Citrus Sinensis ID: 017009

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASDAN
cccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEcccccccccccccccEEEccccccccccccccccEEEEccccccccccccccccEEEEEEccccccccccccccccEEcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccc
cccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEccccEEEEEcccccEEEEEEccccccccEEEEEEEEEcccccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEEccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccEEEEEEcccccccccccccEEccHHHHcccccHHHHHHHHHHHHHHHHHHHccc
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELtqllsgpydkegavisitagaggtdaQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYgylsgekgthrivrqspfnakglrqtsfsgaevmpllpeesmdvqipeedleisfsraggkggqnvnKVETAVRIthiptgvtvrcTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQqirnyvfhpyklvkdvrtghetsdivsvmdgeLEPFIKSYLKYKYSmslsasdan
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKInlltdfktkmdDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITagaggtdaqDWADMLLRMYVRwgekqryktrvvekslgeeagiksavievEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISfsraggkggqnvnkvetavrithiptgvtvrcteERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTghetsdivsvmdgeLEPFIKSYLKYKYSMSLSASDAN
MQDFYNLRKDVEAASDRVEEIRASaglqqlekelaelemkaaDSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIksylkykysmslsasDAN
*******************************************************TLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVR***************************************************VNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYS*********
*QDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAE************DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV********************EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSY***************
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSM********
*QDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLS*****
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MQDFYNLRKDVEAASDRVExxxxxxxxxxxxxxxxxxxxxAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLxxxxxxxxxxxxxxxxxxxxxQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASDAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query379 2.2.26 [Sep-21-2011]
P74476372 Peptide chain release fac N/A no 0.963 0.981 0.574 1e-120
B7K0A6365 Peptide chain release fac yes no 0.944 0.980 0.588 1e-115
Q7U3W6374 Peptide chain release fac yes no 0.952 0.965 0.571 1e-115
Q0TNE1362 Peptide chain release fac yes no 0.912 0.955 0.468 4e-90
O67695373 Peptide chain release fac yes no 0.944 0.959 0.461 2e-89
Q0SR12364 Peptide chain release fac yes no 0.912 0.950 0.465 2e-89
B8G607367 Peptide chain release fac yes no 0.941 0.972 0.447 6e-87
C4L5K9366 Peptide chain release fac yes no 0.944 0.978 0.434 8e-86
A8M3R1373 Peptide chain release fac yes no 0.970 0.986 0.434 4e-85
P28367366 Peptide chain release fac yes no 0.952 0.986 0.431 7e-85
>sp|P74476|RF2_SYNY3 Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prfB PE=3 SV=2 Back     alignment and function desciption
 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/367 (57%), Positives = 275/367 (74%), Gaps = 2/367 (0%)

Query: 1   MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL 60
           + +  +L++++E  S R+ + +    L  L+ ++ +LE  AA   FWD+  +AQ+ LQ L
Sbjct: 2   ITELTDLKRNLELISSRLGQTQDYLDLPGLKAKVQDLEQCAAQPDFWDDTDQAQQILQTL 61

Query: 61  TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120
            + K ++     ++ +  D+  IV+L E  D  D  LL EA + +++L K LD++EL QL
Sbjct: 62  NETKSQLEQWGIWQQQWQDSQAIVELLELED--DQALLTEAETTLEQLQKELDRWELQQL 119

Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKS 180
           LSGPYD +GA ++I AGAGGTDAQDWA+MLLRMY RW EKQ YK  + E S G+EAG+KS
Sbjct: 120 LSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVHLAEISEGDEAGLKS 179

Query: 181 AVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEE 240
             +E+EGRYAYGYL  EKGTHR+VR SPFNA G RQTSF+G EVMPLL EE++ + IP++
Sbjct: 180 VTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTSFAGVEVMPLLGEEAISLDIPDK 239

Query: 241 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
           DL+IS SRAGGKGGQNVNKVETAVRI H+PTG+ VRCT+ERSQL NK KAL+ LKAKLL+
Sbjct: 240 DLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCTQERSQLQNKEKALAILKAKLLI 299

