Citrus Sinensis ID: 017515

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MNPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYLC
cccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHcccccccEEEEEEEcccccccccccccccEEEEEEEEccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEccEEEEEccccccccHHHHHHHHHHHHHHHHccccc
cccccccccHHHHHccccccHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHccHHHccEcccccccHHHcccccccccHccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccccccHHHHHHHHHHccccccEEEEEEccccccccEEEEEEEEEccccEEEEEccccccHcccHHHHHHHHHHHHHHccccc
mnpesftlpratvtDYRLLKEAMltslpspemedaVFYVENIINYNFKNKRLLEEALthssytdstsyQRLEFIGDAALGLALSNYVflaypqldpgqLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVsqedntavyggsikaPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLlepivtleelqqqpqpVTLLFKLCQkngkqvdiKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQsmpvncdvceifDDIDEKFEIEAAKQKLHELcgkkkwpkpsykiekdegpshdkkFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYLC
mnpesftlpratvtdyRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVsqedntavyggsikAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGkqvdikhwrknRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLhelcgkkkwpkpsYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAlrestylc
MNPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYLC
***********TVTDYRLLKEAMLTSL****MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL***********LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVA******************LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKK*********************MSAVQIATTDGVLFIT*****************************
***********************************VFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL****KEF**AVSQ*********SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVAS*****K**AKLNAAREALEKLA**************************QKLHELCGKKKWP*****************FMSAVQIATTDGVLF*******************MLRALRESTYL*
MNPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYLC
****SFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED*****GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD************EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAE*SAASMMLRALRES**LC
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MNPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASxxxxxxxxxxxxxxxxxxxxxAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q9LTQ0391 Ribonuclease 3-like prote yes no 0.916 0.867 0.553 1e-108
Q6ATG6317 Ribonuclease 3-like prote yes no 0.767 0.895 0.520 4e-76
Q9FKF0 957 Ribonuclease 3-like prote no no 0.870 0.336 0.348 2e-52
Q8LMR21883 Endoribonuclease Dicer ho no no 0.867 0.170 0.368 5e-52
Q9SP321909 Endoribonuclease Dicer ho no no 0.881 0.170 0.356 2e-51
Q69KJ0299 Ribonuclease 3-like prote no no 0.651 0.806 0.426 1e-49
Q5N8701651 Endoribonuclease Dicer ho no no 0.935 0.209 0.311 2e-35
Q9LXW71580 Endoribonuclease Dicer ho no no 0.770 0.180 0.312 3e-35
Q10HL31410 Endoribonuclease Dicer ho no no 0.608 0.159 0.347 1e-29
Q7XD961637 Endoribonuclease Dicer ho no no 0.937 0.211 0.262 2e-28
>sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1 Back     alignment and function desciption
 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/347 (55%), Positives = 268/347 (77%), Gaps = 8/347 (2%)

Query: 26  SLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
           S+P S EME ++  VE I+NY F NK LL+EA+TH+S TD  SY+RLEFIGD+A+GLA+S
Sbjct: 50  SVPVSSEME-SMEAVEKILNYKFSNKSLLKEAITHTSCTDFPSYERLEFIGDSAIGLAIS 108

Query: 85  NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
           NY++L YP L+P  LSLLRAAN+STEKLARV++ HG Y F+R +A +LD+KVKEF+EAV 
Sbjct: 109 NYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVG 168

Query: 145 QEDNTAV-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
           +ED+ +V YGG +KAPKVLAD+ ES+A A+YVD++FDLQ+LW+IFRGLLEPIVTL++LQ+
Sbjct: 169 KEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228

Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
           QPQPV++LFKLC K+ K++DIK+W+    +IA +Y+D   +AS  +E K+IA+L AA+EA
Sbjct: 229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEA 288

Query: 264 LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
           L KL++  PV      + D+   + ++  AK KL+E+C KKKWPKP Y +E+D      K
Sbjct: 289 LRKLSEVFPVEM----VIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGK 344

Query: 324 KFMSAVQIATT-DGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
           +F+ + +I  T +  L++ GDE+S++K AE+S+A  M+RALR+S YL
Sbjct: 345 RFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
Ribonuclease that cleaves double-stranded RNA (dsRNA). Required for 3'-external transcribed spacer (ETS) cleavage of the pre-rRNA precursors. May promote the production of 21 nucleotide small interfering RNA (siRNA) during post-transcriptional gene silencing (PTGS).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -
>sp|Q6ATG6|RTL2_ORYSJ Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKF0|RTL3_ARATH Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana GN=RTL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 Back     alignment and function description
>sp|Q69KJ0|RTL3_ORYSJ Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1 Back     alignment and function description
>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1 Back     alignment and function description
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2 Back     alignment and function description
>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1 Back     alignment and function description
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
255577153342 ribonuclease III, putative [Ricinus comm 0.916 0.991 0.712 1e-142
225460893364 PREDICTED: ribonuclease 3-like protein 2 0.924 0.939 0.708 1e-138
297737474337 unnamed protein product [Vitis vinifera] 0.908 0.997 0.712 1e-137
449459642338 PREDICTED: ribonuclease 3-like protein 2 0.913 1.0 0.656 1e-130
449526603338 PREDICTED: LOW QUALITY PROTEIN: ribonucl 0.913 1.0 0.644 1e-126
356552945345 PREDICTED: ribonuclease 3-like protein 2 0.891 0.956 0.630 1e-118
357464753344 Endoribonuclease Dicer-like protein [Med 0.9 0.968 0.591 1e-115
388495198344 unknown [Medicago truncatula] 0.908 0.976 0.585 1e-114
297834980391 hypothetical protein ARALYDRAFT_479566 [ 0.916 0.867 0.561 1e-110
18402610391 RNAse THREE-like protein 2 [Arabidopsis 0.916 0.867 0.553 1e-107
>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis] gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/341 (71%), Positives = 293/341 (85%), Gaps = 2/341 (0%)

Query: 31  EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
           E   ++  VE I+NY FKNK+L+EEALTHSSYT S +YQRLEFIGDAALGLALSN+VFLA
Sbjct: 2   EASSSISAVEKILNYTFKNKQLVEEALTHSSYTASPNYQRLEFIGDAALGLALSNHVFLA 61

Query: 91  YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
           YP LDPG LSLLRAANISTEKLARVAVKHG ++F+RH+A ALDDKVKEF++AV +E++ A
Sbjct: 62  YPDLDPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREEDEA 121

Query: 151 V-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT 209
           V +GG++KAPKVLADIVES+AAA+YVD++FDLQ+LW+IFRGLLEPIVT E+LQQQPQP+T
Sbjct: 122 VAHGGTVKAPKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQPMT 181

Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
           +LF+LCQK GK+VDI HW+   KNIAS+YVDG FVAS SSEQKE AKLNAA+ AL+KL+ 
Sbjct: 182 MLFELCQKKGKEVDIVHWKSGTKNIASIYVDGGFVASGSSEQKETAKLNAAKGALQKLSH 241

Query: 270 SMPVNCDVCE-IFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328
            MP N    E +   I   FEIE AK+KLHELCGKKKWPKP+Y IEK+ GPSH+KK++ +
Sbjct: 242 LMPSNLGHFEDVLKTIGGSFEIEGAKRKLHELCGKKKWPKPTYNIEKETGPSHEKKYVCS 301

Query: 329 VQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
           VQIAT DGVL++ GDEK RVK+A+NSAAS+M+RAL+ES YL
Sbjct: 302 VQIATVDGVLYMRGDEKMRVKEADNSAASLMIRALQESNYL 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460893|ref|XP_002278706.1| PREDICTED: ribonuclease 3-like protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459642|ref|XP_004147555.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526603|ref|XP_004170303.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356552945|ref|XP_003544820.1| PREDICTED: ribonuclease 3-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357464753|ref|XP_003602658.1| Endoribonuclease Dicer-like protein [Medicago truncatula] gi|355491706|gb|AES72909.1| Endoribonuclease Dicer-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388495198|gb|AFK35665.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18402610|ref|NP_566661.1| RNAse THREE-like protein 2 [Arabidopsis thaliana] gi|75274109|sp|Q9LTQ0.1|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName: Full=Ribonuclease III-like protein 2; Short=RNase III-like protein 2; AltName: Full=Ribonuclease three-like protein 2 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana] gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2092409391 RTL2 "RNAse THREE-like protein 0.916 0.867 0.553 7.1e-100
TAIR|locus:2153333 957 RTL3 "RNAse THREE-like protein 0.645 0.249 0.431 3e-47
UNIPROTKB|Q8LMR21883 DCL1 "Endoribonuclease Dicer h 0.9 0.176 0.365 1.3e-48
TAIR|locus:504955425264 RTL1 "RNAse II-like 1" [Arabid 0.602 0.844 0.389 1.3e-36
TAIR|locus:21492591702 DCL4 "dicer-like 4" [Arabidops 0.610 0.132 0.315 1e-32
UNIPROTKB|A7LFZ6 1657 DCL4 "Endoribonuclease Dicer h 0.670 0.149 0.294 2.5e-32
TAIR|locus:20977051388 DCL2 "dicer-like 2" [Arabidops 0.627 0.167 0.330 2.4e-26
FB|FBgn00390162249 Dcr-1 "Dicer-1" [Drosophila me 0.605 0.099 0.307 3.3e-23
RGD|1309381401 Dicer1 "dicer 1, ribonuclease 0.627 0.578 0.302 2.5e-19
UNIPROTKB|B3KRG4820 DICER1 "Endoribonuclease Dicer 0.627 0.282 0.301 4.4e-19
TAIR|locus:2092409 RTL2 "RNAse THREE-like protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 192/347 (55%), Positives = 268/347 (77%)

Query:    26 SLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
             S+P S EME ++  VE I+NY F NK LL+EA+TH+S TD  SY+RLEFIGD+A+GLA+S
Sbjct:    50 SVPVSSEME-SMEAVEKILNYKFSNKSLLKEAITHTSCTDFPSYERLEFIGDSAIGLAIS 108

Query:    85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
             NY++L YP L+P  LSLLRAAN+STEKLARV++ HG Y F+R +A +LD+KVKEF+EAV 
Sbjct:   109 NYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVG 168

Query:   145 QEDNTAV-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
             +ED+ +V YGG +KAPKVLAD+ ES+A A+YVD++FDLQ+LW+IFRGLLEPIVTL++LQ+
Sbjct:   169 KEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228

Query:   204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
             QPQPV++LFKLC K+ K++DIK+W+    +IA +Y+D   +AS  +E K+IA+L AA+EA
Sbjct:   229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEA 288

Query:   264 LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
             L KL++  PV      + D+   + ++  AK KL+E+C KKKWPKP Y +E+D      K
Sbjct:   289 LRKLSEVFPVEM----VIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGK 344

Query:   324 KFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
             +F+ + +I  T+   L++ GDE+S++K AE+S+A  M+RALR+S YL
Sbjct:   345 RFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
GO:0003723 "RNA binding" evidence=IEA
GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS
GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006396 "RNA processing" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0051607 "defense response to virus" evidence=RCA
TAIR|locus:2153333 RTL3 "RNAse THREE-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:504955425 RTL1 "RNAse II-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2097705 DCL2 "dicer-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0039016 Dcr-1 "Dicer-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1309381 Dicer1 "dicer 1, ribonuclease type III" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B3KRG4 DICER1 "Endoribonuclease Dicer" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6ATG6RTL2_ORYSJ3, ., 1, ., 2, 6, ., -0.52020.76750.8958yesno
Q9LTQ0RTL2_ARATH3, ., 1, ., 2, 6, ., -0.55330.91620.8670yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.260.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027279001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (337 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002216001
SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (485 aa)
      • 0.481
GSVIVG00028703001
SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (621 aa)
•     • 0.471
GSVIVG00000640001
RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)
      • 0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
COG0571235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 2e-37
PRK00102229 PRK00102, rnc, ribonuclease III; Reviewed 5e-36
cd00593133 cd00593, RIBOc, RIBOc 7e-36
TIGR02191220 TIGR02191, RNaseIII, ribonuclease III, bacterial 8e-35
smart00535129 smart00535, RIBOc, Ribonuclease III family 5e-31
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 7e-23
PRK12371235 PRK12371, PRK12371, ribonuclease III; Reviewed 5e-18
cd0004868 cd00048, DSRM, Double-stranded RNA binding motif 2e-15
pfam0003566 pfam00035, dsrm, Double-stranded RNA binding motif 3e-12
smart0035867 smart00358, DSRM, Double-stranded RNA binding moti 8e-12
PRK12372413 PRK12372, PRK12372, ribonuclease III; Reviewed 8e-11
PRK14718 467 PRK14718, PRK14718, ribonuclease III; Provisional 9e-11
PRK00102229 PRK00102, rnc, ribonuclease III; Reviewed 3e-09
TIGR02191220 TIGR02191, RNaseIII, ribonuclease III, bacterial 2e-08
COG0571235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 4e-08
pfam0003566 pfam00035, dsrm, Double-stranded RNA binding motif 6e-08
smart0035867 smart00358, DSRM, Double-stranded RNA binding moti 9e-06
PRK12371235 PRK12371, PRK12371, ribonuclease III; Reviewed 1e-04
cd0004868 cd00048, DSRM, Double-stranded RNA binding motif 6e-04
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information 
 Score =  134 bits (340), Expect = 2e-37
 Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 32/239 (13%)

Query: 40  ENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
           E  + Y FK+K LLE+ALTH SY        + +RLEF+GDA LGL ++ Y+F  YP L 
Sbjct: 12  EKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLP 71

Query: 96  PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
            G+LS LRAA +S E LA +A + G   ++R                           G 
Sbjct: 72  EGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKS-------------------GG 112

Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKL 214
            +   +LAD  E++  AIY  +D  L+        L  P +  ++   Q   P T L +L
Sbjct: 113 RRRESILADAFEALIGAIY--LDSGLEAARKFILKLFLPRLEEIDAGDQFKDPKTRLQEL 170

Query: 215 CQKNGK------QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
            Q  G        V  +    +++    V V G  + +     K+ A+  AA +AL+KL
Sbjct: 171 LQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKL 229

Length = 235
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 100.0
PRK12371235 ribonuclease III; Reviewed 100.0
PRK14718 467 ribonuclease III; Provisional 100.0
PRK12372 413 ribonuclease III; Reviewed 100.0
PRK00102229 rnc ribonuclease III; Reviewed 100.0
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 100.0
KOG1817533 consensus Ribonuclease [RNA processing and modific 100.0
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 99.96
smart00535129 RIBOc Ribonuclease III family. 99.94
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 99.94
KOG3732 339 consensus Staufen and related double-stranded-RNA- 99.94
KOG3769333 consensus Ribonuclease III domain proteins [Transl 99.92
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 99.9
KOG1817 533 consensus Ribonuclease [RNA processing and modific 99.88
PHA02701183 ORF020 dsRNA-binding PKR inhibitor; Provisional 99.66
cd0004868 DSRM Double-stranded RNA binding motif. Binding is 99.63
KOG07011606 consensus dsRNA-specific nuclease Dicer and relate 99.61
smart0035867 DSRM Double-stranded RNA binding motif. 99.6
PHA03103183 double-strand RNA-binding protein; Provisional 99.58
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 99.55
PF0003567 dsrm: Double-stranded RNA binding motif; InterPro: 99.52
KOG3732 339 consensus Staufen and related double-stranded-RNA- 99.5
PF1470980 DND1_DSRM: double strand RNA binding domain from D 99.5
PHA03103183 double-strand RNA-binding protein; Provisional 99.4
PHA02701183 ORF020 dsRNA-binding PKR inhibitor; Provisional 99.4
smart0035867 DSRM Double-stranded RNA binding motif. 99.37
PF0003567 dsrm: Double-stranded RNA binding motif; InterPro: 99.36
cd0004868 DSRM Double-stranded RNA binding motif. Binding is 99.33
PRK12371235 ribonuclease III; Reviewed 99.17
KOG4334650 consensus Uncharacterized conserved protein, conta 99.05
PRK14718 467 ribonuclease III; Provisional 99.04
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 99.02
PRK12372413 ribonuclease III; Reviewed 99.01
KOG2777 542 consensus tRNA-specific adenosine deaminase 1 [RNA 98.99
PRK00102229 rnc ribonuclease III; Reviewed 98.96
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 98.94
PF1470980 DND1_DSRM: double strand RNA binding domain from D 98.59
KOG3769333 consensus Ribonuclease III domain proteins [Transl 98.08
COG1939132 Ribonuclease III family protein [Replication, reco 97.93
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 97.72
PF0336890 Dicer_dimer: Dicer dimerisation domain; InterPro: 97.53
KOG2777 542 consensus tRNA-specific adenosine deaminase 1 [RNA 97.42
KOG4334 650 consensus Uncharacterized conserved protein, conta 97.37
PF0336890 Dicer_dimer: Dicer dimerisation domain; InterPro: 96.24
KOG3792 816 consensus Transcription factor NFAT, subunit NF90 96.19
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 95.8
PF14954 252 LIX1: Limb expression 1 93.67
KOG2334477 consensus tRNA-dihydrouridine synthase [Translatio 92.73
PF14954252 LIX1: Limb expression 1 92.0
PF11469120 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 87.25
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-52  Score=373.30  Aligned_cols=223  Identities=36%  Similarity=0.582  Sum_probs=200.8

Q ss_pred             HHHHHHHHHcCcccCChhHHHHHhcCCCCCC----CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcCh
Q 017515           34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIST  109 (370)
Q Consensus        34 ~~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~----~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn  109 (370)
                      ..+..|++.+||.|+|++||.+||||+|+.+    ..||||||||||+||+++|++|||++||+.++|.||.+|+.+||+
T Consensus         6 ~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~   85 (235)
T COG0571           6 KKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSE   85 (235)
T ss_pred             HHHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999986    468999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHH
Q 017515          110 EKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR  189 (370)
Q Consensus       110 ~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~  189 (370)
                      .+|+.+|..+||++||+.+..+.                  ..++ ...+++++|+|||+|||||+|+|++.++  +|+.
T Consensus        86 ~~La~ia~~l~l~~~l~lg~ge~------------------~~gg-~~~~silaD~~EAligAiylD~g~~~~~--~~i~  144 (235)
T COG0571          86 ESLAEIARELGLGDYLRLGKGEE------------------KSGG-RRRESILADAFEALIGAIYLDSGLEAAR--KFIL  144 (235)
T ss_pred             HHHHHHHHHhCccchhhccCChh------------------hcCC-CCchhHHHHHHHHHHHHHHHhCChHHHH--HHHH
Confidence            99999999999999999987643                  3445 6689999999999999999999966554  7899


Q ss_pred             HhhhhhhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515          190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ  269 (370)
Q Consensus       190 ~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~  269 (370)
                      +++.+.+...+..                                                                   
T Consensus       145 ~l~~~~~~~~~~~-------------------------------------------------------------------  157 (235)
T COG0571         145 KLFLPRLEEIDAG-------------------------------------------------------------------  157 (235)
T ss_pred             HHHHHHHhhcccc-------------------------------------------------------------------
Confidence            9998877532111                                                                   


Q ss_pred             cCCCcccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchh
Q 017515          270 SMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVK  349 (370)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk  349 (370)
                                        ....|||+.||||||+++...|.|.++.++||+|++.|+++|.|   ++..+++|.|+|| |
T Consensus       158 ------------------~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v---~~~~~g~G~G~sk-k  215 (235)
T COG0571         158 ------------------DQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAV---GGKELGTGKGRSK-K  215 (235)
T ss_pred             ------------------ccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEE---CCeeEEEecccCH-H
Confidence                              12368999999999999999999999999999999999999999   6899999999999 9


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 017515          350 DAENSAASMMLRALRES  366 (370)
Q Consensus       350 ~A~~~AA~~~l~~l~~~  366 (370)
                      +|||.||+.||..|...
T Consensus       216 ~AEq~AA~~al~~l~~~  232 (235)
T COG0571         216 EAEQAAAEQALKKLGVK  232 (235)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999998753

>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>KOG1817 consensus Ribonuclease [RNA processing and modification] Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] Back     alignment and domain information
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>KOG1817 consensus Ribonuclease [RNA processing and modification] Back     alignment and domain information
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional Back     alignment and domain information
>cd00048 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>smart00358 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>PHA03103 double-strand RNA-binding protein; Provisional Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] Back     alignment and domain information
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] Back     alignment and domain information
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 Back     alignment and domain information
>PHA03103 double-strand RNA-binding protein; Provisional Back     alignment and domain information
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional Back     alignment and domain information
>smart00358 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] Back     alignment and domain information
>cd00048 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 Back     alignment and domain information
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases Back     alignment and domain information
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] Back     alignment and domain information
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] Back     alignment and domain information
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases Back     alignment and domain information
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PF14954 LIX1: Limb expression 1 Back     alignment and domain information
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14954 LIX1: Limb expression 1 Back     alignment and domain information
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3c4t_A265 Structure Of Rnaseiiib And Dsrna Binding Domains Of 2e-20
2eb1_A200 Crystal Structure Of The C-Terminal Rnase Iii Domai 2e-19
3c4b_A265 Structure Of Rnaseiiib And Dsrna Binding Domains Of 4e-18
3n3w_A248 2.2 Angstrom Resolution Crystal Structure Of Nuclea 3e-15
3o2r_A170 Structural Flexibility In Region Involved In Dimer 1e-14
3o2r_D144 Structural Flexibility In Region Involved In Dimer 2e-13
1o0w_A252 Crystal Structure Of Ribonuclease Iii (Tm1102) From 5e-13
1yyk_A221 Crystal Structure Of Rnase Iii From Aquifex Aeolicu 4e-11
1yz9_A221 Crystal Structure Of Rnase Iii Mutant E110q From Aq 1e-10
1i4s_A147 Crystal Structure Of Rnase Iii Endonuclease Domain 1e-10
1rc7_A220 Crystal Structure Of Rnase Iii Mutant E110k From Aq 1e-10
1yyo_A221 Crystal Structure Of Rnase Iii Mutant E110k From Aq 1e-10
1jfz_A154 Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En 1e-10
2ez6_A221 Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 1e-10
2a11_A242 Crystal Structure Of Nuclease Domain Of Ribonuclase 5e-08
2lrs_A71 The Second Dsrbd Domain From A. Thaliana Dicer-like 4e-07
3rv0_A341 Crystal Structure Of K. Polysporus Dcr1 Without The 2e-04
2l2n_A103 Backbone 1h, 13c, And 15n Chemical Shift Assignment 3e-04
3rv1_A246 Crystal Structure Of The N-Terminal And Rnase Iii D 5e-04
3adg_A73 Structure Of Arabidopsis Hyl1 And Its Molecular Imp 9e-04
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Back     alignment and structure 
Iteration: 1

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 17/244 (6%)
Query: 40  ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
           E  INY FKNK  L +A TH+SY   T +  YQRLEF+GDA L   ++ +++    Q  P
Sbjct: 19  EKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHSP 78
Query: 97  GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
           G L+ LR+A ++    A +AVK+ ++K+ +  +  L   + +F +   +++        +
Sbjct: 79  GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 138
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
           +              PK + DI ES+A AIY+D    L+ +W ++  +++P++       
Sbjct: 139 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 198
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
              PV  L ++  +  K    +     +  + +V V G            IAK  AAR A
Sbjct: 199 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 257
Query: 264 LEKL 267
           L  L
Sbjct: 258 LRSL 261
>pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 Back     alignment and structure
>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Back     alignment and structure
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 Back     alignment and structure
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 Back     alignment and structure
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Back     alignment and structure
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 Back     alignment and structure
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 Back     alignment and structure
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 Back     alignment and structure
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 Back     alignment and structure
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 Back     alignment and structure
>pdb|2LRS|A Chain A, The Second Dsrbd Domain From A. Thaliana Dicer-like 1 Length = 71 Back     alignment and structure
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The C-Terminal Dsrbd Length = 341 Back     alignment and structure
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103 Back     alignment and structure
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains Of K. Polysporus Dcr1 E224q Mutant Length = 246 Back     alignment and structure
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 73 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 3e-68
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 5e-10
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 4e-38
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 1e-11
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 2e-36
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 8e-12
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 4e-35
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 1e-11
3o2r_A170 Ribonuclease III; structural genomics, center for 3e-33
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 2e-32
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 1e-09
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 5e-32
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 1e-04
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 2e-26
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 1e-25
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 4e-24
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 5e-04
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 1e-17
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 1e-11
2yt4_A232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 3e-16
3adj_A76 F21M12.9 protein; HYL1, miRNA processing, RNA bind 2e-15
3adl_A88 RISC-loading complex subunit tarbp2; TRBP2, miRNA 3e-13
3adg_A73 F21M12.9 protein; HYL1, miRNA processing mechanism 4e-13
1di2_A69 XLRBPA, double stranded RNA binding protein A; pro 7e-13
2cpn_A89 TAR RNA-binding protein 2; double-stranded RNA bin 8e-13
1whn_A128 Hypothetical protein riken cDNA 2310016K04; double 3e-12
2l2n_A103 Hyponastic leave 1; DSRBD, miRNA, RNA binding prot 4e-12
3llh_A90 RISC-loading complex subunit tarbp2; DSRBD, DSRM, 5e-12
1x49_A97 Interferon-induced, double-stranded RNA- activated 5e-12
1ekz_A76 DSRBDIII, maternal effect protein (staufen); struc 2e-11
2dix_A84 Interferon-inducible double stranded RNA- dependen 2e-11
1uhz_A89 Staufen (RNA binding protein) homolog 2; DSRM, sta 5e-11
1whq_A99 RNA helicase A; double-stranded RNA binding domain 2e-10
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 5e-10
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 5e-04
1uil_A113 Double-stranded RNA-binding motif; structural geno 7e-10
2khx_A85 Ribonuclease 3; drosha, RNA binding domain, hydrol 9e-10
2l33_A91 Interleukin enhancer-binding factor 3; structural 1e-09
2l33_A91 Interleukin enhancer-binding factor 3; structural 3e-05
3p1x_A75 Interleukin enhancer-binding factor 3; structural 2e-09
3p1x_A75 Interleukin enhancer-binding factor 3; structural 5e-05
2b7t_A73 Double-stranded RNA-specific editase 1; RNA editin 7e-09
2ljh_A114 Double-stranded RNA-specific editase ADAR; DSRBD, 1e-08
2dmy_A97 Spermatid perinuclear RNA-binding protein; DSRM do 2e-08
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 3e-08
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2l3j_A236 Double-stranded RNA-specific editase 1; editing, d 6e-06
2l3j_A 236 Double-stranded RNA-specific editase 1; editing, d 3e-05
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
 Score =  215 bits (548), Expect = 3e-68
 Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 21/255 (8%)

Query: 31  EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYV 87
            +       E  INY FKNK  L +A TH+SY  +T    YQRLEF+GDA L   ++ ++
Sbjct: 10  HLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHL 69

Query: 88  FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
           +    Q  PG L+ LR+A ++    A +AVK+ ++K+ +  +  L   + +F +   +++
Sbjct: 70  YEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKN 129

Query: 148 NTAVYG-------------GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
                                I+ PK + DI ES+A AIY+D    L+ +W ++  +++P
Sbjct: 130 EMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQP 189

Query: 195 IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHW--RKNRKNIASVYVDGSFVASASSEQK 252
           ++          P + + +L +   +           + K   +V V G           
Sbjct: 190 LIEKFSAN---VPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSY 246

Query: 253 EIAKLNAAREALEKL 267
            IAK  AAR AL  L
Sbjct: 247 RIAKSAAARRALRSL 261
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 Back     alignment and structure
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 Back     alignment and structure
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 Back     alignment and structure
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 Back     alignment and structure
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 Back     alignment and structure
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 Back     alignment and structure
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 Back     alignment and structure
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 Back     alignment and structure
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90 Back     alignment and structure
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 Back     alignment and structure
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 Back     alignment and structure
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 Back     alignment and structure
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 Back     alignment and structure
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99 Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 Back     alignment and structure
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Length = 113 Back     alignment and structure
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75 Back     alignment and structure
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75 Back     alignment and structure
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73 Back     alignment and structure
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114 Back     alignment and structure
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97 Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 100.0
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 100.0
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 100.0
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 100.0
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 100.0
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 100.0
3o2r_A170 Ribonuclease III; structural genomics, center for 100.0
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 100.0
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 99.96
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.95
2yt4_A232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 99.95
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.94
2l3j_A236 Double-stranded RNA-specific editase 1; editing, d 99.9
3adj_A76 F21M12.9 protein; HYL1, miRNA processing, RNA bind 99.82
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 99.82
3adg_A73 F21M12.9 protein; HYL1, miRNA processing mechanism 99.8
1di2_A69 XLRBPA, double stranded RNA binding protein A; pro 99.8
2cpn_A89 TAR RNA-binding protein 2; double-stranded RNA bin 99.8
3adl_A88 RISC-loading complex subunit tarbp2; TRBP2, miRNA 99.79
1ekz_A76 DSRBDIII, maternal effect protein (staufen); struc 99.78
1uhz_A89 Staufen (RNA binding protein) homolog 2; DSRM, sta 99.78
2dix_A84 Interferon-inducible double stranded RNA- dependen 99.77
3llh_A90 RISC-loading complex subunit tarbp2; DSRBD, DSRM, 99.77
2khx_A85 Ribonuclease 3; drosha, RNA binding domain, hydrol 99.77
2l2n_A103 Hyponastic leave 1; DSRBD, miRNA, RNA binding prot 99.75
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 99.75
1x49_A97 Interferon-induced, double-stranded RNA- activated 99.74
1whq_A99 RNA helicase A; double-stranded RNA binding domain 99.74
1uil_A113 Double-stranded RNA-binding motif; structural geno 99.73
2b7t_A73 Double-stranded RNA-specific editase 1; RNA editin 99.73
1t4n_A94 Ribonuclease III; DSRBD, RNA-binding, hydrolase; N 99.71
1x48_A88 Interferon-induced, double-stranded RNA- activated 99.69
2dmy_A97 Spermatid perinuclear RNA-binding protein; DSRM do 99.69
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 99.69
2l33_A91 Interleukin enhancer-binding factor 3; structural 99.68
1t4o_A117 Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro 99.67
2ljh_A114 Double-stranded RNA-specific editase ADAR; DSRBD, 99.66
1whn_A128 Hypothetical protein riken cDNA 2310016K04; double 99.64
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 99.64
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 99.58
3adl_A88 RISC-loading complex subunit tarbp2; TRBP2, miRNA 99.57
3adj_A76 F21M12.9 protein; HYL1, miRNA processing, RNA bind 99.55
3p1x_A75 Interleukin enhancer-binding factor 3; structural 99.55
1di2_A69 XLRBPA, double stranded RNA binding protein A; pro 99.55
3adg_A73 F21M12.9 protein; HYL1, miRNA processing mechanism 99.54
3llh_A90 RISC-loading complex subunit tarbp2; DSRBD, DSRM, 99.54
2dix_A84 Interferon-inducible double stranded RNA- dependen 99.53
1x48_A88 Interferon-induced, double-stranded RNA- activated 99.53
2cpn_A89 TAR RNA-binding protein 2; double-stranded RNA bin 99.52
1x49_A97 Interferon-induced, double-stranded RNA- activated 99.52
1uhz_A89 Staufen (RNA binding protein) homolog 2; DSRM, sta 99.51
1ekz_A76 DSRBDIII, maternal effect protein (staufen); struc 99.5
2khx_A85 Ribonuclease 3; drosha, RNA binding domain, hydrol 99.48
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 99.47
2yt4_A 232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 99.47
1t4n_A94 Ribonuclease III; DSRBD, RNA-binding, hydrolase; N 99.45
1whq_A99 RNA helicase A; double-stranded RNA binding domain 99.45
2b7t_A73 Double-stranded RNA-specific editase 1; RNA editin 99.45
2l2n_A103 Hyponastic leave 1; DSRBD, miRNA, RNA binding prot 99.44
2l33_A91 Interleukin enhancer-binding factor 3; structural 99.41
1whn_A128 Hypothetical protein riken cDNA 2310016K04; double 99.41
1uil_A113 Double-stranded RNA-binding motif; structural geno 99.4
1t4o_A117 Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro 99.39
2dmy_A97 Spermatid perinuclear RNA-binding protein; DSRM do 99.38
2ljh_A114 Double-stranded RNA-specific editase ADAR; DSRBD, 99.33
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 99.28
2l3j_A 236 Double-stranded RNA-specific editase 1; editing, d 99.2
3p1x_A75 Interleukin enhancer-binding factor 3; structural 99.18
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 99.16
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 99.16
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 98.99
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 98.97
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 98.91
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 98.64
2kou_A102 Dicer-like protein 4; ATP-binding, endonuclease, h 97.29
2kou_A102 Dicer-like protein 4; ATP-binding, endonuclease, h 95.52
2db2_A119 KIAA0890 protein; DSRM domain, structural genomics 94.58
2db2_A119 KIAA0890 protein; DSRM domain, structural genomics 92.83
3htx_A 950 HEN1; HEN1, small RNA methyltransferase, protein-R 91.01
3htx_A 950 HEN1; HEN1, small RNA methyltransferase, protein-R 89.92
1ztd_A133 Hypothetical protein PFU-631545-001; structural ge 83.27
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
Probab=100.00  E-value=1.5e-50  Score=364.89  Aligned_cols=217  Identities=32%  Similarity=0.446  Sum_probs=194.0

Q ss_pred             HHHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHH
Q 017515           35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR  114 (370)
Q Consensus        35 ~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~  114 (370)
                      .+..|+++|||+|+|++||.+||||+|+....+|||||||||+||++++++|||.+||+.++|.|+.+|+.+||+.+|+.
T Consensus         3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~   82 (221)
T 2nug_A            3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL   82 (221)
T ss_dssp             CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHH
Confidence            35789999999999999999999999998767999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 017515          115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP  194 (370)
Q Consensus       115 ~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~  194 (370)
                      +|.++||++|++.++..                         ..+++++|+|||+|||||+|+|++.+.+++|+..++.|
T Consensus        83 ~a~~l~l~~~l~~~~~~-------------------------~~~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~  137 (221)
T 2nug_A           83 LAQKLELHKFIRIKRGK-------------------------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKE  137 (221)
T ss_dssp             HHHTTTGGGTCBSCTTC-------------------------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHcChHHhhccCCCc-------------------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999887432                         12899999999999999999999985566889988887


Q ss_pred             hhh-hhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCC
Q 017515          195 IVT-LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPV  273 (370)
Q Consensus       195 ~i~-~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~  273 (370)
                      .++ .....                                                                       
T Consensus       138 ~~~~~~~~~-----------------------------------------------------------------------  146 (221)
T 2nug_A          138 DILSAIKEG-----------------------------------------------------------------------  146 (221)
T ss_dssp             HHHHHHHTT-----------------------------------------------------------------------
T ss_pred             HHhhhhhcc-----------------------------------------------------------------------
Confidence            765 32110                                                                       


Q ss_pred             cccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHH
Q 017515          274 NCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN  353 (370)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~  353 (370)
                                    ....|||+.||||||++++..|.|.++.++||+|.+.|+|+|.|   +|. ++.|.|+|| |+|||
T Consensus       147 --------------~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v---~~~-~~~G~G~sk-K~Ae~  207 (221)
T 2nug_A          147 --------------RVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKI---KEY-RTLGEGKSK-KEAEQ  207 (221)
T ss_dssp             --------------CSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEE---TTE-EEEEEESSH-HHHHH
T ss_pred             --------------ccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEE---CCE-EEEEecCCH-HHHHH
Confidence                          01348999999999999999999999989999999999999999   688 999999999 99999


Q ss_pred             HHHHHHHHHHhhc
Q 017515          354 SAASMMLRALRES  366 (370)
Q Consensus       354 ~AA~~~l~~l~~~  366 (370)
                      .||+.||..|+++
T Consensus       208 ~AA~~AL~~L~~~  220 (221)
T 2nug_A          208 RAAEELIKLLEES  220 (221)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999999754
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Back     alignment and structure
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Back     alignment and structure
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Back     alignment and structure
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Back     alignment and structure
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Back     alignment and structure
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Back     alignment and structure
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Back     alignment and structure
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Back     alignment and structure
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Back     alignment and structure
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Back     alignment and structure
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Back     alignment and structure
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Back     alignment and structure
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Back     alignment and structure
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Back     alignment and structure
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Back     alignment and structure
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Back     alignment and structure
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Back     alignment and structure
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Back     alignment and structure
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Back     alignment and structure
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Back     alignment and structure
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Back     alignment and structure
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Back     alignment and structure
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Back     alignment and structure
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Back     alignment and structure
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Back     alignment and structure
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Back     alignment and structure
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Back     alignment and structure
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Back     alignment and structure
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Back     alignment and structure
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Back     alignment and structure
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Back     alignment and structure
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Back     alignment and structure
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d2nuga1148 a.149.1.1 (A:3-150) RNase III endonuclease catalyt 3e-19
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 3e-18
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 1e-12
d1o0wa269 d.50.1.1 (A:168-236) RNase III, C-terminal domain 4e-12
d1o0wa269 d.50.1.1 (A:168-236) RNase III, C-terminal domain 3e-04
d1ekza_76 d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros 6e-10
d1ekza_76 d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros 1e-04
d2nuga268 d.50.1.1 (A:151-218) RNase III, C-terminal domain 6e-10
d1di2a_69 d.50.1.1 (A:) Double-stranded RNA-binding protein 1e-09
d1x48a176 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p 1e-08
d1x48a176 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p 3e-08
d2b7va171 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R 1e-08
d1uila_113 d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { 1e-08
d1x47a185 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie 2e-08
d1x47a185 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie 2e-07
d1qu6a190 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p 2e-08
d1qu6a190 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p 0.004
d2dmya184 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin 3e-08
d1x49a185 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p 4e-08
d2b7ta173 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R 7e-08
d2cpna176 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu 7e-07
d2cpna176 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu 0.003
d2dixa173 d.50.1.1 (A:7-79) Interferon-inducible double stra 9e-07
d2dixa173 d.50.1.1 (A:7-79) Interferon-inducible double stra 8e-05
d1qu6a289 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase 2e-06
d1qu6a289 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase 5e-06
d1uhza_89 d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul 2e-06
d1uhza_89 d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul 0.001
d1whna_128 d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, 2e-06
d1whna_128 d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, 2e-04
d1t4oa_81 d.50.1.1 (A:) RNase III, C-terminal domain {Baker' 4e-05
d1whqa_99 d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { 4e-05
d1whqa_99 d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { 0.003
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 Back     information, alignment and structure

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 81.0 bits (199), Expect = 3e-19
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 25/158 (15%)

Query: 39  VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
           +E  + Y FK+K LLE+ALTH SY+    Y+ LEF+GDA +   + + +    P    G 
Sbjct: 5   LEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGF 64

Query: 99  LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
           LS L+A  IS E    +A K   +KF+R     +++ +                      
Sbjct: 65  LSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII--------------------- 103

Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
                D+ E++ AA+Y+D   D      +F  L +  +
Sbjct: 104 ----GDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 137
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 Back     information, alignment and structure
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 Back     information, alignment and structure
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 Back     information, alignment and structure
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 Back     information, alignment and structure
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 Back     information, alignment and structure
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73 Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 Back     information, alignment and structure
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 100.0
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 100.0
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 99.83
d1o0wa269 RNase III, C-terminal domain {Thermotoga maritima 99.8
d2dixa173 Interferon-inducible double stranded RNA-dependent 99.79
d1di2a_69 Double-stranded RNA-binding protein A, second dsRB 99.79
d2nuga268 RNase III, C-terminal domain {Aquifex aeolicus [Ta 99.79
d2cpna176 TAR RNA-binding protein 2 {Human (Homo sapiens) [T 99.79
d1ekza_76 Staufen, domain III {Fruit fly (Drosophila melanog 99.76
d1uhza_89 staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 99.75
d1qu6a190 dsRNA-dependent protein kinase pkr {Human (Homo sa 99.75
d1x49a185 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 99.75
d1uila_113 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 99.73
d1x48a176 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 99.72
d1whqa_99 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 99.72
d1x47a185 Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} 99.69
d1qu6a289 dsRNA-dependent protein kinase pkr {Human (Homo sa 99.67
d2b7va171 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 99.63
d1whna_128 tRNA-dihydrouridine synthase 2-like, Dus2l (231001 99.59
d1o0wa269 RNase III, C-terminal domain {Thermotoga maritima 99.57
d2dixa173 Interferon-inducible double stranded RNA-dependent 99.56
d1x48a176 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 99.56
d1t4oa_81 RNase III, C-terminal domain {Baker's yeast (Sacch 99.54
d1qu6a289 dsRNA-dependent protein kinase pkr {Human (Homo sa 99.54
d1x47a185 Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1x49a185 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 99.52
d2b7ta173 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 99.52
d1qu6a190 dsRNA-dependent protein kinase pkr {Human (Homo sa 99.51
d2nuga268 RNase III, C-terminal domain {Aquifex aeolicus [Ta 99.5
d2dmya184 Spermatid perinuclear RNA-binding protein {Human ( 99.49
d1di2a_69 Double-stranded RNA-binding protein A, second dsRB 99.48
d2cpna176 TAR RNA-binding protein 2 {Human (Homo sapiens) [T 99.48
d1whqa_99 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 99.47
d1ekza_76 Staufen, domain III {Fruit fly (Drosophila melanog 99.46
d1uhza_89 staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 99.44
d1uila_113 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 99.39
d1whna_128 tRNA-dihydrouridine synthase 2-like, Dus2l (231001 99.34
d2b7va171 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 99.3
d1t4oa_81 RNase III, C-terminal domain {Baker's yeast (Sacch 99.24
d2b7ta173 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 99.09
d2dmya184 Spermatid perinuclear RNA-binding protein {Human ( 99.0
d1ztda1124 Hypothetical protein PF0609 {Pyrococcus furiosus [ 80.6
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=2.7e-36  Score=252.61  Aligned_cols=137  Identities=32%  Similarity=0.459  Sum_probs=128.7

Q ss_pred             HHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHH
Q 017515           36 VFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARV  115 (370)
Q Consensus        36 ~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~  115 (370)
                      ++.||++|||+|+|++||.+||||+|+....+|||||||||+||+++++.|+|.+||+.++|.|+.+|+.+|||.+|+.+
T Consensus         2 l~~le~~igy~F~n~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La~~   81 (148)
T d2nuga1           2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLL   81 (148)
T ss_dssp             HHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHCCccCCHHHHHHHhcCcCcCCCcchHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHhhhH
Confidence            57899999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhh
Q 017515          116 AVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI  195 (370)
Q Consensus       116 a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~  195 (370)
                      |.++||++|++.++.                         ...+++++|+|||+|||||+|+|++...+++++.+++.+.
T Consensus        82 a~~lgl~~~i~~~~~-------------------------~~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~l~~~~  136 (148)
T d2nuga1          82 AQKLELHKFIRIKRG-------------------------KINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKED  136 (148)
T ss_dssp             HHTTTGGGTCBSCTT-------------------------CCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHhccc-------------------------cchhhhhHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Confidence            999999999987642                         3468999999999999999999999988889999999887


Q ss_pred             hh
Q 017515          196 VT  197 (370)
Q Consensus       196 i~  197 (370)
                      +.
T Consensus       137 i~  138 (148)
T d2nuga1         137 IL  138 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            75
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Back     information, alignment and structure
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure