEEEe
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI-LAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL-~~a~~~L~~~lkpGG~lvYsT 312 (384)
|+- |+|... .+ ..+++.+ ++||++|...
T Consensus 250 vid---~~g~~~-------------------------~~~~~~~~~l----~~~G~iv~~g 278 (366)
T 2cdc_A 250 IID---ATGADV-------------------------NILGNVIPLL----GRNGVLGLFG 278 (366)
T ss_dssp EEE---CCCCCT-------------------------HHHHHHGGGE----EEEEEEEECS
T ss_pred EEE---CCCChH-------------------------HHHHHHHHHH----hcCCEEEEEe
Confidence 876 333210 23 6677775 9999988643
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.47 E-value=0.9 Score=41.08 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=73.5
Q ss_pred CCCceEEEeccC-CChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------C
Q 016730 177 QEKERVIDMAAA-PGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------G 246 (384)
Q Consensus 177 ~~g~~VLD~cag-pGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~ 246 (384)
.++.+||=.|++ +||.+.+++..+. ....|+.++.+....+.+++..+..+ .+.++..|..+..... .
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 357788878874 4777887777553 34589999988665666666555555 3667788988753210 1
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhcc-CCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~-~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+..|.++..|--...+.+.. + .+. .+.++..... .-...+++.+...+ +++|++|+.+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~-~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~g~iv~isS 154 (271)
T 3ek2_A 90 WDSLDGLVHSIGFAPREAIAG-D--FLDGLTRENFRIAHDISAYSFPALAKAALPML----SDDASLLTLSY 154 (271)
T ss_dssp CSCEEEEEECCCCCCGGGGSS-C--TTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGE----EEEEEEEEEEC
T ss_pred cCCCCEEEECCccCccccccC-c--cccccCHHHHHHHHhhhHHHHHHHHHHHHHHh----ccCceEEEEec
Confidence 147899998764322110000 0 111 2344443322 22334555666654 67888887654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.42 E-value=3 Score=37.90 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.| |.||.+.+++..+- ....|+.++.+..+++.+.+.+.. .|. .+.++..|..+..... ..
T Consensus 19 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITG-ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 466777555 55677777777553 345899999999999888877765 453 5777788988753211 11
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+..|.++.+|--
T Consensus 97 g~id~lv~nAg~ 108 (266)
T 4egf_A 97 GGLDVLVNNAGI 108 (266)
T ss_dssp TSCSEEEEECCC
T ss_pred CCCCEEEECCCc
Confidence 479999998753
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.40 E-value=3.4 Score=36.67 Aligned_cols=128 Identities=12% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCcccc---c-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKV---L-----G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~--~~~~~~---~-----~ 246 (384)
.|.+||=.| |+||.+.+++..+. ....|+.++.++.+++.+.+.++..+..++.++..|. .+.... . .
T Consensus 13 ~~k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 13 KGRVILVTG-AARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 466777555 55777888777553 3458999999999999999999888766666666666 432110 0 1
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.+.+|.++..|-..+.. .| ....+.++... ...-...+++.++..+. -..+|++|+.+.+
T Consensus 92 ~g~id~lv~nAg~~~~~----~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~~~~~iv~isS~ 155 (247)
T 3i1j_A 92 FGRLDGLLHNASIIGPR----TP--LEQLPDEDFMQVMHVNVNATFMLTRALLPLLK--RSEDASIAFTSSS 155 (247)
T ss_dssp HSCCSEEEECCCCCCCC----SC--GGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHT--TSSSEEEEEECCG
T ss_pred CCCCCEEEECCccCCCC----CC--cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH--hCCCCeEEEEcch
Confidence 14799999977532211 01 11123333322 22223345555555541 1346788876543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.37 E-value=0.25 Score=47.22 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=57.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCccc----ccCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPK----VLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~----~~~~~ 248 (384)
++++|++||-.|++ |+.+..+++++. ...+|+++|.++++++.++ .+|...+ +.. |..++.. ...+
T Consensus 166 ~~~~g~~vlV~Ga~-ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~----~~g~~~~--~d~~~~~~~~~~~~~~~~~- 237 (347)
T 2hcy_A 166 NLMAGHWVAISGAA-GGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR----SIGGEVF--IDFTKEKDIVGAVLKATDG- 237 (347)
T ss_dssp TCCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH----HTTCCEE--EETTTCSCHHHHHHHHHTS-
T ss_pred CCCCCCEEEEECCC-chHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH----HcCCceE--EecCccHhHHHHHHHHhCC-
Confidence 57889999999973 333443333332 1248999999988886654 4676532 221 1122211 1122
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.|+-.+ |. ...+..+++.+ ++||+++...
T Consensus 238 ~~D~vi~~~---g~-------------------------~~~~~~~~~~l----~~~G~iv~~g 269 (347)
T 2hcy_A 238 GAHGVINVS---VS-------------------------EAAIEASTRYV----RANGTTVLVG 269 (347)
T ss_dssp CEEEEEECS---SC-------------------------HHHHHHHTTSE----EEEEEEEECC
T ss_pred CCCEEEECC---Cc-------------------------HHHHHHHHHHH----hcCCEEEEEe
Confidence 699987633 21 12456777876 9999988643
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=89.35 E-value=6.3 Score=35.30 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=54.5
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCcccc---c-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NELPKV---L-----G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~--~~~~~~---~-----~ 246 (384)
.|.+||=.| |.||.+.+++..+ .....|+.+|.+..+++.+.+.+...+-..+.++..|. .+.... . .
T Consensus 11 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (252)
T 3f1l_A 11 NDRIILVTG-ASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN 89 (252)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence 466777555 5567777777654 33458999999999999888888766554566777887 443211 0 1
Q ss_pred CCCCCEEEEcCC
Q 016730 247 LNTVDRVLLDAP 258 (384)
Q Consensus 247 ~~~fD~VllDaP 258 (384)
.+..|.++.+|-
T Consensus 90 ~g~id~lv~nAg 101 (252)
T 3f1l_A 90 YPRLDGVLHNAG 101 (252)
T ss_dssp CSCCSEEEECCC
T ss_pred CCCCCEEEECCc
Confidence 257999998764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=89.31 E-value=2.1 Score=38.61 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=56.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-------CCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNT 249 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------~~~~ 249 (384)
.|.+||=.|+ +||.+.+++..+. ....|+.+|.++.+++.+.+.+...|. ++.++..|..+..... ..+.
T Consensus 6 ~~k~vlVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 6 RNATVAVIGA-GDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CSCEEEEECC-SSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 3566775554 5667777776553 345899999999999999988888764 5777889988753211 0047
Q ss_pred CCEEEEcCCCC
Q 016730 250 VDRVLLDAPCS 260 (384)
Q Consensus 250 fD~VllDaPCS 260 (384)
.|.++.+|-..
T Consensus 84 id~lv~nAg~~ 94 (252)
T 3h7a_A 84 LEVTIFNVGAN 94 (252)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEECCCcC
Confidence 89999877543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=89.30 E-value=4 Score=36.77 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.++.+..+++.+.+.+...|. ++.++..|..+..... ..+
T Consensus 28 ~~k~vlITG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 28 SGQVAVVTG-ASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 466777555 56777888777553 345899999999999999888887764 5777788988753211 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.|+..+-
T Consensus 106 ~id~lv~~Ag 115 (262)
T 3rkr_A 106 RCDVLVNNAG 115 (262)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.26 E-value=5.4 Score=36.32 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=74.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.|+ .||.+.+++..+- ....|+.++. +..+++.+.+.++..|. .+.++..|..+.... . ..
T Consensus 30 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGG-SRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4667776665 4667777776553 3347777754 56788888888887775 466778898875321 0 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+..|.++.+|-....+.+ ...+.++..... .-...+++.+...+ +.+|.+|+.+.+
T Consensus 108 g~iD~lvnnAg~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m----~~~g~iv~isS~ 167 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPL-------EETTVADFDEVMAVNFRAPFVAIRSASRHL----GDGGRIITIGSN 167 (271)
T ss_dssp SCCCEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHC----CTTCEEEEECCG
T ss_pred CCCcEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hcCCEEEEEeCh
Confidence 479999987743322211 122333333222 22234556666654 788999887654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=0.28 Score=47.08 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=42.5
Q ss_pred CCC-CCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC-CcccccCCCC
Q 016730 175 APQ-EKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPKVLGLNT 249 (384)
Q Consensus 175 ~~~-~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~ 249 (384)
.++ +|++||=.|+ |+.+. .++..++ .+|+++|.++++++.++ +++|.+.+. ..+-. .+.... ..
T Consensus 176 ~~~~~g~~VlV~Ga--G~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~---~~lGa~~vi--~~~~~~~~~~~~--~g 244 (357)
T 2cf5_A 176 GLKQPGLRGGILGL--GGVGHMGVKIAKAMG--HHVTVISSSNKKREEAL---QDLGADDYV--IGSDQAKMSELA--DS 244 (357)
T ss_dssp STTSTTCEEEEECC--SHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHH---TTSCCSCEE--ETTCHHHHHHST--TT
T ss_pred CCCCCCCEEEEECC--CHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH---HHcCCceee--ccccHHHHHHhc--CC
Confidence 566 9999999875 55444 4444443 48999999998877654 257876432 22111 111111 46
Q ss_pred CCEEEE
Q 016730 250 VDRVLL 255 (384)
Q Consensus 250 fD~Vll 255 (384)
||.|+-
T Consensus 245 ~D~vid 250 (357)
T 2cf5_A 245 LDYVID 250 (357)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999874
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=89.19 E-value=4.2 Score=38.14 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=57.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.|+ +||.+.+++..+- ....|++++.+..+++.+.+.+...|.. ++.++..|..+..... ..
T Consensus 7 ~~k~vlVTGa-s~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGG-ANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETT-TSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCC-chHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 4667776665 4667887777553 3458999999999999998888776652 5778889988753210 11
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++.+|-
T Consensus 86 g~id~lv~nAg 96 (319)
T 3ioy_A 86 GPVSILCNNAG 96 (319)
T ss_dssp CCEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899998774
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=1.1 Score=42.30 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=57.7
Q ss_pred CCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCC
Q 016730 175 APQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~ 247 (384)
.+++|++||=.|| .|+.+. .++...+ .+|++++.++++++.++ ++|.+.+ +..+..++. ....+
T Consensus 145 ~~~~g~~vlV~Ga-~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~~ga~~~--~~~~~~~~~~~~~~~~~~ 215 (334)
T 3qwb_A 145 HVKKGDYVLLFAA-AGGVGLILNQLLKMKG--AHTIAVASTDEKLKIAK----EYGAEYL--INASKEDILRQVLKFTNG 215 (334)
T ss_dssp CCCTTCEEEESST-TBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHTTT
T ss_pred cCCCCCEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCcEE--EeCCCchHHHHHHHHhCC
Confidence 5789999998874 233333 4444432 48999999999988664 4676533 222222221 11123
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..||.|+- |+|.. .+..+++.+ ++||++|..
T Consensus 216 ~g~D~vid---~~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 246 (334)
T 3qwb_A 216 KGVDASFD---SVGKD--------------------------TFEISLAAL----KRKGVFVSF 246 (334)
T ss_dssp SCEEEEEE---CCGGG--------------------------GHHHHHHHE----EEEEEEEEC
T ss_pred CCceEEEE---CCChH--------------------------HHHHHHHHh----ccCCEEEEE
Confidence 57998875 32211 245667775 999998864
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.08 E-value=4.6 Score=36.61 Aligned_cols=125 Identities=13% Similarity=0.203 Sum_probs=74.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.| |.||.+.+++..+. ....|+.++. +.+.++.+.+.++..|. ++.++..|..+..... ..
T Consensus 17 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTG-SGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESC-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 466777555 45667777776553 3347777665 57778888888887775 4667788988753210 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+..|.++.+|--...+-+ ...+.++.... ..-...+++.++..+ +++|++|+.+.+.
T Consensus 95 g~id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~----~~~g~iv~isS~~ 155 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHL-------KDVTEEEFDRVFSLNTRGQFFVAREAYRHL----TEGGRIVLTSSNT 155 (270)
T ss_dssp SCCCEEECCCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHC----CTTCEEEEECCTT
T ss_pred CCCCEEEECCCCCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hcCCeEEEEeCch
Confidence 478999886643322211 12233333322 222334556666664 7789998876543
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.05 E-value=6 Score=36.45 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc----eEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCccccc-------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG----LIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL------- 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g----~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~------- 245 (384)
.|.+||=.| |.||.+..++..+-..| .|+.++.+.++++.+.+.+...+ -..+.++..|..+.....
T Consensus 32 ~~k~~lVTG-as~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITG-ASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred CCCEEEEec-CCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 466777666 45677777776552222 89999999999998888876652 235777788988753210
Q ss_pred -CCCCCCEEEEcCC
Q 016730 246 -GLNTVDRVLLDAP 258 (384)
Q Consensus 246 -~~~~fD~VllDaP 258 (384)
..+..|.++.+|-
T Consensus 111 ~~~g~iD~lVnnAG 124 (287)
T 3rku_A 111 QEFKDIDILVNNAG 124 (287)
T ss_dssp GGGCSCCEEEECCC
T ss_pred HhcCCCCEEEECCC
Confidence 1147999998764
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.83 E-value=4.6 Score=35.89 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=68.7
Q ss_pred CceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
+.+||=.| |+||.+.+++..+ .....|+.++.+.++++.+.+.+ +. .+.++..|..+..... ..+.
T Consensus 3 ~k~vlVTG-as~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 3 LGHIIVTG-AGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL---GN-AVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp CCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GG-GEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cC-CceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 44566455 5567777777654 33458999999999888877665 22 4777788988743210 1147
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.|.++.+|--+..+-+ ...+.++... ...-...+++.++..+ .+.+|++|+.+.
T Consensus 78 id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~~~~iv~isS 135 (235)
T 3l6e_A 78 PELVLHCAGTGEFGPV-------GVYTAEQIRRVMESNLVSTILVAQQTVRLI---GERGGVLANVLS 135 (235)
T ss_dssp CSEEEEECCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTCEEEEEECC
T ss_pred CcEEEECCCCCCCCCh-------HhCCHHHHHHHHHHHhHHHHHHHHHHHHHH---HHcCCEEEEEeC
Confidence 8999987753222211 1123333322 2222334555666654 356777776543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=3.6 Score=36.20 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=53.6
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHH-HcCCceEEEEecCCCCcccc---cC-----CC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLH-RMGVTNTIVCNYDGNELPKV---LG-----LN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~-r~g~~~v~~~~~D~~~~~~~---~~-----~~ 248 (384)
+.+||=.| |.||.+.+++..+. ....|+.++.+.++++.+.+.+. ..|. .+.++..|..+.... .. .+
T Consensus 2 ~k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITG-ASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGV-EVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC-eEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 44566444 56777888777653 33589999999999988887775 4453 577778898875321 11 13
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++..|--
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78999987643
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.72 E-value=2.7 Score=38.35 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCcccc---c-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKV---L-----G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~---~-----~ 246 (384)
.|.+||=.| |.||.+.+++..+. ....|++++.++.+++.+.+.+...|.. ++.++..|..+.... . .
T Consensus 5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (280)
T 1xkq_A 5 SNKTVIITG-SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 83 (280)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence 355676555 56777777777543 3358999999999988887777665542 577778898875321 1 0
Q ss_pred CCCCCEEEEcCCC
Q 016730 247 LNTVDRVLLDAPC 259 (384)
Q Consensus 247 ~~~fD~VllDaPC 259 (384)
.+.+|.++.+|-.
T Consensus 84 ~g~iD~lv~nAg~ 96 (280)
T 1xkq_A 84 FGKIDVLVNNAGA 96 (280)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1478999987753
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.67 E-value=2.7 Score=37.18 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=52.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-c-------eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c--
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-G-------LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-- 245 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g-------~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-- 245 (384)
+.+|| +..|+||.+.+++..+-.. . .|++++.++.+++.+.+.+...+. ++.++..|..+.... .
T Consensus 2 ~k~vl-ITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~ 79 (244)
T 2bd0_A 2 KHILL-ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTH 79 (244)
T ss_dssp CEEEE-EETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEE-EECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCC-eeeEEEecCCCHHHHHHHHHH
Confidence 34566 4446788888877755322 3 799999999988888777765443 577778898874321 1
Q ss_pred ---CCCCCCEEEEcCC
Q 016730 246 ---GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ---~~~~fD~VllDaP 258 (384)
..+.+|.|+..+-
T Consensus 80 ~~~~~g~id~li~~Ag 95 (244)
T 2bd0_A 80 IVERYGHIDCLVNNAG 95 (244)
T ss_dssp HHHHTSCCSEEEECCC
T ss_pred HHHhCCCCCEEEEcCC
Confidence 1147999998664
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.38 Score=45.80 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=57.2
Q ss_pred hcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---CCC
Q 016730 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GLN 248 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~~~ 248 (384)
..++ +|++||-.|+|+ |..+..++..++ ..+|+++|.++++++.+++ + .+. ++..+..++.... .+.
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~----l-a~~--v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASG-AGPILVSDPNPYRLAFARP----Y-ADR--LVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHGGGTT----T-CSE--EECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----h-HHh--ccCcCccCHHHHHHHhcCC
Confidence 3456 899999999833 223334444432 2379999999999877654 3 332 2232222221110 134
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.||.|+- |+|. ...+..+++.+ ++||+++...
T Consensus 231 g~D~vid---~~g~-------------------------~~~~~~~~~~l----~~~G~iv~~g 262 (343)
T 2dq4_A 231 GVEVLLE---FSGN-------------------------EAAIHQGLMAL----IPGGEARILG 262 (343)
T ss_dssp CEEEEEE---CSCC-------------------------HHHHHHHHHHE----EEEEEEEECC
T ss_pred CCCEEEE---CCCC-------------------------HHHHHHHHHHH----hcCCEEEEEe
Confidence 7999975 2222 12356677776 9999988643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.59 E-value=1.3 Score=42.37 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=58.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
.++++|++||-.||+ |+.+..+++++. ....|++++.++++++.+ +.+|...+ +..+-.++. ....+.
T Consensus 166 ~~~~~g~~vlV~Gas-ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~~ga~~~--~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 166 ACVKAGESVLVHGAS-GGVGLAACQIARAYGLKILGTAGTEEGQKIV----LQNGAHEV--FNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp SCCCTTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHTTCSEE--EETTSTTHHHHHHHHHCTT
T ss_pred hCCCCcCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCChhHHHHH----HHcCCCEE--EeCCCchHHHHHHHHcCCC
Confidence 357889999988863 444444444332 124899999999988755 45676532 222222211 111234
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.|+-.+. . ..+..+++.+ ++||+++...
T Consensus 239 ~~D~vi~~~G---~--------------------------~~~~~~~~~l----~~~G~iv~~g 269 (351)
T 1yb5_A 239 GIDIIIEMLA---N--------------------------VNLSKDLSLL----SHGGRVIVVG 269 (351)
T ss_dssp CEEEEEESCH---H--------------------------HHHHHHHHHE----EEEEEEEECC
T ss_pred CcEEEEECCC---h--------------------------HHHHHHHHhc----cCCCEEEEEe
Confidence 7999875321 0 1245667775 9999988654
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=88.50 E-value=4.1 Score=35.95 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=52.9
Q ss_pred ceEEEeccCCChHHHHHHHHccC-CceEEE-EeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~-~g~V~a-~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
.+|| +..|+|+.+.+++..+-. ...|++ .+.++..++.+.+.++..+. ++.++..|..+.... . ..+.
T Consensus 2 k~vl-VTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 2 PVVV-VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 3455 455678888888876533 347877 48898888888777776664 567778898875321 1 1147
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.|+..+-.
T Consensus 80 id~li~~Ag~ 89 (244)
T 1edo_A 80 IDVVVNNAGI 89 (244)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987653
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=5.5 Score=35.77 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=54.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC-
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL- 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~- 247 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++++++.+.+.+...|. ++.++..|..+.... . ..
T Consensus 8 ~~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTG-GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 366777555 56777887776543 345899999999998887777766654 567778898875321 1 01
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++..+-
T Consensus 86 g~id~lv~~Ag 96 (260)
T 2ae2_A 86 GKLNILVNNAG 96 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899998764
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.41 E-value=7.3 Score=35.28 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=56.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+|+.+.+++..+. ....|++++.++.+++.+.+.+...|. ..+.++..|..+.... + ..
T Consensus 31 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 366677554 66778888877553 335899999999999888888877765 3577778898875321 1 01
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.|+..+.
T Consensus 110 g~iD~vi~~Ag 120 (279)
T 1xg5_A 110 SGVDICINNAG 120 (279)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999998664
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=88.32 E-value=3.4 Score=37.71 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.||.+.+++..+ .....|+.+|.++.+++.+.+.+...|. ++.++..|..+..... ..+
T Consensus 25 ~gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 466777555 5677777777755 3345899999999999998888887774 4677788988753210 124
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.++.+|-.
T Consensus 103 ~iD~lv~nAg~ 113 (271)
T 4ibo_A 103 DVDILVNNAGI 113 (271)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987743
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=88.30 E-value=4.1 Score=37.12 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.||.+.+++..+ .....|+.++.+..+++.+.+.+...|.. +.++..|..+.... . ..+
T Consensus 27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLE-GRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCC-CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc-EEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 466777444 6677777777654 33458999999999999998888887754 55667888874321 0 114
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
..|.++.+|--.
T Consensus 105 ~iD~lvnnAg~~ 116 (270)
T 3ftp_A 105 ALNVLVNNAGIT 116 (270)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 799999877533
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.29 E-value=5.6 Score=36.41 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=54.5
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
|.+||=.| |.||.+.+++..+- ....|+.++. +...++.+.+.+....-..+.++..|..+..... ..+
T Consensus 25 ~k~~lVTG-as~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 103 (281)
T 3v2h_A 25 TKTAVITG-STSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG 103 (281)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 56777555 55677777777553 3458999998 7788888877776654446778888988753210 124
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++.+|--
T Consensus 104 ~iD~lv~nAg~ 114 (281)
T 3v2h_A 104 GADILVNNAGV 114 (281)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987754
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.16 E-value=4.8 Score=36.91 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=55.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.++.+++.+.+.+...+-..+.++..|..+..... ..+
T Consensus 32 ~gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 110 (281)
T 4dry_A 32 EGRIALVTG-GGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA 110 (281)
T ss_dssp --CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 466777555 55777888777553 34589999999999998888877666555677789988753210 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.++.+|-
T Consensus 111 ~iD~lvnnAG 120 (281)
T 4dry_A 111 RLDLLVNNAG 120 (281)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998764
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.12 E-value=8.3 Score=35.47 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=73.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC--HHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~--~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~ 246 (384)
.|.+||=.| |.||.+.+++..+- ....|+.++.+ ....+.+.+.++..|. ++.++..|..+.... . .
T Consensus 48 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTG-GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 466777555 55777888877553 33578888886 4567777777777774 567778898874321 0 1
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+..|.++.++--.. ..+.+ ...+.++.... ..-...+++.++..+ +.+|++|+.+.
T Consensus 126 ~g~iD~lv~nAg~~~-----~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~----~~~g~Iv~isS 186 (294)
T 3r3s_A 126 LGGLDILALVAGKQT-----AIPEI-KDLTSEQFQQTFAVNVFALFWITQEAIPLL----PKGASIITTSS 186 (294)
T ss_dssp HTCCCEEEECCCCCC-----CCSSG-GGCCHHHHHHHHHHHTHHHHHHHHHHGGGC----CTTCEEEEECC
T ss_pred cCCCCEEEECCCCcC-----CCCCc-ccCCHHHHHHHHHHHhHHHHHHHHHHHHHh----hcCCEEEEECC
Confidence 147899998764221 11111 11233333222 222334566666654 77899988654
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=88.12 E-value=6.8 Score=35.79 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=54.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.+..+++.+.+.+... +. ++.++..|..+.... . ..
T Consensus 25 ~~k~vlITG-asggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 25 QGKVAFITG-GGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN-KVHAIQCDVRDPDMVQNTVSELIKVA 102 (302)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 356777555 56778888877553 3358999999999888777766554 43 577778898874311 0 12
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+.+|.|+..|-.
T Consensus 103 g~id~li~~Ag~ 114 (302)
T 1w6u_A 103 GHPNIVINNAAG 114 (302)
T ss_dssp CSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987653
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.10 E-value=0.24 Score=46.21 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=43.0
Q ss_pred CCCCceEEEecc-C-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcccccCCCCCCE
Q 016730 176 PQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~ca-g-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~fD~ 252 (384)
+++|++||-.|+ | .|..+..++..++ .+|+++|.++++++.++ ++|.+.+ +..+. .++.... ..+|.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~~ga~~~--~~~~~~~~~~~~~--~~~d~ 192 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPL----ALGAEEA--ATYAEVPERAKAW--GGLDL 192 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHH----HTTCSEE--EEGGGHHHHHHHT--TSEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----hcCCCEE--EECCcchhHHHHh--cCceE
Confidence 789999998886 2 2333444555443 48999999999887764 4787643 22211 1111112 46999
Q ss_pred EEE
Q 016730 253 VLL 255 (384)
Q Consensus 253 Vll 255 (384)
|+-
T Consensus 193 vid 195 (302)
T 1iz0_A 193 VLE 195 (302)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=88.07 E-value=5.5 Score=35.35 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=47.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc------cccc-CCCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVL-GLNTVD 251 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~------~~~~-~~~~fD 251 (384)
|.+||=.| |+||.+.+++..+...+.|++++.++.+++.+.+ ...+.++..|..+. .... ..+.+|
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~g~~v~~~~r~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id 77 (245)
T 3e9n_A 5 KKIAVVTG-ATGGMGIEIVKDLSRDHIVYALGRNPEHLAALAE------IEGVEPIESDIVKEVLEEGGVDKLKNLDHVD 77 (245)
T ss_dssp -CEEEEES-TTSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHT------STTEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred CCEEEEEc-CCCHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHh------hcCCcceecccchHHHHHHHHHHHHhcCCCC
Confidence 55666444 5677888888877666789999999988776654 23456666665432 1111 124789
Q ss_pred EEEEcCCC
Q 016730 252 RVLLDAPC 259 (384)
Q Consensus 252 ~VllDaPC 259 (384)
.++..|-.
T Consensus 78 ~lv~~Ag~ 85 (245)
T 3e9n_A 78 TLVHAAAV 85 (245)
T ss_dssp EEEECC--
T ss_pred EEEECCCc
Confidence 99987643
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=6 Score=36.03 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=54.8
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.+...|. ++.++..|..+.... . ..+
T Consensus 21 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 21 DSEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp TSCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 356777555 55777887777553 335899999999998888777776664 466778898864321 0 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.++..+-
T Consensus 99 ~iD~lv~~Ag 108 (277)
T 2rhc_B 99 PVDVLVNNAG 108 (277)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.03 E-value=0.15 Score=48.69 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=39.8
Q ss_pred EEEE-ecCCCCcccccCCCCCCEEEEcCCCCCC-CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 231 TIVC-NYDGNELPKVLGLNTVDRVLLDAPCSGT-GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 231 v~~~-~~D~~~~~~~~~~~~fD~VllDaPCSg~-G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
..++ ++|+......+..++||.|++|||.... +. |.. .......-...|..+.++| +|||.+
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~--------~~~----~~~~~~~~~~~l~~~~rvL----k~~G~i 102 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD--------WDD----HMDYIGWAKRWLAEAERVL----SPTGSI 102 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG--------GGT----CSSHHHHHHHHHHHHHHHE----EEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCC--------ccC----HHHHHHHHHHHHHHHHHHc----CCCeEE
Confidence 4566 8998765444455789999999998332 11 110 0111222345566666765 999998
Q ss_pred EEE
Q 016730 309 VYS 311 (384)
Q Consensus 309 vYs 311 (384)
+..
T Consensus 103 ~i~ 105 (319)
T 1eg2_A 103 AIF 105 (319)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.01 E-value=3.1 Score=36.63 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=47.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceE-EEEecCCC-CcccccCCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGN-ELPKVLGLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v-~~~~~D~~-~~~~~~~~~~fD~Vl 254 (384)
.|.+|| +..|+|+.+.+++..+-. ...|++++.++.++..+.. . ++ .++.+|.. .+...+ ..+|.|+
T Consensus 20 ~~~~il-VtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~---~~~~~~~~Dl~~~~~~~~--~~~D~vi 89 (236)
T 3e8x_A 20 QGMRVL-VVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R---GASDIVVANLEEDFSHAF--ASIDAVV 89 (236)
T ss_dssp -CCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T---TCSEEEECCTTSCCGGGG--TTCSEEE
T ss_pred CCCeEE-EECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C---CCceEEEcccHHHHHHHH--cCCCEEE
Confidence 467787 445678888888876533 3589999999888765543 2 34 66678876 223333 5799999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
..+.
T Consensus 90 ~~ag 93 (236)
T 3e8x_A 90 FAAG 93 (236)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8665
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=2.2 Score=37.91 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC-HHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~-~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+|| +.-|+|+.+.+++..+. ....|++++.+ +.+++.+.+.+...+. ++.++..|..+.... . ..
T Consensus 6 ~~k~vl-VTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVL-ITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGG-DAAFFAADLATSEACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 366777 44566888888887553 33589999998 7778777777766553 577778898875321 1 01
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.|+..+.
T Consensus 84 g~id~vi~~Ag 94 (258)
T 3afn_B 84 GGIDVLINNAG 94 (258)
T ss_dssp SSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999998764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=88.00 E-value=4.4 Score=35.62 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=65.6
Q ss_pred EEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c--CCCCCCEEEE
Q 016730 182 VIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L--GLNTVDRVLL 255 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~--~~~~fD~Vll 255 (384)
||=.| |+||.+.+++..+. ....|+.++.++.+++.+.+.+ + .++.++..|..+.... . -...+|.++.
T Consensus 4 vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 4 IVITG-ASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL---S-NNVGYRARDLASHQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp EEEES-TTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC---S-SCCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred EEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---h-hccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence 44344 55777887777553 3358999999998887665543 3 3456667888764221 1 1145699988
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+.-+..+-+ ...+.++... ...-...+++.++..+ .+.+|.+|+.+.
T Consensus 79 ~Ag~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~~~~iv~isS 130 (230)
T 3guy_A 79 SAGSGYFGLL-------QEQDPEQIQTLIENNLSSAINVLRELVKRY---KDQPVNVVMIMS 130 (230)
T ss_dssp CCCCCCCSCG-------GGSCHHHHHHHHHHHHHHHHHHHHHHHHHH---TTSCCEEEEECC
T ss_pred eCCcCCCCcc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCeEEEEee
Confidence 6643222211 1223333322 2233344566666655 355667776554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.92 E-value=4.2 Score=37.08 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=54.8
Q ss_pred CceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
|.+||=.| |.||.+.+++..+ .....|+.++.+..+++.+.+.++..|. .+.++..|..+..... ..+.
T Consensus 4 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 4 DKVILITG-ASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 55666555 4567777777655 3345899999999999999888887764 4667778988743210 1147
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
.|.++.+|-
T Consensus 82 iD~lVnnAG 90 (264)
T 3tfo_A 82 IDVLVNNAG 90 (264)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 999998764
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.89 E-value=6.5 Score=35.18 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=52.9
Q ss_pred ceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTV 250 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~f 250 (384)
.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.+...|. ++.++..|..+.... . ..+.+
T Consensus 3 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 3 KVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 4555444 56777888777553 335899999999998888777776664 466777898875321 1 11479
Q ss_pred CEEEEcCC
Q 016730 251 DRVLLDAP 258 (384)
Q Consensus 251 D~VllDaP 258 (384)
|.++..+-
T Consensus 81 d~lv~nAg 88 (256)
T 1geg_A 81 DVIVNNAG 88 (256)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=87.81 E-value=1.5 Score=41.35 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=57.2
Q ss_pred cCCCCCceEEEecc--CCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCC
Q 016730 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~ca--gpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~ 247 (384)
..+++|++||-.|+ |-|..+..++... ..+|+++|.++++++.+++ +|.+.+ +..+..+.. .....
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~--~d~~~~~~~~~i~~~~~~ 212 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHT--INYSTQDFAEVVREITGG 212 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHHTT
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEE--EECCCHHHHHHHHHHhCC
Confidence 35788999998875 2233333444433 2589999999998887754 576532 222212211 11122
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..+|.|+-. +|.. .+..+++.+ ++||+++..
T Consensus 213 ~~~d~vi~~---~g~~--------------------------~~~~~~~~l----~~~G~iv~~ 243 (333)
T 1wly_A 213 KGVDVVYDS---IGKD--------------------------TLQKSLDCL----RPRGMCAAY 243 (333)
T ss_dssp CCEEEEEEC---SCTT--------------------------THHHHHHTE----EEEEEEEEC
T ss_pred CCCeEEEEC---CcHH--------------------------HHHHHHHhh----ccCCEEEEE
Confidence 469998853 2321 245677775 999988754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.68 E-value=0.67 Score=43.60 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=58.1
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
.++++|++||-.|++ |+.+..++++... ..+|+++|.++++++.+++ +|...+ +..+-.+.. ......
T Consensus 136 ~~~~~g~~vlV~Ga~-ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 136 YEIKPDEQFLFHAAA-GGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAWQV--INYREEDLVERLKEITGGK 208 (327)
T ss_dssp SCCCTTCEEEESSTT-BHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHTTTC
T ss_pred hCCCCCCEEEEECCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEE--EECCCccHHHHHHHHhCCC
Confidence 357889999988743 4444444443321 2489999999999887754 576532 222211211 111224
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+|.|+-. +| +- .+..+++.+ ++||+++..
T Consensus 209 ~~D~vi~~---~g-~~-------------------------~~~~~~~~l----~~~G~iv~~ 238 (327)
T 1qor_A 209 KVRVVYDS---VG-RD-------------------------TWERSLDCL----QRRGLMVSF 238 (327)
T ss_dssp CEEEEEEC---SC-GG-------------------------GHHHHHHTE----EEEEEEEEC
T ss_pred CceEEEEC---Cc-hH-------------------------HHHHHHHHh----cCCCEEEEE
Confidence 69998763 33 21 246677776 999998754
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=87.66 E-value=0.53 Score=44.40 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=56.7
Q ss_pred CCCCCc-eEEEecc-C-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEe-cCCCCcccccCCCCC
Q 016730 175 APQEKE-RVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTV 250 (384)
Q Consensus 175 ~~~~g~-~VLD~ca-g-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~-~D~~~~~~~~~~~~f 250 (384)
++++|+ +||=.|| | -|..+..++..++ .+|++++.++++++.++ ++|.+.+.-.. .|...... .....+
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~----~lGa~~v~~~~~~~~~~~~~-~~~~~~ 218 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLK----QLGASEVISREDVYDGTLKA-LSKQQW 218 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHH----HHTCSEEEEHHHHCSSCCCS-SCCCCE
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCcEEEECCCchHHHHHH-hhcCCc
Confidence 467886 8998876 2 2333445555543 47999999988887764 46876432211 11111111 122468
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|+- |+|. ..+..+++.+ ++||+++..
T Consensus 219 d~vid---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 246 (330)
T 1tt7_A 219 QGAVD---PVGG--------------------------KQLASLLSKI----QYGGSVAVS 246 (330)
T ss_dssp EEEEE---SCCT--------------------------HHHHHHHTTE----EEEEEEEEC
T ss_pred cEEEE---CCcH--------------------------HHHHHHHHhh----cCCCEEEEE
Confidence 98864 2221 1346677776 999998754
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.62 E-value=3.5 Score=37.69 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=53.6
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+++|.++.+++.+.+.+...| ++.++..|..+.... . ..+
T Consensus 28 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (276)
T 2b4q_A 28 AGRIALVTG-GSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGARRLAQALGELSA 104 (276)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 366777555 56777887777553 33589999999988887776665444 577778888874221 1 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++..|--
T Consensus 105 ~iD~lvnnAg~ 115 (276)
T 2b4q_A 105 RLDILVNNAGT 115 (276)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987743
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=87.45 E-value=0.53 Score=44.99 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=58.4
Q ss_pred cCCCCC--ceEEEeccCCChHHHHHHHHccC-Cc-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----ccc
Q 016730 174 LAPQEK--ERVIDMAAAPGGKTTYIAALMKN-TG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVL 245 (384)
Q Consensus 174 L~~~~g--~~VLD~cagpGgkt~~la~~~~~-~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~ 245 (384)
..+++| ++||-.|| .|+.+..+++++.. .. +|+++|.++++++.+++ .+|...+ +..+..++. ...
T Consensus 154 ~~~~~g~~~~vlI~Ga-sggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~---~~g~~~~--~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGA-AGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTS---ELGFDAA--INYKKDNVAEQLRESC 227 (357)
T ss_dssp SCCCTTSCCEEEESST-TBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---TSCCSEE--EETTTSCHHHHHHHHC
T ss_pred cCCCCCCccEEEEECC-CcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH---HcCCceE--EecCchHHHHHHHHhc
Confidence 357889 99998876 34555554444332 23 89999999988876653 2676532 222212211 111
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
. +.+|.|+-.+ |. ..+..+++.+ ++||+++..
T Consensus 228 ~-~~~d~vi~~~---G~--------------------------~~~~~~~~~l----~~~G~iv~~ 259 (357)
T 2zb4_A 228 P-AGVDVYFDNV---GG--------------------------NISDTVISQM----NENSHIILC 259 (357)
T ss_dssp T-TCEEEEEESC---CH--------------------------HHHHHHHHTE----EEEEEEEEC
T ss_pred C-CCCCEEEECC---CH--------------------------HHHHHHHHHh----ccCcEEEEE
Confidence 1 2689887532 20 1356778876 999998854
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=87.44 E-value=2.5 Score=38.03 Aligned_cols=81 Identities=21% Similarity=0.143 Sum_probs=55.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHc--CCceEEEEecCCCCccccc--------C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRM--GVTNTIVCNYDGNELPKVL--------G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~--g~~~v~~~~~D~~~~~~~~--------~ 246 (384)
.|.+||=.| |.||.+.+++..+. ....|+.++.+..+++.+.+.+... +...+.++..|..+..... .
T Consensus 6 ~~k~~lVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 6 QKGLAIITG-ASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCEEEEES-TTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 355677555 45667777776543 2358999999999999988888776 3346777788988743210 1
Q ss_pred CCCCCEEEEcCCC
Q 016730 247 LNTVDRVLLDAPC 259 (384)
Q Consensus 247 ~~~fD~VllDaPC 259 (384)
.+..|.++.+|--
T Consensus 85 ~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 85 YGAVDILVNAAAM 97 (250)
T ss_dssp HCCEEEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1478999987753
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=87.44 E-value=6.3 Score=36.77 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC------------HHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~------------~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
.|.+||=.| |.||.+.+++..+- ....|+.+|.+ .++++.+.+.+...|. .+.++..|..+....
T Consensus 45 ~gk~~lVTG-as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 45 QGKVAFITG-AARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLASL 122 (317)
T ss_dssp TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 466777555 55677777776553 34589999886 7788887777777765 467778898875321
Q ss_pred ---c-----CCCCCCEEEEcCCCCCC
Q 016730 245 ---L-----GLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 245 ---~-----~~~~fD~VllDaPCSg~ 262 (384)
. ..+.+|.++.+|-.+..
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~~~~ 148 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGISNQ 148 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 0 11479999997754433
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=87.43 E-value=0.51 Score=45.42 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=43.0
Q ss_pred CCC-CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC-CcccccCCCCCC
Q 016730 175 APQ-EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN-ELPKVLGLNTVD 251 (384)
Q Consensus 175 ~~~-~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~fD 251 (384)
.++ +|++||=.|+ |+.+..++++... ..+|++++.++++++.++ +++|.+.+ +..+-. .+.... +.+|
T Consensus 183 ~~~~~g~~VlV~Ga--G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~---~~lGa~~v--~~~~~~~~~~~~~--~~~D 253 (366)
T 1yqd_A 183 GLDEPGKHIGIVGL--GGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL---KNFGADSF--LVSRDQEQMQAAA--GTLD 253 (366)
T ss_dssp TCCCTTCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH---HTSCCSEE--EETTCHHHHHHTT--TCEE
T ss_pred CcCCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HhcCCceE--EeccCHHHHHHhh--CCCC
Confidence 566 8999999875 5555544444322 248999999998877654 25676533 222111 111111 4699
Q ss_pred EEEE
Q 016730 252 RVLL 255 (384)
Q Consensus 252 ~Vll 255 (384)
+|+-
T Consensus 254 ~vid 257 (366)
T 1yqd_A 254 GIID 257 (366)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.28 E-value=1 Score=42.04 Aligned_cols=79 Identities=8% Similarity=0.048 Sum_probs=51.3
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~~~~fD~Vl 254 (384)
+.+|| +.-|+|+.+.++++.+.. ...|++++.+........+.+....-.++.++.+|..+.... .....+|.|+
T Consensus 5 ~~~vl-VTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 5 KGTIL-VTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SCEEE-EETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CcEEE-EecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 45677 555788999988876543 358999998766555554444443223567778898875321 2113789999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
..+.
T Consensus 84 h~A~ 87 (341)
T 3enk_A 84 HFAA 87 (341)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 8664
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=7 Score=34.81 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=54.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+|+.+.+++..+. ....|++++. ++..++.+.+.+...+. ++.++..|..+.... . ..
T Consensus 6 ~~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 6 EGKVVVITG-SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356677444 56788888877543 3458999999 88888888777776653 567778898864321 1 01
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+.+|.|+..+..
T Consensus 84 g~id~li~~Ag~ 95 (261)
T 1gee_A 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999987643
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.99 E-value=5 Score=36.67 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=68.4
Q ss_pred CCceEEEeccCC-ChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.|++. ||.+.+++..+. ....|++++.++..-+.+.+.....| ++.++..|..+.... . ..
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLEENW 97 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467888788763 788888877553 34589999988752222222222333 255667888864321 0 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.+|.++..|-.....-+. .| ....+.++..... .-...+++.+...+ .+.+|++|+.+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~-~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~~g~iv~isS 161 (285)
T 2p91_A 98 GSLDIIVHSIAYAPKEEFK-GG--VIDTSREGFKIAMDISVYSLIALTRELLPLM---EGRNGAIVTLSY 161 (285)
T ss_dssp SCCCEEEECCCCCCGGGGS-SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGG---TTSCCEEEEEEC
T ss_pred CCCCEEEECCCCCCcccCC-CC--cccCCHHHHHHHHHHhhHHHHHHHHHHHHHH---HHcCCEEEEEcc
Confidence 4789999877432210000 01 1122333333222 22334555666654 236788887653
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=14 Score=33.83 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=44.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEe-CCHHHHHHHHHHHH-HcCCceEEEEecCCCCcc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANE-MKASRLKSLTANLH-RMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D-~~~~rl~~l~~n~~-r~g~~~v~~~~~D~~~~~ 242 (384)
.|.+||=.| |.||.+.+++..+- ....|+.++ .++.+++.+.+.+. ..| .++.++..|..+..
T Consensus 8 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 8 TVPVALVTG-AAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA 73 (291)
T ss_dssp CCCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCcc
Confidence 355677555 55777888777553 345899999 99999888887776 555 35677788887755
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=86.88 E-value=4.9 Score=36.72 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=55.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.++.++.+++.+.+.+...|. .+.++..|..+.... . ..+
T Consensus 23 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 23 RPQTAFVTG-VSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp --CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356777555 55667777776543 345899999999999988888877664 467778898875321 0 114
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
..|.++.+|-..
T Consensus 101 ~id~lv~nAg~~ 112 (279)
T 3sju_A 101 PIGILVNSAGRN 112 (279)
T ss_dssp SCCEEEECCCCC
T ss_pred CCcEEEECCCCC
Confidence 789999877543
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=2.6 Score=39.88 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=52.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC--c-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCCCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT--G-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVD 251 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~--g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~~fD 251 (384)
.|.+|| +..|+|+.+.+++..+... . .|++++.++.+...+.+.+. -.++.++.+|.++... .+ ..+|
T Consensus 20 ~~k~vl-VTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~--~~~D 93 (344)
T 2gn4_A 20 DNQTIL-ITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN---DPRMRFFIGDVRDLERLNYAL--EGVD 93 (344)
T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC---CTTEEEEECCTTCHHHHHHHT--TTCS
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc---CCCEEEEECCCCCHHHHHHHH--hcCC
Confidence 366777 5557799999888765433 3 89999999988776655442 2457788899887532 23 4689
Q ss_pred EEEEcCC
Q 016730 252 RVLLDAP 258 (384)
Q Consensus 252 ~VllDaP 258 (384)
.|+..+.
T Consensus 94 ~Vih~Aa 100 (344)
T 2gn4_A 94 ICIHAAA 100 (344)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9998664
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.76 E-value=6.2 Score=36.20 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=55.0
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+|.+||=.| |.||.+.+++..+ .....|+.+|.+..+++.+.+.+...|. .+.++..|..+.... . ..+
T Consensus 27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 27 PSPVALITG-AGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGG-QAIALEADVSDELQMRNAVRDLVLKFG 104 (283)
T ss_dssp CCCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777555 5566777777654 3345899999999999888887766554 467778898875221 0 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.++.+|--
T Consensus 105 ~iD~lVnnAg~ 115 (283)
T 3v8b_A 105 HLDIVVANAGI 115 (283)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987753
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=86.72 E-value=6.1 Score=34.69 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=52.4
Q ss_pred eEEEeccCCChHHHHHHHHccCC-ceEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~-g~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~f 250 (384)
+|| +.-|+|+.+.+++..+... ..|+++ +.++.+++.+.+.+...|.....++..|..+..... ..+.+
T Consensus 3 ~vl-ITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 2ph3_A 3 KAL-ITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGL 81 (245)
T ss_dssp EEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTCC
T ss_pred EEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCCC
Confidence 455 4456788888888766443 478887 889988888877777766543332678887753210 01478
Q ss_pred CEEEEcCCC
Q 016730 251 DRVLLDAPC 259 (384)
Q Consensus 251 D~VllDaPC 259 (384)
|.|+..+..
T Consensus 82 d~li~~Ag~ 90 (245)
T 2ph3_A 82 DTLVNNAGI 90 (245)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999987754
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.71 E-value=6.6 Score=35.61 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=54.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC-
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL- 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~- 247 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.+...|. ++.++..|..+.... . ..
T Consensus 20 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTG-GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 366777555 56777777777553 335899999999988888777766664 466778898875321 1 11
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++..+-
T Consensus 98 g~id~lv~nAg 108 (273)
T 1ae1_A 98 GKLNILVNNAG 108 (273)
T ss_dssp SCCCEEEECCC
T ss_pred CCCcEEEECCC
Confidence 57899998764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.64 E-value=7.7 Score=35.02 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=55.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccc---c-CCCCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKV---L-GLNTVD 251 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~---~-~~~~fD 251 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.+..+++.+.+.+...+. ..+..+..|..+.... . ..+..|
T Consensus 9 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 87 (267)
T 3t4x_A 9 KGKTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD 87 (267)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 366777555 55777777777543 345899999999999888887776643 3466777888764211 0 125799
Q ss_pred EEEEcCCC
Q 016730 252 RVLLDAPC 259 (384)
Q Consensus 252 ~VllDaPC 259 (384)
.++.+|--
T Consensus 88 ~lv~nAg~ 95 (267)
T 3t4x_A 88 ILINNLGI 95 (267)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99987643
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.51 E-value=7.2 Score=35.28 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC------------HHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~------------~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.+ .++++.+.+.+...|. .+.++..|..+....
T Consensus 12 ~gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 12 TGKVAFITG-AARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRESL 89 (278)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHH
Confidence 466777555 55677777777553 34589999987 8888888887777774 577778998875321
Q ss_pred ---c-----CCCCCCEEEEcCC
Q 016730 245 ---L-----GLNTVDRVLLDAP 258 (384)
Q Consensus 245 ---~-----~~~~fD~VllDaP 258 (384)
. ..+..|.++.+|-
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg 111 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAG 111 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 1147999998764
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=86.46 E-value=7.2 Score=35.00 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=52.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.+.++++.+.+.+ +- .+.++..|..+.... . ..+
T Consensus 7 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 7 EGKSALITG-SARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GP-AAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CT-TEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CC-CceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 466777555 56777888877553 3458999999998877665544 32 467778898875321 1 114
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
.+|.++..|--+
T Consensus 82 ~id~lv~~Ag~~ 93 (259)
T 4e6p_A 82 GLDILVNNAALF 93 (259)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 799999977543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.18 E-value=2.2 Score=40.60 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=43.9
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~ 248 (384)
.++++|++||-.|+ .|+.+..++++.. ...+|+++|.++++++.++ .+|.+.+ +..+..++. ....+.
T Consensus 158 ~~~~~g~~vlV~Ga-~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~~g~~~~--~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 158 GNVQAGDYVLIHAG-LSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE----KLGAAAG--FNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp SCCCTTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTTTS
T ss_pred cCCCCCCEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCcEE--EecCChHHHHHHHHHhcCC
Confidence 35788999997764 3444444444332 1248999999999988763 4576532 222222211 111224
Q ss_pred CCCEEEE
Q 016730 249 TVDRVLL 255 (384)
Q Consensus 249 ~fD~Vll 255 (384)
.+|.|+-
T Consensus 231 ~~d~vi~ 237 (354)
T 2j8z_A 231 GVNLILD 237 (354)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 6999876
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=86.14 E-value=3 Score=36.96 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=51.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+|+.+.+++..+.. ...|+++ +.++..++.+.+.+...+. ++.++..|..+.... . ..
T Consensus 4 ~~~~vlItG-asggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTG-SSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGI-NVVVAKGDVKNPEDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTC-CEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 356677444 568888888775533 3478888 6677777777777766664 467778898875321 1 01
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+.+|.|+..+..
T Consensus 82 ~~~d~vi~~Ag~ 93 (247)
T 2hq1_A 82 GRIDILVNNAGI 93 (247)
T ss_dssp SCCCEEEECC--
T ss_pred CCCCEEEECCCC
Confidence 378999987643
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=86.12 E-value=1 Score=42.77 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=42.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc----cCCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGLNTVD 251 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~----~~~~~fD 251 (384)
++|+.++=+.+|.|+.+..++++... ..+|+++|.++++++.++ ++|.+.+ +..+..++... ..+..+|
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~~Ga~~~--~~~~~~~~~~~v~~~~~~~g~D 235 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK----DIGAAHV--LNEKAPDFEATLREVMKAEQPR 235 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH----HHTCSEE--EETTSTTHHHHHHHHHHHHCCC
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HcCCCEE--EECCcHHHHHHHHHHhcCCCCc
Confidence 55643344666777766655544322 248999999999988775 4787543 23332222111 1113699
Q ss_pred EEEE
Q 016730 252 RVLL 255 (384)
Q Consensus 252 ~Vll 255 (384)
+|+-
T Consensus 236 ~vid 239 (349)
T 3pi7_A 236 IFLD 239 (349)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=86.11 E-value=8.7 Score=35.38 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=54.4
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCC------------HHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~------------~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
.|.+||=.|++ ||.+.+++..+ .....|+++|.+ .++++.+.+.++..|. ++.++..|..+....
T Consensus 27 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 27 EGKVAFITGAA-RGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDVRDFDAM 104 (299)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHH
Confidence 46677766654 56677777654 334589999987 7888888888877775 577778998875321
Q ss_pred c--------CCCCCCEEEEcCC
Q 016730 245 L--------GLNTVDRVLLDAP 258 (384)
Q Consensus 245 ~--------~~~~fD~VllDaP 258 (384)
. ..+..|.++.+|-
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 0 1147999998764
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=86.03 E-value=5.3 Score=35.91 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=54.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.++++++.+.+.++..+. .+.++..|..+..... ..+
T Consensus 5 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 5 KEKVVIITG-GSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPG-QILTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTT-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356677445 56777887777553 345899999999999888877765553 5777788988753210 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.+|-
T Consensus 83 ~id~lv~nAg 92 (257)
T 3imf_A 83 RIDILINNAA 92 (257)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7899998764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=86.02 E-value=8.8 Score=34.04 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cC-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG-----LN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~-----~~ 248 (384)
.+.+||=.| |+|+.+.+++..+. ....|++++.++.+++.+.+.++..+. ++.++..|..+.... .. .+
T Consensus 12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH-DVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 366777555 56788888887553 345899999999988888777776654 477778898875321 10 13
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+..+.
T Consensus 90 ~id~vi~~Ag 99 (260)
T 3awd_A 90 RVDILVACAG 99 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998764
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.02 E-value=7.6 Score=35.21 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeC-------------CHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEM-------------KASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~-------------~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
.|.+||=.| |.||.+.+++..+ .....|+.+|. +..+++.+.+.+...+. .+.++..|..+...
T Consensus 10 ~~k~~lVTG-as~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 10 EGRVAFITG-AARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVDTRDFDR 87 (277)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHH
Confidence 466777555 4566677777654 33458999998 78888888777777664 46777889887532
Q ss_pred cc--------CCCCCCEEEEcCCC
Q 016730 244 VL--------GLNTVDRVLLDAPC 259 (384)
Q Consensus 244 ~~--------~~~~fD~VllDaPC 259 (384)
.. ..+..|.++.+|--
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 11 01479999987743
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=86.02 E-value=5.8 Score=35.86 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=71.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeC---CHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEM---KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~---~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------- 245 (384)
.|.+||=.|+ .||.+.+++..+-.. ..|+.++. +.++++.+.+.+...|. ++.++..|..+.....
T Consensus 10 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGG-IKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 4667775555 566788888766443 47888765 45566666666665554 5777788988753210
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..+..|.++.+|-....+-+ ...+.++.... ..-...+++.++..+ +++|++|+.+.
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m----~~~g~iv~isS 148 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPI-------VETSEAEFDAMDTINNKVAYFFIKQAAKHM----NPNGHIITIAT 148 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCG-------GGCCHHHHHHHHHHHHHHHHHHHHHHHTTE----EEEEEEEEECC
T ss_pred HcCCCCEEEECCCCCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHhh----cCCCEEEEEec
Confidence 11478999987643222211 12234443322 222334555566654 77899988754
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.95 E-value=10 Score=34.30 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=55.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC------------HHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~------------~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
.|.+||=.|+ .||.+.+++..+- ....|+.+|.+ .+.++.+.+.+...|. .+.++..|..+....
T Consensus 9 ~~k~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 9 EGKTALITGG-ARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGR-RCISAKVDVKDRAAL 86 (281)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHH
Confidence 4667775554 5677777777553 34589999986 7778877777777774 467778898875321
Q ss_pred ---c-----CCCCCCEEEEcCCCC
Q 016730 245 ---L-----GLNTVDRVLLDAPCS 260 (384)
Q Consensus 245 ---~-----~~~~fD~VllDaPCS 260 (384)
. ..+..|.++.+|--+
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~ 110 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGIS 110 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCC
Confidence 1 014799999877543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=85.95 E-value=6.6 Score=35.40 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=49.2
Q ss_pred ceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
.+||=.| | |..+.+++..+.. ...|++++.++.....+.. .++.++.+|..++. . ..+|.|+.-+.
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~--~--~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS--L--DGVTHLLISTA 72 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC--C--TTCCEEEECCC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc--c--CCCCEEEECCC
Confidence 5788888 5 9999999886643 3489999999877655432 24677788988855 3 67999998654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.91 E-value=4.4 Score=35.57 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=48.4
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+|| +..|+|+.+.+++..+. ....|++++.++.+++.+.+.+ + ++.++..|..+.... . ..+.
T Consensus 5 ~k~vl-VtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 5 KGAVL-ITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL---E--GALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CCEEE-ESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T--TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---h--hceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 44566 45567888888887653 3358999999988877665433 2 456677888864321 0 0147
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 79 id~li~~Ag 87 (234)
T 2ehd_A 79 LSALVNNAG 87 (234)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998664
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.78 E-value=9.6 Score=33.99 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=. -|+||.+.+++..+. ....|++++.++.+++.+.+.+ +. .+.++..|..+.... . ..+
T Consensus 5 ~~k~vlVT-Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (253)
T 1hxh_A 5 QGKVALVT-GGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GE-RSMFVRHDVSSEADWTLVMAAVQRRLG 79 (253)
T ss_dssp TTCEEEET-TTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CT-TEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEe-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35566644 456778888877553 3358999999998877665544 43 467778898875321 0 014
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHH----HHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQ----KQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q----~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+|.++..+-....+-+ ...+.++.......- ..+.+.++..+ .+.||++|+.+.
T Consensus 80 ~id~lv~~Ag~~~~~~~-------~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~---~~~~g~iv~isS 138 (253)
T 1hxh_A 80 TLNVLVNNAGILLPGDM-------ETGRLEDFSRLLKINTESVFIGCQQGIAAM---KETGGSIINMAS 138 (253)
T ss_dssp SCCEEEECCCCCCCBCT-------TTCCHHHHHHHHHHHTHHHHHHHHHHHHHH---TTTCEEEEEECC
T ss_pred CCCEEEECCCCCCCCCc-------ccCCHHHHHHHHHhhcHHHHHHHHHHHHHH---HHcCCEEEEEcc
Confidence 68999987643322211 122334333322221 22344455544 244588887653
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.71 E-value=4.4 Score=36.90 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+ ..+..+++.+.+.+...|. .+.++..|..+..... ..
T Consensus 26 ~~k~~lVTG-as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 26 TNKVAIVTG-ASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp -CCEEEEES-CSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 466777555 55667777776543 23466665 5577788888888877765 4667788988753211 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+..|.++.+|--...+.+ ...+.++... ...-...+++.++..+ +.+|++|+.+.
T Consensus 104 g~iD~lvnnAG~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~----~~~g~iv~isS 162 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTI-------AETGDAVFDRVIAVNLKGTFNTLREAAQRL----RVGGRIINMST 162 (267)
T ss_dssp SCEEEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHHHHHHHHHHHHHHHE----EEEEEEEEECC
T ss_pred CCCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCeEEEEeC
Confidence 478999987643222211 1223333322 2222334566666664 77899988764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=85.68 E-value=7 Score=35.72 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=56.9
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+|..+|=.|++. |.+..++..+ .....|+.+|.++++++.+.+.++..|.+ +..+..|..+..... ..+
T Consensus 6 ~gKvalVTGas~-GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~-~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGS-GIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKE-VLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC-EEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 477777666555 4566666544 34568999999999999999999988864 666788998753210 126
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
+.|.++-+|-
T Consensus 84 ~iDiLVNNAG 93 (254)
T 4fn4_A 84 RIDVLCNNAG 93 (254)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7999888764
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.62 E-value=11 Score=34.36 Aligned_cols=122 Identities=15% Similarity=0.141 Sum_probs=69.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.||.+.+++..+. ....|+.+|.++.+++.+.+. ++. .+.++..|..+.... . ..+
T Consensus 26 ~~k~vlVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 26 NQRVCIVTG-GGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IGS-KAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HCT-TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 366777555 55677777777553 345899999999887766554 343 466777898874321 0 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+|.++.+|--+..+-+. ..+.++... ...-...+++.++..+.. +.+|++|+.+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~~~g~iv~isS 160 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVV-------TIPEETWDRIMSVNVKGIFLCSKYVIPVMRR--NGGGSIINTTS 160 (277)
T ss_dssp CCCEEEECCCCCCCBCTT-------TSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TTCEEEEEECC
T ss_pred CCCEEEECCCcCCCCCcc-------cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH--cCCcEEEEECc
Confidence 789999977533333221 123333322 122223345555555410 24678887654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=85.53 E-value=13 Score=33.99 Aligned_cols=124 Identities=11% Similarity=0.142 Sum_probs=71.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHH-HHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKAS-RLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~-rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.|+ .||.+.+++..+. ....|+.++.+.. ..+.+.+.++..|. .+.++..|..+.... . ..
T Consensus 46 ~gk~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGG-DSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4677776664 5667777777553 3358889998765 45555666666664 467778898875321 0 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.+|.++.++--... ... ....+.++... ...-...+++.++..+ +.+|++|+.+.
T Consensus 124 g~iD~lvnnAg~~~~-----~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~----~~~g~iv~isS 183 (291)
T 3ijr_A 124 GSLNILVNNVAQQYP-----QQG-LEYITAEQLEKTFRINIFSYFHVTKAALSHL----KQGDVIINTAS 183 (291)
T ss_dssp SSCCEEEECCCCCCC-----CSS-GGGCCHHHHHHHHHHHTHHHHHHHHHHHTTC----CTTCEEEEECC
T ss_pred CCCCEEEECCCCcCC-----CCC-cccCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hhCCEEEEEec
Confidence 478999987642211 100 11123333332 2223344566666654 78899887654
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.38 E-value=13 Score=34.81 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=45.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEe-CCHHHHHHHHHHHH-HcCCceEEEEecCCCCcc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANE-MKASRLKSLTANLH-RMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D-~~~~rl~~l~~n~~-r~g~~~v~~~~~D~~~~~ 242 (384)
.|.+|| +.-|.||.+.+++..+. ....|+.++ .++.+++.+.+.+. ..| .++.++..|..+..
T Consensus 45 ~~k~~l-VTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~d~~ 110 (328)
T 2qhx_A 45 TVPVAL-VTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA 110 (328)
T ss_dssp CCCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC-CeEEEEEeeCCCch
Confidence 355677 44556778888877553 345899999 99999888887776 455 35777788888754
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=85.32 E-value=5.1 Score=36.53 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |.||.+.+++..+-. ...|+.++.+..+++.+.+.+.. .| .++.++..|..+.... . ..
T Consensus 26 ~~k~~lVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 26 RDKVAFITG-GGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLSMDVRAPPAVMAAVDQALKEF 103 (277)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 466777555 456778887776543 34899999999988877766644 34 3577778898875221 0 11
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.+|-
T Consensus 104 g~id~lv~nAg 114 (277)
T 4fc7_A 104 GRIDILINCAA 114 (277)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 47999998764
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.30 E-value=7.5 Score=34.44 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=51.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-CCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-~~~~fD~ 252 (384)
++.+||=.| |+||.+.+++..+. ....|+.++.+..+++.+.+.+. .++.+...|..+.... . ..+..|.
T Consensus 13 ~~k~vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 13 TGKTSLITG-ASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 567788555 56777888777553 33589999999998887766542 3567777888764221 1 1247999
Q ss_pred EEEcCCCC
Q 016730 253 VLLDAPCS 260 (384)
Q Consensus 253 VllDaPCS 260 (384)
++..|...
T Consensus 88 li~~Ag~~ 95 (249)
T 3f9i_A 88 LVCNAGIT 95 (249)
T ss_dssp EEECCC--
T ss_pred EEECCCCC
Confidence 99977543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=85.30 E-value=3.9 Score=37.15 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=68.1
Q ss_pred CCceEEEeccC-CChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAA-PGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cag-pGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.|++ +||.+.+++..+.. ...|+.++.++..-+.+.+..+..| .+.++..|..+.... . ..
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36678878876 48888888876543 3589999988752222222223334 256667888874221 0 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.+|.++..+-.....-+ ..| ....+.++..... .-...+++.+...+ +++|++|+.+.
T Consensus 83 g~id~lv~nAg~~~~~~~-~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~g~iv~isS 145 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEAL-EGS--LLETSKSAFNTAMEISVYSLIELTNTLKPLL----NNGASVLTLSY 145 (275)
T ss_dssp SCEEEEEECCCCCCGGGG-SSC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE----EEEEEEEEEEC
T ss_pred CCCCEEEECCccCccccC-CCC--cccCCHHHHHHHHHHHhHHHHHHHHHHHHHh----ccCCEEEEEec
Confidence 478999987642211000 011 1122344333222 22334555555554 56788887654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=85.24 E-value=0.76 Score=43.72 Aligned_cols=94 Identities=20% Similarity=0.202 Sum_probs=56.5
Q ss_pred cCCCCCceEEEeccC-C-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc----ccCC
Q 016730 174 LAPQEKERVIDMAAA-P-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cag-p-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----~~~~ 247 (384)
..+++|++||=.||+ + |..+..++...+ .+|+++ .++++++.+ +.+|.+. + . +..++.. ...+
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~~~~----~~lGa~~--i-~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDLEYV----RDLGATP--I-D-ASREPEDYAAEHTAG 214 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHHHHH----HHHTSEE--E-E-TTSCHHHHHHHHHTT
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHHHHH----HHcCCCE--e-c-cCCCHHHHHHHHhcC
Confidence 357899999988742 2 334444555443 489999 888887665 4468754 2 2 2222211 1123
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..||+|+- |+|. ..+..+++.+ ++||++|..
T Consensus 215 ~g~D~vid---~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 245 (343)
T 3gaz_A 215 QGFDLVYD---TLGG--------------------------PVLDASFSAV----KRFGHVVSC 245 (343)
T ss_dssp SCEEEEEE---SSCT--------------------------HHHHHHHHHE----EEEEEEEES
T ss_pred CCceEEEE---CCCc--------------------------HHHHHHHHHH----hcCCeEEEE
Confidence 57998864 3331 1356677775 999998853
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=85.17 E-value=1.4 Score=41.26 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=49.8
Q ss_pred ecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
..|....... +++|+|++|..-..+|. +-.+=......++. ++..|.+.| +|||++|--.--
T Consensus 195 ~lDfg~p~~~---~k~DvV~SDMApn~sGh----------~yqQC~DHarii~L-al~fA~~vL----kPGGtfV~Kvyg 256 (320)
T 2hwk_A 195 RLDLGIPGDV---PKYDIIFVNVRTPYKYH----------HYQQCEDHAIKLSM-LTKKACLHL----NPGGTCVSIGYG 256 (320)
T ss_dssp CGGGCSCTTS---CCEEEEEEECCCCCCSC----------HHHHHHHHHHHHHH-THHHHGGGE----EEEEEEEEEECC
T ss_pred ccccCCcccc---CcCCEEEEcCCCCCCCc----------cccccchHHHHHHH-HHHHHHHhc----CCCceEEEEEec
Confidence 4555543322 67999999976555553 10100112222233 778888886 999999966544
Q ss_pred CCccccHHHHHHHHhcC-CCEEeec
Q 016730 315 IMVTENEAVIDYALKKR-DVKLVPC 338 (384)
Q Consensus 315 i~~~ENe~vv~~~l~~~-~~~l~~~ 338 (384)
.-..+-|+++..+.+.+ .++.+.+
T Consensus 257 gaDr~se~lv~~LaR~F~~Vr~vKP 281 (320)
T 2hwk_A 257 YADRASESIIGAIARQFKFSRVCKP 281 (320)
T ss_dssp CCSHHHHHHHHHHHTTEEEEEEECC
T ss_pred CCcccHHHHHHHHHHhcceeeeeCC
Confidence 43334566666666655 4556554
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=85.16 E-value=7.8 Score=34.88 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=53.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.| |.||.+.+++..+.. ...|+.+ +.+..+++.+.+.++..|. ++.++..|..+..... ..
T Consensus 3 ~~k~vlVTG-as~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTG-SSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEec-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355667444 567778888776543 3467775 8899999888888877664 4677788988753210 11
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
++.|.++.+|-
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899998764
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.14 E-value=5.6 Score=36.04 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=67.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |+||.+.+++..+. ....|+.++.++++++.+.+. ++ .++.++..|..+.... . ..+
T Consensus 5 ~~k~vlITG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 5 SGKTILVTG-AASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---LE-AEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---CC-SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hc-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356677555 56777887777553 335899999998877665443 33 3567778898875321 0 014
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH----HHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l----~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.+|.++..+-....+-+ +..+.++.... ..-...+++.+...+ +.+|++|+.+..
T Consensus 80 ~iD~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~g~iv~isS~ 138 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALS-------WNLPLEAWEKVLRVNLTGSFLVARKAGEVL----EEGGSLVLTGSV 138 (263)
T ss_dssp CCCEEEEGGGGTTTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC----CTTCEEEEECCC
T ss_pred CCcEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHH----hcCCEEEEEecc
Confidence 68999987743222211 12233333221 122233445555543 447888876543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=7 Score=34.58 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=52.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceE-EEEecCCCCccccc---C----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVL---G----LN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v-~~~~~D~~~~~~~~---~----~~ 248 (384)
.|.+||=.| |+|+.+.+++..+. ....|++++.++.+++.+.+.+ +. .+ .++..|..+..... . .+
T Consensus 10 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (254)
T 2wsb_A 10 DGACAAVTG-AGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL---GA-AVAARIVADVTDAEAMTAAAAEAEAVA 84 (254)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GG-GEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cc-cceeEEEEecCCHHHHHHHHHHHHhhC
Confidence 356777555 56788888877553 3358999999998877665544 33 34 67788988753211 0 14
Q ss_pred CCCEEEEcCCCCC
Q 016730 249 TVDRVLLDAPCSG 261 (384)
Q Consensus 249 ~fD~VllDaPCSg 261 (384)
.+|.|+..+....
T Consensus 85 ~id~li~~Ag~~~ 97 (254)
T 2wsb_A 85 PVSILVNSAGIAR 97 (254)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCcEEEECCccCC
Confidence 7899999775433
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.00 E-value=6 Score=35.39 Aligned_cols=77 Identities=9% Similarity=0.085 Sum_probs=49.7
Q ss_pred CceEEEeccCCChHHHHHHHHccCC----ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cC-----
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT----GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG----- 246 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~----g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~----- 246 (384)
+.+||=.| |+|+.+.+++..+-.. ..|++++.+..+++.+.+.... + .++.++..|..+.... ..
T Consensus 21 ~k~vlITG-asggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~-~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 97 (267)
T 1sny_A 21 MNSILITG-CNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-H-SNIHILEIDLRNFDAYDKLVADIEGV 97 (267)
T ss_dssp CSEEEESC-CSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-C-TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhcc-C-CceEEEEecCCChHHHHHHHHHHHHh
Confidence 55677555 5688888888765443 4899999988766655433332 3 2577778898875321 10
Q ss_pred CC--CCCEEEEcCC
Q 016730 247 LN--TVDRVLLDAP 258 (384)
Q Consensus 247 ~~--~fD~VllDaP 258 (384)
.+ .+|.|+..+-
T Consensus 98 ~g~~~id~li~~Ag 111 (267)
T 1sny_A 98 TKDQGLNVLFNNAG 111 (267)
T ss_dssp HGGGCCSEEEECCC
T ss_pred cCCCCccEEEECCC
Confidence 01 6999998764
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.99 E-value=7 Score=37.85 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=51.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHH---HHHHHHHHHHHcC--------CceEEEEecCCCCccccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKAS---RLKSLTANLHRMG--------VTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~---rl~~l~~n~~r~g--------~~~v~~~~~D~~~~~~~~ 245 (384)
++.+|| +.-|+|+.+.+++..+... ..|++++.++. .++.+.+.++... ...+.++.+|..+.....
T Consensus 68 ~~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 68 PLGNTL-LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCEEEE-EECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCEEE-EecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 455677 4556799999888876544 47999988776 5556666554431 135778888887643222
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
....+|.|+..+.
T Consensus 147 ~~~~~d~Vih~A~ 159 (427)
T 4f6c_A 147 LPENMDTIIHAGA 159 (427)
T ss_dssp CSSCCSEEEECCC
T ss_pred CcCCCCEEEECCc
Confidence 2368999998654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.88 E-value=6.6 Score=35.91 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.| |.||.+.+++..+- ....|+.++. ++++++.+.+.+...|. .+.++..|..+..... ..
T Consensus 28 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 28 ARPVAIVTG-GRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 466777555 55667777776543 3358989985 88888888888877764 4777788988753211 11
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.+|-
T Consensus 106 g~iD~lvnnAg 116 (280)
T 4da9_A 106 GRIDCLVNNAG 116 (280)
T ss_dssp SCCCEEEEECC
T ss_pred CCCCEEEECCC
Confidence 47899999774
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.86 E-value=0.68 Score=44.16 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=52.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC--CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLN 248 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~--~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~ 248 (384)
..+++|++||=.||+ |+.+....++... ...|++.+ +..+.+.++ +|.+.+. .. ..++.. ...+.
T Consensus 138 ~~~~~g~~VlV~Ga~-G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~~~--~~-~~~~~~~~~~~~~~ 207 (349)
T 4a27_A 138 ANLREGMSVLVHSAG-GGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTHLF--DR-NADYVQEVKRISAE 207 (349)
T ss_dssp SCCCTTCEEEESSTT-SHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSEEE--ET-TSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEEcCC-cHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcEEE--cC-CccHHHHHHHhcCC
Confidence 357899999977763 4555555554432 35888888 555555442 6765432 22 222211 11235
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.||+|+- |+|.. .+..+++.| ++||+++..
T Consensus 208 g~Dvv~d---~~g~~--------------------------~~~~~~~~l----~~~G~~v~~ 237 (349)
T 4a27_A 208 GVDIVLD---CLCGD--------------------------NTGKGLSLL----KPLGTYILY 237 (349)
T ss_dssp CEEEEEE---ECC---------------------------------CTTE----EEEEEEEEE
T ss_pred CceEEEE---CCCch--------------------------hHHHHHHHh----hcCCEEEEE
Confidence 7998874 33321 124566775 999999854
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=84.82 E-value=8.6 Score=34.13 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=54.0
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
|.+|| +.-|+||.+.+++..+. ....|++++. ++.+++.+.+.+...|. ++.++..|..+.... . ..+
T Consensus 4 ~k~vl-VTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 4 GKVAL-VTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGS-DAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 55666 44566788888877553 3358999998 88888888777776664 466777898875321 1 014
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++..+-.
T Consensus 82 ~id~lv~nAg~ 92 (246)
T 2uvd_A 82 QVDILVNNAGV 92 (246)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999987643
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.63 E-value=10 Score=34.65 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=54.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHH-----cCCceEEEEecCCCCcccc---cC--
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHR-----MGVTNTIVCNYDGNELPKV---LG-- 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r-----~g~~~v~~~~~D~~~~~~~---~~-- 246 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.+..+++.+.+.+.. .+ .++.++..|..+.... ..
T Consensus 17 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 17 QGQVAIVTG-GATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQ-ARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCC-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCC-ccEEEEecCCCCHHHHHHHHHHH
Confidence 366777555 56888888877553 335899999999998888777765 23 3577788998875321 10
Q ss_pred ---CCCCCEEEEcCC
Q 016730 247 ---LNTVDRVLLDAP 258 (384)
Q Consensus 247 ---~~~fD~VllDaP 258 (384)
.+.+|.|+..|-
T Consensus 95 ~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 95 LDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 136999998764
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=84.54 E-value=8.2 Score=34.50 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=54.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cC------C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG------L 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~------~ 247 (384)
.|.+|| +..|+|+.+.+++..+- ....|++++.++.+++.+.+.++..|. ++.++..|..+.... .. .
T Consensus 13 ~~k~vl-ITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 13 KAKTVL-VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp TTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 356677 44567788888887553 335899999999988888777776664 466777888764221 10 1
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.|+..+-
T Consensus 91 ~~id~li~~Ag 101 (266)
T 1xq1_A 91 GKLDILINNLG 101 (266)
T ss_dssp TCCSEEEEECC
T ss_pred CCCcEEEECCC
Confidence 46899998764
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=84.51 E-value=4.4 Score=40.14 Aligned_cols=114 Identities=9% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHH------------HHHc-CCceEEEEecCCCCcccccCCCCCCEE
Q 016730 188 APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTAN------------LHRM-GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 188 gpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n------------~~r~-g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
|.|..++.+|..+... -.|+++|+++++++.+++. +++. .-.++.+. .|. ...|.|
T Consensus 18 GlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t-td~---------~~aDvv 87 (431)
T 3ojo_A 18 GLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS-TTP---------EASDVF 87 (431)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SSC---------CCCSEE
T ss_pred eeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe-Cch---------hhCCEE
Confidence 5566666666554433 4899999999999988752 1110 01234443 231 247999
Q ss_pred EEcCCCCCCCcC-C--CCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc
Q 016730 254 LLDAPCSGTGVI-S--KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 254 llDaPCSg~G~~-~--r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~ 330 (384)
++=.| +..- . +.||+.. + +...+..... |++|..+|+. .|+.|.-.+++.+.+++.
T Consensus 88 ii~Vp---Tp~~~~~~~~~Dl~~------V-------~~~~~~i~~~----l~~g~iVV~~-STV~pgtt~~v~~~i~e~ 146 (431)
T 3ojo_A 88 IIAVP---TPNNDDQYRSCDISL------V-------MRALDSILPF----LKKGNTIIVE-STIAPKTMDDFVKPVIEN 146 (431)
T ss_dssp EECCC---CCBCSSSSCBBCCHH------H-------HHHHHHHGGG----CCTTEEEEEC-SCCCTTHHHHTHHHHHHT
T ss_pred EEEeC---CCccccccCCccHHH------H-------HHHHHHHHHh----CCCCCEEEEe-cCCChhHHHHHHHHHHHH
Confidence 99555 2221 1 2344431 1 1112233333 4887666654 488888888888877775
Q ss_pred CC
Q 016730 331 RD 332 (384)
Q Consensus 331 ~~ 332 (384)
.+
T Consensus 147 ~g 148 (431)
T 3ojo_A 147 LG 148 (431)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.49 E-value=10 Score=34.33 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHH-HHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~-~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.+ +..|. .+.++..|..+.... . ..
T Consensus 20 ~~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 20 RGRVALVTG-GSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKF 97 (267)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356677555 56777888777553 3358999999999888777666 44454 466677898874321 0 01
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+.+|.++..+-.
T Consensus 98 g~iD~lvnnAg~ 109 (267)
T 1vl8_A 98 GKLDTVVNAAGI 109 (267)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 478999987643
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=84.44 E-value=9.3 Score=34.21 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+||.+.+++..+. ....|++++.++.+++.+.+.+... |. ++.++..|..+.... . ..
T Consensus 6 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 6 SGKVAVITG-SSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356677454 56777888877553 3358999999999888777766554 53 467778898875321 1 01
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+.+|.++..+--
T Consensus 84 g~id~lv~~Ag~ 95 (263)
T 3ai3_A 84 GGADILVNNAGT 95 (263)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999987643
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=9.2 Score=34.79 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=53.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC----------------HHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK----------------ASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~----------------~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
.|.+||=.|++ ||.+.+++..+- ....|+.+|.+ .++++.+.+.+...+. .+.++..|..+
T Consensus 10 ~~k~~lVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 87 (286)
T 3uve_A 10 EGKVAFVTGAA-RGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR-RIVTAEVDVRD 87 (286)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTC
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC-ceEEEEcCCCC
Confidence 46677755554 667777776543 34589999987 7788877777766654 47777889887
Q ss_pred ccccc--------CCCCCCEEEEcCC
Q 016730 241 LPKVL--------GLNTVDRVLLDAP 258 (384)
Q Consensus 241 ~~~~~--------~~~~fD~VllDaP 258 (384)
..... ..+..|.++.++-
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg 113 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAG 113 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 53210 1147999998764
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=84.17 E-value=11 Score=33.28 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=51.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cC-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG-----LN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~-----~~ 248 (384)
.|.+|| +..|+|+.+.+++..+. ....|++++.++.+++.+.+.+... .++.++..|..+.... .. .+
T Consensus 5 ~~k~vl-VtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (251)
T 1zk4_A 5 DGKVAI-ITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCcEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc--CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 355666 44567788888877553 3458999999998877665554321 3577778898874321 10 13
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+..+.
T Consensus 82 ~id~li~~Ag 91 (251)
T 1zk4_A 82 PVSTLVNNAG 91 (251)
T ss_dssp SCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998764
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=84.14 E-value=4.8 Score=34.91 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=48.1
Q ss_pred eEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC-cc---cccCCCCCCEEEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LP---KVLGLNTVDRVLL 255 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~-~~---~~~~~~~fD~Vll 255 (384)
+|| +.-|+|+.+.+++..+... ..|++++.++.++..+ .++.++.+|..+ .. ..+ ..+|.|+.
T Consensus 2 ~il-ItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~--~~~d~vi~ 69 (219)
T 3dqp_A 2 KIF-IVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---------NNVKAVHFDVDWTPEEMAKQL--HGMDAIIN 69 (219)
T ss_dssp EEE-EESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---------TTEEEEECCTTSCHHHHHTTT--TTCSEEEE
T ss_pred eEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---------CCceEEEecccCCHHHHHHHH--cCCCEEEE
Confidence 455 3446799999988876554 4899999988654332 467888899988 42 223 56999998
Q ss_pred cCCCCC
Q 016730 256 DAPCSG 261 (384)
Q Consensus 256 DaPCSg 261 (384)
.+..+.
T Consensus 70 ~ag~~~ 75 (219)
T 3dqp_A 70 VSGSGG 75 (219)
T ss_dssp CCCCTT
T ss_pred CCcCCC
Confidence 665433
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=13 Score=33.04 Aligned_cols=124 Identities=11% Similarity=0.123 Sum_probs=71.3
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+.+|| +..|.||.+.+++..+- ....|+.++. +.++++.+.+.++..|. .+.++..|..+.... . ..+
T Consensus 4 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSAL-VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 44566 44566777888877553 3347877776 67888888888887775 466678898875321 1 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+|.++.+|--+..+.+. ..+.++... ...-...+++.++..+.. +.+|++|+.+.
T Consensus 82 ~id~lv~nAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~~~g~iv~isS 141 (246)
T 3osu_A 82 SLDVLVNNAGITRDNLLM-------RMKEQEWDDVIDTNLKGVFNCIQKATPQMLR--QRSGAIINLSS 141 (246)
T ss_dssp CCCEEEECCCCCCCCCTT-------TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEECC
T ss_pred CCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH--cCCCEEEEEcc
Confidence 789999977543333221 123333222 112223345555444310 35688887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 384 | ||||
| d1ixka_ | 313 | c.66.1.38 (A:) Hypothetical methyltransferase PH13 | 2e-65 | |
| d1sqga2 | 284 | c.66.1.38 (A:145-428) Ribosomal RNA small subunit | 1e-51 | |
| d2b9ea1 | 293 | c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) | 2e-50 | |
| d1wxxa2 | 318 | c.66.1.51 (A:65-382) Hypothetical protein TTHA1280 | 3e-09 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 1e-06 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 4e-06 | |
| d2b78a2 | 317 | c.66.1.51 (A:69-385) Hypothetical protein SMu776, | 3e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 1e-04 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 6e-04 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.001 | |
| d1wg8a2 | 182 | c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf | 0.001 |
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 208 bits (530), Expect = 2e-65
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 10/308 (3%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
GY++ +++ + + E+ EKP P C R NTLK +DL L +G
Sbjct: 12 LGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKR 70
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
W+K G + I +TPE++ G +Q ASS P +AL P+ E V DMAAAPGG
Sbjct: 71 -VPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 129
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KT+Y+A LM+N G+IYA ++ +RL+ NL R+GV N I+ + + ++ D
Sbjct: 130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV--EFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
++LLDAPC+G+G I K+ K +++++DI+ C LQ +L+ ++++ K GG +VYS
Sbjct: 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL----KPGGILVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCS+ ENE VI +AL DV+L+P L +G ++ RR YP VH
Sbjct: 244 TCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIELSEEIKNARRLYPDVHE 301
Query: 372 MDGFFVAK 379
GFF+AK
Sbjct: 302 TSGFFIAK 309
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 172 bits (435), Expect = 1e-51
Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
+L+ L + +P + ++E+ + P+ LR N R +L G+ P + +
Sbjct: 3 SWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADY 61
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTY 195
V ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGGKTT+
Sbjct: 62 PDA--VRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTH 119
Query: 196 IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255
I + + A ++ RL + NL R+G+ T+ + G DR+LL
Sbjct: 120 ILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG-RYPSQWCGEQQFDRILL 177
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPCS TGVI + +K + DI + + LQ +++ A + K+GG +VY+TCS+
Sbjct: 178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLVYATCSV 233
Query: 316 MVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ EN I L++ D +L G + ++ P DG
Sbjct: 234 LPEENSLQIKAFLQRTADAELCETGTPE-----------------QPGKQNLPGAEEGDG 276
Query: 375 FFVAK 379
FF AK
Sbjct: 277 FFYAK 281
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 169 bits (428), Expect = 2e-50
Identities = 87/298 (29%), Positives = 129/298 (43%), Gaps = 32/298 (10%)
Query: 103 PICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV----------------GLVVYDSQ 146
P +R NTLKT D+ D +G + + L+V+ +Q
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+ P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN G I
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDAPCSGTGVI 265
+A ++ A RL S+ L R GV+ + D + V +LLD CSG+G+
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182
Query: 266 SKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
S+ + + + + Q++ + A+ +VYSTCS+ ENE V
Sbjct: 183 SRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ-----RLVYSTCSLCQEENEDV 237
Query: 324 IDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
+ AL++ +L P + +G F P E R P GFFVA
Sbjct: 238 VRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFVAV 289
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Score = 55.6 bits (133), Expect = 3e-09
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 26/171 (15%)
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
+ + ER +D+ + GG + L + A + A L+ N G+ N
Sbjct: 139 LYMERFRGERALDVFSYAGG---FALHLALGFREVVAVDSSAEALRRAEENARLNGLGNV 195
Query: 232 IVCNYDGNELPK--VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ 289
V + +L + D V+LD P G D+++ K+
Sbjct: 196 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKK-------------DVERAYRAYKE 242
Query: 290 LILAAIDMVDANSKSGGYIVYSTCSIMVTEN--EAVIDYALK--KRDVKLV 336
+ L AI ++ K GG + ++CS +TE A++ A + R +++V
Sbjct: 243 VNLRAIKLL----KEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 26/164 (15%)
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDG 238
+RV+D+ GG I A + + + +++ N GV + +
Sbjct: 147 DRVLDVFTYTGGFA--IHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA 204
Query: 239 NELPKVLGL--NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296
E + L D V+LD P + K L+ + + A ++
Sbjct: 205 FEEMEKLQKKGEKFDIVVLDPPAFV----------QHEKDLKAGLRA---YFNVNFAGLN 251
Query: 297 MVDANSKSGGYIVYSTCSIMVTEN---EAVIDYALK-KRDVKLV 336
+V K GG +V +CS V + +I K + +K++
Sbjct: 252 LV----KDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 44.8 bits (105), Expect = 4e-06
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 170 PVM------ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
PVM L P++++ ++D GG + I I ++ + L+ L
Sbjct: 9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKL 67
Query: 224 HRMGVTNTIVCN--YDGNELPKVLGLNTVDRVLLDAPCS 260
++ + + L K LG+ VD +L+D S
Sbjct: 68 KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS 106
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Score = 42.9 bits (100), Expect = 3e-05
Identities = 34/306 (11%), Positives = 83/306 (27%), Gaps = 42/306 (13%)
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
+ + G ++ + L SF + + L R +D
Sbjct: 32 FNQDGDSFGGVTIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVYPNFLGAYEKIRFKGID 91
Query: 131 PLSKWSKVGLV-------VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
+S + M G ++ Q + A + V+
Sbjct: 92 NVSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGK--TVL 149
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
++ + + +AA M + ++ A+ + +
Sbjct: 150 NLFSYTAAFS--VAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY 207
Query: 244 VLGL----NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
T D +++D P + K + + K +LI ++++
Sbjct: 208 FKYARRHHLTYDIIIIDPPSFA----------RNKKEVFSVSKD---YHKLIRQGLEIL- 253
Query: 300 ANSKSGGYIVYSTCSIMVTEN--EAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
G I+ ST + +T + + I+ K+ + D + + +
Sbjct: 254 ---SENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL----DLQQLPS----DFAVNV 302
Query: 358 SLEKTR 363
E +
Sbjct: 303 QDESSN 308
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 1e-04
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT- 229
+ + + V++ + GG + +++ + + G + + E++ N +
Sbjct: 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW 150
Query: 230 ----------NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
N + D + + + T D V LD
Sbjct: 151 KLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.6 bits (89), Expect = 6e-04
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
A+ + + + V+ + A G ++++ ++ G I+ E L+ L +
Sbjct: 59 GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV 118
Query: 224 HRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
I+ + E + L + VD + D
Sbjct: 119 EERRNIVPILGDATKPEEYRAL-VPKVDVIFEDVAQPT 155
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.8 bits (87), Expect = 0.001
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224
A+ L L + ERV+ + AA G +++A ++ IYA E A + L +
Sbjct: 43 AAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVR 101
Query: 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259
++ + + + VD + D
Sbjct: 102 ERNNIIPLLFDASKPWKYSGI-VEKVDLIYQDIAQ 135
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Score = 37.4 bits (86), Expect = 0.001
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 167 SFLPVM------ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220
+ +PV+ LA + +D G + +++ G + + +
Sbjct: 1 THVPVLYQEALDLLAVRPGGVYVDATLGGAG---HARGILERGGRVIGLDQDPEAVAR-A 56
Query: 221 ANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262
LH G+T LG+ VD +L D S
Sbjct: 57 KGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSF 98
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 100.0 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 100.0 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.88 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.81 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.8 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.64 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.61 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.6 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.6 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.59 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.57 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.57 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.56 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.56 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.55 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.54 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.48 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.47 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.46 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.37 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.36 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.36 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.36 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.34 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.34 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.34 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.34 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.33 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.33 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.29 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.26 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.24 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.23 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.23 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.2 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.19 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.19 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.19 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.18 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.18 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.17 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.16 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.16 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.15 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.15 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.14 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.13 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.11 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 99.09 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.07 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.06 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.04 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.04 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.03 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.02 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.0 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.99 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.98 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.96 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.96 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.95 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.88 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.86 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.85 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.83 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.83 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.81 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.78 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.77 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.76 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.73 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.72 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.71 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.71 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.68 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.6 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.56 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.52 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.36 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.22 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.15 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.06 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.98 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.98 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.92 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.82 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.74 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.72 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.71 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.68 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.68 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.65 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.58 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.38 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.36 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.35 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.34 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.3 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.28 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.22 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.09 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.07 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.05 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.93 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.87 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.79 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.78 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.64 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.63 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.51 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.5 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.46 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.39 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.35 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.34 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.14 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.09 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.07 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.93 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.77 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.7 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.66 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.43 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.38 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.14 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.78 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.68 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.42 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.34 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.01 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.73 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.49 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.36 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.2 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.36 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.26 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.07 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 92.06 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 91.69 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.46 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.44 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 91.41 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.38 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.78 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.62 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 90.44 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.22 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.05 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 89.64 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 89.44 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.43 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.3 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 89.15 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 89.1 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 88.78 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 88.69 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 88.36 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 88.3 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.95 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 87.86 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.7 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.28 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.26 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.63 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 85.63 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.62 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 85.55 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 85.01 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 84.95 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 84.78 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.75 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.74 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 84.47 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.61 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 83.51 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.52 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 82.42 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 82.04 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 81.48 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 80.4 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 80.37 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 80.24 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.11 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 80.05 |
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.6e-76 Score=568.40 Aligned_cols=303 Identities=37% Similarity=0.673 Sum_probs=274.1
Q ss_pred HHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCC
Q 016730 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149 (384)
Q Consensus 70 ~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (384)
.+|+||+||+++|.+.|| ++++++++++++++|+|+|||++|++++++.+.|.+.|+.++++ +|++.++.+...+.++
T Consensus 10 ~~~~~p~wl~~~~~~~~G-ee~~~l~~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~l 87 (313)
T d1ixka_ 10 LRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTREPFSI 87 (313)
T ss_dssp HHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE-TTEEEEEEEEECSSCG
T ss_pred HHcCCCHHHHHHHHHHhh-HHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEEC-CCCcchhhhccCCCcc
Confidence 589999999999999999 57999999999999999999999999999999999999999998 8999999877666788
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
..+++|.+|++++||++||+++.+|+|++|++|||+||||||||+||++++.+.|.|+|+|+++.|++.+++|++|+|+.
T Consensus 88 ~~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~ 167 (313)
T d1ixka_ 88 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL 167 (313)
T ss_dssp GGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccCHhhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE
Q 016730 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (384)
Q Consensus 230 ~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv 309 (384)
|+.+.+.|+..++... ..||+||+||||||+|+++|+|+++|.++++++..++.+|++||.+|+++| ||||+||
T Consensus 168 ~i~~~~~d~~~~~~~~--~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----k~gG~lV 241 (313)
T d1ixka_ 168 NVILFHSSSLHIGELN--VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL----KPGGILV 241 (313)
T ss_dssp SEEEESSCGGGGGGGC--CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE----EEEEEEE
T ss_pred cccccccccccccccc--ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhee----CCCcEEE
Confidence 9999899988775433 789999999999999999999999999999999999999999999999997 9999999
Q ss_pred EEeccCCccccHHHHHHHHhcCCCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 310 YSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 310 YsTCSi~~~ENe~vv~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
|||||++++|||+||+++|++++++++++.. +.+++..+....+++....++|++||.+++||||+|+|+|
T Consensus 242 YsTCSl~~eENE~VV~~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~l~K 312 (313)
T d1ixka_ 242 YSTCSLEPEENEFVIQWALDNFDVELLPLKY--GEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRK 312 (313)
T ss_dssp EEESCCCGGGTHHHHHHHHHHSSEEEECCCS--SEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEEEEEEE
T ss_pred EeeccCChHhHHHHHHHHHhcCCCEEeeccc--CCccccCccccccccccCCcEEECCCCCCcccEEEEEEEE
Confidence 9999999999999999999999999987643 3455555555566777788999999999999999999997
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.8e-73 Score=540.53 Aligned_cols=283 Identities=30% Similarity=0.449 Sum_probs=259.1
Q ss_pred ChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCc
Q 016730 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153 (384)
Q Consensus 74 ~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (384)
||+||+++|.+.|| +++.++++++++++|+++|||++|++++++.+.|.+.|+...+. ++++.++.+ ..+.++..+|
T Consensus 1 HP~WLv~~~~~~~g-ee~~~l~~a~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~-~~~p~~l~l-~~~~~l~~~~ 77 (284)
T d1sqga2 1 HPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPH-ADYPDAVRL-ETPAPVHALP 77 (284)
T ss_dssp SCHHHHHHHHHHCT-TTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECC-TTCTTEEEE-SSCCCGGGST
T ss_pred CcHHHHHHHHHHCH-HHHHHHHHHCCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeec-CCCCcccee-ccccchhhCh
Confidence 79999999999999 67999999999999999999999999999999999999999888 788888875 5567889999
Q ss_pred ccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEE
Q 016730 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233 (384)
Q Consensus 154 ~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~ 233 (384)
+|.+|++++||++||+++.+|++++|++|||+||||||||++|++++.+ |.|+|+|+++.|++.++++++|+|++++.+
T Consensus 78 ~~~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~ 156 (284)
T d1sqga2 78 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVK 156 (284)
T ss_dssp TGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEE
T ss_pred hhhccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceee
Confidence 9999999999999999999999999999999999999999999999876 899999999999999999999999998887
Q ss_pred EecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
...|.... .......||+||+||||||+|+++|+|+++|.+++.++.+++.+|++||.+|+++| ||||+||||||
T Consensus 157 ~~~~~~~~-~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~l----k~gG~lvYsTC 231 (284)
T d1sqga2 157 QGDGRYPS-QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLVYATC 231 (284)
T ss_dssp ECCTTCTH-HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE----EEEEEEEEEES
T ss_pred eccccccc-hhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhc----CCCceEEEeee
Confidence 66665533 22334689999999999999999999999999999999999999999999999997 99999999999
Q ss_pred cCCccccHHHHHHHHhcC-CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 314 Si~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
|++++|||+||++||+++ ++++++...+ ...++|++||.++|||||+|+|+|
T Consensus 232 S~~~~ENE~vv~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~P~~~~~dGFF~A~l~K 284 (284)
T d1sqga2 232 SVLPEENSLQIKAFLQRTADAELCETGTP-----------------EQPGKQNLPGAEEGDGFFYAKLIK 284 (284)
T ss_dssp CCCGGGTHHHHHHHHHHCTTCEECSSBCS-----------------SSBSEEECCCTTSCCSEEEEEEEC
T ss_pred cCchhhCHHHHHHHHHhCCCcEEecCCCC-----------------CCCcEEECCCCCCcccEEEEEEEC
Confidence 999999999999999875 8998775432 124589999999999999999986
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-64 Score=482.99 Aligned_cols=270 Identities=33% Similarity=0.456 Sum_probs=218.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHcCCcccCC-----------------CccccccEEEecCCCCCCCCcccccceEEEe
Q 016730 101 PRPICLRTNTLKTRRRDLADVLINRGVNLDPL-----------------SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQ 163 (384)
Q Consensus 101 ~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Q 163 (384)
+.|+|+||||+|++++++.+.|+++|+.+++. .++++.++. ++...++..+|+|++|+|++|
T Consensus 1 ~lP~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~~~~~l~~~~~~~~G~~~~Q 79 (293)
T d2b9ea1 1 QLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV-FPAQTDLHEHPLYRAGHLILQ 79 (293)
T ss_dssp CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEE-ECTTCCCTTSHHHHTTSEEEC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEE-eCCCCCcccChHHhCcEEEEc
Confidence 46999999999999999999999999875431 135566655 566778999999999999999
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
|.+|++++.+|++++|++|||+||||||||+||++++++.+.|+|+|+++.|++.+++|++++|+.|+.+.+.|+..+..
T Consensus 80 D~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~ 159 (293)
T d2b9ea1 80 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP 159 (293)
T ss_dssp CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred CCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred cc-CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHH--HHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 244 VL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 244 ~~-~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~--i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
.. ..++||+||+||||||+|+++|+|+++|.++.++ +..++.+|+++|.+|+. + ||||+|||||||++++||
T Consensus 160 ~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l----~~gG~lvYsTCSl~~~EN 234 (293)
T d2b9ea1 160 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-F----PSLQRLVYSTCSLCQEEN 234 (293)
T ss_dssp TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTT-C----TTCCEEEEEESCCCGGGT
T ss_pred cccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-c----ccccEEEEeeccCChhHh
Confidence 21 1267999999999999999999999999876655 68999999999999995 3 999999999999999999
Q ss_pred HHHHHHHHhcC-C-CEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 321 EAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 321 e~vv~~~l~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
|+||++||+++ + +++++....+...|+..+ +...+++|++||.++|||||+|+|+|
T Consensus 235 e~vV~~~L~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~r~~P~~~~~dGfFiA~L~k 292 (293)
T d2b9ea1 235 EDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIER 292 (293)
T ss_dssp HHHHHHHHTTSTTTEEECCCCTTCCCBCCSSS------TTGGGSEEECHHHHSSCSEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEeccCcccccccccccC------CCCCCEEEECCCCCCccCEEEEEEEE
Confidence 99999999876 3 677765544444443322 33567899999999999999999997
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=5e-23 Score=197.83 Aligned_cols=163 Identities=23% Similarity=0.285 Sum_probs=131.8
Q ss_pred CCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 151 ~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
-..+++.|.|..|.....+ +...+|.+|||+|||+|+++++++.. ..+|+++|+|+.+++.+++|++++|+.+
T Consensus 122 l~~~~~tG~flDqr~~r~~----~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~ 194 (318)
T d1wxxa2 122 LRAGQKTGAYLDQRENRLY----MERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN 194 (318)
T ss_dssp CSTTSCCCCCGGGHHHHHH----GGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred chhccccccchhhhhhHHH----HHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCC
Confidence 3467889999999876543 22346999999999999999988753 3689999999999999999999999999
Q ss_pred EEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 231 TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 231 v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
+.++.+|+.++...+ .+++||+|++||||++.+. .++......|.+++..++++| ||||.|
T Consensus 195 ~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~-------------~~~~~~~~~~~~l~~~a~~lL----kpGG~L 257 (318)
T d1wxxa2 195 VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGK-------------KDVERAYRAYKEVNLRAIKLL----KEGGIL 257 (318)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCST-------------TSHHHHHHHHHHHHHHHHHTE----EEEEEE
T ss_pred cceeeccHHHHhhhhHhhhcCCCEEEEcCCccccch-------------HHHHHHHHHHHHHHHHHHHHc----CCCCEE
Confidence 999999987753221 3478999999999988762 345667778999999999997 999999
Q ss_pred EEEecc--CCccccHHHHHHHHhcC--CCEEee
Q 016730 309 VYSTCS--IMVTENEAVIDYALKKR--DVKLVP 337 (384)
Q Consensus 309 vYsTCS--i~~~ENe~vv~~~l~~~--~~~l~~ 337 (384)
+|+||| +..++.+++|....... .++++.
T Consensus 258 v~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 258 ATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999 55677788888666544 455554
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=1.1e-20 Score=181.75 Aligned_cols=160 Identities=20% Similarity=0.180 Sum_probs=127.4
Q ss_pred CcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-e
Q 016730 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-N 230 (384)
Q Consensus 152 ~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~ 230 (384)
..+++.|.|..|.....++...+ ++|++|||+|||+|++|++++.. +.++|+++|+|+..++.+++|++++|+. +
T Consensus 121 ~~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~ 196 (324)
T d2as0a2 121 MRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDR 196 (324)
T ss_dssp SSSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGG
T ss_pred ccccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCcc
Confidence 34678899998988877766554 57999999999999999987754 3468999999999999999999999995 6
Q ss_pred EEEEecCCCCcccc--cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 231 TIVCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 231 v~~~~~D~~~~~~~--~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
+.++++|+.+.... ..+.+||+|++||||.+.+ ..+.....+.+.+++..|+++| ||||.|
T Consensus 197 ~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~-------------~~~~~~~~~~y~~l~~~a~~ll----~pGG~l 259 (324)
T d2as0a2 197 MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH-------------EKDLKAGLRAYFNVNFAGLNLV----KDGGIL 259 (324)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS-------------GGGHHHHHHHHHHHHHHHHTTE----EEEEEE
T ss_pred ceeeechhhhhhHHHHhccCCCCchhcCCccccCC-------------HHHHHHHHHHHHHHHHHHHHHc----CCCcEE
Confidence 88999998764221 1347899999999997653 3455566778899999999997 999999
Q ss_pred EEEeccCCc--cccHHHHHHHHhcCC
Q 016730 309 VYSTCSIMV--TENEAVIDYALKKRD 332 (384)
Q Consensus 309 vYsTCSi~~--~ENe~vv~~~l~~~~ 332 (384)
+|+|||-+- ++-.++|.....+.+
T Consensus 260 v~~s~s~~~~~~~f~~~v~~a~~~~g 285 (324)
T d2as0a2 260 VTCSCSQHVDLQMFKDMIIAAGAKAG 285 (324)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHcC
Confidence 999999765 444567766555544
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.80 E-value=1.3e-20 Score=180.64 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=125.6
Q ss_pred CCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 016730 149 IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV 228 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~ 228 (384)
+.-..++++|.|..|.......+. ...+|.+|||+|||+|++|++++.. +...|+++|+|+..++.+++|++++|+
T Consensus 117 vdl~~g~ktGlflDqR~~r~~l~~--~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l 192 (317)
T d2b78a2 117 VFLNDGLMTGIFLDQRQVRNELIN--GSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHL 192 (317)
T ss_dssp ECSSSSSCCSSCGGGHHHHHHHHH--TTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTC
T ss_pred EEcccccccCCcHHHHHHHHHHHH--HhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcc
Confidence 344567889999888765332222 2347999999999999999876653 445899999999999999999999998
Q ss_pred c--eEEEEecCCCCcccc--cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCC
Q 016730 229 T--NTIVCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (384)
Q Consensus 229 ~--~v~~~~~D~~~~~~~--~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkp 304 (384)
. ++.++.+|+.+.... ..+++||.|++|||+.+.. ++++....+.+.+|+..|+++| +|
T Consensus 193 ~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~-------------~~~~~~~~~~~~~L~~~a~~ll----~p 255 (317)
T d2b78a2 193 DMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARN-------------KKEVFSVSKDYHKLIRQGLEIL----SE 255 (317)
T ss_dssp CCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHHHHHHTE----EE
T ss_pred cCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccc-------------hhHHHHHHHHHHHHHHHHHHHc----CC
Confidence 4 689999998765322 1346899999999975432 2223334556788999999997 99
Q ss_pred CcEEEEEeccCC--ccccHHHHHHHHhcCCCEEeec
Q 016730 305 GGYIVYSTCSIM--VTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 305 GG~lvYsTCSi~--~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
||.|+|||||-+ .++-+..|...+...+..+...
T Consensus 256 gG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 256 NGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 999999999954 4555677777776666666544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.64 E-value=4.4e-17 Score=154.62 Aligned_cols=165 Identities=12% Similarity=0.000 Sum_probs=115.9
Q ss_pred CCCCcccccceEEEeCCcCcchhhhc-CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC
Q 016730 149 IGATPEYMAGFYMLQSASSFLPVMAL-APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~l~~~~L-~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g 227 (384)
+.-++.++.|.|..|......+...+ ...+|.+|||+|||+|+++++++.. ..+|+++|.|+..++.+++|++.+|
T Consensus 102 v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~ 178 (309)
T d2igta1 102 GRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAG 178 (309)
T ss_dssp EECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHT
T ss_pred EeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhc
Confidence 34467889999999998877666554 3456889999999999999987753 3589999999999999999999999
Q ss_pred Cc--eEEEEecCCCCcccc--cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC
Q 016730 228 VT--NTIVCNYDGNELPKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (384)
Q Consensus 228 ~~--~v~~~~~D~~~~~~~--~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk 303 (384)
+. ++.+++.|+..+... ..+.+||+|++|||+.+.|--.. .| .+...+..++..+..+| +
T Consensus 179 ~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~----~~--------~~~~~~~~l~~~~~~ll----~ 242 (309)
T d2igta1 179 LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGE----VW--------QLFDHLPLMLDICREIL----S 242 (309)
T ss_dssp CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCC----EE--------EHHHHHHHHHHHHHHTB----C
T ss_pred ccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccch----hH--------HHHHHHHHHHHHHHHhc----C
Confidence 86 488999998765321 12478999999999866552110 11 11222344666666765 9
Q ss_pred CCcEEEEEeccCC---ccccHHHHHHHHhcCC
Q 016730 304 SGGYIVYSTCSIM---VTENEAVIDYALKKRD 332 (384)
Q Consensus 304 pGG~lvYsTCSi~---~~ENe~vv~~~l~~~~ 332 (384)
|||.++++||+-. +.+-++.+...+...+
T Consensus 243 ~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag 274 (309)
T d2igta1 243 PKALGLVLTAYSIRASFYSMHELMRETMRGAG 274 (309)
T ss_dssp TTCCEEEEEECCTTSCHHHHHHHHHHHTTTSC
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC
Confidence 9997666655332 2333445555554444
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=4.4e-15 Score=135.16 Aligned_cols=141 Identities=21% Similarity=0.194 Sum_probs=103.4
Q ss_pred Ccchhhh------cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 167 SFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~------L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
|-+++.+ +.++||++|||+|||+|+.|.|+|+.++++|.|+|+|+++.+++.+++++++.+ ++..+..|+..
T Consensus 56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~ 133 (227)
T d1g8aa_ 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATK 133 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTC
T ss_pred cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCC
Confidence 4555544 357899999999999999999999999888999999999999999999987654 56666788876
Q ss_pred cccc-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe--ccCCc
Q 016730 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST--CSIMV 317 (384)
Q Consensus 241 ~~~~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT--CSi~~ 317 (384)
.... .....+|.|++|.||.. .+..++.++.++| ||||+++.++ +|+..
T Consensus 134 ~~~~~~~~~~vD~i~~d~~~~~------------------------~~~~~l~~~~~~L----kpgG~lvi~~ka~~~~~ 185 (227)
T d1g8aa_ 134 PEEYRALVPKVDVIFEDVAQPT------------------------QAKILIDNAEVYL----KRGGYGMIAVKSRSIDV 185 (227)
T ss_dssp GGGGTTTCCCEEEEEECCCSTT------------------------HHHHHHHHHHHHE----EEEEEEEEEEEGGGTCT
T ss_pred cccccccccceEEEEEEccccc------------------------hHHHHHHHHHHhc----ccCCeEEEEEECCccCC
Confidence 5332 12367999999998621 2344678888886 9999998764 44444
Q ss_pred -cccHHHHHHHH--hcCCCEEee
Q 016730 318 -TENEAVIDYAL--KKRDVKLVP 337 (384)
Q Consensus 318 -~ENe~vv~~~l--~~~~~~l~~ 337 (384)
.+.+.+.+... ...++++++
T Consensus 186 ~~~~~~v~~~v~~l~~~gf~iie 208 (227)
T d1g8aa_ 186 TKEPEQVFREVERELSEYFEVIE 208 (227)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCEEEE
Confidence 44455544332 234677654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.60 E-value=7.1e-16 Score=135.92 Aligned_cols=133 Identities=19% Similarity=0.275 Sum_probs=103.5
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 247 (384)
+....+++++|++|||+|||+|..|..+|.. .++|+|+|+++.+++.+++|++++|+. ++.++++|+.+.... .
T Consensus 24 ~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~--~ 98 (186)
T d1l3ia_ 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK--I 98 (186)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT--S
T ss_pred HHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc--c
Confidence 3445678999999999999999999988764 368999999999999999999999994 899999998766433 3
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
..||.|+++.+- .. ..+++..+.+.| ||||+++++.++. |+...+...
T Consensus 99 ~~~D~v~~~~~~---------------~~----------~~~~~~~~~~~L----kpgG~lvi~~~~~---e~~~~~~~~ 146 (186)
T d1l3ia_ 99 PDIDIAVVGGSG---------------GE----------LQEILRIIKDKL----KPGGRIIVTAILL---ETKFEAMEC 146 (186)
T ss_dssp CCEEEEEESCCT---------------TC----------HHHHHHHHHHTE----EEEEEEEEEECBH---HHHHHHHHH
T ss_pred CCcCEEEEeCcc---------------cc----------chHHHHHHHHHh----CcCCEEEEEeecc---ccHHHHHHH
Confidence 789999997640 01 134778888886 9999999876544 777777666
Q ss_pred HhcCC--CEEeec
Q 016730 328 LKKRD--VKLVPC 338 (384)
Q Consensus 328 l~~~~--~~l~~~ 338 (384)
+++.+ ++++.+
T Consensus 147 l~~~~~~~~~~~~ 159 (186)
T d1l3ia_ 147 LRDLGFDVNITEL 159 (186)
T ss_dssp HHHTTCCCEEEEE
T ss_pred HHHcCCCeEEEEE
Confidence 66654 455443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.60 E-value=1.2e-15 Score=140.79 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=90.0
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~~~ 247 (384)
.....++++||++|||+|||+|+.|.+||..+++.|+|+++|+++++++.+++|++++ +..|+.+.+.|..+.. ..
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~---~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---SD 152 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---CS
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc---cc
Confidence 4467789999999999999999999999999988899999999999999999999987 4678999999987653 23
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..||+|++|.|. | | +.|.++.+.| ||||+++..
T Consensus 153 ~~fD~V~ld~p~---------p---~---------------~~l~~~~~~L----KpGG~lv~~ 185 (250)
T d1yb2a1 153 QMYDAVIADIPD---------P---W---------------NHVQKIASMM----KPGSVATFY 185 (250)
T ss_dssp CCEEEEEECCSC---------G---G---------------GSHHHHHHTE----EEEEEEEEE
T ss_pred ceeeeeeecCCc---------h---H---------------HHHHHHHHhc----CCCceEEEE
Confidence 789999999882 2 1 2578888886 999999843
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=1.5e-15 Score=141.52 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=96.6
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNEL 241 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~ 241 (384)
..+.+.+.+..|+++||++|||+|||+|+.|.+||..+++.|+|+++|+++++++.+++|++++|+ .++.+...|....
T Consensus 88 ypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~ 167 (266)
T d1o54a_ 88 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 167 (266)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred chHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc
Confidence 334455678889999999999999999999999999998889999999999999999999999998 5677877775432
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEec
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTC 313 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTC 313 (384)
+....||.|++|.|. | .+.|.++.++| ||||+|+ |+.|
T Consensus 168 ---~~~~~~D~V~~d~p~---------p------------------~~~l~~~~~~L----KpGG~lv~~~P~ 206 (266)
T d1o54a_ 168 ---FDEKDVDALFLDVPD---------P------------------WNYIDKCWEAL----KGGGRFATVCPT 206 (266)
T ss_dssp ---CSCCSEEEEEECCSC---------G------------------GGTHHHHHHHE----EEEEEEEEEESS
T ss_pred ---ccccceeeeEecCCC---------H------------------HHHHHHHHhhc----CCCCEEEEEeCc
Confidence 334679999999882 2 13578888886 9999997 6555
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.57 E-value=6.8e-15 Score=132.28 Aligned_cols=133 Identities=26% Similarity=0.283 Sum_probs=102.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~~fD~ 252 (384)
+.++||++|||+|||+|+.+.+++++.++ ++|+|+|+++.+++.+++++++.+ |+.++..|+....... ....+|.
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence 56899999999999999999999999865 799999999999999999998864 8889899988764322 1246778
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe---ccCCccccHHHHHHHHh
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST---CSIMVTENEAVIDYALK 329 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT---CSi~~~ENe~vv~~~l~ 329 (384)
|+.|.++ + ..+..++.++.+.| ||||+++.++ |+-...+.+.+.+...+
T Consensus 129 v~~~~~~---------~---------------~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~d~~~~~~~~~~~~~~ 180 (209)
T d1nt2a_ 129 IYQDIAQ---------K---------------NQIEILKANAEFFL----KEKGEVVIMVKARSIDSTAEPEEVFKSVLK 180 (209)
T ss_dssp EEECCCS---------T---------------THHHHHHHHHHHHE----EEEEEEEEEEEHHHHCTTSCHHHHHHHHHH
T ss_pred EEecccC---------h---------------hhHHHHHHHHHHHh----ccCCeEEEEEEccccCCCCCHHHHHHHHHH
Confidence 8887663 1 11244678888886 9999997664 66667777777776554
Q ss_pred --cCCCEEee
Q 016730 330 --KRDVKLVP 337 (384)
Q Consensus 330 --~~~~~l~~ 337 (384)
+.++++++
T Consensus 181 ~l~~gf~i~E 190 (209)
T d1nt2a_ 181 EMEGDFKIVK 190 (209)
T ss_dssp HHHTTSEEEE
T ss_pred HHHcCCEEEE
Confidence 24777765
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=1.3e-15 Score=137.36 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=76.8
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...|++++|++|||+|||+|..|..||.+++..+.|+++|+++.+++.++++++..++.|+.++++|+...... .+.|
T Consensus 68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~--~~~f 145 (213)
T d1dl5a1 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE--FSPY 145 (213)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--GCCE
T ss_pred HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc--ccch
Confidence 45678999999999999999999999999988899999999999999999999999999999999998765432 3689
Q ss_pred CEEEEcCC
Q 016730 251 DRVLLDAP 258 (384)
Q Consensus 251 D~VllDaP 258 (384)
|+|++++.
T Consensus 146 D~I~~~~~ 153 (213)
T d1dl5a1 146 DVIFVTVG 153 (213)
T ss_dssp EEEEECSB
T ss_pred hhhhhhcc
Confidence 99999764
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-15 Score=144.07 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=93.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----------CceEEEEe
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----------VTNTIVCN 235 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----------~~~v~~~~ 235 (384)
+.+.+..|+++||++|||+|||+|+.|.+||..+++.|+|+++|+++++++.+++|+++.+ ..|+.+.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 4466778899999999999999999999999999888999999999999999999999864 24789999
Q ss_pred cCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEecc
Q 016730 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCS 314 (384)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCS 314 (384)
.|............||+|++|.| +|. ..|.++.+.| ||||+|+ |+.|.
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD~p---------~P~------------------~~l~~~~~~L----KpGG~lv~~~P~i 215 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALDML---------NPH------------------VTLPVFYPHL----KHGGVCAVYVVNI 215 (324)
T ss_dssp SCTTCCC-------EEEEEECSS---------STT------------------TTHHHHGGGE----EEEEEEEEEESSH
T ss_pred cchhhcccccCCCCcceEeecCc---------CHH------------------HHHHHHHHhc----cCCCEEEEEeCCH
Confidence 99877654444568999999988 221 2467788875 9999988 66554
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=3.5e-15 Score=138.60 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=105.2
Q ss_pred EeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC---CceEEEEecCC
Q 016730 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG---VTNTIVCNYDG 238 (384)
Q Consensus 162 ~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g---~~~v~~~~~D~ 238 (384)
+..+.+.+....++++||++|||+|||+|+.|.+||..+++.|+|+++|+++++++.+++|+++++ ..|+.+.+.|+
T Consensus 80 iypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 80 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred cchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 333445567788999999999999999999999999999888999999999999999999999863 46899999998
Q ss_pred CCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 239 ~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
.+.+ +..+.||+|++|.|. |. +.+.++.+.| ||||+++..+.++ +
T Consensus 160 ~~~~--~~~~~fDaV~ldlp~---------P~------------------~~l~~~~~~L----kpGG~lv~~~P~i--~ 204 (264)
T d1i9ga_ 160 ADSE--LPDGSVDRAVLDMLA---------PW------------------EVLDAVSRLL----VAGGVLMVYVATV--T 204 (264)
T ss_dssp GGCC--CCTTCEEEEEEESSC---------GG------------------GGHHHHHHHE----EEEEEEEEEESSH--H
T ss_pred cccc--ccCCCcceEEEecCC---------HH------------------HHHHHHHhcc----CCCCEEEEEeCcc--C
Confidence 7653 234789999999982 31 2467778876 9999998555444 2
Q ss_pred ccHHHHHHHHhcCCC
Q 016730 319 ENEAVIDYALKKRDV 333 (384)
Q Consensus 319 ENe~vv~~~l~~~~~ 333 (384)
.-+..++.+-.+.+|
T Consensus 205 Qv~~~~~~l~~~~~f 219 (264)
T d1i9ga_ 205 QLSRIVEALRAKQCW 219 (264)
T ss_dssp HHHHHHHHHHHHSSB
T ss_pred hHHHHHHHHHHcCCe
Confidence 333444444334433
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=1.2e-14 Score=134.80 Aligned_cols=125 Identities=26% Similarity=0.316 Sum_probs=99.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++|++|||+|||+|+.|+++|.. +.++|+|+|+|+..++.+++|++.+|+.+ +.++++|++.+.. ...||+|+
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~---~~~~D~Ii 179 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRIL 179 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc---CCCCCEEE
Confidence 468999999999999999999876 34689999999999999999999999976 8999999998754 26899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE-Eec--cCCccccHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STC--SIMVTENEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY-sTC--Si~~~ENe~vv~~~l~~~ 331 (384)
+|+|+++. ++|..|++++ |+||.|.| ..| ....++..+.+..+.+..
T Consensus 180 ~~~p~~~~--------------------------~~l~~a~~~l----~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~ 229 (260)
T d2frna1 180 MGYVVRTH--------------------------EFIPKALSIA----KDGAIIHYHNTVPEKLMPREPFETFKRITKEY 229 (260)
T ss_dssp ECCCSSGG--------------------------GGHHHHHHHE----EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred ECCCCchH--------------------------HHHHHHHhhc----CCCCEEEEEeccccccchhhHHHHHHHHHHHc
Confidence 99996432 2567788886 99999854 332 333445566677777766
Q ss_pred CCEE
Q 016730 332 DVKL 335 (384)
Q Consensus 332 ~~~l 335 (384)
++++
T Consensus 230 g~~v 233 (260)
T d2frna1 230 GYDV 233 (260)
T ss_dssp TCEE
T ss_pred CCce
Confidence 6655
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=5.4e-15 Score=131.22 Aligned_cols=145 Identities=17% Similarity=0.276 Sum_probs=110.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLG 246 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~ 246 (384)
+..+|+|++|+.|||+|||+||.|.++++..++ +.|+|+|.++.+++.++++++.++- ++.++++++.++.. .+.
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHHHHcC
Confidence 356678999999999999999999999999864 8999999999999999999998873 57888888776532 223
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
.++||.||+|.+||+.-+ ++..+....+.+.|..+.++| +|||+++..| ++..|+ ..|..
T Consensus 93 ~~~vdgIl~DlGvSs~Ql-------------d~~~r~~~~~~~~L~~a~~~L----k~gG~l~ii~--f~s~Ed-r~vk~ 152 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQL-------------KGENRELENLKEFLKKAEDLL----NPGGRIVVIS--FHSLED-RIVKE 152 (192)
T ss_dssp CSCEEEEEEECSCCHHHH-------------HTSHTHHHHHHHHHHHGGGGE----EEEEEEEEEE--SSHHHH-HHHHH
T ss_pred CCCcceeeeccchhHhhh-------------hhhhccchhHHHHHHHHHHhc----CCCCeeeeec--cccHHH-HHHHH
Confidence 478999999999875311 111233445677899999986 9999999755 566676 56666
Q ss_pred HHhcC-CCEEe
Q 016730 327 ALKKR-DVKLV 336 (384)
Q Consensus 327 ~l~~~-~~~l~ 336 (384)
+.++. .++++
T Consensus 153 ~f~~~~~~~~i 163 (192)
T d1m6ya2 153 TFRNSKKLRIL 163 (192)
T ss_dssp HHHHCSSEEES
T ss_pred HHhhccccccC
Confidence 66543 45543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=3.9e-14 Score=125.30 Aligned_cols=133 Identities=13% Similarity=0.153 Sum_probs=100.3
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNEL 241 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~ 241 (384)
|.++.+.+..+.+.++++|||+|||+|..+.+++... ..|+++|+|+..++.+++|++.+++.+ +.+..+|....
T Consensus 38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~ 114 (194)
T d1dusa_ 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence 4556677778888999999999999999999887643 479999999999999999999999865 78888898653
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
. .++.||+|++|+|.. ...+ ...+++..+.++| ||||.++.+.... .+.
T Consensus 115 ~---~~~~fD~Ii~~~p~~--------------~~~~-------~~~~~l~~~~~~L----kpgG~l~i~~~~~---~~~ 163 (194)
T d1dusa_ 115 V---KDRKYNKIITNPPIR--------------AGKE-------VLHRIIEEGKELL----KDNGEIWVVIQTK---QGA 163 (194)
T ss_dssp C---TTSCEEEEEECCCST--------------TCHH-------HHHHHHHHHHHHE----EEEEEEEEEEEST---HHH
T ss_pred h---ccCCceEEEEcccEE--------------ecch-------hhhhHHHHHHHhc----CcCcEEEEEEeCc---CCH
Confidence 2 347899999999941 1111 2345788888886 9999987654333 233
Q ss_pred HHHHHHHhc
Q 016730 322 AVIDYALKK 330 (384)
Q Consensus 322 ~vv~~~l~~ 330 (384)
..+...+++
T Consensus 164 ~~~~~~l~~ 172 (194)
T d1dusa_ 164 KSLAKYMKD 172 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.47 E-value=7.9e-14 Score=126.35 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=92.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
+.+..++++||++|||+|||+|..|.++++.. +.|+|+|+|+.+++.+++++...|+.++.++++|+.+++ ++++
T Consensus 7 ~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~--~~~~ 81 (234)
T d1xxla_ 7 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP--FPDD 81 (234)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC--SCTT
T ss_pred HHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccc--cccc
Confidence 45677889999999999999999999998763 589999999999999999999999999999999998876 3458
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+||.|++- +++- |...+ .++|+++.+.| ||||++++++-
T Consensus 82 ~fD~v~~~------~~l~------~~~d~----------~~~l~~~~r~L----kpgG~~~~~~~ 120 (234)
T d1xxla_ 82 SFDIITCR------YAAH------HFSDV----------RKAVREVARVL----KQDGRFLLVDH 120 (234)
T ss_dssp CEEEEEEE------SCGG------GCSCH----------HHHHHHHHHHE----EEEEEEEEEEE
T ss_pred ccceeeee------ceee------cccCH----------HHHHHHHHHee----CCCcEEEEEEc
Confidence 99999972 2221 11111 34678888876 99999998653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.9e-13 Score=126.19 Aligned_cols=142 Identities=11% Similarity=0.084 Sum_probs=106.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
..+.+|||+|||+|..++.++...++ ..|+|+|+|+..++.+++|++++|++++.++.+|..... .+.+||.|+++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~---~~~~fDlIvsN 182 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---AGQQFAMIVSN 182 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---TTCCEEEEEEC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc---CCCceeEEEec
Confidence 44668999999999999999988765 799999999999999999999999999999999976532 23689999999
Q ss_pred CCCCCCC-------cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 257 APCSGTG-------VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 257 aPCSg~G-------~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
||+-... +.+..|...+.-.. .....-++++..+.++| +|||.++.- +.. ...+.|..+++
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~----dGl~~~~~i~~~a~~~L----~~~G~l~lE---ig~-~q~~~v~~~l~ 250 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAAD----SGMADIVHIIEQSRNAL----VSGGFLLLE---HGW-QQGEAVRQAFI 250 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHH----HHTHHHHHHHHHHGGGE----EEEEEEEEE---CCS-SCHHHHHHHHH
T ss_pred chhhhhhhhcccccccccchhhhccccc----ccchHHHHHHHHHHHhc----CCCCEEEEE---ECc-hHHHHHHHHHH
Confidence 9985443 33334443332222 22345567888988886 999999873 222 34456666666
Q ss_pred cCCCE
Q 016730 330 KRDVK 334 (384)
Q Consensus 330 ~~~~~ 334 (384)
+.++.
T Consensus 251 ~~gf~ 255 (274)
T d2b3ta1 251 LAGYH 255 (274)
T ss_dssp HTTCT
T ss_pred HCCCC
Confidence 66543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.39 E-value=1.4e-12 Score=117.03 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=89.2
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.++++++|||+|||+|..|.+++... .+|+|+|+|+.+++.+++++++.|..++.+.++|+.+++ +..++|
T Consensus 8 l~~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~--~~~~~f 82 (231)
T d1vl5a_ 8 MQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--FTDERF 82 (231)
T ss_dssp HHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--SCTTCE
T ss_pred HHhcCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccccccccccccccccc--cccccc
Confidence 345678899999999999999998887652 589999999999999999999999999999999999876 334799
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|.|++-- ++ .+...+ .++|.++.++| ||||+++.++-+
T Consensus 83 D~v~~~~------~l------~~~~d~----------~~~l~~~~r~L----kpgG~l~i~~~~ 120 (231)
T d1vl5a_ 83 HIVTCRI------AA------HHFPNP----------ASFVSEAYRVL----KKGGQLLLVDNS 120 (231)
T ss_dssp EEEEEES------CG------GGCSCH----------HHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred ccccccc------cc------cccCCH----------HHHHHHHHHhc----CCCcEEEEEeCC
Confidence 9998732 11 122122 34678888886 999999986543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.37 E-value=9.4e-13 Score=117.62 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=92.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++..|||+|||+|..+.++|+..++ ..++|+|+++.++..+.+++++.|++|+.++.+|+..+...+..+.+|.|++.-
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 4558999999999999999998754 789999999999999999999999999999999998876556668899999876
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|. |..+.......+ .+..+|..+.+.| ||||+|...|
T Consensus 108 p~---------P~~k~~h~k~Rl-----~~~~~l~~~~r~L----kpgG~l~i~T 144 (204)
T d2fcaa1 108 SD---------PWPKKRHEKRRL-----TYSHFLKKYEEVM----GKGGSIHFKT 144 (204)
T ss_dssp CC---------CCCSGGGGGGST-----TSHHHHHHHHHHH----TTSCEEEEEE
T ss_pred cc---------ccchhhhcchhh-----hHHHHHHHHHHhC----CCCcEEEEEE
Confidence 63 221111111111 3456788888886 9999999887
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=7.3e-13 Score=122.24 Aligned_cols=135 Identities=18% Similarity=0.210 Sum_probs=97.8
Q ss_pred CcCcchhhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 165 ~ss~l~~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
+...++..+|. .++|++|||+|||+|..+..++.+ ..+|+|+|+|+.+++.+++|++++|+++ .+..+|....
T Consensus 105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~~-~~~~~d~~~~- 179 (254)
T d2nxca1 105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAA- 179 (254)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHH-
T ss_pred chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCce-eEEecccccc-
Confidence 44556565554 678999999999999988776653 2589999999999999999999999964 5667776543
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHH
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~ 322 (384)
...++||.|+++.. .. ...+++..+.+.| ||||+|+.|. + ..+..+
T Consensus 180 --~~~~~fD~V~ani~------------------~~-------~l~~l~~~~~~~L----kpGG~lilSg--i-l~~~~~ 225 (254)
T d2nxca1 180 --LPFGPFDLLVANLY------------------AE-------LHAALAPRYREAL----VPGGRALLTG--I-LKDRAP 225 (254)
T ss_dssp --GGGCCEEEEEEECC------------------HH-------HHHHHHHHHHHHE----EEEEEEEEEE--E-EGGGHH
T ss_pred --ccccccchhhhccc------------------cc-------cHHHHHHHHHHhc----CCCcEEEEEe--c-chhhHH
Confidence 22378999998632 11 1234556666665 9999999864 2 235556
Q ss_pred HHHHHHhcCCCEEeec
Q 016730 323 VIDYALKKRDVKLVPC 338 (384)
Q Consensus 323 vv~~~l~~~~~~l~~~ 338 (384)
.|...+++.+++++..
T Consensus 226 ~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 226 LVREAMAGAGFRPLEE 241 (254)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEE
Confidence 6667777888887653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.36 E-value=2.8e-12 Score=116.56 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=92.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE-
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR- 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~- 252 (384)
+.++||++|||+|||+|..+.|+|...+ .|.|+|+|+|+.+++.+++++++. .|+..+..|+....... ...+|.
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~-~~~~~v~ 145 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYA-NIVEKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGT-TTCCCEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccc-cccceeE
Confidence 3478999999999999999999999865 489999999999999999887654 46677788888765443 244555
Q ss_pred -EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec--c----CCccccHHHHH
Q 016730 253 -VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC--S----IMVTENEAVID 325 (384)
Q Consensus 253 -VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC--S----i~~~ENe~vv~ 325 (384)
++.|..+ .. ....++.++.++| ||||+++.+.- | ..+++-.+.+.
T Consensus 146 ~i~~~~~~-----------------~~-------~~~~~l~~~~r~L----KpgG~~~i~~k~~~~d~~~~~~~~~~e~~ 197 (230)
T d1g8sa_ 146 VIYEDVAQ-----------------PN-------QAEILIKNAKWFL----KKGGYGMIAIKARSIDVTKDPKEIFKEQK 197 (230)
T ss_dssp EEEECCCS-----------------TT-------HHHHHHHHHHHHE----EEEEEEEEEEEGGGTCSSSCHHHHHHHHH
T ss_pred Eeeccccc-----------------hH-------HHHHHHHHHHHhc----ccCceEEEEeeccccCCCCCHHHHHHHHH
Confidence 4444331 01 1234577777775 99999887631 2 22222223333
Q ss_pred HHHhcCCCEEeec
Q 016730 326 YALKKRDVKLVPC 338 (384)
Q Consensus 326 ~~l~~~~~~l~~~ 338 (384)
..|+..+|+++..
T Consensus 198 ~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 198 EILEAGGFKIVDE 210 (230)
T ss_dssp HHHHHHTEEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 5566678887653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.4e-12 Score=118.85 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=89.3
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLG 246 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~ 246 (384)
..++..+.++||++|||+|||+|+.+..+++..+ ..|+|+|+|+.+++.++++....|+.+ +.+..+|+..+. .
T Consensus 23 ~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~---~ 97 (245)
T d1nkva_ 23 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV---A 97 (245)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC---C
T ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc---c
Confidence 3456778889999999999999999998887653 689999999999999999999999865 899999998863 2
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.++||.|++- +++..-+ .. .++|..+.+.| ||||+++++.
T Consensus 98 ~~~fD~v~~~------~~~~~~~------d~----------~~~l~~~~r~L----kPGG~l~i~~ 137 (245)
T d1nkva_ 98 NEKCDVAACV------GATWIAG------GF----------AGAEELLAQSL----KPGGIMLIGE 137 (245)
T ss_dssp SSCEEEEEEE------SCGGGTS------SS----------HHHHHHHTTSE----EEEEEEEEEE
T ss_pred cCceeEEEEE------ehhhccC------CH----------HHHHHHHHHHc----CcCcEEEEEe
Confidence 3789999862 1111111 11 23677777775 9999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6.7e-13 Score=120.25 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=71.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-----ceEEEEecCCCCcccccCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-----TNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-----~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.++||++|||+|||+|..|..||++++..+.|+++|++++.++.+++|+++.++ .++.+..+|+...... ...
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~--~~~ 150 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE--EAP 150 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG--GCC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch--hhh
Confidence 678999999999999999999999998889999999999999999999998765 4678888998765433 378
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
||+|++++.
T Consensus 151 fD~I~~~~~ 159 (224)
T d1i1na_ 151 YDAIHVGAA 159 (224)
T ss_dssp EEEEEECSB
T ss_pred hhhhhhhcc
Confidence 999999765
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=3.3e-12 Score=122.92 Aligned_cols=89 Identities=22% Similarity=0.206 Sum_probs=75.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLN 248 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~~~ 248 (384)
..++++.++++|||++||.|..|+.||+. ..+|+|+|.++..++.+++|++.+|++|+.++.+|....... ....
T Consensus 205 ~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~ 281 (358)
T d1uwva2 205 LEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 281 (358)
T ss_dssp HHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred HHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhc
Confidence 34457888999999999999999998875 358999999999999999999999999999999988764321 2236
Q ss_pred CCCEEEEcCCCCCC
Q 016730 249 TVDRVLLDAPCSGT 262 (384)
Q Consensus 249 ~fD~VllDaPCSg~ 262 (384)
.||+|++|||-+|.
T Consensus 282 ~~d~vilDPPR~G~ 295 (358)
T d1uwva2 282 GFDKVLLDPARAGA 295 (358)
T ss_dssp CCSEEEECCCTTCC
T ss_pred cCceEEeCCCCccH
Confidence 79999999997776
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.34 E-value=2.7e-12 Score=119.45 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=89.4
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
..+.+|.+|||+|||+|+.+.+|++..+ ..|+|+|+|+.+++.+++++...|+. ++.+.++|+.+++ ++.++||+
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~--~~~~sfD~ 138 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--CEDNSYDF 138 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--SCTTCEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhccccccccccccccccccccccc--ccccccch
Confidence 3577899999999999999999998753 58999999999999999999999996 6999999999886 33478999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|++- +++-. ..++ .++|..+.++| ||||++++++....
T Consensus 139 V~~~------~~l~h------~~d~----------~~~l~~~~~~L----kpgG~l~~~~~~~~ 176 (282)
T d2o57a1 139 IWSQ------DAFLH------SPDK----------LKVFQECARVL----KPRGVMAITDPMKE 176 (282)
T ss_dssp EEEE------SCGGG------CSCH----------HHHHHHHHHHE----EEEEEEEEEEEEEC
T ss_pred hhcc------chhhh------ccCH----------HHHHHHHHHhc----CCCcEEEEEEeecC
Confidence 9862 22211 1111 24677888876 99999998865443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.34 E-value=9.2e-13 Score=112.11 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=67.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.|.+|||+|||+|+.++.++.+ +..+|+++|.++..++.+++|++.+|+.+ +.++++|+..+.... ..+||+|++|
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~-~~~fDiIf~D 90 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-TGRFDLVFLD 90 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-CSCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc-ccccceeEec
Confidence 5889999999999988866554 44699999999999999999999999976 899999988764333 3789999999
Q ss_pred CCC
Q 016730 257 APC 259 (384)
Q Consensus 257 aPC 259 (384)
||.
T Consensus 91 PPy 93 (152)
T d2esra1 91 PPY 93 (152)
T ss_dssp CSS
T ss_pred hhh
Confidence 994
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.33 E-value=4.7e-12 Score=113.01 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=93.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+..|||+|||.|..+.++|+..++ ..++|+|+++.++..+.+++.+.|++|+.+..+|+..+...++...+|.|++.-
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 3458999999999999999998765 789999999999999999999999999999999999887666678999999866
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
| +|..|.......+ .|..+|....+.| ||||.|..+|
T Consensus 110 P---------dPw~K~~h~krRl-----~~~~~l~~~~~~L----kpgG~l~i~T 146 (204)
T d1yzha1 110 S---------DPWPKKRHEKRRL-----TYKTFLDTFKRIL----PENGEIHFKT 146 (204)
T ss_dssp C---------CCCCSGGGGGGST-----TSHHHHHHHHHHS----CTTCEEEEEE
T ss_pred c---------ccccchhhhhhhh-----hHHHHHHHHHHhC----CCCcEEEEEE
Confidence 6 3433221111111 3456778878875 9999998887
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=6.3e-12 Score=111.82 Aligned_cols=125 Identities=21% Similarity=0.194 Sum_probs=87.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+...|.+|||+|||+|+.+..++.. +...|+|+|+|+.+++.+++|++.++.. ..++..|+..++ ++||+|
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~-~~~~~~d~~~~~-----~~fD~V 113 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK-FKVFIGDVSEFN-----SRVDIV 113 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTS-EEEEESCGGGCC-----CCCSEE
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCC-ceEEECchhhhC-----CcCcEE
Confidence 34457899999999999998876543 4468999999999999999999999985 567788876643 689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
++||||. ...++++. ..|..++.. +..+|+-+.... +....++.+....++
T Consensus 114 i~nPP~~---~~~~~~d~-----------------~~l~~~~~~--------~~~v~~ih~~~~-~~~~~i~~~~~~~g~ 164 (201)
T d1wy7a1 114 IMNPPFG---SQRKHADR-----------------PFLLKAFEI--------SDVVYSIHLAKP-EVRRFIEKFSWEHGF 164 (201)
T ss_dssp EECCCCS---SSSTTTTH-----------------HHHHHHHHH--------CSEEEEEEECCH-HHHHHHHHHHHHTTE
T ss_pred EEcCccc---cccccccH-----------------HHHHHHHhh--------cccchhcccchH-HHHHHHHHHHhhcCc
Confidence 9999984 33333332 234455543 236677665432 334455656666665
Q ss_pred EE
Q 016730 334 KL 335 (384)
Q Consensus 334 ~l 335 (384)
.+
T Consensus 165 ~i 166 (201)
T d1wy7a1 165 VV 166 (201)
T ss_dssp EE
T ss_pred eE
Confidence 44
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.29 E-value=5.4e-12 Score=113.43 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=74.9
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+|++++|++|||+|||+|..|+.|+.+.+ +.|+++|++++..+.+++|++++|+.|+.+.++|+...... ..+
T Consensus 70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~--~~p 145 (215)
T d1jg1a_ 70 MLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP--KAP 145 (215)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--GCC
T ss_pred HHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc--cCc
Confidence 45668899999999999999999999998874 57999999999999999999999999999999999875332 378
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
||+|++.+.
T Consensus 146 fD~Iiv~~a 154 (215)
T d1jg1a_ 146 YDVIIVTAG 154 (215)
T ss_dssp EEEEEECSB
T ss_pred ceeEEeecc
Confidence 999999654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.26 E-value=1.9e-11 Score=108.44 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=81.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
+++.+|||+|||+|..|.++++. ...|+|+|+|+.+++.+++++...+.. +..++.|+.+++. ..++||+|++-
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~-~~~~~~d~~~l~~--~~~~fD~I~~~ 109 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESN-VEFIVGDARKLSF--EDKTFDYVIFI 109 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCC-CEEEECCTTSCCS--CTTCEEEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccccc-ccccccccccccc--cCcCceEEEEe
Confidence 57789999999999999998874 358999999999999999999888854 5667889998763 34789999972
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+++. + ....+ ..++|+.+.++| ||||+++..+
T Consensus 110 ------~~l~------~-~~~~d-------~~~~l~~i~~~L----kpgG~lii~~ 141 (226)
T d1ve3a1 110 ------DSIV------H-FEPLE-------LNQVFKEVRRVL----KPSGKFIMYF 141 (226)
T ss_dssp ------SCGG------G-CCHHH-------HHHHHHHHHHHE----EEEEEEEEEE
T ss_pred ------cchh------h-CChhH-------HHHHHHHHHHHc----CcCcEEEEEE
Confidence 1211 1 12222 245788888886 9999998764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=4.2e-12 Score=110.13 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=61.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc--ccccCCCCCCEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL--PKVLGLNTVDRV 253 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~--~~~~~~~~fD~V 253 (384)
..+|.+|||+|||+|+.++.++.. ...|+++|+|+.+++.+++|++.+|+.+ .+...|+..+ .......+||.|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccCCcccee
Confidence 357889999999999988765553 3589999999999999999999999965 3334444332 112234689999
Q ss_pred EEcCCC
Q 016730 254 LLDAPC 259 (384)
Q Consensus 254 llDaPC 259 (384)
++|||+
T Consensus 115 f~DPPY 120 (171)
T d1ws6a1 115 FMAPPY 120 (171)
T ss_dssp EECCCT
T ss_pred EEcccc
Confidence 999996
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.23 E-value=3.5e-11 Score=105.88 Aligned_cols=109 Identities=19% Similarity=0.128 Sum_probs=86.0
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+++| +|||+|||+|..+..+++. ...|+|+|+|+..++.++++.+..|++++.+...|...+.. .+.||.|++
T Consensus 29 ~~~g-rvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPG-RTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF---DGEYDFILS 101 (198)
T ss_dssp SCSC-EEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC---CCCEEEEEE
T ss_pred CCCC-cEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc---cccccEEEE
Confidence 3445 9999999999999999885 25899999999999999999999999999999999887653 378999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.... ....+.+ ..++|..+.+.| +|||++++++..-
T Consensus 102 ~~~~-------------~~~~~~~-------~~~~l~~~~~~L----~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 102 TVVM-------------MFLEAQT-------IPGLIANMQRCT----KPGGYNLIVAAMD 137 (198)
T ss_dssp ESCG-------------GGSCTTH-------HHHHHHHHHHTE----EEEEEEEEEEEBC
T ss_pred eeee-------------ecCCHHH-------HHHHHHHHHHHc----CCCcEEEEEEecC
Confidence 5431 1111111 245788888886 9999999887653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.1e-11 Score=109.31 Aligned_cols=137 Identities=11% Similarity=0.062 Sum_probs=99.6
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+...++.+|||+|||+|..+.++++.. ...|+++|+|+.+++.+++++...+..++.+.++|+.+++. ..++||.|
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~--~~~~fD~I 131 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--EPDSYDVI 131 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--CSSCEEEE
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccccccccccccccccc--cccccccc
Confidence 345678899999999999888775543 24899999999999999999999888899999999988763 34799999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc------------cH
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE------------NE 321 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E------------Ne 321 (384)
++- +++. .....+ ..++|..+.+.| ||||.++.++-. .... +.
T Consensus 132 ~~~------~~l~-------h~~~~~-------~~~~l~~i~~~L----k~~G~~~i~~~~-~~~~~~~~~~~~~~~~~~ 186 (222)
T d2ex4a1 132 WIQ------WVIG-------HLTDQH-------LAEFLRRCKGSL----RPNGIIVIKDNM-AQEGVILDDVDSSVCRDL 186 (222)
T ss_dssp EEE------SCGG-------GSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEE-BSSSEEEETTTTEEEEBH
T ss_pred ccc------cccc-------cchhhh-------hhhHHHHHHHhc----CCcceEEEEEcc-cccccccccCCceeeCCH
Confidence 973 2221 112222 245778888876 999999886421 1111 35
Q ss_pred HHHHHHHhcCCCEEeecC
Q 016730 322 AVIDYALKKRDVKLVPCG 339 (384)
Q Consensus 322 ~vv~~~l~~~~~~l~~~~ 339 (384)
+.+..++++.|++++...
T Consensus 187 ~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 187 DVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp HHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 667777888888877643
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.6e-11 Score=107.54 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=68.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+|.+|||+|||+|..++..+.+ +...|+++|.|+..++.+++|++.+++.++.+++.|+..+... ...+||.|++||
T Consensus 43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~-~~~~fDlIf~DP 119 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-KGTPHNIVFVDP 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-CCCCEEEEEECC
T ss_pred chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccc-cccccCEEEEcC
Confidence 5789999999999988876664 4468999999999999999999999999999999998765432 247899999999
Q ss_pred CC
Q 016730 258 PC 259 (384)
Q Consensus 258 PC 259 (384)
|+
T Consensus 120 PY 121 (183)
T d2fpoa1 120 PF 121 (183)
T ss_dssp SS
T ss_pred cc
Confidence 96
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.20 E-value=1.2e-11 Score=111.74 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=68.5
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...|++++|++|||+|||+|..|..|+.+. ++|+++|+++..++.+++++.. ..|+.++.+|+...... .++|
T Consensus 63 l~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~--~~pf 135 (224)
T d1vbfa_ 63 LDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEE--EKPY 135 (224)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGG--GCCE
T ss_pred HHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--ccccccccCchhhcchh--hhhH
Confidence 467789999999999999999999998874 6899999999999999998764 46899999998764322 3789
Q ss_pred CEEEEcCC
Q 016730 251 DRVLLDAP 258 (384)
Q Consensus 251 D~VllDaP 258 (384)
|+|++.+.
T Consensus 136 D~Iiv~~a 143 (224)
T d1vbfa_ 136 DRVVVWAT 143 (224)
T ss_dssp EEEEESSB
T ss_pred HHHHhhcc
Confidence 99999765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.19 E-value=7.6e-11 Score=105.68 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=86.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+++.+|||+|||+|..|..|++... +..+|+|+|+|+.+++.++++++..+.. ++.+.+.|...++. ..+|.|
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~----~~~d~i 112 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMV 112 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC----CSEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc----ccceee
Confidence 35788999999999999999998764 3469999999999999999999987754 47788888876542 578988
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++- +.... .+.++ ..++|+++.+.| ||||.++.++-+...
T Consensus 113 ~~~---~~l~~----------~~~~d-------~~~~l~~i~~~L----kpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 113 ILN---FTLQF----------LPPED-------RIALLTKIYEGL----NPNGVLVLSEKFRFE 152 (225)
T ss_dssp EEE---SCGGG----------SCGGG-------HHHHHHHHHHHE----EEEEEEEEEEECCCS
T ss_pred EEe---eeccc----------cChhh-------HHHHHHHHHHhC----CCCceeecccccccc
Confidence 862 11111 12222 235788899986 999999998766543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=5.4e-11 Score=107.70 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=85.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
...++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.+++++...+. ++.+.++|+.+++. + ++||.|+
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~--~-~~fD~I~ 110 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF--K-NEFDAVT 110 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC--C-SCEEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc-cchheehhhhhccc--c-cccchHh
Confidence 4556779999999999999988875 25899999999999999999999887 58889999988763 2 6899998
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+ ++. ++ ...+..+ ..+.|.++.+.| ||||+++......
T Consensus 111 ~----~~~-~~-------~~~~~~~-------~~~~L~~~~~~L----kpgG~lii~~~~~ 148 (251)
T d1wzna1 111 M----FFS-TI-------MYFDEED-------LRKLFSKVAEAL----KPGGVFITDFPCW 148 (251)
T ss_dssp E----CSS-GG-------GGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEC-
T ss_pred h----hhh-hh-------hcCChHH-------HHHHHHHHHHHc----CCCcEEEEEeccc
Confidence 7 111 11 1112222 245788888886 9999999887654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.19 E-value=9.2e-11 Score=109.95 Aligned_cols=125 Identities=12% Similarity=0.061 Sum_probs=92.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 247 (384)
+.+..+++++|++|||+|||.|+.+.++|+..+ ..|+++++|++.++.+++.++..|+.+ +.+...|.... .
T Consensus 52 ~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~-----~ 124 (291)
T d1kpia_ 52 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----D 124 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----C
T ss_pred HHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc-----c
Confidence 355667899999999999999999999998874 689999999999999999999999875 66666665322 3
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++||+|++ .|++-.-++..-.. ..+....+++.+.++| ||||+++..|.++..
T Consensus 125 ~~fD~i~s------ie~~eH~~~~~~~~-------~~~~~~~~f~~i~~~L----kpgG~~~l~~i~~~~ 177 (291)
T d1kpia_ 125 EPVDRIVS------LGAFEHFADGAGDA-------GFERYDTFFKKFYNLT----PDDGRMLLHTITIPD 177 (291)
T ss_dssp CCCSEEEE------ESCGGGTTCCSSCC-------STTHHHHHHHHHHHTS----CTTCEEEEEEEECCC
T ss_pred cccceEee------chhHHhcchhhhhh-------HHHHHHHHHHHHHHhC----CCCCceEEEEEeccC
Confidence 78999986 23332222110000 0122356788888885 999999998887644
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.6e-12 Score=114.65 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=84.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+|.+|||+|||+|..+..++... ...|+++|+|+..++.++++.++.+. ++.++..|+......+..++||.|+.|
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYD 128 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccccccccceeec
Confidence 579999999999999998888753 25799999999999999999887664 466667777665444556899999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+..+..... . .......++.+.++| ||||+++|.++
T Consensus 129 ~~~~~~~~~-~----------------~~~~~~~~~~~~r~L----kpGG~~~~~~~ 164 (229)
T d1zx0a1 129 TYPLSEETW-H----------------THQFNFIKNHAFRLL----KPGGVLTYCNL 164 (229)
T ss_dssp CCCCBGGGT-T----------------THHHHHHHHTHHHHE----EEEEEEEECCH
T ss_pred ccccccccc-c----------------ccCHHHHHHHHHHHc----CCCcEEEEEec
Confidence 864333221 1 112345677777875 99999998543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.18 E-value=4.4e-11 Score=109.30 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=82.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++|.+|||+|||+|+.+..++.. +.+.|+|+|+|+.+++.++++.+.++.. ++.+..+|+...+... .+.||+|+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-~~~fD~V~ 98 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-GKEFDVIS 98 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-SSCEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-cccceEEE
Confidence 457899999999999988877765 3358999999999999999999888765 6889999987654322 36899998
Q ss_pred EcCCCCCCCcCCCCchhhcc-CCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 255 LDAPCSGTGVISKDESVKTS-KSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~-~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+-- ++ .+. .+.++ ...++..+.+.| ||||+++.++
T Consensus 99 ~~~------~l------~~~~~~~~~-------~~~~l~~i~~~L----k~gG~~i~~~ 134 (252)
T d1ri5a_ 99 SQF------SF------HYAFSTSES-------LDIAQRNIARHL----RPGGYFIMTV 134 (252)
T ss_dssp EES------CG------GGGGSSHHH-------HHHHHHHHHHTE----EEEEEEEEEE
T ss_pred Ecc------ee------eecCCCHHH-------HHHHHHHHhcee----CCCCEEEEEe
Confidence 721 11 111 22222 355777788875 9999998765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=1.1e-10 Score=108.77 Aligned_cols=112 Identities=9% Similarity=0.108 Sum_probs=85.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~ 248 (384)
....|+++||++|||+|||.|+.+.++++..+ ..|+++|+|+..++.+++++++.|+.. +.+...|...++ +
T Consensus 44 ~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~-----~ 116 (280)
T d2fk8a1 44 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----E 116 (280)
T ss_dssp HHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----C
T ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc-----c
Confidence 45556899999999999999999999888764 589999999999999999999999854 666667765543 6
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+||.|++ .+++-.- .... ...+++.+.++| ||||+++..+
T Consensus 117 ~fD~i~s------i~~~eh~-------~~~~-------~~~~f~~i~~~L----kpgG~~~i~~ 156 (280)
T d2fk8a1 117 PVDRIVS------IEAFEHF-------GHEN-------YDDFFKRCFNIM----PADGRMTVQS 156 (280)
T ss_dssp CCSEEEE------ESCGGGT-------CGGG-------HHHHHHHHHHHS----CTTCEEEEEE
T ss_pred chhhhhH------hhHHHHh-------hhhh-------HHHHHHHHHhcc----CCCceEEEEE
Confidence 8999986 2222111 1111 235677777775 9999999866
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.16 E-value=5.5e-11 Score=107.87 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=81.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..++++. ..|+|+|.|+.+++.+++++...|. ++.++++|+..++. .++||.|++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~---~~~fD~i~~-- 107 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---NRKFDLITC-- 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---SCCEEEEEE--
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCc-cceeeccchhhhcc---cccccccce--
Confidence 45789999999999999888752 4799999999999999999998887 58899999988753 268999996
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.++..+ +..+.++ ..++|..+.+.| ||||.+++..
T Consensus 108 ~~~~~~---------~~~~~~~-------~~~~l~~~~~~L----kpgG~~i~~~ 142 (246)
T d1y8ca_ 108 CLDSTN---------YIIDSDD-------LKKYFKAVSNHL----KEGGVFIFDI 142 (246)
T ss_dssp CTTGGG---------GCCSHHH-------HHHHHHHHHTTE----EEEEEEEEEE
T ss_pred eeeeee---------ccCCHHH-------HHHHHHHHHHhC----CCCeEEEEEe
Confidence 122222 2223333 245788888886 9999999754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.16 E-value=7.3e-11 Score=104.46 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=80.1
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
+..++--.|.+|||+|||+|..+..++.+ +...|+++|+|+..++.+++|+. ++.+++.|...++ ++|
T Consensus 41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----~~f 108 (197)
T d1ne2a_ 41 IYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----GKY 108 (197)
T ss_dssp HHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----CCE
T ss_pred HHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----Ccc
Confidence 33344447999999999999987655443 33589999999999999999863 5678889987654 679
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~ 330 (384)
|.|++|||. |+.+++.| +.+|+.+... +.++|+-+ .....+.+....+.
T Consensus 109 D~Vi~NPPf---g~~~~~~D-----------------~~fl~~a~~~--------~~~iy~ih---~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 109 DTWIMNPPF---GSVVKHSD-----------------RAFIDKAFET--------SMWIYSIG---NAKARDFLRREFSA 157 (197)
T ss_dssp EEEEECCCC----------C-----------------HHHHHHHHHH--------EEEEEEEE---EGGGHHHHHHHHHH
T ss_pred eEEEeCccc---chhhhhch-----------------HHHHHHHHhc--------CCeEEEeh---hhhHHHHHHHHhhc
Confidence 999999994 44444333 2345555543 57888654 45666777755544
Q ss_pred C
Q 016730 331 R 331 (384)
Q Consensus 331 ~ 331 (384)
.
T Consensus 158 ~ 158 (197)
T d1ne2a_ 158 R 158 (197)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.15 E-value=1.5e-11 Score=111.05 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC-----ceEEEEeCCHHHHHHHHHHHHHc-----CCceEEEEecCCCCcccc
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT-----GLIYANEMKASRLKSLTANLHRM-----GVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~-----g~V~a~D~~~~rl~~l~~n~~r~-----g~~~v~~~~~D~~~~~~~ 244 (384)
++++|++|||+|||+|..|..|+.+++.. ++|+++|++++.++.+++|+... ++.|+.+..+|+......
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 68899999999999999999999997643 38999999999999999987654 567899999998865332
Q ss_pred cCCCCCCEEEEcCCC
Q 016730 245 LGLNTVDRVLLDAPC 259 (384)
Q Consensus 245 ~~~~~fD~VllDaPC 259 (384)
.+.||+|++++.+
T Consensus 157 --~~~fD~Iiv~~a~ 169 (223)
T d1r18a_ 157 --NAPYNAIHVGAAA 169 (223)
T ss_dssp --GCSEEEEEECSCB
T ss_pred --ccceeeEEEEeec
Confidence 3789999998764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.15 E-value=2.7e-11 Score=106.03 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=67.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccc--cCCCCCCEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKV--LGLNTVDRV 253 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~--~~~~~fD~V 253 (384)
.+|.+|||+|||+|+.++..+.. +...|+++|.|+..++.+++|++.++.. ++.+.+.|+..+... ....+||.|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 36899999999999999876664 4468999999999999999999999986 689999998765322 133689999
Q ss_pred EEcCCC
Q 016730 254 LLDAPC 259 (384)
Q Consensus 254 llDaPC 259 (384)
++|||.
T Consensus 118 flDPPY 123 (182)
T d2fhpa1 118 LLDPPY 123 (182)
T ss_dssp EECCCG
T ss_pred Eechhh
Confidence 999995
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.14 E-value=2.8e-11 Score=107.64 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=103.5
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
.+.+.++.+++|++|||.|||+|+....+.+.+.....++++|+++..+.. .....+.++|...... .
T Consensus 9 ~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~~---~ 76 (223)
T d2ih2a1 9 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWEP---G 76 (223)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCCC---S
T ss_pred HHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhcccc---c
Confidence 355667788899999999999999998888888777789999999865422 1234556777655432 3
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHH-------HHHHHHHHHHHHHHHchhccCCCCcEEEEEe-ccCCccc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ-------KCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMVTE 319 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~-------~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT-CSi~~~E 319 (384)
..||.|+.|||+.........+............ ....++..++.+++++| ++||++++.+ +|+...+
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~l----k~~G~~~~I~p~~~l~~~ 152 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL----KPGGVLVFVVPATWLVLE 152 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE----EEEEEEEEEEEGGGGTCG
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhc----ccCCceEEEEeeeeccCc
Confidence 6899999999987666544332211110000000 11225667889999986 9999998776 7777777
Q ss_pred cHHHHH-HHHhcCCCE
Q 016730 320 NEAVID-YALKKRDVK 334 (384)
Q Consensus 320 Ne~vv~-~~l~~~~~~ 334 (384)
+...+. +++++..++
T Consensus 153 ~~~~lR~~l~~~~~i~ 168 (223)
T d2ih2a1 153 DFALLREFLAREGKTS 168 (223)
T ss_dssp GGHHHHHHHHHHSEEE
T ss_pred chHHHHHHHHhcCCEE
Confidence 777776 555554444
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.13 E-value=1.3e-10 Score=108.14 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=87.9
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+..+.++.+|||+|||+|..+..++...+..+.|+|+|+|+.+++.+++++...+. ++.+.+.|+..++. . ++||
T Consensus 21 ~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~--~-~~fD 96 (281)
T d2gh1a1 21 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL--N-DKYD 96 (281)
T ss_dssp TTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC--S-SCEE
T ss_pred HHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccc--c-CCce
Confidence 334566778999999999999999998887667999999999999999999998887 68888999988753 2 5799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|++..- + .+...+ .++|.++.+.| ||||.++..+
T Consensus 97 ~v~~~~~------l------~~~~d~----------~~~l~~~~~~L----kpgG~lii~~ 131 (281)
T d2gh1a1 97 IAICHAF------L------LHMTTP----------ETMLQKMIHSV----KKGGKIICFE 131 (281)
T ss_dssp EEEEESC------G------GGCSSH----------HHHHHHHHHTE----EEEEEEEEEE
T ss_pred EEEEehh------h------hcCCCH----------HHHHHHHHHHc----CcCcEEEEEE
Confidence 9997432 1 111122 34688888886 9999998765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.11 E-value=1.3e-10 Score=108.61 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=90.2
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 247 (384)
..+..|+++||++|||+|||.|+.+.++|+..+ ++|+++.+|+..++.+++++++.|+. ++.+...|...++
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~----- 125 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----- 125 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----
T ss_pred HHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-----
Confidence 456667899999999999999999999999864 69999999999999999999998875 5888888876654
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
++||+|+. .|++-.-. . +....+++.+.++| ||||+++..|.+.
T Consensus 126 ~~fD~i~s------i~~~eh~~-------~-------~~~~~~~~~~~r~L----kpgG~~~l~~i~~ 169 (285)
T d1kpga_ 126 EPVDRIVS------IGAFEHFG-------H-------ERYDAFFSLAHRLL----PADGVMLLHTITG 169 (285)
T ss_dssp CCCSEEEE------ESCGGGTC-------T-------TTHHHHHHHHHHHS----CTTCEEEEEEEEE
T ss_pred ccccceee------ehhhhhcC-------c-------hhHHHHHHHHHhhc----CCCCcEEEEEEec
Confidence 68999986 23221100 0 11235778888875 9999999877653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=8.7e-11 Score=102.73 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=103.3
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGL 247 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~~ 247 (384)
..+|.+++|+.++|+++|.||.|..+++. .|+|+|+|.++..++.++.. -..++.+++.+..++... ...
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHcCC
Confidence 45678999999999999999998888763 58999999999998887653 345788888877765432 223
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+.+|.||+|-.+|..++= +|+ +-...+...|..+.+.+ ++||++++.|. +..|+ ..|..+
T Consensus 84 ~~vdgIl~DLGvSs~qld--~~~-----------re~~~~~~~L~~~~~~l----k~gg~~~ii~f--hs~Ed-~ivk~~ 143 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLD--DPS-----------DELNALKEFLEQAAEVL----APGGRLVVIAF--HSLED-RVVKRF 143 (182)
T ss_dssp SCEEEEEEECSCCHHHHH--CGG-----------THHHHHHHHHHHHHHHE----EEEEEEEEEEC--SHHHH-HHHHHH
T ss_pred CccCEEEEEccCCHHHhh--cch-----------HHHHHHHHHHHHHHhhh----CCCCeEEEEec--ccchh-HHHHHH
Confidence 689999999988777642 111 11233455889999986 99999999875 55554 566667
Q ss_pred HhcCCCEEee
Q 016730 328 LKKRDVKLVP 337 (384)
Q Consensus 328 l~~~~~~l~~ 337 (384)
+++..++++.
T Consensus 144 ~~e~~~k~i~ 153 (182)
T d1wg8a2 144 LRESGLKVLT 153 (182)
T ss_dssp HHHHCSEESC
T ss_pred Hhhccceecc
Confidence 7777777654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.07 E-value=1.7e-10 Score=99.79 Aligned_cols=117 Identities=7% Similarity=-0.028 Sum_probs=82.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC------------ceEEEEecCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV------------TNTIVCNYDGNE 240 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~------------~~v~~~~~D~~~ 240 (384)
.|.++||.+|||+|||+|..+.+||+. +..|+|+|+|+.+++.++++++..+. .++.+..+|...
T Consensus 15 ~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 15 SLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred HcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 356789999999999999999999986 36899999999999999998865543 124566677776
Q ss_pred cccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 241 ~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
++... ...||.|++-. ++ .....++ ....+..+.+.| ||||.++..+.+...
T Consensus 92 l~~~~-~~~~D~i~~~~------~l-------~~l~~~~-------~~~~~~~i~~~L----kpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 92 LTARD-IGHCAAFYDRA------AM-------IALPADM-------RERYVQHLEALM----PQACSGLLITLEYDQ 143 (201)
T ss_dssp STHHH-HHSEEEEEEES------CG-------GGSCHHH-------HHHHHHHHHHHS----CSEEEEEEEEESSCS
T ss_pred ccccc-ccceeEEEEEe------ee-------Eecchhh-------hHHHHHHHHHhc----CCCcEEEEEEccccc
Confidence 64322 25799997621 11 1112221 234667777775 999998877766544
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.06 E-value=1.3e-09 Score=99.46 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=88.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 248 (384)
.+..++..+..+|||+|||+|..+..+++..++ ..++++|+ +..++.+++++...|+. ++.++.+|..+.. ..
T Consensus 72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~----~~ 145 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL----PR 145 (253)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SS
T ss_pred HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcce-eEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc----cc
Confidence 344556667789999999999999999998764 78999998 67899999999999874 6899999986532 15
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+||+|++-- + ...++.++. .++|+++.+.| ||||+|+.......
T Consensus 146 ~~D~v~~~~------v-------lh~~~d~~~-------~~~L~~~~~~L----kPGG~l~i~e~~~~ 189 (253)
T d1tw3a2 146 KADAIILSF------V-------LLNWPDHDA-------VRILTRCAEAL----EPGGRILIHERDDL 189 (253)
T ss_dssp CEEEEEEES------C-------GGGSCHHHH-------HHHHHHHHHTE----EEEEEEEEEECCBC
T ss_pred chhheeecc------c-------cccCCchhh-------HHHHHHHHHhc----CCCcEEEEEeccCC
Confidence 799998721 1 223343332 46889999986 99999998765443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.04 E-value=1.3e-10 Score=110.23 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=102.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccC----CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKN----TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~----~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~ 246 (384)
..++.++++.+|||.|||+|+..+.+...+.. ...++|+|+++..+..++.|+...+... .+.+.|......
T Consensus 110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~--- 185 (328)
T d2f8la1 110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM-TLLHQDGLANLL--- 185 (328)
T ss_dssp HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCTTSCCC---
T ss_pred HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh-hhhccccccccc---
Confidence 44557788999999999999998888776543 2379999999999999999998888754 444666554322
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCch--hhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE-EeccCCccccHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDES--VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STCSIMVTENEAV 323 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~--~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY-sTCSi~~~ENe~v 323 (384)
..+||+|+.|||++......+.+. ....... ...+.-++.+++++| +|||++++ ..+|+....+...
T Consensus 186 ~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~------~~~~~~Fi~~~~~~L----k~~G~~~~I~p~~~l~~~~~~~ 255 (328)
T d2f8la1 186 VDPVDVVISDLPVGYYPDDENAKTFELCREEGH------SFAHFLFIEQGMRYT----KPGGYLFFLVPDAMFGTSDFAK 255 (328)
T ss_dssp CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSC------EEHHHHHHHHHHHTE----EEEEEEEEEEEGGGGGSTTHHH
T ss_pred cccccccccCCCCCCCccchhhhhcchhcccCc------chHHHHHHHHHHHhc----CCCCceEEEecCccccCchhHH
Confidence 368999999999854432111110 0111111 123445788899986 99999865 5677777777777
Q ss_pred HH-HHHhcCCC
Q 016730 324 ID-YALKKRDV 333 (384)
Q Consensus 324 v~-~~l~~~~~ 333 (384)
+. +++++..+
T Consensus 256 lR~~L~~~~~i 266 (328)
T d2f8la1 256 VDKFIKKNGHI 266 (328)
T ss_dssp HHHHHHHHEEE
T ss_pred HHHHHHhCCcE
Confidence 76 55665543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.04 E-value=3.1e-10 Score=99.13 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCccc-ccCCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPK-VLGLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~~~-~~~~~~fD~Vl 254 (384)
.|.+|||+|||+|..++..+.+ +...|+.+|.+...++.+++|++.+++.+ ..+...|+..+.. .....+||.|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence 6789999999999999877765 45699999999999999999999999854 5666666544322 12235799999
Q ss_pred EcCCC
Q 016730 255 LDAPC 259 (384)
Q Consensus 255 lDaPC 259 (384)
+|||+
T Consensus 121 lDPPY 125 (183)
T d2ifta1 121 LDPPF 125 (183)
T ss_dssp ECCCS
T ss_pred echhH
Confidence 99996
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.4e-09 Score=99.61 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=95.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc--c--cccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL--P--KVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~--~--~~~~~~~fD~ 252 (384)
+.-+|||+|||+|..+..|+...++ ..++|+|++++.++.+++|++++++.+ +.+.+.+.... . .....++||.
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~-~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCC-ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4458999999999999999998875 799999999999999999999999876 66655543321 1 1112367999
Q ss_pred EEEcCCCCCCCcCCC----------CchhhccCCHHHH-HHH--HHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc
Q 016730 253 VLLDAPCSGTGVISK----------DESVKTSKSLEDI-QKC--SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 253 VllDaPCSg~G~~~r----------~p~~~~~~~~~~i-~~l--~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
|+++||.-.+.-... .|..........+ ... ...-++|+..+..++ +..|.+. |=+...+
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~----~~~g~~t---~~ig~~~ 212 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLK----KRLRWYS---CMLGKKC 212 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHG----GGBSCEE---EEESSTT
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHh----hcCcEEE---EEecchh
Confidence 999999854321110 1111111010000 000 124567888888876 7777653 3456667
Q ss_pred cHHHHHHHHhcCCC
Q 016730 320 NEAVIDYALKKRDV 333 (384)
Q Consensus 320 Ne~vv~~~l~~~~~ 333 (384)
+-.-|..+|++.++
T Consensus 213 ~l~~i~~~L~~~g~ 226 (250)
T d2h00a1 213 SLAPLKEELRIQGV 226 (250)
T ss_dssp SHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHcCC
Confidence 76667777777664
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=3.7e-10 Score=104.26 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=60.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.++.+|||+|||+|..+.++++..++ ..++++|+|+.+++.++++. .++.+..+|+..++. .++.||.|++
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~--~~~sfD~v~~ 153 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--SDTSMDAIIR 153 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--CTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhccc-----ccccceeeehhhccC--CCCCEEEEee
Confidence 567889999999999999999998754 78999999999999887652 467888999998863 4588999995
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=3.1e-10 Score=101.73 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++ +..+ ++.+|+.+++ +..++||+|++-
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~--~~~~~~~~l~--~~~~~fD~ii~~ 109 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN--VVEAKAEDLP--FPSGAFEAVLAL 109 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC--EEECCTTSCC--SCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc--cccccccccc--cccccccceeee
Confidence 46789999999999999988775 35899999999999998875 3333 4468888875 334889999862
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.. ++ .+..+ ..++|+.+.++| ||||.++.++-
T Consensus 110 ~~-----~~------~~~~d----------~~~~l~~i~r~L----k~gG~~ii~~~ 141 (246)
T d2avna1 110 GD-----VL------SYVEN----------KDKAFSEIRRVL----VPDGLLIATVD 141 (246)
T ss_dssp SS-----HH------HHCSC----------HHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred cc-----hh------hhhhh----------HHHHHHHHHhhc----CcCcEEEEEEC
Confidence 11 11 11111 234678888876 99999998763
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1.4e-09 Score=95.69 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=71.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+ ..++|+|+|+.+++.++++ ++.++++|+.+++. ..++||.|++-
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~--~~~~fD~I~~~ 98 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR-------GVFVLKGTAENLPL--KDESFDFALMV 98 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCS--CTTCEEEEEEE
T ss_pred CCCCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc-------cccccccccccccc--ccccccccccc
Confidence 35678999999999876544 2478999999999988763 57788999988763 34789999972
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.++..-| .+ .++|.++.+.| +|||.++..+...
T Consensus 99 ------~~l~h~~------d~----------~~~l~~~~~~L----~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 99 ------TTICFVD------DP----------ERALKEAYRIL----KKGGYLIVGIVDR 131 (208)
T ss_dssp ------SCGGGSS------CH----------HHHHHHHHHHE----EEEEEEEEEEECS
T ss_pred ------ccccccc------cc----------ccchhhhhhcC----CCCceEEEEecCC
Confidence 2322211 11 24678888886 9999999887644
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.3e-09 Score=98.76 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=87.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-------------------------
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN------------------------- 230 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~------------------------- 230 (384)
..+|.+|||+|||+|..+..++.. ....|+|+|+|+..++.++++++..+...
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 457889999999999987665543 22379999999999999999987654321
Q ss_pred ----E-EEEecCC--CCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC
Q 016730 231 ----T-IVCNYDG--NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (384)
Q Consensus 231 ----v-~~~~~D~--~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk 303 (384)
+ .....+. .........+.||+|++- .+ ...+..........++++.++| |
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~------~~------------l~~~~~~~~~~~~~l~~i~~~L----k 184 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL------LA------------MECACCSLDAYRAALCNLASLL----K 184 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE------SC------------HHHHCSSHHHHHHHHHHHHTTE----E
T ss_pred HhhhhhcccccccccccccccccCCcccEEeeh------hh------------HHHhcccHHHHHHHHHHHHhcc----C
Confidence 0 1111111 111122334789999862 11 1111101122355777888875 9
Q ss_pred CCcEEEEEeccCCcc------------ccHHHHHHHHhcCCCEEeec
Q 016730 304 SGGYIVYSTCSIMVT------------ENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 304 pGG~lvYsTCSi~~~------------ENe~vv~~~l~~~~~~l~~~ 338 (384)
|||+++.++..-... =+++.|..+++..|++++.+
T Consensus 185 pGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 185 PGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 999999887533210 13566777888999988765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.96 E-value=2.8e-09 Score=97.54 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=95.0
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.+.+.++.+|||+|||+|..|.+++.... ..|+++|.++.+++.+++++. +..++.+.+.|+.+++. ..+.||.
T Consensus 88 ~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~fD~ 161 (254)
T d1xtpa_ 88 SLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATL--PPNTYDL 161 (254)
T ss_dssp TSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCC--CSSCEEE
T ss_pred hCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccc--ccccceeEEcccccccc--CCCccce
Confidence 34456788999999999999998887643 479999999999999998765 34568888899887753 3478999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe-ccCCc-----cc------c
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMV-----TE------N 320 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT-CSi~~-----~E------N 320 (384)
|++--. + ...+..+ ..++|.++.+.| ||||+++.+. |.... .+ .
T Consensus 162 I~~~~v------l-------~hl~d~d-------~~~~l~~~~~~L----kpgG~iii~e~~~~~~~~~~d~~d~~~~rs 217 (254)
T d1xtpa_ 162 IVIQWT------A-------IYLTDAD-------FVKFFKHCQQAL----TPNGYIFFKENCSTGDRFLVDKEDSSLTRS 217 (254)
T ss_dssp EEEESC------G-------GGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEEBC--CCEEEETTTTEEEBC
T ss_pred EEeecc------c-------cccchhh-------hHHHHHHHHHhc----CCCcEEEEEecCCCCCcceecccCCceeCC
Confidence 998432 1 1122222 245678888876 9999998764 22211 01 2
Q ss_pred HHHHHHHHhcCCCEEeec
Q 016730 321 EAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 321 e~vv~~~l~~~~~~l~~~ 338 (384)
++....++++.+++++..
T Consensus 218 ~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 218 DIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 445666777778877654
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=3.1e-09 Score=98.30 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=66.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
+..+|+|+|||+|..++.++.. + ...|+|+|+|+..++.+++|++++|+.+ +.+...|....... ..++||.|++|
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~-~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE-KFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG-GTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc-ccCcccEEEEc
Confidence 3458999999999999888754 4 4789999999999999999999999976 56667777664322 23689999999
Q ss_pred CCCCCC
Q 016730 257 APCSGT 262 (384)
Q Consensus 257 aPCSg~ 262 (384)
||+=.+
T Consensus 187 PPYI~~ 192 (271)
T d1nv8a_ 187 PPYVKS 192 (271)
T ss_dssp CCCBCG
T ss_pred ccccCc
Confidence 998443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=7.9e-10 Score=99.36 Aligned_cols=120 Identities=12% Similarity=0.009 Sum_probs=85.6
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----------------CceEEE
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----------------VTNTIV 233 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----------------~~~v~~ 233 (384)
..++.+.+|.+|||+|||.|.-+.+||+. +..|+|+|+|+..++.++++....+ -.++.+
T Consensus 38 ~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 114 (229)
T d2bzga1 38 DTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL 114 (229)
T ss_dssp HHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence 34567788999999999999999999885 3589999999999999887764321 125778
Q ss_pred EecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.++|...++.. ....||.|+. |.....+ .+++ ....+....++| ||||++++.++
T Consensus 115 ~~~d~~~l~~~-~~~~fd~i~~---~~~l~~~----------~~~~-------r~~~~~~~~~~L----kpgG~~~l~~~ 169 (229)
T d2bzga1 115 YCCSIFDLPRT-NIGKFDMIWD---RGALVAI----------NPGD-------RKCYADTMFSLL----GKKFQYLLCVL 169 (229)
T ss_dssp EESCGGGGGGS-CCCCEEEEEE---SSSTTTS----------CGGG-------HHHHHHHHHHTE----EEEEEEEEEEE
T ss_pred EEcchhhcccc-ccCceeEEEE---EEEEEec----------cchh-------hHHHHHHHHhhc----CCcceEEEEEc
Confidence 88888776543 2368999975 2222211 1111 133566667775 99999999998
Q ss_pred cCCcc
Q 016730 314 SIMVT 318 (384)
Q Consensus 314 Si~~~ 318 (384)
+..+.
T Consensus 170 ~~~~~ 174 (229)
T d2bzga1 170 SYDPT 174 (229)
T ss_dssp ECCTT
T ss_pred ccCCC
Confidence 87543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=3.3e-09 Score=92.32 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=86.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc------ccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~------~~~~~~ 249 (384)
.++|.+|||+||||||++..+++.+.+.+.|+++|+.+- -.+.++.++.+|...... .....+
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcc
Confidence 368999999999999999999999888899999997652 135678888998876321 123468
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
||+|+.|...-.+|.- ..+-.....+-...|.-|.+. ||+||.+|.=. +.-+....+.+.++
T Consensus 89 ~DlVlSD~ap~~sg~~-----------~~d~~~~~~L~~~~l~~a~~~----Lk~gG~fV~K~---F~g~~~~~l~~~l~ 150 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTP-----------AVDIPRAMYLVELALEMCRDV----LAPGGSFVVKV---FQGEGFDEYLREIR 150 (180)
T ss_dssp EEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHH----EEEEEEEEEEE---ESSTTHHHHHHHHH
T ss_pred eeEEEecccchhcccc-----------hhHHHHHHHHHHHHHHhhhhc----cCCCCcEEEEE---ecCccHHHHHHHHH
Confidence 9999999775555531 112222223333344555555 59999998543 32333333444444
Q ss_pred c-C-CCEEeec
Q 016730 330 K-R-DVKLVPC 338 (384)
Q Consensus 330 ~-~-~~~l~~~ 338 (384)
+ + .+.+..+
T Consensus 151 ~~F~~V~~~KP 161 (180)
T d1ej0a_ 151 SLFTKVKVRKP 161 (180)
T ss_dssp HHEEEEEEECC
T ss_pred hhcCEEEEECC
Confidence 3 3 3455443
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=2.9e-09 Score=98.95 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=82.5
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce----EEEEecCCCCcccc-
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN----TIVCNYDGNELPKV- 244 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~----v~~~~~D~~~~~~~- 244 (384)
....|..+++.+|||+|||+|..+..|++. ...|+|+|+|+.+++.++++....+... ..+...|.......
T Consensus 48 l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T d1xvaa_ 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 124 (292)
T ss_dssp HHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence 345566677889999999999999999875 2489999999999999999998876541 23334444332211
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.....||.|++-- +++..-|+... ..+ .++.+|+++.+.| ||||+|+..+.
T Consensus 125 ~~~~~fd~v~~~~-----~~~~~~~~~~~--~~~-------~~~~~l~~~~~~L----kpgG~li~~~~ 175 (292)
T d1xvaa_ 125 PAGDGFDAVICLG-----NSFAHLPDSKG--DQS-------EHRLALKNIASMV----RPGGLLVIDHR 175 (292)
T ss_dssp CCTTCEEEEEECS-----SCGGGSCCTTS--SSH-------HHHHHHHHHHHTE----EEEEEEEEEEE
T ss_pred CCCCCceEEEEec-----CchhhcCCccc--ChH-------HHHHHHHHHHHHc----CcCcEEEEeec
Confidence 1236899999621 11211111110 111 2456889999986 99999998764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=9.4e-10 Score=98.79 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=89.3
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccc-c---c
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPK-V---L 245 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~-~---~ 245 (384)
..+.......+||++|++.|.-|+++|..++..|+|+++|.++...+.+++++++.|+.+ +.+..+|+.+... . .
T Consensus 52 ~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~ 131 (219)
T d2avda1 52 ANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG 131 (219)
T ss_dssp HHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT
T ss_pred HHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhc
Confidence 334433445699999999999999999999878999999999999999999999999976 8888899866421 1 1
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
....||.|++|+-= + .+...+..++++| +|||.|++-.-
T Consensus 132 ~~~~fD~ifiD~dk------------------~-------~y~~~~~~~~~lL----~~GGvii~Dn~ 170 (219)
T d2avda1 132 EAGTFDVAVVDADK------------------E-------NCSAYYERCLQLL----RPGGILAVLRV 170 (219)
T ss_dssp CTTCEEEEEECSCS------------------T-------THHHHHHHHHHHE----EEEEEEEEECC
T ss_pred ccCCccEEEEeCCH------------------H-------HHHHHHHHHHHHh----cCCcEEEEeCC
Confidence 23689999999750 0 1234566777775 99999998654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.83 E-value=1.7e-09 Score=97.59 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=89.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccccc----
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL---- 245 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~---- 245 (384)
..++......+||++|++.|.-|+++|+.++..|+|+++|.++++.+.+++++++.|+.+ +.++.+|+......+
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~ 131 (227)
T d1susa1 52 SMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDE 131 (227)
T ss_dssp HHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCG
T ss_pred HHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhcc
Confidence 333333345699999999999999999999888999999999999999999999999975 889999987542211
Q ss_pred -CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 -GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 -~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..++||.|++|+- | . .+...++.++++| +|||.||+-..
T Consensus 132 ~~~~~fD~iFiDa~-------------k-----~-------~y~~~~e~~~~ll----~~gGiii~DNv 171 (227)
T d1susa1 132 KNHGSYDFIFVDAD-------------K-----D-------NYLNYHKRLIDLV----KVGGVIGYDNT 171 (227)
T ss_dssp GGTTCBSEEEECSC-------------S-----T-------THHHHHHHHHHHB----CTTCCEEEETT
T ss_pred ccCCceeEEEeccc-------------h-----h-------hhHHHHHHHHhhc----CCCcEEEEccC
Confidence 1368999999974 0 0 1234566677775 99999998654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.83 E-value=3.3e-08 Score=90.32 Aligned_cols=110 Identities=20% Similarity=0.142 Sum_probs=84.4
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
++..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.++++++..|..+ +.++.+|..... ...||+
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~----p~~~D~ 150 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL----PVTADV 150 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SCCEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcC-cEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc----cccchh
Confidence 44556679999999999999999998764 78999997 788999999999998854 888888876521 146999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|++-- +...++.++ ..++|+++.+.| ||||+++...-
T Consensus 151 v~~~~-------------vLh~~~d~~-------~~~lL~~i~~~L----kpgG~llI~d~ 187 (256)
T d1qzza2 151 VLLSF-------------VLLNWSDED-------ALTILRGCVRAL----EPGGRLLVLDR 187 (256)
T ss_dssp EEEES-------------CGGGSCHHH-------HHHHHHHHHHHE----EEEEEEEEEEC
T ss_pred hhccc-------------cccccCcHH-------HHHHHHHHHhhc----CCcceeEEEEe
Confidence 98721 223444443 256789999986 99999987654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=2.6e-09 Score=95.53 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=68.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccc----cCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKV----LGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~----~~~~~fD~ 252 (384)
...+||++|+|.|.-|+++|+.++..|+|+++|++++.++.+++++++.|+.+ ++++.+|+.+.... .....||.
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 34589999999999999999988877999999999999999999999999965 99999998764221 23367999
Q ss_pred EEEcCC
Q 016730 253 VLLDAP 258 (384)
Q Consensus 253 VllDaP 258 (384)
|++|.-
T Consensus 136 ifiD~~ 141 (214)
T d2cl5a1 136 VFLDHW 141 (214)
T ss_dssp EEECSC
T ss_pred eeeccc
Confidence 999953
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=9.9e-09 Score=96.31 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=61.6
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
...+|.+|||+|||+|..++.+|+. +..+|+|+|.++.... ++++....|. .++.++++|..++... .++||+|
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~--~~~~D~I 106 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLP--VEKVDVI 106 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCS--CSCEEEE
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCc--cccceEE
Confidence 4457899999999999998887775 2358999999998654 5556666665 5689999999987643 3789999
Q ss_pred EEcCC
Q 016730 254 LLDAP 258 (384)
Q Consensus 254 llDaP 258 (384)
+++..
T Consensus 107 vse~~ 111 (311)
T d2fyta1 107 ISEWM 111 (311)
T ss_dssp EECCC
T ss_pred EEeee
Confidence 98754
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=9.5e-09 Score=97.47 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=65.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-------CC--ceEEEEecCCCCc
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-------GV--TNTIVCNYDGNEL 241 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-------g~--~~v~~~~~D~~~~ 241 (384)
...++++++++|||+|||.|..+.++|...+. ..++|+|+++.+++.++++++.+ |+ .++.++++|+.+.
T Consensus 144 ~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~-~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~ 222 (328)
T d1nw3a_ 144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 222 (328)
T ss_dssp HHHSCCCTTCEEEEETCTTSHHHHHHHHHCCC-SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred HHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence 45567899999999999999999999887653 68999999999999988776653 33 4699999999876
Q ss_pred ccccCCCCCCEEEEc
Q 016730 242 PKVLGLNTVDRVLLD 256 (384)
Q Consensus 242 ~~~~~~~~fD~VllD 256 (384)
+........|+|++.
T Consensus 223 ~~~~~~~~advi~~~ 237 (328)
T d1nw3a_ 223 EWRERIANTSVIFVN 237 (328)
T ss_dssp HHHHHHHHCSEEEEC
T ss_pred ccccccCcceEEEEc
Confidence 522100135788864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2e-08 Score=92.05 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=86.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--------------------------- 228 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~--------------------------- 228 (384)
...|.+|||+|||||..+...+.. ....|+|+|.|+.+++.++++++.-+.
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 446899999999999776544433 224799999999999999987653221
Q ss_pred ---ceEEEEecCCCCccc----ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhcc
Q 016730 229 ---TNTIVCNYDGNELPK----VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (384)
Q Consensus 229 ---~~v~~~~~D~~~~~~----~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~ 301 (384)
....+...|...-.. ....+.||+|++=- ..+.+..-.....+.|+++.++|
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~------------------~l~~i~~~~~~~~~~l~~~~~~L--- 188 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF------------------CLEAVSPDLASFQRALDHITTLL--- 188 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES------------------CHHHHCSSHHHHHHHHHHHHTTE---
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHH------------------HHHHHccCHHHHHHHHHHHHHHc---
Confidence 012234455543211 12235799998711 11111000112356778888886
Q ss_pred CCCCcEEEEEeccCC------------ccccHHHHHHHHhcCCCEEeec
Q 016730 302 SKSGGYIVYSTCSIM------------VTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 302 lkpGG~lvYsTCSi~------------~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
||||+|+.++---. ..=+++.|..+++..|++++..
T Consensus 189 -kPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 189 -RPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp -EEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred -CCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 99999998653111 1126677888888889888764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.73 E-value=2.2e-09 Score=95.99 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++. ...|+|+|+|+..++.++++.. .++.++++|+..++. .++||.|++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~---~~~fD~I~~- 87 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQL---PRRYDNIVL- 87 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCC---SSCEEEEEE-
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc----ccccccccccccccc---ccccccccc-
Confidence 35678999999999998877654 2479999999999999986642 468888888876643 378999996
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH-HchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI-DMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~-~~L~~~lkpGG~lvYsT 312 (384)
.+++. +...+ .++|..+. ++ |||||.++.++
T Consensus 88 -----~~vle------h~~d~----------~~~l~~i~~~~----Lk~gG~l~i~~ 119 (225)
T d2p7ia1 88 -----THVLE------HIDDP----------VALLKRINDDW----LAEGGRLFLVC 119 (225)
T ss_dssp -----ESCGG------GCSSH----------HHHHHHHHHTT----EEEEEEEEEEE
T ss_pred -----cceeE------ecCCH----------HHHHHHHHHHh----cCCCceEEEEe
Confidence 23432 22222 34566666 44 49999999876
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.72 E-value=7.9e-09 Score=101.36 Aligned_cols=163 Identities=19% Similarity=0.136 Sum_probs=109.1
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCC------------ceEEEEeCCHHHHHHHHHHHHH
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT------------GLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~------------g~V~a~D~~~~rl~~l~~n~~r 225 (384)
|.|+--..-+.+.+.++.|+++++|+|.|||+|+..+.+.+.+... ..++++|+++.....++-|+-.
T Consensus 142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l 221 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 221 (425)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence 4333333344567888899999999999999999988887776432 2499999999999999999988
Q ss_pred cCCc--eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchh-hccCCHHHHHHHHHHHHHHHHHHHHchhccC
Q 016730 226 MGVT--NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESV-KTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (384)
Q Consensus 226 ~g~~--~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~-~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l 302 (384)
.|+. +..+.+.|...... ..+||+|+.+||.+....-.....- .+..... ..+.-++.+++++|
T Consensus 222 ~g~~~~~~~i~~~d~l~~~~---~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~------~~~~~Fi~~~~~~L---- 288 (425)
T d2okca1 222 HGIGTDRSPIVCEDSLEKEP---STLVDVILANPPFGTRPAGSVDINRPDFYVETK------NNQLNFLQHMMLML---- 288 (425)
T ss_dssp TTCCSSCCSEEECCTTTSCC---SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS------CHHHHHHHHHHHHE----
T ss_pred cCCccccceeecCchhhhhc---ccccceEEecCCCCCCccccchhhhhhcccccc------cHHHHHHHHHHHhc----
Confidence 8764 34456677665332 3689999999998654332211100 0000111 12344788888886
Q ss_pred CCCcEEEEEec--cCCccccHHHHH-HHHhcCCC
Q 016730 303 KSGGYIVYSTC--SIMVTENEAVID-YALKKRDV 333 (384)
Q Consensus 303 kpGG~lvYsTC--Si~~~ENe~vv~-~~l~~~~~ 333 (384)
++||++++.+- +++....+.-+. +++++..+
T Consensus 289 k~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~~i 322 (425)
T d2okca1 289 KTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNL 322 (425)
T ss_dssp EEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEE
T ss_pred CCCCeEEEEechHHhhhhhhHHHHHHHHHHhcch
Confidence 99999887765 344444444454 77776554
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=1.2e-08 Score=96.13 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=62.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..+|.+|||+|||+|..+..+|+. +..+|+|+|.++. ...+++++++.|+.+ +.++++|+.+++.. .++||.|+
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~--~~~~D~iv 105 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVDIII 105 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCS--SSCEEEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccc--cceeEEEe
Confidence 347899999999999988877764 2358999999975 577788889988865 88999999887633 37899999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
++..
T Consensus 106 s~~~ 109 (316)
T d1oria_ 106 SEWM 109 (316)
T ss_dssp ECCC
T ss_pred eeee
Confidence 8754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.71 E-value=3.1e-09 Score=102.61 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=86.0
Q ss_pred EeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-----------
Q 016730 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN----------- 230 (384)
Q Consensus 162 ~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~----------- 230 (384)
.|....-+.+.++..-.+.+|||+.||+|..++..+.-.+ ...|+++|+|+..++.+++|++.+|+.+
T Consensus 29 ~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~ 107 (375)
T d2dula1 29 RMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK 107 (375)
T ss_dssp GGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred HHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence 4544444444444333577999999999999998776554 3589999999999999999999998753
Q ss_pred ----EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 231 ----TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 231 ----v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
+.+.+.|+..+... ....||+|-+||. |+. ...|+.|++.+ +.||
T Consensus 108 ~~~~~~~~~~Da~~~~~~-~~~~fDvIDiDPf--Gs~------------------------~pfldsAi~a~----~~~G 156 (375)
T d2dula1 108 GEKTIVINHDDANRLMAE-RHRYFHFIDLDPF--GSP------------------------MEFLDTALRSA----KRRG 156 (375)
T ss_dssp SSSEEEEEESCHHHHHHH-STTCEEEEEECCS--SCC------------------------HHHHHHHHHHE----EEEE
T ss_pred ccceeEeehhhhhhhhHh-hcCcCCcccCCCC--CCc------------------------HHHHHHHHHHh----ccCC
Confidence 45556666544322 2367999999984 322 23789999986 7776
Q ss_pred EEEEEecc
Q 016730 307 YIVYSTCS 314 (384)
Q Consensus 307 ~lvYsTCS 314 (384)
.| +.|||
T Consensus 157 ll-~vTaT 163 (375)
T d2dula1 157 IL-GVTAT 163 (375)
T ss_dssp EE-EEEEC
T ss_pred EE-EEEec
Confidence 65 55554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=2.6e-08 Score=94.12 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=63.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..+|.+|||+|||+|..+..+++. +..+|+|+|.++ .+..++++.+..|.. ++.++++|..+++. +.++||.|+
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~--~~~~~D~i~ 110 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--PFPKVDIII 110 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--SSSCEEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC--cccceeEEE
Confidence 457999999999999998877765 235899999996 678899999998875 58888999988753 247899999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
++..
T Consensus 111 se~~ 114 (328)
T d1g6q1_ 111 SEWM 114 (328)
T ss_dssp ECCC
T ss_pred EEec
Confidence 8653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=6e-08 Score=94.23 Aligned_cols=112 Identities=12% Similarity=0.064 Sum_probs=75.6
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------ceEEE-EecCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------TNTIV-CNYDGNE 240 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------~~v~~-~~~D~~~ 240 (384)
...+++++|++|||+|||.|..+.++|...+. +.|+|+|+++.+++.++++++..+. ..+.+ ...|...
T Consensus 209 l~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 209 YQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp HHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred HHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence 45567899999999999999999999988763 5899999999999999999876532 12222 2344433
Q ss_pred cccc-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 241 ~~~~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
.+.. .....+|+|+++-=| ..+ + -...|....+. |||||+||.
T Consensus 288 ~~~~d~~~~~adVV~inn~~---------------f~~-~-------l~~~L~ei~r~----LKPGGrIVs 331 (406)
T d1u2za_ 288 NNRVAELIPQCDVILVNNFL---------------FDE-D-------LNKKVEKILQT----AKVGCKIIS 331 (406)
T ss_dssp CHHHHHHGGGCSEEEECCTT---------------CCH-H-------HHHHHHHHHTT----CCTTCEEEE
T ss_pred ccccccccccceEEEEeccc---------------Cch-H-------HHHHHHHHHHh----cCCCcEEEE
Confidence 2111 011467889885211 111 1 12345666666 499999975
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=3.9e-08 Score=98.85 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=106.5
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCC-----------------ceEEEEeCCHHHHHHH
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----------------GLIYANEMKASRLKSL 219 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~-----------------g~V~a~D~~~~rl~~l 219 (384)
.|.|+--..-+.+.+.++.|+++.+|+|.|||+|+..+.+...+... ..+++.|+++.....+
T Consensus 143 ~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 143 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred cchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 45555444445677888999999999999999999988777655321 2589999999999999
Q ss_pred HHHHHHcCCce-----EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHH
Q 016730 220 TANLHRMGVTN-----TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA 294 (384)
Q Consensus 220 ~~n~~r~g~~~-----v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a 294 (384)
+-|+--.|... ..+...+..... .....+||+|+.+||.+...-..+........+. .+.-++.++
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~--------~~~~Fi~~~ 293 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSN--------KQLCFMQHI 293 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSC--------HHHHHHHHH
T ss_pred HHHHHhhcccccccccchhhhhhhhhhc-ccccccceeEEecCCccccccccchhhhcccccc--------ccHHHHHHH
Confidence 99987766532 112223332211 1223689999999999765433322111111111 233478889
Q ss_pred HHchhccCCCCcEEEEEec-cCC-ccccHHHHH-HHHhcCCCE
Q 016730 295 IDMVDANSKSGGYIVYSTC-SIM-VTENEAVID-YALKKRDVK 334 (384)
Q Consensus 295 ~~~L~~~lkpGG~lvYsTC-Si~-~~ENe~vv~-~~l~~~~~~ 334 (384)
++.| ++||++++.+- |++ ..-.+..+. +++++..++
T Consensus 294 l~~L----k~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~ 332 (524)
T d2ar0a1 294 IETL----HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLH 332 (524)
T ss_dssp HHHE----EEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEEEE
T ss_pred HHhc----cccCcEEEEEehHHhhhhhhhHHHHHHHHHcCCce
Confidence 9886 99999998875 543 444455555 777765443
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=8e-08 Score=88.20 Aligned_cols=114 Identities=9% Similarity=0.072 Sum_probs=75.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHcc----C-CceEEEEeCCHHHHHHHHHHHHHcC-CceEEE--EecCCCCc----c
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMK----N-TGLIYANEMKASRLKSLTANLHRMG-VTNTIV--CNYDGNEL----P 242 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~----~-~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~--~~~D~~~~----~ 242 (384)
..+++.+|||+|||+|..+..|+..+. + ...++|+|+|+.+++.++++++... +.++.+ ...++..+ .
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 345566899999999999988877542 1 2468999999999999999986643 344443 33332211 1
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.....++||+|++- .++ .+...+ .+.|.++.++| ||||.|+..+.+
T Consensus 117 ~~~~~~~fD~I~~~------~~l------~~~~d~----------~~~l~~l~~~L----kpgG~l~i~~~~ 162 (280)
T d1jqea_ 117 EKKELQKWDFIHMI------QML------YYVKDI----------PATLKFFHSLL----GTNAKMLIIVVS 162 (280)
T ss_dssp TSSSCCCEEEEEEE------SCG------GGCSCH----------HHHHHHHHHTE----EEEEEEEEEEEC
T ss_pred ccCCCCceeEEEEc------cce------ecCCCH----------HHHHHHHHhhC----CCCCEEEEEEec
Confidence 11234789999972 122 122222 24678888886 999999887654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.36 E-value=3.7e-07 Score=82.81 Aligned_cols=89 Identities=15% Similarity=0.016 Sum_probs=71.4
Q ss_pred CcchhhhcCCCCC--ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------ceEEEEe
Q 016730 167 SFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------TNTIVCN 235 (384)
Q Consensus 167 s~l~~~~L~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------~~v~~~~ 235 (384)
....+.++..+++ .+|||++||.|.-+..+|.+- +.|+++|.++.....++++++++.. .++++++
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 3455666666655 489999999999999999872 6899999999999999999988742 3789999
Q ss_pred cCCCCcccccCCCCCCEEEEcCCC
Q 016730 236 YDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+|+.++.... ...||+|.+||+.
T Consensus 152 ~Ds~~~L~~~-~~~~DvIYlDPMF 174 (250)
T d2oyra1 152 ASSLTALTDI-TPRPQVVYLDPMF 174 (250)
T ss_dssp SCHHHHSTTC-SSCCSEEEECCCC
T ss_pred CcHHHHHhcc-CCCCCEEEECCCC
Confidence 9987764433 2679999999984
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=4.1e-06 Score=73.76 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=80.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|+|+|+|.|-=++-+|-..++ ..++.+|.+.+++.-+++-..++|++|+.+++..+.++.. ..+||+|.+=|
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~-~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~---~~~fD~V~sRA 140 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---EPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---CSCEEEEECSC
T ss_pred cCCceeeeeccCCceeeehhhhccc-ceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc---ccccceehhhh
Confidence 3568999999999999988877654 8999999999999999999999999999999998887643 25799997522
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
= + +. ..++.-+..++ ++||+++.-.
T Consensus 141 ~----~------------~~----------~~ll~~~~~~l----~~~g~~~~~K 165 (207)
T d1jsxa_ 141 F----A------------SL----------NDMVSWCHHLP----GEQGRFYALK 165 (207)
T ss_dssp S----S------------SH----------HHHHHHHTTSE----EEEEEEEEEE
T ss_pred h----c------------CH----------HHHHHHHHHhc----CCCcEEEEEC
Confidence 1 1 11 23556666665 9999988765
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.15 E-value=3.6e-06 Score=75.64 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=67.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.+..++++++++||++|+|+|..|..|++.. ..|+|+|+|+..++.++++.. +..|+.++++|+..++.. ...
T Consensus 13 iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~~~--~~~ 85 (235)
T d1qama_ 13 IMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKFP--KNQ 85 (235)
T ss_dssp HHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCCC--SSC
T ss_pred HHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhcccc--ccc
Confidence 4566778899999999999999999999863 579999999999999888653 456899999999886522 234
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
...|+.+-|+
T Consensus 86 ~~~vv~NLPY 95 (235)
T d1qama_ 86 SYKIFGNIPY 95 (235)
T ss_dssp CCEEEEECCG
T ss_pred cceeeeeehh
Confidence 5678899995
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.06 E-value=1.4e-05 Score=71.70 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=93.1
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTV 250 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~~f 250 (384)
..+...++.+|+|+|+|.|-=++-+|-.+++ ..|+.+|.+.+++.-++.-.+.+|++|+.+++..+..+.... ..+.|
T Consensus 64 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~-~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~ 142 (239)
T d1xdza_ 64 FYVDFNQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESY 142 (239)
T ss_dssp GTSCGGGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCE
T ss_pred hhhcccCCCeEEeecCCCchHHHHHHHhCCC-ccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccc
Confidence 3343345678999999999999988887765 789999999999999999999999999999887766543211 12689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~ 330 (384)
|.|++=|= .+. ..++.-+..++ ++||++++--=. ..+|..+..+..+..
T Consensus 143 D~v~sRAv----------------a~l----------~~ll~~~~~~l----~~~g~~i~~KG~-~~~~El~~a~~~~~~ 191 (239)
T d1xdza_ 143 DIVTARAV----------------ARL----------SVLSELCLPLV----KKNGLFVALKAA-SAEEELNAGKKAITT 191 (239)
T ss_dssp EEEEEECC----------------SCH----------HHHHHHHGGGE----EEEEEEEEEECC--CHHHHHHHHHHHHH
T ss_pred eEEEEhhh----------------hCH----------HHHHHHHhhhc----ccCCEEEEECCC-ChHHHHHHHHHHHHH
Confidence 99987331 111 23566677775 999998865433 222222333445555
Q ss_pred CCCEEee
Q 016730 331 RDVKLVP 337 (384)
Q Consensus 331 ~~~~l~~ 337 (384)
.++++..
T Consensus 192 ~~~~~~~ 198 (239)
T d1xdza_ 192 LGGELEN 198 (239)
T ss_dssp TTEEEEE
T ss_pred cCCEEEE
Confidence 6655543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=3.9e-06 Score=77.85 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=80.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~ 246 (384)
+.++.+.| .+||=+|.|.|+.+..++..- +..+|+++|+|+..++.+++.+.... -.++.++..|+..+-...
T Consensus 83 pl~~~~~p-k~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~- 159 (295)
T d1inla_ 83 PMFLHPNP-KKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF- 159 (295)
T ss_dssp HHHHSSSC-CEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-
T ss_pred hHhhCCCC-ceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-
Confidence 34444544 699999999998777666543 23589999999999999988765432 245889999998875543
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.++||+|++|++....|.. ... ..+++++.+.+.| +|||.+|.-+-|
T Consensus 160 ~~~yDvIi~D~~dp~~~~~------~~L-----------~t~efy~~~~~~L----~~~Gi~v~q~~s 206 (295)
T d1inla_ 160 KNEFDVIIIDSTDPTAGQG------GHL-----------FTEEFYQACYDAL----KEDGVFSAETED 206 (295)
T ss_dssp SSCEEEEEEEC----------------C-----------CSHHHHHHHHHHE----EEEEEEEEECCC
T ss_pred CCCCCEEEEcCCCCCcCch------hhh-----------ccHHHHHHHHhhc----CCCcEEEEecCC
Confidence 3689999999874322210 001 1345667777775 999999875544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.98 E-value=5e-06 Score=77.75 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=78.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcccccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
...+||.+|.|.|+.+..++..- +..+|+++|+++..++.+++.+...+ -.++.++.+|+..+-... ..+||+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-~~~yDv 154 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-EERYDV 154 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-CCCEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-CCcccE
Confidence 34689999999999777666543 34689999999999999998875532 135889999999875433 368999
Q ss_pred EEEcCCC--CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 253 VLLDAPC--SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 253 VllDaPC--Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|++|++= ...+ |. ....+ ++.++.+.+.| +|||.++.-+
T Consensus 155 Ii~D~~dp~~~~~-----~~-~~L~t-----------~eF~~~~~~~L----~p~Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDLTDPVGEDN-----PA-RLLYT-----------VEFYRLVKAHL----NPGGVMGMQT 195 (312)
T ss_dssp EEEECCCCBSTTC-----GG-GGGSS-----------HHHHHHHHHTE----EEEEEEEEEE
T ss_pred EEEeCCCcccccc-----hh-hhhhh-----------HHHHHHHHHhc----CCCceEEEec
Confidence 9999851 1111 11 11112 34566666665 9999998654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1.6e-05 Score=72.90 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=69.6
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~ 248 (384)
.+..+++.+++.||++|+|+|..|..|++.. ..|+|+|+|+..+..+++.+..... .++.++++|+..... .
T Consensus 13 Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~----~ 85 (278)
T d1zq9a1 13 IIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL----P 85 (278)
T ss_dssp HHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC----C
T ss_pred HHHHhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh----h
Confidence 3556678899999999999999999999873 5899999999999999998866543 579999999987642 4
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.++.|+-+.|+
T Consensus 86 ~~~~vV~NLPY 96 (278)
T d1zq9a1 86 FFDTCVANLPY 96 (278)
T ss_dssp CCSEEEEECCG
T ss_pred hhhhhhcchHH
Confidence 57899999995
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.82 E-value=1.4e-06 Score=78.88 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=68.7
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
-.+..+++.++++||++|+|+|..|..|++.. ..|+|+|+|+..++.+++++. +..|+.++++|+..++. ...
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~--~~~ 92 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQF--PNK 92 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTC--CCS
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhh--hccchhhhhhhhhcccc--ccc
Confidence 35667788999999999999999999998873 589999999998888776543 34689999999998753 335
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.++.|+.+-|+
T Consensus 93 ~~~~vv~NLPY 103 (245)
T d1yuba_ 93 QRYKIVGNIPY 103 (245)
T ss_dssp SEEEEEEECCS
T ss_pred eeeeEeeeeeh
Confidence 67889999995
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.74 E-value=9.9e-06 Score=74.34 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=83.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc----------CCceEEEEecCCCCcccccC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----------GVTNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~----------g~~~v~~~~~D~~~~~~~~~ 246 (384)
.+..+||-+|.|.|+.+..++.. +..+|+++|+|+..++.+++.+... .-.++.++.+|+..+...
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-- 146 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-- 146 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc--
Confidence 34569999999999977766543 3358999999999999998755321 124588999999876543
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc--CCccccHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMVTENEAVI 324 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS--i~~~ENe~vv 324 (384)
.++||+|++|++.. .|.. .... ..+.++.+.+.| +|||.+|.-+-| ..++....+.
T Consensus 147 ~~~yDvIi~D~~~~-~~~~------~~L~-----------t~eF~~~~~~~L----~~~Gv~v~q~~s~~~~~~~~~~~~ 204 (276)
T d1mjfa_ 147 NRGFDVIIADSTDP-VGPA------KVLF-----------SEEFYRYVYDAL----NNPGIYVTQAGSVYLFTDELISAY 204 (276)
T ss_dssp CCCEEEEEEECCCC-C-----------TT-----------SHHHHHHHHHHE----EEEEEEEEEEEETTTSHHHHHHHH
T ss_pred cCCCCEEEEeCCCC-CCCc------cccc-----------CHHHHHhhHhhc----CCCceEEEecCCcchhHHHHHHHH
Confidence 37899999999842 2210 0111 234566666665 999998754322 2333444444
Q ss_pred HHHHhcC
Q 016730 325 DYALKKR 331 (384)
Q Consensus 325 ~~~l~~~ 331 (384)
+.+-+..
T Consensus 205 ~tl~~~F 211 (276)
T d1mjfa_ 205 KEMKKVF 211 (276)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 4443433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=5e-05 Score=69.41 Aligned_cols=111 Identities=18% Similarity=0.127 Sum_probs=78.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CC---ceEEEEecCCCCcccccCCCCCCEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GV---TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~---~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
...+||-+|.|.|+.+..++..- +..+|+.+|+|+.-++.+++.+... +. .++.++..|+..+-... .++||+|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-~~~yDvI 152 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-ENQYDVI 152 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-CSCEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-CCCCCEE
Confidence 45699999999999877666543 3468999999999999999876432 22 46888899998865433 3689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
++|++... |. | .. ..+ ++..+.+.+.| +|||.+|.-+
T Consensus 153 i~D~~~p~-~~----~-~~-L~t-----------~eFy~~~~~~L----~~~Gv~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEPV-GP----A-VN-LFT-----------KGFYAGIAKAL----KEDGIFVAQT 189 (274)
T ss_dssp EESCSSCC-SC----C-CC-CST-----------THHHHHHHHHE----EEEEEEEEEC
T ss_pred EEcCCCCC-Cc----c-hh-hcc-----------HHHHHHHHhhc----CCCceEEEec
Confidence 99998532 21 1 11 112 34556666665 9999998653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=4.1e-05 Score=70.42 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc----CCceEEEEecCCCCcccccCCCCCCEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM----GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~----g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
...+||-+|.|.|+.+..+...- +..+|+.+|+++..++.+++.+..+ .-.++.++..|++.+-... .++||+|
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-~~~yDvI 155 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-QDAFDVI 155 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-SSCEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-CCCCCEE
Confidence 34689999999999877766543 3468999999999999999876542 1246889999998775432 3689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
++|++= ..|. + ..-..++.++.+.+.| +|||.++.-+-|.
T Consensus 156 i~D~~~-p~~~------------~-----~~L~t~eF~~~~~~~L----~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 156 ITDSSD-PMGP------------A-----ESLFKESYYQLMKTAL----KEDGVLCCQGECQ 195 (285)
T ss_dssp EEECC-----------------------------CHHHHHHHHHE----EEEEEEEEEEECT
T ss_pred EEcCCC-CCCc------------c-----cccccHHHHHHHHHhc----CCCCeEEEeccch
Confidence 999862 1111 0 0113455677777775 9999998765443
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=2.2e-05 Score=72.50 Aligned_cols=126 Identities=14% Similarity=0.166 Sum_probs=85.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
-.+||=+|.|.|+....++..- +..+|+++|+|+..++.+++.+.... -.++.++.+|+..+-.....++||+|+
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 3689999999999776665543 23589999999999999998764322 245888899998765433346899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
+|++-. .|. | . .. ..++.++.+.+.| +|||.+|.-+-|.. .+.+.+..+++
T Consensus 160 ~D~~dp-~~~----~-~-~L-----------~t~eF~~~~~~~L----~~~Gi~v~q~~s~~--~~~~~~~~i~~ 210 (290)
T d1xj5a_ 160 VDSSDP-IGP----A-K-EL-----------FEKPFFQSVARAL----RPGGVVCTQAESLW--LHMDIIEDIVS 210 (290)
T ss_dssp ECCCCT-TSG----G-G-GG-----------GSHHHHHHHHHHE----EEEEEEEEECCCTT--TCHHHHHHHHH
T ss_pred EcCCCC-CCc----c-h-hh-----------CCHHHHHHHHHhc----CCCcEEEEecCCcH--HHHHHHHHHHh
Confidence 998742 221 1 1 11 2244566666665 99999998765543 34444444433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.68 E-value=3e-05 Score=72.15 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=77.4
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~~ 247 (384)
.++.+. ..+||-+|.|.|+.+..++..- +..+|+.+|+|+..++.+++.+..+. -.++.++..|+..+-.. ..
T Consensus 101 l~~~~~-pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~ 177 (312)
T d2b2ca1 101 MFAHPD-PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HK 177 (312)
T ss_dssp HHHSSS-CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CT
T ss_pred HhcCCC-CCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CC
Confidence 334444 4689999999999777665532 23589999999999999998764432 24588999999887543 34
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
++||+|++|++-. .|. | . .-..++.++.+.+.| +|||.+|.-+
T Consensus 178 ~~yDvII~D~~dp-~~~----~--~-----------~L~t~eFy~~~~~~L----~~~Gi~v~q~ 220 (312)
T d2b2ca1 178 NEFDVIITDSSDP-VGP----A--E-----------SLFGQSYYELLRDAL----KEDGILSSQG 220 (312)
T ss_dssp TCEEEEEECCC-------------------------------HHHHHHHHE----EEEEEEEEEC
T ss_pred CCCCEEEEcCCCC-CCc----c--h-----------hhhhHHHHHHHHhhc----CCCcEEEEec
Confidence 7899999998731 111 0 0 112345666666665 9999998654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.65 E-value=3.3e-05 Score=69.20 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=71.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~~fD~Vl 254 (384)
.+++.+|+|+||||||.|-.++++.+ ...|.|+++--.-. ........++..-+.+... |... .....+|.|+
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~-e~P~~~~~~~~ni~~~~~~~dv~~----l~~~~~D~vl 137 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGH-EEPIPMSTYGWNLVRLQSGVDVFF----IPPERCDTLL 137 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTS-CCCCCCCSTTGGGEEEECSCCTTT----SCCCCCSEEE
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccc-cCCccccccccccccchhhhhHHh----cCCCcCCEEE
Confidence 46788999999999999998887643 24677777621100 0000001112122333222 2222 2347899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe-ccCCccccHHHHHHHHhcCCC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT-CSi~~~ENe~vv~~~l~~~~~ 333 (384)
||.--| +|. |++ +... -.++|+-|.+.| +|||.+|.=. |-.. .|-.+.++.+-.+++-
T Consensus 138 cDm~es-s~~----~~v------d~~R-----tl~vLela~~wL----k~gg~FvvKVl~py~-~~v~e~le~lq~~fgg 196 (257)
T d2p41a1 138 CDIGES-SPN----PTV------EAGR-----TLRVLNLVENWL----SNNTQFCVKVLNPYM-SSVIEKMEALQRKHGG 196 (257)
T ss_dssp ECCCCC-CSS----HHH------HHHH-----HHHHHHHHHHHC----CTTCEEEEEESCCCS-HHHHHHHHHHHHHHCC
T ss_pred eeCCCC-CCC----chh------hhhh-----HHHHHHHHHHHc----ccCCEEEEEECCCCC-hHHHHHHHHHHHHhCC
Confidence 996433 332 222 1111 124577777775 9999876422 3222 2333344455555554
Q ss_pred EEeec
Q 016730 334 KLVPC 338 (384)
Q Consensus 334 ~l~~~ 338 (384)
.++..
T Consensus 197 ~lVR~ 201 (257)
T d2p41a1 197 ALVRN 201 (257)
T ss_dssp EEECC
T ss_pred eeEcC
Confidence 55543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.58 E-value=0.00032 Score=62.70 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=72.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
....+|||+|+|+|..+..+++..++ .+++..|+. ..+ +..+ ..++.++.+|..+.. ...|+|++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~~~~~-----p~~D~~~l 145 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLP-QVI-------ENAPPLSGIEHVGGDMFASV-----PQGDAMIL 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECH-HHH-------TTCCCCTTEEEEECCTTTCC-----CCEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecch-hhh-------hccCCCCCeEEecCCccccc-----ccceEEEE
Confidence 44578999999999999999999865 688999973 222 2222 356888889986432 24599987
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
..+...|+.++. .+||+++.+.| +|||+|+.....+
T Consensus 146 -------------~~vLh~~~de~~-------~~iL~~~~~aL----~pgg~llI~e~v~ 181 (244)
T d1fp1d2 146 -------------KAVCHNWSDEKC-------IEFLSNCHKAL----SPNGKVIIVEFIL 181 (244)
T ss_dssp -------------ESSGGGSCHHHH-------HHHHHHHHHHE----EEEEEEEEEEEEE
T ss_pred -------------ehhhhhCCHHHH-------HHHHHHHHHHc----CCCcEEEEEEEEe
Confidence 223445666554 56889999986 9999998876543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.38 E-value=0.00078 Score=57.79 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCceEEEeccCCChHH----HHHHHHccC---CceEEEEeCCHHHHHHHHHHH--------------HHc----CC----
Q 016730 178 EKERVIDMAAAPGGKT----TYIAALMKN---TGLIYANEMKASRLKSLTANL--------------HRM----GV---- 228 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt----~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~--------------~r~----g~---- 228 (384)
+.-+||++|||+|-=+ +.+.+.... .-+|+|.|+|+..++.++... .+. +-
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 4458999999999843 333443322 237999999999999887322 111 00
Q ss_pred ---------ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchh
Q 016730 229 ---------TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299 (384)
Q Consensus 229 ---------~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~ 299 (384)
..+.+...+...... ...+.||+|+| |+ +....++ ..|+++++...+.|
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~fDvI~C-----------RN--VLiYf~~-------~~~~~vl~~l~~~L- 161 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQY-NVPGPFDAIFC-----------RN--VMIYFDK-------TTQEDILRRFVPLL- 161 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSC-CCCCCEEEEEE-----------CS--SGGGSCH-------HHHHHHHHHHGGGE-
T ss_pred eeehHHHHHHHHHHhhhhcccccc-CCCCCccEEEe-----------eh--hHHhcCH-------HHHHHHHHHHHHHh-
Confidence 012232233222111 12368999998 22 1112222 35778899988886
Q ss_pred ccCCCCcEEEEE
Q 016730 300 ANSKSGGYIVYS 311 (384)
Q Consensus 300 ~~lkpGG~lvYs 311 (384)
+|||.|+..
T Consensus 162 ---~pGG~L~lG 170 (193)
T d1af7a2 162 ---KPDGLLFAG 170 (193)
T ss_dssp ---EEEEEEEEC
T ss_pred ---CCCcEEEEe
Confidence 999998764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.36 E-value=0.00076 Score=56.07 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=66.2
Q ss_pred hhcCCCCCceEEEeccCCChH-HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc------c
Q 016730 172 MALAPQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------V 244 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgk-t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~------~ 244 (384)
...++++|++||=.|+|+-|. +..++..+ + .+|+++|.+++|++.+++ +|................ .
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G-a~vi~v~~~~~r~~~a~~----~ga~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-G-AFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRS 93 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhh-c-ccccccchHHHHHHHHHH----cCCcEEEeccccccccchhhhhhhc
Confidence 345688999999998876444 33455444 3 589999999999887754 677644332221111110 1
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..+..+|+|+- |+|.. ..+..+++++ ++||++++..+
T Consensus 94 ~~g~g~D~vid---~~g~~-------------------------~~~~~a~~~~----~~~G~iv~~G~ 130 (170)
T d1e3ja2 94 AIGDLPNVTID---CSGNE-------------------------KCITIGINIT----RTGGTLMLVGM 130 (170)
T ss_dssp HSSSCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECSC
T ss_pred ccccCCceeee---cCCCh-------------------------HHHHHHHHHH----hcCCceEEEec
Confidence 12357998865 33331 2467778876 99999997654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.0003 Score=58.93 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=68.7
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc------c
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------L 245 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~------~ 245 (384)
...++++|++||=+||||.|....+.....+...|+++|.+++|++.++ ++|.+.+... +....... .
T Consensus 20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~----~~Ga~~~~~~--~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGADLVLQI--SKESPQEIARKVEGQ 93 (171)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCSEEEEC--SSCCHHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH----HhCCcccccc--ccccccccccccccc
Confidence 4457899999999999887765543333334358999999999998764 5687754432 22221110 1
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+..+|.|+- |+|.. ..++.+++++ ++||++++...
T Consensus 94 ~g~g~Dvvid---~~G~~-------------------------~~~~~a~~~~----~~gG~iv~~G~ 129 (171)
T d1pl8a2 94 LGCKPEVTIE---CTGAE-------------------------ASIQAGIYAT----RSGGTLVLVGL 129 (171)
T ss_dssp HTSCCSEEEE---CSCCH-------------------------HHHHHHHHHS----CTTCEEEECSC
T ss_pred CCCCceEEEe---ccCCc-------------------------hhHHHHHHHh----cCCCEEEEEec
Confidence 2357999876 44431 2467788886 99999987653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.34 E-value=0.00025 Score=59.96 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=66.7
Q ss_pred hhhcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----ccc
Q 016730 171 VMALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVL 245 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~ 245 (384)
+...++++|++||=+|||+ |..+..+++.++ ...|+++|.+++|++.++ ++|.+.+ ++.....+. +..
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~----~lGa~~~--i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAK----FYGATDI--LNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHH----HHTCSEE--ECGGGSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHH----hhCcccc--ccccchhHHHHHHHHh
Confidence 4455789999999888877 444555555543 347999999999988875 5787543 233222221 112
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+..||+|+- |+|.. ..++.+++++ +|||+++..
T Consensus 93 ~g~G~D~vid---~~g~~-------------------------~~~~~a~~~~----~~~G~iv~~ 126 (174)
T d1jqba2 93 NGKGVDRVIM---AGGGS-------------------------ETLSQAVKMV----KPGGIISNI 126 (174)
T ss_dssp TTSCEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEEC
T ss_pred hccCcceEEE---ccCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 3356999875 33331 2467788886 999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.30 E-value=0.00025 Score=60.10 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=64.9
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-------cccc
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-------PKVL 245 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-------~~~~ 245 (384)
.++++|++||-.|||| |..++.++..++ ...|+++|.+++|++.++ ++|.+.+. +..-... ....
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi--~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADLTL--NRRETSVEERRKAIMDIT 96 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSEEE--ETTTSCHHHHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccc----cccceEEE--eccccchHHHHHHHHHhh
Confidence 4678999999998875 445556666653 248999999999998764 57876432 2222221 1112
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+..||+|+- |+|.. ..+..+++.+ ++||++++.-
T Consensus 97 ~~~g~Dvvid---~vG~~-------------------------~~~~~a~~~l----~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILE---ATGDS-------------------------RALLEGSELL----RRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEE---CSSCT-------------------------THHHHHHHHE----EEEEEEEECC
T ss_pred CCCCceEEee---cCCch-------------------------hHHHHHHHHh----cCCCEEEEEe
Confidence 2356999874 44431 1356677876 9999998764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.28 E-value=0.00051 Score=59.12 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=71.5
Q ss_pred hhhhcCCCCCceEEEeccCCCh-HHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cc
Q 016730 170 PVMALAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KV 244 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGg-kt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~ 244 (384)
++...++++|++||-+||||.| .++.++..++ ..+|+++|.+++|++.++ ++|.+. +++....++. ..
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~----~~Ga~~--~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGFEI--ADLSLDTPLHEQIAAL 89 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCEE--EETTSSSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhh----hccccE--EEeCCCcCHHHHHHHH
Confidence 3455678999999999999955 4555565554 469999999999998765 568653 3232222221 11
Q ss_pred cCCCCCCEEEEcC--CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 245 LGLNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 245 ~~~~~fD~VllDa--PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
..+..+|+++-.. ||++..... ....-+ .+.++.+++.+ +|||++++.-
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~----~~~~~~-----------~~~l~~~~~~~----r~gG~v~~~G 140 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEG----AKHEAP-----------ATVLNSLMQVT----RVAGKIGIPG 140 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTG----GGSBCT-----------THHHHHHHHHE----EEEEEEEECS
T ss_pred hCCCCcEEEEECccccccCCcccc----eeecCc-----------HHHHHHHHHHH----hcCCEEEEee
Confidence 2345799987422 221111100 001111 23578888886 9999998764
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00011 Score=66.30 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=66.2
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cC-
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LG- 246 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~- 246 (384)
.+..+++.+|+.||++|+|+|..|..|++.. ..|+|+|+|+..++.+++... .-.++.++++|+..++.. ..
T Consensus 13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~~~~~~~~~~ 87 (252)
T d1qyra_ 13 IVSAINPQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp HHHHHCCCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGGCCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhh--hccchhHHhhhhhhhcccccccc
Confidence 3566788899999999999999999988753 579999999999988876432 235799999999876321 10
Q ss_pred CCCCCEEEEcCCCCCC
Q 016730 247 LNTVDRVLLDAPCSGT 262 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~ 262 (384)
...--.|+-+.|++-+
T Consensus 88 ~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 88 MGQPLRVFGNLPYNIS 103 (252)
T ss_dssp HTSCEEEEEECCTTTH
T ss_pred cCCCeEEEecchHHHH
Confidence 0223478899997554
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.09 E-value=0.00036 Score=61.99 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=64.2
Q ss_pred cceEEEeCCcCcchhh-hcC-CCCCceEEEeccCCChHHHHHHHHc---cCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 157 AGFYMLQSASSFLPVM-ALA-PQEKERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~-~L~-~~~g~~VLD~cagpGgkt~~la~~~---~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
.|.=++|.+.-+.+-. ++. .+ ..+||++|++.|+-+..++..+ +..++|+++|+++.+..... ...+++
T Consensus 58 ~G~p~~k~p~d~~~~~eli~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I 131 (232)
T d2bm8a1 58 RGLRMLKDPDTQAVYHDMLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENI 131 (232)
T ss_dssp TTEECCSCHHHHHHHHHHHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTE
T ss_pred cceecccCHHHHHHHHHHHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccccce
Confidence 4666677665443222 222 23 3489999999999888888765 35689999999876543321 123578
Q ss_pred EEEecCCCCccc--ccCCCCCCEEEEcCC
Q 016730 232 IVCNYDGNELPK--VLGLNTVDRVLLDAP 258 (384)
Q Consensus 232 ~~~~~D~~~~~~--~~~~~~fD~VllDaP 258 (384)
.++.+|...... ......+|.|++|.-
T Consensus 132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp EEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred eeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 899999876432 223357999999974
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.07 E-value=0.00036 Score=58.78 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=67.6
Q ss_pred hhcCCCCCceEEEeccCCChHHH-HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~-~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~ 247 (384)
..++++||++||=+|||+-|... .++..++ ...|++.|.++.|++.++ ++|...+ ++.+..++.. ...+
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~----~~Ga~~~--i~~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATHV--INSKTQDPVAAIKEITD 94 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHH----HcCCeEE--EeCCCcCHHHHHHHHcC
Confidence 34578999999999887766443 4454544 357889999999988875 4687643 3343333221 1223
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+.||.|+- |+|.+ ..++.+++++ +|+|++++..
T Consensus 95 gg~D~vid---~~G~~-------------------------~~~~~~~~~~----~~~G~i~~~G 127 (174)
T d1f8fa2 95 GGVNFALE---STGSP-------------------------EILKQGVDAL----GILGKIAVVG 127 (174)
T ss_dssp SCEEEEEE---CSCCH-------------------------HHHHHHHHTE----EEEEEEEECC
T ss_pred CCCcEEEE---cCCcH-------------------------HHHHHHHhcc----cCceEEEEEe
Confidence 57999986 44442 2456778886 9999998753
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.05 E-value=0.0026 Score=56.47 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=69.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
..+|||+|+|+|..+..+++..++ .+++..|... - ++..+. .++.++.+|..+.. ..+|++++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-v-------i~~~~~~~rv~~~~gD~f~~~-----p~aD~~~l-- 144 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQ-V-------VENLSGSNNLTYVGGDMFTSI-----PNADAVLL-- 144 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHH-H-------HTTCCCBTTEEEEECCTTTCC-----CCCSEEEE--
T ss_pred ceEEEEecCCccHHHHHHHHhCCC-CeEEEecCHH-H-------HHhCcccCceEEEecCcccCC-----CCCcEEEE--
Confidence 357999999999999999999875 6899999732 2 233333 46899999987532 36899987
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC---cEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG---GYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG---G~lvYsT 312 (384)
..+...|+.++. .+||+++.+.| +|| |+++...
T Consensus 145 -----------~~vLHdw~d~~~-------~~iL~~~~~al----~pgg~~~~lli~e 180 (244)
T d1fp2a2 145 -----------KYILHNWTDKDC-------LRILKKCKEAV----TNDGKRGKVTIID 180 (244)
T ss_dssp -----------ESCGGGSCHHHH-------HHHHHHHHHHH----SGGGCCCEEEEEE
T ss_pred -----------EeecccCChHHH-------HHHHHHHHHHc----CcccCCcEEEEEE
Confidence 223455666654 56888888886 998 6666543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.93 E-value=0.0022 Score=58.16 Aligned_cols=128 Identities=14% Similarity=0.148 Sum_probs=79.1
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
.+|||++||.||.+.-+-+. +--.+.|+|+++..++..+.|. .+ .++..|..++.... ...+|++..-+||
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~~-~~~~~Di~~~~~~~-~~~~dll~~g~PC 71 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSDE-FPKCDGIIGGPPC 71 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----CS-EEEESCTTTSCGGG-SCCCSEEEECCCC
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----CC-CCccCChhhCCHhH-cccccEEeecccc
Confidence 37999999999988766543 2235779999999999888774 22 34578988874422 2579999999999
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
.+.-...+.... ..+. ..+-.++++ ++..+ +|.-.++=-.-.+....+...+..+++
T Consensus 72 q~fS~ag~~~g~---~d~r-----~~l~~~~~~-~i~~~----~Pk~~~lENV~~~~~~~~~~~~~~~l~ 128 (324)
T d1dcta_ 72 QSWSEGGSLRGI---DDPR-----GKLFYEYIR-ILKQK----KPIFFLAENVKGMMAQRHNKAVQEFIQ 128 (324)
T ss_dssp TTTSSSSCCCCS---SSHH-----HHHHHHHHH-HHHHH----CCSEEEEEEEGGGGSGGGHHHHHHHHH
T ss_pred cccccccccccc---cccc-----cchHHHHHH-HHHhh----CCceeeccccccccccccchhhHHHHh
Confidence 887666553221 1111 112222222 23333 887555533344444455556655554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.87 E-value=0.002 Score=54.20 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=67.9
Q ss_pred hhcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEe-cCCCC--cccccCC
Q 016730 172 MALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDGNE--LPKVLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~-~D~~~--~~~~~~~ 247 (384)
...++++|++||=+|||+ |..++.++..++ ...|++.|.+++|++.+ +++|.+.+.... .|... ......+
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a----~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKA----KALGATDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHH----HHTTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHH----HHhCCCcccCCccchhhhhhhHhhhhc
Confidence 345689999999999988 444556666654 46899999999998665 557886543211 12110 0111234
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC-cEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG-G~lvYs 311 (384)
..+|.|+- |+|.. ..+..+++.+ ++| |+++..
T Consensus 97 ~G~d~vie---~~G~~-------------------------~~~~~a~~~~----~~g~G~~v~v 129 (174)
T d1e3ia2 97 GGVDYSLD---CAGTA-------------------------QTLKAAVDCT----VLGWGSCTVV 129 (174)
T ss_dssp SCBSEEEE---SSCCH-------------------------HHHHHHHHTB----CTTTCEEEEC
T ss_pred CCCcEEEE---ecccc-------------------------hHHHHHHHHh----hcCCeEEEec
Confidence 67999976 55552 2567888886 886 999874
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.79 E-value=0.0083 Score=54.60 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||++||.||.+..+-+. +--.|.|+|+++..++..+.|... ..++|.+++.... ...+|+|+.-|
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~-------~~~~Di~~~~~~~-~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGE-------KPEGDITQVNEKT-IPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSC-------CCBSCGGGSCGGG-SCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCC-------CCcCchhcCchhh-cceeeeeeccc
Confidence 5789999999999988766443 223678899999999999988631 1257777664322 25799999999
Q ss_pred CCCCCCcCCCC
Q 016730 258 PCSGTGVISKD 268 (384)
Q Consensus 258 PCSg~G~~~r~ 268 (384)
||.+.-...+.
T Consensus 80 PCq~fS~ag~~ 90 (327)
T d2c7pa1 80 PCQAFSISGKQ 90 (327)
T ss_dssp CCTTTCTTSCC
T ss_pred ccchhhhhhhh
Confidence 99777655543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.78 E-value=0.00029 Score=58.95 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=48.6
Q ss_pred hcCCCCCceEEEeccCCCh-HHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGg-kt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+++||++||-+|+|+-| .+..++..++ .+|+++|.+++|++.++ ++|.+.+.....+. +.... ..+.||
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~----~lGa~~~i~~~~~~-~~~~~-~~~~~d 93 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAM----KMGADHYIATLEEG-DWGEK-YFDTFD 93 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHH----HHTCSEEEEGGGTS-CHHHH-SCSCEE
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhh----ccCCcEEeeccchH-HHHHh-hhcccc
Confidence 3578899999999887544 3444555543 58999999999987654 57887543322222 22211 136799
Q ss_pred EEEE
Q 016730 252 RVLL 255 (384)
Q Consensus 252 ~Vll 255 (384)
.|+.
T Consensus 94 ~vi~ 97 (168)
T d1piwa2 94 LIVV 97 (168)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9875
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0007 Score=62.20 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=51.2
Q ss_pred ceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEEEcC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLDA 257 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~VllDa 257 (384)
.+|+|++||.||.++.+-.. +-.. .|.|+|+++..++..+.|. .+..+++.|..++... +....+|+++.-|
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 57999999999988765443 2112 4789999999999988774 2334556777655321 1113699999999
Q ss_pred CCCCCCcCCC
Q 016730 258 PCSGTGVISK 267 (384)
Q Consensus 258 PCSg~G~~~r 267 (384)
||.+.-+..+
T Consensus 77 PCq~fS~ag~ 86 (343)
T d1g55a_ 77 PCQPFTRIGR 86 (343)
T ss_dssp C---------
T ss_pred cccccccccc
Confidence 9988766554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.63 E-value=0.0017 Score=54.53 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=52.0
Q ss_pred hhcCCCCCceEEEeccCCChHHHH-HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEE-EecCCC--CcccccCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGN--ELPKVLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~-~~~D~~--~~~~~~~~ 247 (384)
...++++|++||=.|||+.|.... ++..++ ...|+++|.+++|++.++ ++|.+.+.- ...|.. .......+
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~----~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAI----ELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHH----HcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 345689999999999988776553 444443 468999999999998775 578765421 112211 01111234
Q ss_pred CCCCEEEEc
Q 016730 248 NTVDRVLLD 256 (384)
Q Consensus 248 ~~fD~VllD 256 (384)
..+|.|+-.
T Consensus 96 ~G~d~vid~ 104 (174)
T d1p0fa2 96 GGVDYAVEC 104 (174)
T ss_dssp SCBSEEEEC
T ss_pred CCCcEEEEc
Confidence 579999873
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.51 E-value=0.0063 Score=53.72 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=67.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
..+|||+|+|+|..+..+++..++ .+++..|+... + +..+ ..++.+..+|..... ...|.+++=
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~-----P~ad~~~l~- 146 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSI-----PKADAVFMK- 146 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCC-----CCCSCEECS-
T ss_pred CcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHh-h-------hhcccCCceEEecccccccC-----CCcceEEEE-
Confidence 468999999999999999999875 68999998542 2 1112 245888888876421 124555430
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.+...|+.++. .+||+++.+.| +|||+++....-+
T Consensus 147 ------------~vlh~~~d~~~-------~~iL~~~~~al----~pgg~~li~d~~~ 181 (243)
T d1kyza2 147 ------------WICHDWSDEHC-------LKFLKNCYEAL----PDNGKVIVAECIL 181 (243)
T ss_dssp ------------SSSTTSCHHHH-------HHHHHHHHHHC----CSSSCEEEEECEE
T ss_pred ------------EEeecCCHHHH-------HHHHHHHHHhc----CCCceEEEEEEEe
Confidence 12334555443 56889999986 9999998876544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.50 E-value=0.0049 Score=51.69 Aligned_cols=80 Identities=10% Similarity=0.067 Sum_probs=51.4
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~ 247 (384)
...++++|+.||=.|||+.|..........+..+|+++|.+++|++.++ .+|.+.+.- ..|.... .....+
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak----~~GA~~~in-~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM----AVGATECIS-PKDSTKPISEVLSEMTG 97 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HHTCSEEEC-GGGCSSCHHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH----hcCCcEEEC-ccccchHHHHHHHHhcc
Confidence 3456899999999999887765533333334468999999999998775 467764321 1222221 111234
Q ss_pred CCCCEEEEc
Q 016730 248 NTVDRVLLD 256 (384)
Q Consensus 248 ~~fD~VllD 256 (384)
..+|.|+-.
T Consensus 98 ~G~d~vi~~ 106 (176)
T d1d1ta2 98 NNVGYTFEV 106 (176)
T ss_dssp SCCCEEEEC
T ss_pred ccceEEEEe
Confidence 679999873
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.46 E-value=0.0019 Score=53.29 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=64.4
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTV 250 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~f 250 (384)
..+++||++||=.|+||-|..........+ .+|+++|.+++|++.+ +++|.+.+.. ..-.++.... ....+
T Consensus 22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~----k~~Ga~~~~~--~~~~~~~~~~~~~~~~~ 94 (168)
T d1rjwa2 22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELA----KELGADLVVN--PLKEDAAKFMKEKVGGV 94 (168)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHH----HHTTCSEEEC--TTTSCHHHHHHHHHSSE
T ss_pred HhCCCCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhh----hhcCcceecc--cccchhhhhcccccCCC
Confidence 456889999999999887765543333333 5899999999998766 4578764322 2111211100 01346
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|.++.|++ . ...+..+++.+ +|||++++.-
T Consensus 95 ~~~v~~~~---~-------------------------~~~~~~a~~~l----~~~G~i~~~g 124 (168)
T d1rjwa2 95 HAAVVTAV---S-------------------------KPAFQSAYNSI----RRGGACVLVG 124 (168)
T ss_dssp EEEEESSC---C-------------------------HHHHHHHHHHE----EEEEEEEECC
T ss_pred ceEEeecC---C-------------------------HHHHHHHHHHh----ccCCceEecc
Confidence 66777654 1 12467888886 9999998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.39 E-value=0.0027 Score=52.86 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCCCceEEEeccCCChHHH-HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc---ccccCCCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL---PKVLGLNTVD 251 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~-~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~---~~~~~~~~fD 251 (384)
++||+.||=.|+|+.|... .++..++ ...|+++|.+++|++.++ ++|...+ +..+.... .....+..+|
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~----~~ga~~~--i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAE----RLGADHV--VDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHH----HTTCSEE--EETTSCHHHHHHHHTTTCCEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHh----hccccee--ecCcccHHHHHHHhhCCCCce
Confidence 5789999999998877654 4555554 358999999999988776 4676543 33332211 1112335799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|+- |+|.. ..+..+++.+ ++||+++...
T Consensus 103 ~vid---~~g~~-------------------------~~~~~a~~~l----~~~G~iv~~G 131 (172)
T d1h2ba2 103 VAMD---FVGSQ-------------------------ATVDYTPYLL----GRMGRLIIVG 131 (172)
T ss_dssp EEEE---SSCCH-------------------------HHHHHGGGGE----EEEEEEEECC
T ss_pred EEEE---ecCcc-------------------------hHHHHHHHHH----hCCCEEEEEe
Confidence 9876 33331 2467788886 9999999754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.35 E-value=0.0045 Score=51.15 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=64.6
Q ss_pred hhcCCCCCceEEEecc-CCChH-HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc----cc
Q 016730 172 MALAPQEKERVIDMAA-APGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VL 245 (384)
Q Consensus 172 ~~L~~~~g~~VLD~ca-gpGgk-t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----~~ 245 (384)
...++++|++||=.|+ |+.|. +..++..++ ...|+++|.+++|++.+++ +|.+.+ +..+..++.. ..
T Consensus 21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~~~--i~~~~~~~~~~~~~~~ 93 (170)
T d1jvba2 21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGADYV--INASMQDPLAEIRRIT 93 (170)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHT
T ss_pred HHhCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH----cCCcee--eccCCcCHHHHHHHHh
Confidence 3457889999999985 55444 344555553 3589999999999888764 687643 3333333211 11
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+..||.|+- |+|.. ..++.+++.+ +|||+++..
T Consensus 94 ~~~~~d~vid---~~g~~-------------------------~~~~~a~~~l----~~~G~iv~~ 127 (170)
T d1jvba2 94 ESKGVDAVID---LNNSE-------------------------KTLSVYPKAL----AKQGKYVMV 127 (170)
T ss_dssp TTSCEEEEEE---SCCCH-------------------------HHHTTGGGGE----EEEEEEEEC
T ss_pred hcccchhhhc---ccccc-------------------------hHHHhhhhhc----ccCCEEEEe
Confidence 2356998875 44442 2445667775 999998753
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.34 E-value=0.0014 Score=58.50 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=60.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccC---------------------------------------CceEEEEeCCHHHHH
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKN---------------------------------------TGLIYANEMKASRLK 217 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~---------------------------------------~g~V~a~D~~~~rl~ 217 (384)
..+..++|-|||+|...+..+.+..+ ...+++.|++++.++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 34567999999999877655443211 124789999999888
Q ss_pred HH---HHHHHHcCCce-EEEEecCCCCcccc---cCCCCCCEEEEcCCC
Q 016730 218 SL---TANLHRMGVTN-TIVCNYDGNELPKV---LGLNTVDRVLLDAPC 259 (384)
Q Consensus 218 ~l---~~n~~r~g~~~-v~~~~~D~~~~~~~---~~~~~fD~VllDaPC 259 (384)
.+ ++|+++.|+.. +.+...|+...... ......++|++|||+
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY 177 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY 177 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence 87 57999999875 77888888765321 123567999999995
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.14 E-value=0.011 Score=48.67 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=63.7
Q ss_pred hhcCCCCCceEEEeccCCChHH-HHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc---cccCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKT-TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt-~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~---~~~~~ 247 (384)
...+++||++||=.|||+.|.. ..++..++ ...|++.|.+++|++.++ ++|.+.+.....+..... ....+
T Consensus 22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak----~lGa~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2fzwa2 22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATECINPQDFSKPIQEVLIEMTD 96 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHH----HhCCcEEEeCCchhhHHHHHHHHHcC
Confidence 3457899999998888755443 34555554 368999999999987654 678875432111111111 11123
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..+|.|+- |+|.. ..++.+..++ ++||.+++.
T Consensus 97 ~g~D~vid---~~G~~-------------------------~~~~~~~~~~----~~g~~~~~v 128 (176)
T d2fzwa2 97 GGVDYSFE---CIGNV-------------------------KVMRAALEAC----HKGWGVSVV 128 (176)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTB----CTTTCEEEE
T ss_pred CCCcEeee---cCCCH-------------------------HHHHHHHHhh----cCCceeEEE
Confidence 67999986 33321 2456677775 888887764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0085 Score=49.69 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=61.6
Q ss_pred hcCCCCCceEEEecc-C-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccC
Q 016730 173 ALAPQEKERVIDMAA-A-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLG 246 (384)
Q Consensus 173 ~L~~~~g~~VLD~ca-g-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~ 246 (384)
..++++|++||-.+| | -|..++.++..++ .+|++.+.++++++.++ ++|.+.+. +..-.++. ....
T Consensus 23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~vi--~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 23 SACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVL----QNGAHEVF--NHREVNYIDKIKKYVG 94 (174)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTCSEEE--ETTSTTHHHHHHHHHC
T ss_pred HhCCCCCCEEEEEeccccccccccccccccC--ccccccccccccccccc----ccCccccc--ccccccHHHHhhhhhc
Confidence 346789999999886 2 2334455666653 58999998988877664 57887542 33222221 1123
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+..||+|+- +. | ...+..+++.+ +|||++|..
T Consensus 95 ~~g~d~v~d-~~--g--------------------------~~~~~~~~~~l----~~~G~iv~~ 126 (174)
T d1yb5a2 95 EKGIDIIIE-ML--A--------------------------NVNLSKDLSLL----SHGGRVIVV 126 (174)
T ss_dssp TTCEEEEEE-SC--H--------------------------HHHHHHHHHHE----EEEEEEEEC
T ss_pred cCCceEEee-cc--c--------------------------HHHHHHHHhcc----CCCCEEEEE
Confidence 467998864 22 1 12456677776 999999864
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.07 E-value=0.0085 Score=49.60 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=51.1
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC-c----ccccCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-L----PKVLGL 247 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~-~----~~~~~~ 247 (384)
..++++|++||=.|+|++|-...+.........|+++|.+++|++.++ .+|.+.+. +..-.. . .....+
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd~~i--n~~~~~~~~~~~~~~~~~ 96 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATDFV--NPNDHSEPISQVLSKMTN 96 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCEEE--CGGGCSSCHHHHHHHHHT
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCcEEE--cCCCcchhHHHHHHhhcc
Confidence 457899999999999997765544444444578999999999987754 68876533 322111 1 111123
Q ss_pred CCCCEEEE
Q 016730 248 NTVDRVLL 255 (384)
Q Consensus 248 ~~fD~Vll 255 (384)
..+|.|+-
T Consensus 97 ~G~d~vid 104 (175)
T d1cdoa2 97 GGVDFSLE 104 (175)
T ss_dssp SCBSEEEE
T ss_pred CCcceeee
Confidence 57999976
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.93 E-value=0.017 Score=47.84 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=50.1
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLN 248 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~~ 248 (384)
..+++||++||=.|||++|-+............|+++|.+++|++.++ ++|...+.. ..+..+. .....++
T Consensus 23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~----~~Ga~~~i~-~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGATECVN-PQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCSEEEC-GGGCSSCHHHHHHHHTTS
T ss_pred hhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH----HhCCeeEEe-cCCchhHHHHHHHHHhcC
Confidence 356899999999999877655433333334469999999999988764 567664322 2222221 1112346
Q ss_pred CCCEEEE
Q 016730 249 TVDRVLL 255 (384)
Q Consensus 249 ~fD~Vll 255 (384)
.+|.|+-
T Consensus 98 G~D~vid 104 (176)
T d2jhfa2 98 GVDFSFE 104 (176)
T ss_dssp CBSEEEE
T ss_pred CCCEEEe
Confidence 7998876
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.77 E-value=0.0055 Score=50.39 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=62.7
Q ss_pred hhcCCCCCceEEEeccCCChHHH-HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLN 248 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~-~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~ 248 (384)
...++++|++||=.|+|+=|... .++..+ + .+|+++|.+++|++.++ ++|.+.+ ++.+..+..... ...
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G-~~Vi~~~~~~~~~~~a~----~~Ga~~~--i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAM-G-LHVAAIDIDDAKLELAR----KLGASLT--VNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHHS
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHc-C-CccceecchhhHHHhhh----ccCcccc--ccccchhHHHHHHHhhc
Confidence 34578999999988887755433 444444 3 68999999999997664 5787643 233322221100 013
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.++.+ ++.+ ..+..+++.+ ++||+++...
T Consensus 93 g~~~~i~~---~~~~-------------------------~~~~~~~~~l----~~~G~iv~~G 124 (166)
T d1llua2 93 GAHGVLVT---AVSN-------------------------SAFGQAIGMA----RRGGTIALVG 124 (166)
T ss_dssp SEEEEEEC---CSCH-------------------------HHHHHHHTTE----EEEEEEEECC
T ss_pred CCcccccc---cccc-------------------------hHHHHHHHHh----cCCcEEEEEE
Confidence 45656553 2322 2456678876 9999998754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.0084 Score=55.30 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=49.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~ 241 (384)
+++.|||+|.|+|..|..|....+. .+|+|+|+|+.-++.+++... -.++.++++|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence 4678999999999999999887532 489999999999998887643 25688889998764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.66 E-value=0.0073 Score=52.66 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
-.+|+.|||.+||+|.. +..|..++ -.-+++|++++-++.++++++
T Consensus 210 s~~gd~VlDpF~GSGTT-~~aa~~~~--R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTT-AIVAKKLG--RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHH-HHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHH-HHHHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence 36899999999999974 34455543 478999999999999999876
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.43 E-value=0.0096 Score=52.57 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=39.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g 227 (384)
-.+|+.|||.+||+|.. ++.|..++ -+-+++|+++.-++.++++++...
T Consensus 205 s~~gdiVLDpF~GSGTT-~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~~~ 253 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVT-ARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQ 253 (279)
T ss_dssp SCTTCEEEETTCTTCHH-HHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred cCCCCEEEecCCCCcHH-HHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhh
Confidence 35899999999999974 44445543 479999999999999999998754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0072 Score=49.91 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=61.2
Q ss_pred hhcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 172 MALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+++||++||=.|+|+ |..+..++..++ ..++++|.++++++.+ +++|.+.+. +..-.... ......|
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a----~~lGad~~i--~~~~~~~~-~~~~~~~ 94 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAA----KALGADEVV--NSRNADEM-AAHLKSF 94 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHH----HHHTCSEEE--ETTCHHHH-HTTTTCE
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHH----hccCCcEEE--ECchhhHH-HHhcCCC
Confidence 345789999999887754 223344444442 4788899999987654 467876432 22211111 1123579
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|.|+- |+|... -+..+++++ ++||+++...
T Consensus 95 D~vid---~~g~~~-------------------------~~~~~~~~l----~~~G~iv~~G 124 (168)
T d1uufa2 95 DFILN---TVAAPH-------------------------NLDDFTTLL----KRDGTMTLVG 124 (168)
T ss_dssp EEEEE---CCSSCC-------------------------CHHHHHTTE----EEEEEEEECC
T ss_pred ceeee---eeecch-------------------------hHHHHHHHH----hcCCEEEEec
Confidence 99886 443321 235667775 9999998654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.19 E-value=0.0091 Score=50.19 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=65.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
..++|++|| +.+|.||.+....++.+. ..+|++.-.++++.+.++ .+|.+.+.-...+.........++.||+|
T Consensus 28 ~~~~g~~VL-I~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 28 LTPERGPVL-VTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VLGAKEVLAREDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp CCGGGCCEE-ESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HTTCSEEEECC---------CCSCCEEEE
T ss_pred CCCCCCEEE-EEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH----hcccceeeecchhHHHHHHHhhccCcCEE
Confidence 456789999 555556655544444322 358999988888876664 57887543322211111122234689977
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
+ |.- | | ..+..+++.| ++||+++....+--++-+-.+-..+++
T Consensus 103 i-d~v--g-g-------------------------~~~~~~l~~l----~~~Griv~~G~~~g~~~~~~~~~~~~k 145 (176)
T d1xa0a2 103 V-DPV--G-G-------------------------RTLATVLSRM----RYGGAVAVSGLTGGAEVPTTVHPFILR 145 (176)
T ss_dssp E-ECS--T-T-------------------------TTHHHHHHTE----EEEEEEEECSCCSSSCCCCCSHHHHHT
T ss_pred E-EcC--C-c-------------------------hhHHHHHHHh----CCCceEEEeecccCcccCCCHHHHHHC
Confidence 5 432 1 1 1356677776 999999987665434333333333433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.14 E-value=0.0054 Score=51.05 Aligned_cols=95 Identities=22% Similarity=0.367 Sum_probs=59.0
Q ss_pred hcCCCCCceEEEecc-CC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc-cccCCCC
Q 016730 173 ALAPQEKERVIDMAA-AP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNT 249 (384)
Q Consensus 173 ~L~~~~g~~VLD~ca-gp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~-~~~~~~~ 249 (384)
..+++||++||=.|+ |+ |..+..++..++ .+|++++.++++++.++ .+|.+.+.- . .+.. .......
T Consensus 22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~----~lGa~~~i~--~--~~~~~~~~~~~g 91 (171)
T d1iz0a2 22 RAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPL----ALGAEEAAT--Y--AEVPERAKAWGG 91 (171)
T ss_dssp HTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHH----HTTCSEEEE--G--GGHHHHHHHTTS
T ss_pred HhCCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccccccccc----ccccceeee--h--hhhhhhhhcccc
Confidence 346789999997764 33 233444555543 58999999998887664 578875432 1 1111 1112357
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|+|+ | |+|. .+..+++.+ +|||+++..
T Consensus 92 ~D~v~-d--~~G~---------------------------~~~~~~~~l----~~~G~~v~~ 119 (171)
T d1iz0a2 92 LDLVL-E--VRGK---------------------------EVEESLGLL----AHGGRLVYI 119 (171)
T ss_dssp EEEEE-E--CSCT---------------------------THHHHHTTE----EEEEEEEEC
T ss_pred ccccc-c--ccch---------------------------hHHHHHHHH----hcCCcEEEE
Confidence 99874 6 6552 134567775 999998753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.78 E-value=0.011 Score=53.15 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~ 226 (384)
-.+|+.|||.+||+|.. ++.|..++ -.-+++|++++-++.+++++...
T Consensus 248 s~~gdiVlDpF~GSGTT-~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTT-GLVAERES--RKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHH-HHHHHHTT--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHH-HHHHHHcC--CcEEEEeCCHHHHHHHHHHHHhc
Confidence 35899999999999973 34444443 47999999999999998776543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.68 E-value=0.022 Score=47.13 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=59.1
Q ss_pred hhcCCCCCceEEEeccCCChH---HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc----c
Q 016730 172 MALAPQEKERVIDMAAAPGGK---TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----V 244 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgk---t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----~ 244 (384)
....+++|++||=.+ |.|+. ++.++..++ ..|++...++++.+.++ ++|.+.+. ...-.++.. .
T Consensus 19 ~~~~~~~g~~VlI~g-a~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~----~~Ga~~vi--~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHS-ATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLS----RLGVEYVG--DSRSVDFADEILEL 89 (183)
T ss_dssp TTSCCCTTCEEEETT-TTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----TTCCSEEE--ETTCSTHHHHHHHH
T ss_pred HHhCCCCCCEEEEEC-CCCCcccccchhhcccc--ccceeeecccccccccc----cccccccc--cCCccCHHHHHHHH
Confidence 334678999999654 34444 445555543 58888888888876654 57887542 332223211 1
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
..+..||+|+. |.| | +.+..+++.| +++|++|.
T Consensus 90 t~~~g~d~v~d---~~g-~-------------------------~~~~~~~~~l----~~~G~~v~ 122 (183)
T d1pqwa_ 90 TDGYGVDVVLN---SLA-G-------------------------EAIQRGVQIL----APGGRFIE 122 (183)
T ss_dssp TTTCCEEEEEE---CCC-T-------------------------HHHHHHHHTE----EEEEEEEE
T ss_pred hCCCCEEEEEe---ccc-c-------------------------hHHHHHHHHh----cCCCEEEE
Confidence 23467999985 211 1 2456677776 99999875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.37 Score=42.03 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~--------~~ 247 (384)
+|..||=.|++ +|.+..++..+ .....|+..+.++++++.+.+.++..+.. .+..+..|..+..... ..
T Consensus 9 k~Kv~lITGas-~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 36667766655 56677777655 34458999999999999999999988765 5777789998742110 12
Q ss_pred CCCCEEEEcCCCCCCC
Q 016730 248 NTVDRVLLDAPCSGTG 263 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G 263 (384)
+..|.++.+|.....+
T Consensus 88 g~iD~lVnnAg~~~~~ 103 (257)
T d1xg5a_ 88 SGVDICINNAGLARPD 103 (257)
T ss_dssp CCCSEEEECCCCCCCC
T ss_pred CCCCEEEecccccCCC
Confidence 6799998877543333
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.063 Score=44.10 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=47.4
Q ss_pred hcCCCCCceEEEeccCC--ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc----ccC
Q 016730 173 ALAPQEKERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK----VLG 246 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagp--Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~----~~~ 246 (384)
..+++||++||=.++|. |.....++..++ .+|++.+.++++++.++ .+|.+.+ ++.+-.++.. ...
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~----~lGa~~v--i~~~~~d~~~~v~~~t~ 94 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSAL----KAGAWQV--INYREEDLVERLKEITG 94 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----HHTCSEE--EETTTSCHHHHHHHHTT
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHH----hcCCeEE--EECCCCCHHHHHHHHhC
Confidence 34678999998775554 334455666553 68999999999987765 4787643 3333333321 123
Q ss_pred CCCCCEEEE
Q 016730 247 LNTVDRVLL 255 (384)
Q Consensus 247 ~~~fD~Vll 255 (384)
+..+|+|+-
T Consensus 95 g~g~d~v~d 103 (179)
T d1qora2 95 GKKVRVVYD 103 (179)
T ss_dssp TCCEEEEEE
T ss_pred CCCeEEEEe
Confidence 467887653
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.01 E-value=0.063 Score=44.48 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=59.8
Q ss_pred hhcCCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cc
Q 016730 172 MALAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KV 244 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~ 244 (384)
...++++|++||=.+|+. +.+. .++..++ .+|+++..++++++.+ +.+|.+.+.. .+-.... ..
T Consensus 23 ~~~~v~~G~~VlV~ga~g-gvG~~aiqlak~~G--a~vi~~~~~~~~~~~~----~~~Ga~~vi~--~~~~~~~~~~~~~ 93 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAG-AVGSVVGQIAKLKG--CKVVGAAGSDEKIAYL----KQIGFDAAFN--YKTVNSLEEALKK 93 (182)
T ss_dssp TTTCCCSSCEEEESSTTS-HHHHHHHHHHHHTT--CEEEEEESSHHHHHHH----HHTTCSEEEE--TTSCSCHHHHHHH
T ss_pred HHhCCCCCCEEEEEeCCC-chhHHHHHHHHccC--CEEEEeCCCHHHHHHH----Hhhhhhhhcc--cccccHHHHHHHH
Confidence 345789999999555544 3333 4444442 5899999999887665 4568765432 2222221 11
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
.....+|+|+- |+| | +.+..+++.+ ++||+++-
T Consensus 94 ~~~~Gvd~v~D---~vG-~-------------------------~~~~~~~~~l----~~~G~~v~ 126 (182)
T d1v3va2 94 ASPDGYDCYFD---NVG-G-------------------------EFLNTVLSQM----KDFGKIAI 126 (182)
T ss_dssp HCTTCEEEEEE---SSC-H-------------------------HHHHHHGGGE----EEEEEEEE
T ss_pred hhcCCCceeEE---ecC-c-------------------------hhhhhhhhhc----cCCCeEEe
Confidence 23467999864 222 1 2456778876 99999884
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.8 Score=39.52 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|..||=.||+.| .+..++..+ .....|+.+|.++++++.+.+.+...|. ++..+..|.++..... ..+
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4777776666655 556555543 3446899999999999999999988875 5667788998753210 236
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.++.
T Consensus 84 ~idilinnag 93 (244)
T d1yb1a_ 84 DVSILVNNAG 93 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCceeEeecc
Confidence 7999988554
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.49 E-value=0.08 Score=49.88 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=48.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
..+.+++.++|+||--|..+..++...++. ++|+|+|.++.-.+.+++|++.++..
T Consensus 208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~ 264 (395)
T d2py6a1 208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT 264 (395)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 346789999999999999988888776543 58999999999999999999988754
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.27 Score=43.18 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=77.7
Q ss_pred CceEEEeccCCChHHHHHHHHc-c-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM-K-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~-~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
|.+|-=+.-|.+|.+..++..+ . +...|+..+.+.++++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 6777556666777787777644 2 346899999999999999999988875 4667788988753210 125
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.|.++.+|-....+.... .+.++... ...-...+.+.++..+ +++|++|..+.
T Consensus 81 ~iDiLVnNAGi~~~~~~~~-------~~~~~~~~~~~vN~~g~~~l~~~~lp~m----~~~g~ivnisS 138 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPT-------PFHIQAEVTMKTNFFGTRDVCTELLPLI----KPQGRVVNVSS 138 (275)
T ss_dssp SEEEEEECCCCCCCTTCCS-------CHHHHHHHHHHHHTHHHHHHHHHHGGGE----EEEEEEEEECC
T ss_pred CcEEEEEcCCcCCCCCccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCcccccc
Confidence 7999999874322221111 11222221 1222334556666664 88999887653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.20 E-value=0.38 Score=41.73 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=59.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~ 248 (384)
+|..+|=.| |++|.+..++..+.. ...|+.+|.++++++.+.+.++..|.+ +..+..|.++.... ...+
T Consensus 9 enKvalITG-as~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~-~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE-SSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCC-EEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 365666555 456678888876544 458999999999999999999888764 66668899874211 1226
Q ss_pred CCCEEEEcCCCCCCC
Q 016730 249 TVDRVLLDAPCSGTG 263 (384)
Q Consensus 249 ~fD~VllDaPCSg~G 263 (384)
..|.++.++.....+
T Consensus 87 ~iDilvnnag~~~~~ 101 (251)
T d2c07a1 87 NVDILVNNAGITRDN 101 (251)
T ss_dssp CCCEEEECCCCCCCC
T ss_pred Cceeeeecccccccc
Confidence 899988877544433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.36 E-value=0.92 Score=39.34 Aligned_cols=82 Identities=9% Similarity=-0.044 Sum_probs=57.6
Q ss_pred CCceEEEeccCCChHHHHHHHH-ccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---------cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAAL-MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~-~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---------~~~ 247 (384)
.|.+||=.||+ +|.+..++.. ......|+.++.++++++.+.+.+...+.. +.++..|..+.... ..+
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~-~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLN-VEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC-EEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 47788866665 6667777754 344568999999999999999999888864 56667898875321 112
Q ss_pred CCCCEEEEcCCCCC
Q 016730 248 NTVDRVLLDAPCSG 261 (384)
Q Consensus 248 ~~fD~VllDaPCSg 261 (384)
+..|.++..+.-..
T Consensus 83 g~idilinnag~~~ 96 (258)
T d1ae1a_ 83 GKLNILVNNAGVVI 96 (258)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCcEEEeccccccc
Confidence 46888887665433
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.26 E-value=0.12 Score=44.99 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=56.2
Q ss_pred ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 229 ~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
++-.++.+|..+....++++++|.|+.|||.. .|. .+ |... ..........+..+.++| ||||.+
T Consensus 3 ~~~~~~~~D~le~l~~l~d~SIDliitDPPYn-~~~--~~----~~~~----~~y~~~~~~~~~e~~rvL----k~~G~~ 67 (279)
T d1eg2a_ 3 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYN-IML--AD----WDDH----MDYIGWAKRWLAEAERVL----SPTGSI 67 (279)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSB-CCG--GG----GGTC----SSHHHHHHHHHHHHHHHE----EEEEEE
T ss_pred ccceEEechHHHHHhhCcCCCccEEEECCCCC-CCc--cc----ccCH----HHHHHHHHHHHHHHHHHh----CCCccE
Confidence 34456678888765556678999999999973 221 11 1111 112334456788888876 999988
Q ss_pred EEEe-----ccCCccccHHHHHHHHhcCCCEEee
Q 016730 309 VYST-----CSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 309 vYsT-----CSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
+... +.....+.-..+..+.+..++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (279)
T d1eg2a_ 68 AIFGGLQYQGEAGSGDLISIISHMRQNSKMLLAN 101 (279)
T ss_dssp EEEECSCCCCCTTBCCHHHHHHHHHHHCCCEEEE
T ss_pred EEecCccccccccccchhhHHHHHHhccCceeee
Confidence 6532 1122334445555666666766543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.07 E-value=0.45 Score=41.43 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=57.5
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|..+|=.|++ +|.+..++..+ .....|+.+|.++++++.+.+.++..|.+ +..+..|.++..... ..+
T Consensus 4 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTGAG-GNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE-ARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 47778866655 55666666544 34468999999999999999999888764 566688988742110 126
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
..|.++.++...
T Consensus 82 ~iDilVnnaG~~ 93 (260)
T d1zema1 82 KIDFLFNNAGYQ 93 (260)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCeehhhhccc
Confidence 799999877644
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.06 E-value=0.69 Score=40.51 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=57.8
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCccccc--------C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~~--------~ 246 (384)
.|.++|=.|++ +|.+..++..+ .....|+.+|.++++++.+.+.+...|.. ++..+..|..+..... .
T Consensus 3 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSS-NGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 46777766655 55677666654 34458999999999999999999998864 5788889988753210 1
Q ss_pred CCCCCEEEEcCC
Q 016730 247 LNTVDRVLLDAP 258 (384)
Q Consensus 247 ~~~fD~VllDaP 258 (384)
.+..|.++.++-
T Consensus 82 ~G~iDilVnnAG 93 (274)
T d1xhla_ 82 FGKIDILVNNAG 93 (274)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCceEEEeecc
Confidence 257899988663
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=91.69 E-value=0.074 Score=43.84 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 176 PQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.++|+.|| +-+|.||.+. +||..++ .+|++..-++++.+.+ +++|.+.+.....+.........++.+|.
T Consensus 21 ~~~~~~VL-V~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~----~~lGad~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 21 SPEKGSVL-VTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYL----KQLGASEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp CGGGCCEE-EESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHH----HHHTCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCCCEEE-EeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHH----HhhcccceEeccchhchhhhcccCCCceE
Confidence 34577788 4566666555 4555553 5899999888777665 55788765332211111111123467898
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|+- .- | -..+..+++.| ++||++|..-++-.
T Consensus 94 vid-~v--g--------------------------g~~~~~~~~~l----~~~G~iv~~G~~~g 124 (167)
T d1tt7a2 94 AVD-PV--G--------------------------GKQLASLLSKI----QYGGSVAVSGLTGG 124 (167)
T ss_dssp EEE-SC--C--------------------------THHHHHHHTTE----EEEEEEEECCCSSC
T ss_pred EEe-cC--c--------------------------HHHHHHHHHHh----ccCceEEEeeccCC
Confidence 754 32 1 12466778886 99999987666554
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.46 E-value=1.6 Score=37.61 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=56.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---------cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---------~~~ 247 (384)
.|.++|=.|++ +|.+..++..+- ....|+.+|.++++++.+.+.+...|. ++.++..|..+.... .-+
T Consensus 7 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 47788866655 566777776553 345899999999999999999988775 566667898864211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
.+.|.++.++-
T Consensus 85 ~~idilvnnAG 95 (259)
T d2ae2a_ 85 GKLNILVNNAG 95 (259)
T ss_dssp TCCCEEEECCC
T ss_pred CCceEEEECCc
Confidence 36899988654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.44 E-value=0.07 Score=47.44 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=46.1
Q ss_pred EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 231 v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
-.++++|..+....++.+++|+|+.|||.- +|. . +........+......+.+..+.++| +++|.++.
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~-~~~--~-----~~~~~~~~~~y~~~~~~~l~~~~rvL----k~~G~i~i 80 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFA-LQR--K-----KEYGNLEQHEYVDWFLSFAKVVNKKL----KPDGSFVV 80 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCS-SSC--S-----CSSCSCHHHHHHHHHHHHHHHHHHHE----EEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCc-CCC--C-----CCCCCCCHHHHHHHHHHHHHHHHHhC----cccCcccc
Confidence 467789988765566778999999999983 221 1 01111122344555677888888886 99999875
Q ss_pred E
Q 016730 311 S 311 (384)
Q Consensus 311 s 311 (384)
.
T Consensus 81 ~ 81 (320)
T d1booa_ 81 D 81 (320)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.41 E-value=0.86 Score=39.63 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=58.1
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+|.+||=.||+.| .+..+|..+ ..+..|+.++.+.++++.+.+.+...+...+.....|........ ..+
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g 91 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 91 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence 5888887776655 566666644 344689999999999999988877666556667677776532110 125
Q ss_pred CCCEEEEcCCCCCCC
Q 016730 249 TVDRVLLDAPCSGTG 263 (384)
Q Consensus 249 ~fD~VllDaPCSg~G 263 (384)
..|.++.++.-...+
T Consensus 92 ~~~~li~nag~~~~~ 106 (269)
T d1xu9a_ 92 GLDMLILNHITNTSL 106 (269)
T ss_dssp SCSEEEECCCCCCCC
T ss_pred Ccccccccccccccc
Confidence 789998887544443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.38 E-value=0.94 Score=39.09 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=53.0
Q ss_pred EEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCCEE
Q 016730 183 IDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRV 253 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD~V 253 (384)
|=.| |.+|.+..++..+ .....|+.+|.++++++.+.+.++..|.+ +..+..|.++..... ..++.|.+
T Consensus 5 lITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (255)
T d1gega_ 5 LVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH-AVAVKVDVSDRDQVFAAVEQARKTLGGFDVI 82 (255)
T ss_dssp EEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC-EEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEcC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 4445 4566777777654 34458999999999999999999988864 666688998743210 12689999
Q ss_pred EEcCC
Q 016730 254 LLDAP 258 (384)
Q Consensus 254 llDaP 258 (384)
+.+|-
T Consensus 83 VnnAG 87 (255)
T d1gega_ 83 VNNAG 87 (255)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 88663
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.78 E-value=0.79 Score=39.59 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=52.3
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|..+|=.| |.+|.+..++..+ .....|+.+|.++++++.+.+.+..- .++.++..|..+..... ..+
T Consensus 5 ~gK~alVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777555 4556667666654 34468999999999998887776432 35777889998743110 126
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.++.
T Consensus 82 ~iDiLVnnAg 91 (251)
T d1zk4a1 82 PVSTLVNNAG 91 (251)
T ss_dssp SCCEEEECCC
T ss_pred CceEEEeccc
Confidence 7998887663
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.62 E-value=1.2 Score=38.64 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=56.9
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------c-C-C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-G-L 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~-~-~ 247 (384)
+|.+||=.|++ +|.+..++..+ .....|+.+|.++++++.+.+.+...+. ++.....|..+.... . . +
T Consensus 7 kgK~alVTGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 47777766655 56677666654 3446899999999999999999888775 467778898864221 0 1 2
Q ss_pred CCCCEEEEcCCCCCC
Q 016730 248 NTVDRVLLDAPCSGT 262 (384)
Q Consensus 248 ~~fD~VllDaPCSg~ 262 (384)
+..|.++.++.....
T Consensus 85 g~idilvnnAG~~~~ 99 (259)
T d1xq1a_ 85 GKLDILINNLGAIRS 99 (259)
T ss_dssp TCCSEEEEECCC---
T ss_pred CCcccccccccccCC
Confidence 578999987764433
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.44 E-value=0.75 Score=39.80 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=56.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCC-ceEEE-EeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a-~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------- 245 (384)
|-.|.+|| +..|+||.+..++..+... ..|+. .+.+.+.++.+.+.+...|. ++..+..|..+.....
T Consensus 3 ~L~GK~al-ITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 3 PLAGKVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHH
Confidence 45688888 4556688888888766433 35664 56788889999999999987 4567789988642110
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
..+..|.++.++.
T Consensus 81 ~~g~idilinnag 93 (259)
T d1ja9a_ 81 HFGGLDFVMSNSG 93 (259)
T ss_dssp HHSCEEEEECCCC
T ss_pred HcCCCcEEEeccc
Confidence 1257898887664
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.22 E-value=1.3 Score=38.34 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=56.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.++|=.| |.+|.+..++..+. ....|+.+|.++++++.+.+.++..|.+ +..+..|.++..... ..+
T Consensus 10 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~-~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ-AFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCC-EEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 477777555 55667777777554 3458999999999999999999988864 566688998742210 125
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.++-
T Consensus 88 ~iDilvnnAG 97 (255)
T d1fmca_ 88 KVDILVNNAG 97 (255)
T ss_dssp SCCEEEECCC
T ss_pred CCCEeeeCCc
Confidence 7998887553
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.05 E-value=0.25 Score=40.91 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=38.8
Q ss_pred cCCCCCceEEEeccCCChH---HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEE
Q 016730 174 LAPQEKERVIDMAAAPGGK---TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgk---t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~ 233 (384)
..++||++||=..+|.|+. +..+|..++ .+|+++=-+.+..+...+.++.+|.+.+..
T Consensus 24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lGad~vi~ 84 (189)
T d1gu7a2 24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGATQVIT 84 (189)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCSEEEE
T ss_pred hCCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhccccEEEe
Confidence 4678999888775555543 446666664 477776555555666667778899886543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=89.64 E-value=0.57 Score=42.35 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=66.2
Q ss_pred eEEEeccCCChHHHHHHHHcc-CCceEEEEeCCH-----HHHHHHHHHHHHcCCceEEEEecCCCCcccc---cCCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKA-----SRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~-----~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~~~~fD 251 (384)
+|| +.-|+|..+.|+...+- .+-.|+++|... .+++.+...... .-.++.++.+|.++.... +.+..+|
T Consensus 3 ~vL-ITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 3 VAL-ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp EEE-EETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred EEE-EeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhh-cCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 344 44567999999887653 345899999743 344333332211 224688888998875432 2224689
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE-EeccCC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY-STCSIM 316 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY-sTCSi~ 316 (384)
.|+-=+-+++.+.--.+|+. ........-..+|+.|...- ++...++|| |||++.
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~-------~~~~Nv~gt~nllea~~~~~---~~~~~r~i~~SS~~vY 136 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEY-------TADVDAMGTLRLLEAIRFLG---LEKKTRFYQASTSELY 136 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHH-------HHHHHTHHHHHHHHHHHHTT---CTTTCEEEEEEEGGGG
T ss_pred EEEEeecccccchhhhCHHH-------HHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEchhhh
Confidence 99986665555543333322 22223334456777766542 245556776 777764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.44 E-value=2.3 Score=36.48 Aligned_cols=124 Identities=12% Similarity=0.132 Sum_probs=71.6
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHH-HHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~-~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.++|=.|++ +|.+..++..+ .....|+.+|.+.++++.+.+.+ +..|.+ +..+..|..+..... ..
T Consensus 4 ~gK~~lITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGS-RGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVE-TMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCC-EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCc-EEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46777766665 55666666644 34468999999999998877665 555654 666688988742110 12
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
++.|.++.+|- +....|- ...+.++..... .-...+.+.++..+.. +.+|.+|..+
T Consensus 82 g~iDiLVnnAG-----~~~~~~~--~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~Ii~i~ 141 (251)
T d1vl8a_ 82 GKLDTVVNAAG-----INRRHPA--EEFPLDEFRQVIEVNLFGTYYVCREAFSLLRE--SDNPSIINIG 141 (251)
T ss_dssp SCCCEEEECCC-----CCCCCCG--GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CSSCEEEEEC
T ss_pred CCCCEEEECCC-----CCCCCCh--hhCCHHHHHHHHHhhhhhhhhhhhhhhhcccc--cccccccccc
Confidence 57999988653 3222221 223444443322 2223344555555410 3456777654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.43 E-value=0.92 Score=39.57 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=57.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCccccc--------C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~~--------~ 246 (384)
.|.++|=.|+ .+|.+..++..+. ....|+.+|.++++++.+.+.++..|.. ++..+..|..+..... .
T Consensus 4 ~gK~alVTGa-s~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGS-SNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCc-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4667775555 5666777776543 3459999999999999999999888764 4778889988743210 1
Q ss_pred CCCCCEEEEcCC
Q 016730 247 LNTVDRVLLDAP 258 (384)
Q Consensus 247 ~~~fD~VllDaP 258 (384)
.+..|.++.++-
T Consensus 83 ~g~iDilvnnAG 94 (272)
T d1xkqa_ 83 FGKIDVLVNNAG 94 (272)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCceEEEeCCc
Confidence 257999988764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.30 E-value=1.6 Score=37.40 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=51.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~ 248 (384)
+|.++|=.|++ +|.+..++..+. ....|+.+|.++++++.+.+.+ +- +...+..|.++.... ...+
T Consensus 3 ~gK~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 3 EGKIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYL---GA-NGKGLMLNVTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---GG-GEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---CC-CCcEEEEEecCHHHhhhhhhhhhcccC
Confidence 46677766655 556777776543 3458999999999988877655 32 455667888864211 0126
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
+.|.++.+|..
T Consensus 78 ~iDilVnnAg~ 88 (243)
T d1q7ba_ 78 EVDILVNNAGI 88 (243)
T ss_dssp SCSEEEECCCC
T ss_pred Ccceehhhhhh
Confidence 89998887643
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=89.15 E-value=1.3 Score=38.17 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=54.3
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCC-HHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~-~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
+|..+|=.| |.+|.+..++..+ .....|+.+|.+ ++.++.+.+.+...+-.++.++..|..+..... ..
T Consensus 3 ~gK~alITG-as~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 3 KGKVAVVTG-STSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CcCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 477777444 5566777777654 344589999986 678888887775443335777789998743210 12
Q ss_pred CCCCEEEEcCCCC
Q 016730 248 NTVDRVLLDAPCS 260 (384)
Q Consensus 248 ~~fD~VllDaPCS 260 (384)
++.|.++.+|--.
T Consensus 82 G~iDiLVnnAG~~ 94 (260)
T d1x1ta1 82 GRIDILVNNAGIQ 94 (260)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCcEEEeecccc
Confidence 6799999887543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.10 E-value=2.1 Score=36.82 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+|..+|=.|+ .+|.+..++..+ .....|+.+|.++++++.+.+.+ +- +..++..|..+..... ..+
T Consensus 5 ~gK~alITGa-s~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g 79 (253)
T d1hxha_ 5 QGKVALVTGG-ASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GE-RSMFVRHDVSSEADWTLVMAAVQRRLG 79 (253)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CT-TEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CC-CeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4777775564 556677777654 34458999999998888776554 43 3556678888642110 126
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
..|.++.++.-...+-+ ...+.++..+.. .-...+.+.++..+ .+.||.+|..+
T Consensus 80 ~iDilVnnAG~~~~~~~-------~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m---~~~~G~Iv~is 137 (253)
T d1hxha_ 80 TLNVLVNNAGILLPGDM-------ETGRLEDFSRLLKINTESVFIGCQQGIAAM---KETGGSIINMA 137 (253)
T ss_dssp SCCEEEECCCCCCCBCT-------TTCCHHHHHHHHHHHTHHHHHHHHHHHHHH---TTTCEEEEEEC
T ss_pred CCCeEEecccccCCCCc-------ccCCHHHHHHHHHHhhhHHHHHHHHHHHHH---HhcCCceeccc
Confidence 78999987642222211 222344433322 22233455666655 25689988765
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=88.78 E-value=1.6 Score=37.86 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|..||=.|++ +|.+..++..+ .....|+.+|.++++++.+.+.+...+ .+.++..|..+..... ..+
T Consensus 5 ~gKvalITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 5 QDKVAIITGGA-GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 47778877765 55677777654 444689999999999988887775433 3666778988742110 125
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.++-
T Consensus 82 ~iD~lVnnAG 91 (268)
T d2bgka1 82 KLDIMFGNVG 91 (268)
T ss_dssp CCCEEEECCC
T ss_pred Ccceeccccc
Confidence 7999988663
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.69 E-value=1.7 Score=37.56 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCccccc--------C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELPKVL--------G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~~~~--------~ 246 (384)
.|..+|=.|+ .+|.+..++..+ .....|+.+|.++++++.+.+.+...|.. ++.++..|..+..... .
T Consensus 4 ~gKvalVTGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGS-SNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCc-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3666665554 466777777654 44468999999999999999999988764 4788889998742110 1
Q ss_pred CCCCCEEEEcC
Q 016730 247 LNTVDRVLLDA 257 (384)
Q Consensus 247 ~~~fD~VllDa 257 (384)
.+..|.++.++
T Consensus 83 ~g~iDilvnnA 93 (264)
T d1spxa_ 83 FGKLDILVNNA 93 (264)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEeeccc
Confidence 26799888765
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.36 E-value=1.2 Score=38.20 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=54.6
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.++|=.|++ +|.+..++..+ .....|+.+|.++++++.+.+.+ + .++.++..|..+..... ..+
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 5 TGKVALVSGGA-RGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---A-DAARYVHLDVTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---h-CcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 46777766655 55677676644 34468999999999887776654 3 34667788988743210 125
Q ss_pred CCCEEEEcCCCCCCCc
Q 016730 249 TVDRVLLDAPCSGTGV 264 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~ 264 (384)
..|.++.+|.....+-
T Consensus 80 ~idilinnAG~~~~~~ 95 (244)
T d1nffa_ 80 GLHVLVNNAGILNIGT 95 (244)
T ss_dssp CCCEEEECCCCCCCBC
T ss_pred CCeEEEECCcccCCCc
Confidence 7999998776544443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.30 E-value=2.2 Score=36.38 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=50.1
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc----cCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~----~~~~~fD~ 252 (384)
.|.++|=.|++ +|.+..++..+ .....|+.+|.+++.++.+.+.+ .++..+..|..+.... ...++.|.
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 4 SGLRALVTGAG-KGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 47788866655 55677777654 44469999999998887776543 2455667888764221 12268999
Q ss_pred EEEcCC
Q 016730 253 VLLDAP 258 (384)
Q Consensus 253 VllDaP 258 (384)
++.+|-
T Consensus 78 lVnnAg 83 (242)
T d1cyda_ 78 LVNNAA 83 (242)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 888764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.95 E-value=3.4 Score=35.76 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=54.2
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~ 248 (384)
.|.++|=.|| +||.+..++..+ ....+|+.+|.+..+++.+.+.+....-..+.++..|..+.... ...+
T Consensus 24 ~gK~alITGa-s~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 102 (294)
T d1w6ua_ 24 QGKVAFITGG-GTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG 102 (294)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence 4777886665 466777777654 34459999999999998888776543333566777888875321 1236
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++..+-
T Consensus 103 ~iDilvnnAg 112 (294)
T d1w6ua_ 103 HPNIVINNAA 112 (294)
T ss_dssp SCSEEEECCC
T ss_pred ccchhhhhhh
Confidence 7998887654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=87.86 E-value=2.1 Score=36.93 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=55.3
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|..+|=.|++ +|.+..++..+ .....|+.+|.++++++.+.+.+...+.. ++..+..|..+..... ..
T Consensus 3 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGG-SGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 36677766665 45566666544 34468999999999999988887666543 5777789988753210 12
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+..|.++.++-.
T Consensus 82 G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 82 GRIDGFFNNAGI 93 (258)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 679999887653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.70 E-value=0.1 Score=44.91 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=51.6
Q ss_pred EEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 233 ~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+.++|..+.-..++++++|.|+.|||.. +|. .+ +. .............+.+..+.+.| +|||.++...
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~-~~~--~~----~d-~~~~~~~y~~~~~~~~~e~~rvL----k~~g~~~~~~ 74 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYN-LSK--AD----WD-SFDSHNEFLAFTYRWIDKVLDKL----DKDGSLYIFN 74 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCS-SCS--SG----GG-CCSSHHHHHHHHHHHHHHHHHHE----EEEEEEEEEE
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCC-CCc--Cc----Cc-CCCCHHHHHHHHHHHHHHhhhcc----ccCccccccc
Confidence 5678887764455668999999999973 221 11 10 11123344555667888888886 9999876432
Q ss_pred ccCCccccHHHHHHHHhcCCCEEe
Q 016730 313 CSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 313 CSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
. ..+..-+...+...++.+.
T Consensus 75 ---~-~~~~~~~~~~~~~~g~~~~ 94 (256)
T d1g60a_ 75 ---T-PFNCAFICQYLVSKGMIFQ 94 (256)
T ss_dssp ---C-HHHHHHHHHHHHHTTCEEE
T ss_pred ---C-chhhhhhhhhhhcccceee
Confidence 1 2333334444455565543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=3.1 Score=36.56 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCccccc-------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVL------- 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~------- 245 (384)
+|..+|=.| |.+|.+..++..+ .....|+.+|.+.++++.+.+.+.... -.++..+..|..+.....
T Consensus 11 ~gKvalITG-as~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 11 QGQVAIVTG-GATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 577888555 5556777777654 444689999999999998888776532 124777789998753210
Q ss_pred -CCCCCCEEEEcCC
Q 016730 246 -GLNTVDRVLLDAP 258 (384)
Q Consensus 246 -~~~~fD~VllDaP 258 (384)
..+..|.++.++.
T Consensus 90 ~~~G~iDiLVnnAg 103 (297)
T d1yxma1 90 DTFGKINFLVNNGG 103 (297)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHhCCeEEEEeecc
Confidence 1257999888764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.26 E-value=6.6 Score=33.52 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=73.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC-HHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~-~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.|| ++|.+..++..+. ....|+..|.+ .+.++.+.+.++..|.+ +.+...|..+..... ..
T Consensus 17 ~gK~~lITGa-s~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~-~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 17 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSD-AACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC-EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCc-eeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 4777776665 5566777776553 33488888886 67888888888888864 666678888742110 12
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+..|.++..+.....+-+....+-.|. ..+.....-...+.+.+...+ +.+|.++..+
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~---~~~~~nl~~~~~~~~~~~~~m----~~~g~~i~i~ 152 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFD---RVFTINTRGQFFVAREAYKHL----EIGGRLILMG 152 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHH---HHHHHHTHHHHHHHHHHHHHS----CTTCEEEEEC
T ss_pred CCCCccccccccchhhhhhhhhhhHHH---HHhhhccceeeeecccccccc----cccccccccc
Confidence 578999887765444433222222211 111222233444566666665 5556555443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.63 E-value=1.3 Score=37.67 Aligned_cols=128 Identities=14% Similarity=0.068 Sum_probs=68.7
Q ss_pred CCceEEEeccCCC-hHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc--------ccCC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK--------VLGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~--------~~~~ 247 (384)
.|.+||=.|++.| |.+..++..+ .....|+..+.+++..+.+.+.....|-. .....|...... ....
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSD--IVLQCDVAEDASIDTMFAELGKVW 81 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCc--ceeecccchHHHHHHHHHHhhhcc
Confidence 5788888887774 5555555544 34468999999988888887777766643 233445443211 1122
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHH----HHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i----~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
...|.++..+.-+..+.+...+.. ....+.. .........+++.+...+ ++|+.+++.+.
T Consensus 82 ~~~d~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ii~iss 145 (258)
T d1qsga_ 82 PKFDGFVHSIGFAPGDQLDGDYVN--AVTREGFKIAHDISSYSFVAMAKACRSML----NPGSALLTLSY 145 (258)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHH--HCCHHHHHHHHHHHTHHHHHHHHHHGGGE----EEEEEEEEEEC
T ss_pred cccceEEEeecccccccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcEEEEecc
Confidence 567777766533222222222211 1122211 122233334445555553 78888887654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=85.63 E-value=3 Score=34.96 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=69.2
Q ss_pred eEEEeccCCC-hHHHHHHHHcc------CCceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-------
Q 016730 181 RVIDMAAAPG-GKTTYIAALMK------NTGLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL------- 245 (384)
Q Consensus 181 ~VLD~cagpG-gkt~~la~~~~------~~g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~------- 245 (384)
+|+=++--+| |||+.++.+.. .+-.+++.|. .....+.++...+.+|+.-.. ..+..++....
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~--~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ--GPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEEC--CCTTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEe--ccCCccHHHHHHHHHHHH
Confidence 4444443334 58888766531 2234677775 466789999999999986222 23333322110
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
....+|+||+|.| |.... ....+.++..+.+. +..+ .. ..|.-.++....+...++-.+...
T Consensus 85 ~~~~~d~ilIDTa----Gr~~~--------d~~l~~el~~~~~~-~~~~-~~----~~p~~~~LVl~a~~~~~~~~~~~~ 146 (207)
T d1okkd2 85 KARGYDLLFVDTA----GRLHT--------KHNLMEELKKVKRA-IAKA-DP----EEPKEVWLVLDAVTGQNGLEQAKK 146 (207)
T ss_dssp HHHTCSEEEECCC----CCCTT--------CHHHHHHHHHHHHH-HHHH-CT----TCCSEEEEEEETTBCTHHHHHHHH
T ss_pred HHCCCCEEEcCcc----ccchh--------hHHHHHHHHHHHHH-hhhc-cc----CCCceEEEEeecccCchHHHHHHH
Confidence 1146899999988 43222 33334444333221 1111 11 156666666666666666666655
Q ss_pred HHH
Q 016730 326 YAL 328 (384)
Q Consensus 326 ~~l 328 (384)
++-
T Consensus 147 ~~~ 149 (207)
T d1okkd2 147 FHE 149 (207)
T ss_dssp HHH
T ss_pred hhh
Confidence 544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.62 E-value=3.6 Score=34.95 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=50.5
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc----cCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----LGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~----~~~~~fD~ 252 (384)
.|.+||=.|++ +|.+..+++.+ .....|+.+|.++++++.+.+.+ .++..+..|..+.... ...++.|.
T Consensus 6 ~GK~~lITGas-~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 6 AGRRVLVTGAG-KGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 58888877765 55677777655 33458999999999887776543 2455667888764211 12368998
Q ss_pred EEEcCC
Q 016730 253 VLLDAP 258 (384)
Q Consensus 253 VllDaP 258 (384)
++.++.
T Consensus 80 lVnnAg 85 (244)
T d1pr9a_ 80 LVNNAA 85 (244)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 887653
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=85.55 E-value=4.7 Score=34.35 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=55.2
Q ss_pred CceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
|..+|=.| |.+|.+..++..+ .....|+.+|.++++++.+.+.++..|.+ +..+..|.++..... ..++
T Consensus 2 gKValITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~-~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE-ADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC-EEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 44445455 4566677777654 34458999999999999999999988864 666788988753210 1267
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
.|.++.+|-
T Consensus 80 iDilVnnAG 88 (257)
T d2rhca1 80 VDVLVNNAG 88 (257)
T ss_dssp CSEEEECCC
T ss_pred CCEEEeccc
Confidence 999988764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=85.01 E-value=2.5 Score=35.90 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=51.2
Q ss_pred EEEeccCCChHHHHHHHHccCCc--------eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------c
Q 016730 182 VIDMAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------L 245 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~~g--------~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~ 245 (384)
||=.|| ++|.+..++..+-..| .|+..+.++++++.+.+.++..|. .+.++..|.++.... .
T Consensus 4 vlITGa-s~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 4 LLITGA-GKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEETT-TSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEccC-CCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence 444454 4556777766543222 389999999999999999988875 466678899875321 0
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
..+..|.++.++-
T Consensus 82 ~~g~iDilvnnAg 94 (240)
T d2bd0a1 82 RYGHIDCLVNNAG 94 (240)
T ss_dssp HTSCCSEEEECCC
T ss_pred HcCCcceeecccc
Confidence 2268998887664
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.95 E-value=7.9 Score=32.71 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=44.4
Q ss_pred CCceEEEeccCCChHHHHHHHHc----cCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM----KNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNEL 241 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~----~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~ 241 (384)
.|..+|=.|++ +|.+..++..+ .....|+.++.++++++.+.+.+...+. ..+..+..|..+.
T Consensus 5 ~gKvalITGas-~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 5 GCAVCVLTGAS-RGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp BSEEEEESSCS-SHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence 35555644554 45677666644 2345899999999999999988876543 3577888998874
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.78 E-value=3.7 Score=35.11 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=50.6
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+|.++|=.|++ +|.+..++..+ .....|+.+|.+.++++.+.+. +|. ++..+..|.++..... ..+
T Consensus 4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~~~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 4 DGKTALITGSA-RGIGRAFAEAYVREGARVAIADINLEAARATAAE---IGP-AACAIALDVTDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TTEEEEEETCS-SHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH---HCT-TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---hCC-ceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 47777766655 55677777654 3345899999999887776554 454 4666688988753211 125
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.++.
T Consensus 79 ~iDilVnnAg 88 (256)
T d1k2wa_ 79 SIDILVNNAA 88 (256)
T ss_dssp CCCEEEECCC
T ss_pred CccEEEeecc
Confidence 7998888664
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=1.6 Score=35.56 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+++.|| +-+|.||.+.. |+..++ .+|+++..++++.+.++ .+|.+.+ ++.+-...........+|.|
T Consensus 31 ~~~~vl-V~gasGGVG~~aiQlAk~~G--a~Via~~~~~~k~~~~~----~lGad~v--i~~~~~~~~~~l~~~~~~~v- 100 (177)
T d1o89a2 31 QDGEIV-VTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLK----SLGASRV--LPRDEFAESRPLEKQVWAGA- 100 (177)
T ss_dssp GGCEEE-ESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHH----HHTEEEE--EEGGGSSSCCSSCCCCEEEE-
T ss_pred CCCcEE-EEEccccchHHHHHHHHHcC--CCeEEEecchhHHHHHH----hhccccc--cccccHHHHHHHHhhcCCee-
Confidence 345777 45566766554 555543 58999998988866554 5677644 33433333333334567876
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+|.= | ...+...++.+ +++|++|..-
T Consensus 101 vD~V----g------------------------g~~~~~~l~~l----~~~Griv~~G 126 (177)
T d1o89a2 101 IDTV----G------------------------DKVLAKVLAQM----NYGGCVAACG 126 (177)
T ss_dssp EESS----C------------------------HHHHHHHHHTE----EEEEEEEECC
T ss_pred EEEc----c------------------------hHHHHHHHHHh----ccccceEeec
Confidence 4632 1 12356777776 9999998643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.74 E-value=4.7 Score=34.60 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=53.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC-HHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~-~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|..+|=.|++ +|.+..++..+. ....|+.++.+ ++.++.+.+.++..|.+ +..+..|..+..... ..
T Consensus 6 ~gK~alITGas-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~-~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-AIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCE-EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCc-EEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47777755555 556777776543 34589999986 56888888999888864 566688998742210 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
++.|.++.++.
T Consensus 84 G~iDiLVnnAG 94 (261)
T d1geea_ 84 GKLDVMINNAG 94 (261)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEeeccce
Confidence 57898887653
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.47 E-value=0.94 Score=37.13 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=58.7
Q ss_pred cCCCCC--ceEEEec--cCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccC
Q 016730 174 LAPQEK--ERVIDMA--AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLG 246 (384)
Q Consensus 174 L~~~~g--~~VLD~c--agpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~ 246 (384)
.++++| +.||=.+ .|-|..+.++|..++. ..|+++..++++...+. +.+|.+.+ ++..-.++.. ...
T Consensus 24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~---~~~gad~v--i~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLT---SELGFDAA--VNYKTGNVAEQLREAC 97 (187)
T ss_dssp SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHH---HHSCCSEE--EETTSSCHHHHHHHHC
T ss_pred hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhh---hcccceEE--eeccchhHHHHHHHHh
Confidence 346666 7788644 4567778888887753 46777777766555442 34676533 3332222211 112
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
...+|+|+ |+- | .+.+..+++.+ ++||+++..
T Consensus 98 ~~GvDvv~-D~v--G--------------------------g~~~~~~~~~l----~~~G~iv~~ 129 (187)
T d1vj1a2 98 PGGVDVYF-DNV--G--------------------------GDISNTVISQM----NENSHIILC 129 (187)
T ss_dssp TTCEEEEE-ESS--C--------------------------HHHHHHHHTTE----EEEEEEEEC
T ss_pred ccCceEEE-ecC--C--------------------------chhHHHHhhhc----cccccEEEe
Confidence 35799986 532 1 12456777876 999999864
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.61 E-value=2.3 Score=36.66 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=50.0
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.++|=.|++. |.+..++..+ .....|+.+|.++++++.+.+. +| .++.++..|..+..... ..+
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (254)
T d1hdca_ 4 SGKTVIITGGAR-GLGAEAARQAVAAGARVVLADVLDEEGAATARE---LG-DAARYQHLDVTIEEDWQRVVAYAREEFG 78 (254)
T ss_dssp CCSEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---TG-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCcCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---hC-CceEEEEcccCCHHHHHHHHHHHHHHcC
Confidence 477788777665 4566666644 3445899999999887766544 44 34677789988642210 125
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
+.|.++.+|-
T Consensus 79 ~iDilVnnAg 88 (254)
T d1hdca_ 79 SVDGLVNNAG 88 (254)
T ss_dssp CCCEEEECCC
T ss_pred CccEEEecCc
Confidence 7998887653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.51 E-value=2.9 Score=35.81 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=51.5
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.++|=.|++ +|.+..++..+ .....|+.+|.+++.++.+.+.+ .++.++..|.++..... ..+
T Consensus 5 ~GK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 5 AGKVVVVTGGG-RGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence 47778866765 45667676654 34468999999999888776543 34667788988743210 126
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
+.|.++.+|-.
T Consensus 79 ~iDilVnnAG~ 89 (250)
T d1ydea1 79 RLDCVVNNAGH 89 (250)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEecccc
Confidence 79999987753
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.52 E-value=2.9 Score=35.85 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHH-HHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~-~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|.+||=.|+ .+|.+..++..+ .....|+.+|.+.+.++.+.+.+ +..|. ++..+..|..+.... ...
T Consensus 8 ~gK~alITGa-s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 8 VNKTIIVTGG-NRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDADL 85 (260)
T ss_dssp TTEEEEEETT-TSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4777886675 456777777654 34458999999988887776665 45565 466678898875321 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.++.
T Consensus 86 g~iDilVnnAg 96 (260)
T d1h5qa_ 86 GPISGLIANAG 96 (260)
T ss_dssp CSEEEEEECCC
T ss_pred CCCcEeccccc
Confidence 68998887654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=82.42 E-value=4.1 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 188 APGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 188 gpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
|.|..+..+|..+. ..-.|++.|.++++++.+++ .|+-.... .+. ... ...|.|++-.|
T Consensus 7 G~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~~~~--~~~----~~~--~~~DiIilavp 66 (165)
T d2f1ka2 7 GLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVDEAG--QDL----SLL--QTAKIIFLCTP 66 (165)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCSEEE--SCG----GGG--TTCSEEEECSC
T ss_pred eecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccceee--eec----ccc--cccccccccCc
Confidence 45655555555443 33589999999988776643 45422111 111 112 56899999766
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=82.04 E-value=5.7 Score=33.59 Aligned_cols=118 Identities=16% Similarity=0.096 Sum_probs=68.1
Q ss_pred eccCCChHHHHHHHHccCC-ceEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCCEEE
Q 016730 185 MAAAPGGKTTYIAALMKNT-GLIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDRVL 254 (384)
Q Consensus 185 ~cagpGgkt~~la~~~~~~-g~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD~Vl 254 (384)
+..|++|.+..++..+-.. ..|+..|. +++.++.+.+.++..|. ++.++..|..+..... ..++.|.++
T Consensus 6 ITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV 84 (244)
T d1edoa_ 6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGTIDVVV 84 (244)
T ss_dssp ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSCCSEEE
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCCCCccc
Confidence 4455667787777755433 47776664 78889999999988886 4666788998753210 126899888
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|. +....|- ...+.++..+.. .-...+.+.++..+.. +.+|++|..+
T Consensus 85 nnAg-----~~~~~~~--~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~IVnis 137 (244)
T d1edoa_ 85 NNAG-----ITRDTLL--IRMKKSQWDEVIDLNLTGVFLCTQAATKIMMK--KRKGRIINIA 137 (244)
T ss_dssp ECCC-----CCCCCCG--GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEEC
T ss_pred cccc-----cccccch--hccchHHHHHHHhhhhhhHHHHHHHHHHHHHH--cCCcEEEEEc
Confidence 7663 2222221 122333333221 2223344555554311 4578888654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.48 E-value=7.3 Score=32.81 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=48.2
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.++|=.|++ +|.+..+++.+ .....|+.+|.++++++.+.+. ++ ...+..|..+..... ..+
T Consensus 4 ~gK~~lITGas-~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~---~~---~~~~~~Dv~~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 4 KDKAVLITGAA-HGIGRATLELFAKEGARLVACDIEEGPLREAAEA---VG---AHPVVMDVADPASVERGFAEALAHLG 76 (242)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---TT---CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---cC---CeEEEEecCCHHHHHHHHHHHHHhcC
Confidence 46677766665 45677777654 3446999999999888777553 33 345578888743211 115
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
+.|.++.+|-
T Consensus 77 ~iDilVnnAG 86 (242)
T d1ulsa_ 77 RLDGVVHYAG 86 (242)
T ss_dssp SCCEEEECCC
T ss_pred CceEEEECCc
Confidence 7998887663
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=80.40 E-value=1.7 Score=37.85 Aligned_cols=118 Identities=14% Similarity=0.032 Sum_probs=66.4
Q ss_pred eEEEeccCCChHHHHHHHHc-cCCceEEEEeC-CHH-HHHHHHHHHHHcCCceEEEEecCCCCcccc---cCCCCCCEEE
Q 016730 181 RVIDMAAAPGGKTTYIAALM-KNTGLIYANEM-KAS-RLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLNTVDRVL 254 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~-~~~-rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~~~~fD~Vl 254 (384)
+|| +.-|+|..+.|+.+.+ ..+-.|+++|. +.. ....+. .+. ...++.++.+|..+.... +.+.++|.|+
T Consensus 2 KIL-VTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~-~~~--~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi 77 (338)
T d1orra_ 2 KLL-ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLH-WLS--SLGNFEFVHGDIRNKNDVTRLITKYMPDSCF 77 (338)
T ss_dssp EEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHH-HHH--TTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred EEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHH-Hhh--ccCCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence 577 6668899999988755 44458999983 222 222211 122 235678889999875322 2224689998
Q ss_pred EcCCCCCCCcCCCCchhhccCCHH-HHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLE-DIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~-~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
-=|-.+.... ...++. .......--+.+|+.+... ...-.+++||++.
T Consensus 78 h~aa~~~~~~--------~~~~~~~~~~~Nv~gt~nll~~~~~~-----~~~~~i~~sS~~~ 126 (338)
T d1orra_ 78 HLAGQVAMTT--------SIDNPCMDFEINVGGTLNLLEAVRQY-----NSNCNIIYSSTNK 126 (338)
T ss_dssp ECCCCCCHHH--------HHHCHHHHHHHHHHHHHHHHHHHHHH-----CTTCEEEEEEEGG
T ss_pred eecccccccc--------cccChHHHHHHHHHHHHHHHHhhhcc-----ccccccccccccc
Confidence 7443211110 011212 2222334445677766664 6667888888763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.37 E-value=1.3 Score=33.86 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=45.5
Q ss_pred eEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cCCCCCCEEEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTVDRVLL 255 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~~~~fD~Vll 255 (384)
+|+=+| -|..+..+++.+... -.|+.+|.|+++++.+.+. +| +.++.+|+.+...+ ..-...|.+++
T Consensus 2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~---~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID---ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS---SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh---hhhccCcccchhhhhhcChhhhhhhcc
Confidence 455444 477778888765433 4799999999999887653 33 35667999875322 12257888886
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=80.24 E-value=17 Score=31.44 Aligned_cols=82 Identities=13% Similarity=-0.030 Sum_probs=54.0
Q ss_pred CCCCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccC-CCCCCE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLG-LNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~-~~~fD~ 252 (384)
.++|.+||=.| |+|..+.+++..+ ..+-.|++...+..+...++........ ....++.+|..+...+.. -...|.
T Consensus 8 ~~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 8 LPEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 45789999655 5599999998744 4445899988888888777765554443 344556678776432211 146788
Q ss_pred EEEcCC
Q 016730 253 VLLDAP 258 (384)
Q Consensus 253 VllDaP 258 (384)
|+.-+-
T Consensus 87 v~~~a~ 92 (342)
T d1y1pa1 87 VAHIAS 92 (342)
T ss_dssp EEECCC
T ss_pred hhhhcc
Confidence 887543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.11 E-value=2.5 Score=36.02 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=49.5
Q ss_pred CCceEEEeccCCC-hHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.++|=.||+.+ |.+..++..+ .....|+..+.+++..+.+.+.....+ +..++..|..+..... ..
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEAF 84 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHHhc
Confidence 5888998888763 4555555544 334588888998877776666665554 3455678887642110 12
Q ss_pred CCCCEEEEcC
Q 016730 248 NTVDRVLLDA 257 (384)
Q Consensus 248 ~~fD~VllDa 257 (384)
++.|.++-++
T Consensus 85 g~iDilVnna 94 (256)
T d1ulua_ 85 GGLDYLVHAI 94 (256)
T ss_dssp SSEEEEEECC
T ss_pred CCceEEEecc
Confidence 5788777654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.05 E-value=1.7 Score=39.20 Aligned_cols=126 Identities=11% Similarity=-0.047 Sum_probs=66.1
Q ss_pred CceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHH----------------HHHHHcCCceEEEEecCCCCc
Q 016730 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLT----------------ANLHRMGVTNTIVCNYDGNEL 241 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~----------------~n~~r~g~~~v~~~~~D~~~~ 241 (384)
|++||=. -|+|..+.+++..+ ..+-.|+++|.-..+..... .......-.++.++.+|.++.
T Consensus 1 g~kILVT-GatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVI-GGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 6788844 46999999887755 34458999995433322221 112222235688889999875
Q ss_pred cc---ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 242 PK---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 242 ~~---~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.. .+.+..+|.|+-=|-.+..+.-..++.- ..........--..+|+.|.+. ...-.++|++.+
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~----~~~~~~~Nv~gt~nll~~~~~~-----~~~~~~i~~ss~ 146 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSR----AVYTQHNNVIGTLNVLFAIKEF-----GEECHLVKLGTM 146 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHH----HHHHHHHHHHHHHHHHHHHHHH-----CTTCEEEEECCG
T ss_pred HHHHHHHHhhcchheeccccccccccccccccc----cccccccccccccHHHHHHHHh-----ccccceeecccc
Confidence 32 2222368999865533322211111110 0011122223334566666654 555677776643
|