Query: 301 IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 360
           + EEQRA  I +IRGD V+A WG QIRNYVFHPY+LVKD+RT  ET+D+  VMDGEL  F
Sbjct: 300 VLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQLVKDLRTNVETTDVGGVMDGELSDF 359

Query: 361 IKSYLKY 367
           I++YL++
Sbjct: 360 IEAYLRH 366
Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
>sp|B7K0A6|RF2_CYAP8 Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q7U3W6|RF2_SYNPX Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q0TNE1|RF2_CLOP1 Peptide chain release factor 2 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2 Back     alignment and function description
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q0SR12|RF2_CLOPS Peptide chain release factor 2 OS=Clostridium perfringens (strain SM101 / Type A) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|B8G607|RF2_CHLAD Peptide chain release factor 2 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|C4L5K9|RF2_EXISA Peptide chain release factor 2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|A8M3R1|RF2_SALAI Peptide chain release factor 2 OS=Salinispora arenicola (strain CNS-205) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|P28367|RF2_BACSU Peptide chain release factor 2 OS=Bacillus subtilis (strain 168) GN=prfB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
297735238451 unnamed protein product [Vitis vinifera] 0.986 0.829 0.919 0.0
225430898454 PREDICTED: peptide chain release factor 0.986 0.823 0.919 0.0
255547508458 peptide chain release factor, putative [ 0.992 0.820 0.893 0.0
224101237379 predicted protein [Populus trichocarpa] 1.0 1.0 0.878 0.0
46406291453 putative translation releasing factor 2 0.992 0.830 0.867 0.0
356531868456 PREDICTED: peptide chain release factor 1.0 0.831 0.860 0.0
357507841475 Peptide chain release factor [Medicago t 1.0 0.797 0.846 0.0
297805172453 HCF109 [Arabidopsis lyrata subsp. lyrata 1.0 0.836 0.815 0.0
30692908456 high chlorophyll fluorescent 109 protein 1.0 0.831 0.807 0.0
30692913455 high chlorophyll fluorescent 109 protein 1.0 0.832 0.807 0.0
>gi|297735238|emb|CBI17600.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/374 (91%), Positives = 362/374 (96%)

Query: 1   MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL 60
           MQDFY LR+DVEA S+R EEIRASAGLQQLE+ELA LEMKAADSSFWD+RA+AQETL AL
Sbjct: 75  MQDFYTLRRDVEAISERAEEIRASAGLQQLEEELAALEMKAADSSFWDDRAKAQETLLAL 134

Query: 61  TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120
           TDVKDKI LLTDFKT+++DA TIVKLTEEMDS D GLLEEAA+IIKELNKALD+FELTQL
Sbjct: 135 TDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAANIIKELNKALDRFELTQL 194

Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKS 180
           LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKS+GEEAGIKS
Sbjct: 195 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSMGEEAGIKS 254

Query: 181 AVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEE 240
           A IE+EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSG EVMPLLPEESMDV+IPEE
Sbjct: 255 ATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 314

Query: 241 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
           DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV
Sbjct: 315 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 374

Query: 301 IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 360
           IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDI SVMDGELEPF
Sbjct: 375 IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDITSVMDGELEPF 434

Query: 361 IKSYLKYKYSMSLS 374
           IK+YLK+K+SM+LS
Sbjct: 435 IKAYLKFKFSMTLS 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430898|ref|XP_002276037.1| PREDICTED: peptide chain release factor 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547508|ref|XP_002514811.1| peptide chain release factor, putative [Ricinus communis] gi|223545862|gb|EEF47365.1| peptide chain release factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224101237|ref|XP_002312196.1| predicted protein [Populus trichocarpa] gi|222852016|gb|EEE89563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|46406291|emb|CAG25777.1| putative translation releasing factor 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356531868|ref|XP_003534498.1| PREDICTED: peptide chain release factor 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357507841|ref|XP_003624209.1| Peptide chain release factor [Medicago truncatula] gi|355499224|gb|AES80427.1| Peptide chain release factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|297805172|ref|XP_002870470.1| HCF109 [Arabidopsis lyrata subsp. lyrata] gi|297316306|gb|EFH46729.1| HCF109 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30692908|ref|NP_851096.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana] gi|8777302|dbj|BAA96892.1| translation releasing factor RF-2 [Arabidopsis thaliana] gi|15810391|gb|AAL07083.1| putative translation releasing factor RF-2 [Arabidopsis thaliana] gi|21436317|gb|AAM51328.1| putative translation releasing factor RF-2 [Arabidopsis thaliana] gi|21536944|gb|AAM61285.1| translation releasing factor RF-2 [Arabidopsis thaliana] gi|332006668|gb|AED94051.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30692913|ref|NP_851097.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana] gi|13568392|emb|CAC36322.1| translation releasing factor2 [Arabidopsis thaliana] gi|332006670|gb|AED94053.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
TAIR|locus:2158936456 HCF109 "high chlorophyll fluor 0.952 0.791 0.797 3.6e-153
TIGR_CMR|CHY_0163371 CHY_0163 "peptide chain releas 0.931 0.951 0.450 3.6e-82
TIGR_CMR|GSU_2278372 GSU_2278 "peptide chain releas 0.918 0.935 0.413 3.2e-72
UNIPROTKB|Q3Z8Y6362 prfB "Peptide chain release fa 0.820 0.859 0.443 1.4e-69
TIGR_CMR|DET_0570362 DET_0570 "peptide chain releas 0.820 0.859 0.443 1.4e-69
UNIPROTKB|P66026371 prfB "Peptide chain release fa 0.836 0.854 0.418 1.3e-68
TIGR_CMR|SPO_2585375 SPO_2585 "peptide chain releas 0.831 0.84 0.410 6e-64
UNIPROTKB|P07012365 prfB [Escherichia coli K-12 (t 0.820 0.852 0.412 6.9e-63
TIGR_CMR|ECH_0705366 ECH_0705 "peptide chain releas 0.828 0.857 0.401 9e-61
TIGR_CMR|NSE_0604365 NSE_0604 "peptide chain releas 0.828 0.860 0.390 3.1e-60
TAIR|locus:2158936 HCF109 "high chlorophyll fluorescent 109" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
 Identities = 288/361 (79%), Positives = 320/361 (88%)

Query:     1 MQDFYNLRKDVEAASDRVEEIRASXXXXXXXXXXXXXXXXXXDSSFWDNRAEAQETLQAL 60
             MQDFY LRKDVE AS RVEEIRAS                  D+SFWD+R +AQETL +L
Sbjct:    78 MQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSL 137

Query:    61 TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120
              D+KD++ LL++FKT ++DA TIVKLTEEMDSTD  LLEEA  IIKELNK+LD+FELTQL
Sbjct:   138 NDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQL 197

Query:   121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKS 180
             LSGPYDKEGAV+ ITAGAGGTDAQDWADMLLRMY+RWGEKQRYKT+VVE S GEEAGIKS
Sbjct:   198 LSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKS 257

Query:   181 AVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEE 240
             A +E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQTSFSG EVMPLLPEE++ ++IPEE
Sbjct:   258 ATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEE 317

Query:   241 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
             DL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKL+V
Sbjct:   318 DLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLMV 377

Query:   301 IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 360
             IAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDI SVMDG+L+PF
Sbjct:   378 IAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPF 437

Query:   361 I 361
             I
Sbjct:   438 I 438
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006415 "translational termination" evidence=IEA;ISS;IMP
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0006396 "RNA processing" evidence=IMP
GO:0009657 "plastid organization" evidence=IMP
TIGR_CMR|CHY_0163 CHY_0163 "peptide chain release factor 2, programmed frameshift" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2278 GSU_2278 "peptide chain release factor 2, programmed frameshift" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z8Y6 prfB "Peptide chain release factor 2" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0570 DET_0570 "peptide chain release factor 2, programmed frameshift" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P66026 prfB "Peptide chain release factor 2" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2585 SPO_2585 "peptide chain release factor 2" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P07012 prfB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0705 ECH_0705 "peptide chain release factor 2, programmed frameshift" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0604 NSE_0604 "peptide chain release factor 2, programmed frameshift" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6GIN7RF2_STAARNo assigned EC number0.39720.94450.9701yesno
B1LB88RF2_THESQNo assigned EC number0.42970.94450.9754yesno
Q8Y4D8RF2_LISMONo assigned EC number0.41660.94190.9754yesno
Q9CGX1RF2_LACLANo assigned EC number0.41160.94720.9835yesno
Q7A6R4RF2_STAANNo assigned EC number0.39720.94450.9701yesno
B2V5M0RF2_SULSYNo assigned EC number0.45290.86540.8888yesno
Q49VV3RF2_STAS1No assigned EC number0.41300.92340.9383yesno
A4F8R2RF2_SACENNo assigned EC number0.42890.93400.9645yesno
A0JYC5RF2_ARTS2No assigned EC number0.43100.90760.9272yesno
Q0TNE1RF2_CLOP1No assigned EC number0.46850.91290.9558yesno
B8HBH8RF2_ARTCANo assigned EC number0.440.91290.9326yesno
Q6GB76RF2_STAASNo assigned EC number0.39720.94450.9701yesno
P74476RF2_SYNY3No assigned EC number0.57490.96300.9811N/Ano
Q71WR9RF2_LISMFNo assigned EC number0.41660.94190.9754yesno
O67695RF2_AQUAENo assigned EC number0.46130.94450.9597yesno
C5CGS4RF2_KOSOTNo assigned EC number0.42140.94450.9675yesno
Q927Y4RF2_LISINNo assigned EC number0.41660.94190.9754yesno
Q5HHR5RF2_STAACNo assigned EC number0.39720.94450.9701yesno
Q8NS78RF2_CORGLNo assigned EC number0.42520.90230.9293yesno
A9WPT6RF2_RENSMNo assigned EC number0.43650.88390.8957yesno
B7IE81RF2_THEABNo assigned EC number0.44100.94720.9728yesno
A4QCD3RF2_CORGBNo assigned EC number0.42520.90230.9293yesno
Q9X1R5RF2_THEMANo assigned EC number0.42970.94450.9701yesno
Q99VM1RF2_STAAMNo assigned EC number0.39720.94450.9701yesno
A6TZN3RF2_STAA2No assigned EC number0.39720.94450.9701yesno
B7K0A6RF2_CYAP8No assigned EC number0.58880.94450.9808yesno
Q04GC3RF2_OENOBNo assigned EC number0.40220.95250.9704yesno
Q7U3W6RF2_SYNPXNo assigned EC number0.57140.95250.9652yesno
A5IM04RF2_THEP1No assigned EC number0.43250.94450.9754yesno
Q53915RF2_STRCONo assigned EC number0.41040.94720.9755yesno
Q02ZM8RF2_LACLSNo assigned EC number0.41160.94720.9835yesno
Q0SR12RF2_CLOPSNo assigned EC number0.46570.91290.9505yesno
Q88YL5RF2_LACPLNo assigned EC number0.44010.93400.9389yesno
Q2MGI2RF2_STRPNNo assigned EC number0.41570.95770.9972yesno
B9DRN6RF2_STRU0No assigned EC number0.42260.94190.9754yesno
Q4L4H9RF2_STAHJNo assigned EC number0.41140.95770.9784yesno
A8M3R1RF2_SALAINo assigned EC number0.43460.97090.9865yesno
A6WEK6RF2_KINRDNo assigned EC number0.43960.90760.9373yesno
A4X3K6RF2_SALTONo assigned EC number0.42810.97360.9892yesno
B8G607RF2_CHLADNo assigned EC number0.44720.94190.9727yesno
C5BYB6RF2_BEUC1No assigned EC number0.42450.91550.9278yesno
C4L5K9RF2_EXISANo assigned EC number0.43490.94450.9781yesno
Q2YSH5RF2_STAABNo assigned EC number0.39720.94450.9701yesno
B9L0E3RF2_THERPNo assigned EC number0.45220.92610.9385yesno
A2RLF5RF2_LACLMNo assigned EC number0.41430.94720.9835yesno
P28367RF2_BACSUNo assigned EC number0.43130.95250.9863yesno
A2RFN2RF2_STRPGNo assigned EC number0.41430.94190.9780yesno
A0LVP4RF2_ACIC1No assigned EC number0.41710.93660.9620yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025035001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (454 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017183001
RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)
   •  • 0.652
GSVIVG00020546001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)
•     • 0.603
GSVIVG00028236001
RecName- Full=Preprotein translocase secA subunit; (736 aa)
•  •  • 0.575
GSVIVG00033342001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)
   •• • 0.533
GSVIVG00025786001
SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (356 aa)
•   • • 0.486
GSVIVG00007283001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa)
   •  • 0.476
GSVIVG00025807001
RecName- Full=Translation initiation factor IF-2;; One of the essential components for the init [...] (607 aa)
  ••  • 0.472
GSVIVG00015443001
RecName- Full=Preprotein translocase secA subunit; (1045 aa)
•     • 0.461
GSVIVG00016542001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (136 aa)
•  •• • 0.444
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
•  •  • 0.443

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 1e-168
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 1e-127
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 1e-115
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 1e-109
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 5e-94
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 2e-89
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 2e-72
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 2e-63
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 5e-63
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 1e-59
pfam00472114 pfam00472, RF-1, RF-1 domain 1e-43
pfam03462115 pfam03462, PCRF, PCRF domain 5e-39
smart00937116 smart00937, PCRF, This domain is found in peptide 2e-38
PRK08179200 PRK08179, prfH, peptide chain release factor-like 2e-23
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 4e-23
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 7e-14
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information 
 Score =  474 bits (1222), Expect = e-168
 Identities = 165/364 (45%), Positives = 249/364 (68%), Gaps = 3/364 (0%)

Query: 5   YNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVK 64
             + + ++   +++E IR    +  L++ L ELE +A D  FW+++  AQ+  + L+ +K
Sbjct: 3   NEISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLK 62

Query: 65  DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGP 124
            K++ L + + ++DD   +++L EE D  D   L EA + +K L K L   EL +LLSG 
Sbjct: 63  AKLDTLEELRQRLDDLEELLELAEEED--DEETLAEAEAELKALEKKLAALELERLLSGE 120

Query: 125 YDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIE 184
           YD   A+++I AGAGGT+AQDWA MLLRMY+RW E+  +K  V++ S GEEAGIKSA  +
Sbjct: 121 YDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFK 180

Query: 185 VEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEI 244
           ++G YAYGYL  E G HR+VR SPF++ G R TSF+  EV P + +++++++I  +DL I
Sbjct: 181 IKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEV-DDTIEIEINPKDLRI 239

Query: 245 SFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEE 304
              R+ G GGQ+VNK ++AVRITHIPTG+ V+C  ERSQ  NK  A+  LKAKL  +  E
Sbjct: 240 DTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELE 299

Query: 305 QRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSY 364
           +RA+E   ++G+  +  WG QIR+YV HPY++VKD+RTG+ET +  +V+DG+L+ FI++Y
Sbjct: 300 KRAAEKDALKGEKKEIGWGSQIRSYVLHPYQMVKDLRTGYETGNTQAVLDGDLDGFIEAY 359

Query: 365 LKYK 368
           L+++
Sbjct: 360 LRWR 363

Length = 367
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 379
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 100.0
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 99.97
PRK09256138 hypothetical protein; Provisional 99.88
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.61
PRK10636638 putative ABC transporter ATP-binding protein; Prov 82.72
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-113  Score=829.66  Aligned_cols=348  Identities=30%  Similarity=0.470  Sum_probs=334.2

Q ss_pred             CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 017009           26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII  105 (379)
Q Consensus        26 ~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei  105 (379)
                      +|+.+..++.+|+..|++|++.+|++++++++++++.|.+++..|.+|++..+++.++.+|+.+  +.|++|.+++++++
T Consensus         8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~--~~D~em~ema~~Ei   85 (363)
T COG0216           8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE--EKDPEMREMAEEEI   85 (363)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence            5778888999999999999999999999999999999999999999999999999999999875  36999999999999


Q ss_pred             HHHHHHHHHHH----HHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEE
Q 017009          106 KELNKALDQFE----LTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSA  181 (379)
Q Consensus       106 ~~l~~~l~~le----l~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~  181 (379)
                      .+++.++..|+    +.+||+||+|.+||||||+||+||+||++||++||+||.+||+.+||+|+|++.++++.||||++
T Consensus        86 ~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEi  165 (363)
T COG0216          86 KELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEI  165 (363)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEE
Confidence            99999998875    66777999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccC
Q 017009          182 VIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE  261 (379)
Q Consensus       182 ~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~  261 (379)
                      ++.|+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||++++ ..+++|+++||+|+|||||||||||||+|+
T Consensus       166 i~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee-~~ei~I~~~DlrIDt~RsSGaGGQhVNtTd  244 (363)
T COG0216         166 IASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEE-VEEIEINPKDLRIDTFRSSGAGGQHVNTTD  244 (363)
T ss_pred             EEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCc-ccccccChHHceeeeeecCCCCCCCcCccc
Confidence            9999999999999999999999999999999999999999999999843 357999999999999999999999999999


Q ss_pred             ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccCCcceeecCCCcccccc
Q 017009          262 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EWGQQIRNYVFHPYKLVKDV  340 (379)
Q Consensus       262 saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~-~~g~~IRtY~~~~~~~v~Dh  340 (379)
                      |||||||+||||+|.||++||||+||++||++|++||++.+.+++.++..+.|++++++ +||++|||||| ||+|||||
T Consensus       245 SAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNf-PQnRVTDH  323 (363)
T COG0216         245 SAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNF-PQNRVTDH  323 (363)
T ss_pred             hhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCC-CCCcccch
Confidence            99999999999999999999999999999999999999999999999999999999996 99999999999 89999999


Q ss_pred             ccCccccCcccccC-CCcHHHHHHHHHHHHhchhccCC
Q 017009          341 RTGHETSDIVSVMD-GELEPFIKSYLKYKYSMSLSASD  377 (379)
Q Consensus       341 R~~~~~~~~~~vm~-G~ld~~i~~~~~~~~~~~~~~~~  377 (379)
                      |+|+++++|+.||+ |+||++|++++.+.+.++|.++.
T Consensus       324 RI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~  361 (363)
T COG0216         324 RINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELG  361 (363)
T ss_pred             hcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999 59999999999999999888754

>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 1e-67
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 5e-67
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 2e-64
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 1e-56
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 5e-56
2wh1_Y351 Insights Into Translational Termination From The St 5e-56
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 6e-56
3f1e_X378 Crystal Structure Of A Translation Termination Comp 6e-56
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 3e-40
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 4e-40
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 6e-36
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 7e-34
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 2e-26
2rsm_A115 Solution Structure And Sirna-Mediated Knockdown Ana 3e-05
4dh9_Y140 Crystal Structure Of Yaej Bound To The 70s Ribosome 5e-04
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure 
Iteration: 1

 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/315 (41%), Positives = 196/315 (62%), Gaps = 4/315 (1%)
Query: 47  WDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIK 106
           W+    AQ   +  + ++  ++ L   K  ++D   +++L  E D  D     EA + + 
Sbjct: 47  WNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEAD--DEETFNEAVAELD 104
Query: 107 ELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTR 166
            L + L Q E  ++ SG YD     + I AG+GGT+AQDWA ML RMY+RW E + +KT 
Sbjct: 105 ALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTE 164
Query: 167 VVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMP 226
           ++E+S GE AGIKS  I++ G YAYG+L  E G HR+VR+SPF++ G R TSFS A V P
Sbjct: 165 IIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYP 224
Query: 227 LLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLAN 286
            + ++ +D++I   DL I   RA G GGQ+VN+ E+AVRITHIPTG+  +C  +RSQ  N
Sbjct: 225 EV-DDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 283
Query: 287 KIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHET 346
           K +A+ ++KAKL  +  +++ +E + +  +     WG QIR+YV    + +KD+RTG ET
Sbjct: 284 KDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVET 342
Query: 347 SDIVSVMDGELEPFI 361
            +  +V+DG L+ FI
Sbjct: 343 RNTQAVLDGSLDQFI 357
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 Back     alignment and structure
>pdb|4DH9|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 1e-158
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 1e-154
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 6e-60
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 7e-60
2b3t_B360 RF-1, peptide chain release factor 1; translation 2e-56
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 8e-55
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 3e-34
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 1e-24
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 1e-19
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
 Score =  447 bits (1151), Expect = e-158
 Identities = 139/369 (37%), Positives = 211/369 (57%), Gaps = 8/369 (2%)

Query: 10  DVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL 69
           D+E  + R+E +     + Q E  L ELE +  D S W++   A++  Q    ++  ++ 
Sbjct: 2   DLERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDT 61

Query: 70  LTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEG 129
               ++ +   + +++     +       E     ++E  K LD+     LL+ P+ ++ 
Sbjct: 62  FRSLESDLQGLLELMEELPAEER------EALKPELEEAAKKLDELYHQTLLNFPHAEKN 115

Query: 130 AVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRY 189
           A+++I  GAGGT+A DWA+MLLRMY R+ E+Q ++  VV+ + G EAGI  A I V+G  
Sbjct: 116 AILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGEN 175

Query: 190 AYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRA 249
           AYG LS E G HR+VR SPF+A G R TSF+G EV+P + +E ++V +  E+L I   RA
Sbjct: 176 AYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEV-DEEVEVVLKPEELRIDVMRA 234

Query: 250 GGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASE 309
            G GGQ VN  ++AVR+ H+PTG+TV C   RSQ+ NK  AL  LKA+L  +  ++R  E
Sbjct: 235 SGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEE 294

Query: 310 IKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKY 369
           +K +RG+    EWG QIR+YV      VKD RTG    D  +V+DG+L   I + L++K 
Sbjct: 295 LKALRGEVRPIEWGSQIRSYVLDK-NYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKA 353

Query: 370 SMSLSASDA 378
                  + 
Sbjct: 354 GRRQGTEEV 362
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.93
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.93
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.9
2lw1_A89 ABC transporter ATP-binding protein UUP; ABC REG s 96.25
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
Probab=100.00  E-value=1.3e-115  Score=867.11  Aligned_cols=363  Identities=38%  Similarity=0.681  Sum_probs=350.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017009            1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDA   80 (379)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~   80 (379)
                      ||++++++..++++..++..++.+++++.+..++++|+.++++|+||+||++|++++++++.|+++|+.|+.|++.++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~   80 (365)
T 1gqe_A            1 MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV   80 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhh
Q 017009           81 VTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEK  160 (379)
Q Consensus        81 ~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~  160 (379)
                      +++.+|+.+  +.|++|++++.+++..+++.++++|+..||+||+|.+||||||+||+||+||++||+|||+||.+||++
T Consensus        81 ~~~~el~~~--e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~  158 (365)
T 1gqe_A           81 SGLLELAVE--ADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAES  158 (365)
T ss_dssp             HHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999876  359999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCC
Q 017009          161 QRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEE  240 (379)
Q Consensus       161 ~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~  240 (379)
                      +||++++++.++|+.+|||+|+|.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++++ ++++.|+++
T Consensus       159 ~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~-~v~i~i~~~  237 (365)
T 1gqe_A          159 RGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPA  237 (365)
T ss_dssp             TTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGG
T ss_pred             CCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCc-ccccccCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999853 578999999


Q ss_pred             CeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 017009          241 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA  320 (379)
Q Consensus       241 dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~  320 (379)
                      ||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.++.|+.+..+
T Consensus       238 dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i  317 (365)
T 1gqe_A          238 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDI  317 (365)
T ss_dssp             GEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCC
T ss_pred             HceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888899888888


Q ss_pred             cccCCcceeecCCCccccccccCccccCcccccCCCcHHHHHHHHHH
Q 017009          321 EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY  367 (379)
Q Consensus       321 ~~g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~  367 (379)
                      .||++||||||+||+ |||||||++++|+++||+|+||+||++|+.|
T Consensus       318 ~~G~~IRtY~f~~~r-VkDhRt~~~~~~l~~vldGdld~~I~a~l~~  363 (365)
T 1gqe_A          318 GWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKA  363 (365)
T ss_dssp             CSCSEEEEEEGGGTE-EEETTTCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred             CccCCeEeEECCCCe-eeccccCceECCHHHHhCCCHHHHHHHHHHh
Confidence            999999999998877 9999999999999999999999999999976
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 379
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 4e-89
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 1e-66
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 1e-57
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 5e-17
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  271 bits (693), Expect = 4e-89
 Identities = 136/360 (37%), Positives = 215/360 (59%), Gaps = 4/360 (1%)

Query: 7   LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
           +   ++  ++R + +R        ++ L E+  +      W+    AQ   +  + ++  
Sbjct: 4   VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAV 63

Query: 67  INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
           ++ L   K  ++D   +++L  E D  +     EA + +  L + L Q E  ++ SG YD
Sbjct: 64  VDTLDQMKQGLEDVSGLLELAVEADDEETF--NEAVAELDALEEKLAQLEFRRMFSGEYD 121

Query: 127 KEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVE 186
                + I AG+GGT+AQDWA ML RMY+RW E + +KT ++E+S GE AGIKS  I++ 
Sbjct: 122 SADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKIS 181

Query: 187 GRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISF 246
           G YAYG+L  E G HR+VR+SPF++ G R TSFS A V P + ++ +D++I   DL I  
Sbjct: 182 GDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDD-IDIEINPADLRIDV 240

Query: 247 SRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQR 306
            RA G GGQ+VN+ E+AVRITHIPTG+  +C  +RSQ  NK +A+ ++KAKL  +  +++
Sbjct: 241 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKK 300

Query: 307 ASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 366
            +E + +  +     WG QIR+YV    + +KD+RTG ET +  +V+DG L+ FI++ LK
Sbjct: 301 NAEKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLK 359
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.82
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.7e-119  Score=893.17  Aligned_cols=360  Identities=38%  Similarity=0.678  Sum_probs=345.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017009            4 FYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTI   83 (379)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l   83 (379)
                      +++++..|+++..++..++++||++.++.|+++||.++++|+||+||++|++++++++.|+++|+.|+.|++.++|++++
T Consensus         1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL   80 (362)
T d1gqea_           1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL   80 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCc
Q 017009           84 VKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRY  163 (379)
Q Consensus        84 ~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~  163 (379)
                      ++|+.+  ++|+++.+++..++..+.+.+++|++.+||+||+|.+||||||+||+||+||++||+||||||++||+++||
T Consensus        81 ~Ela~e--e~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gw  158 (362)
T d1gqea_          81 LELAVE--ADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF  158 (362)
T ss_dssp             HHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhh--hhhHHHHHHHHHHHHHHhhhhhHHHHhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCC
Confidence            999876  358999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCee
Q 017009          164 KTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLE  243 (379)
Q Consensus       164 ~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~  243 (379)
                      ++++++.++++.+|||+|+|.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|.+++ .++++|+++||+
T Consensus       159 k~eiid~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~-~~~~~i~~~dl~  237 (362)
T d1gqea_         159 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPADLR  237 (362)
T ss_dssp             EEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGGGEE
T ss_pred             eEEEeccccCCccceeEEEEEEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCC-ccceecChHHeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999754 578999999999


Q ss_pred             eeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 017009          244 ISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWG  323 (379)
Q Consensus       244 i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g  323 (379)
                      |+|+|||||||||||||+|||||||+||||+|.||++|||++||+.||++|++||++++.+++.++.+..++.+..++||
T Consensus       238 i~~~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g  317 (362)
T d1gqea_         238 IDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWG  317 (362)
T ss_dssp             EEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSC
T ss_pred             EEEeecCCCCccchhhhhceeEEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999888877766666777778999


Q ss_pred             CCcceeecCCCccccccccCccccCcccccCCCcHHHHHHHHHH
Q 017009          324 QQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY  367 (379)
Q Consensus       324 ~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~  367 (379)
                      ++||||||+|+ ||||||||++++||++||+|+||+||++||+.
T Consensus       318 ~~iRtY~~~~~-rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~  360 (362)
T d1gqea_         318 SQIRSYVLDDS-RIKDLRTGVETRNTQAVLDGSLDQFIEASLKA  360 (362)
T ss_dssp             SEEEEEEGGGT-EEEETTTCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred             CCccCccCCCC-cccccccCCeeCChhHHhCCCHHHHHHHHHHC
Confidence            99999999665 69999999999999999999999999999864
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure