Citrus Sinensis ID: 021200

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
cHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEcccccccccccccccEEcccccccEEEEEcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHccccc
cHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEccccEEEEEcccccccccEEcccEEEEEccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEEccccEEEEEcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEcccccccccccEcEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccc
MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKsllpkddaderdcilevragtggeeaSLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASaaisgvgvygklkfesgihrvqrvplteksgrvhtsaVSVAilpqadevdvrlrnedlridtyrsggsggqhanttnsavrvthiptgmtiSIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSrsklrseqigsgdrserirtynfpqgrvtdhrvgITHHAIsdmmegenLDIFIDALLLQQEMDAIASFGSTQ
mhliselrtkqkeidGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKsllpkddaderDCILevragtggeeasLFAVDVFKMYErysqkkgwkfeVVGVTESDLRGYKEasaaisgvgvygKLKFESGIHRvqrvplteksgrvhtsavsvailpqadevdvrLRNEDLRIdtyrsggsggqhanttnsavrvTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMErsrihlsrsklrseqigsgdrserirtynfpqgrvtdhrVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRlqslllksllPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNkakalkvlcaklYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
***************GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID*******************RVTHIPTGMTI*************KALKVLCAKLYEM**************************RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMD*********
*HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL**********QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDE*****NKAKALKVLCAKLY************************SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEM***A******
MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS********NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH****************SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL**************RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
A7HTY3355 Peptide chain release fac yes no 0.905 0.805 0.566 4e-97
A5V9C3360 Peptide chain release fac yes no 0.962 0.844 0.541 8e-97
A8GXI1357 Peptide chain release fac yes no 0.952 0.843 0.549 2e-96
A8GNQ4355 Peptide chain release fac yes no 0.955 0.850 0.536 5e-96
Q1RJT5357 Peptide chain release fac yes no 0.952 0.843 0.546 5e-96
A8GSC7355 Peptide chain release fac yes no 0.955 0.850 0.529 1e-95
B0BXT9355 Peptide chain release fac yes no 0.955 0.850 0.529 1e-95
Q2RWE1354 Peptide chain release fac yes no 0.968 0.864 0.541 3e-95
Q73IC2359 Peptide chain release fac yes no 0.965 0.849 0.522 4e-95
B3CL87363 Peptide chain release fac yes no 0.984 0.856 0.518 4e-95
>sp|A7HTY3|RF1_PARL1 Peptide chain release factor 1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=prfA PE=3 SV=1 Back     alignment and function desciption
 Score =  354 bits (909), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 162/286 (56%), Positives = 219/286 (76%)

Query: 28  KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 87
           +DM +MA EE+    +E  RL+  +   LLPKD AD+R+ ILEVRAGTGG+EA+LFA D+
Sbjct: 67  RDMAEMAKEEIARLNEELPRLEHEVQLMLLPKDAADDRNVILEVRAGTGGDEAALFAGDL 126

Query: 88  FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 147
           F+MYERY+  +GWK E++  +E ++ GYKE  A ISG GVY KLKFESG+HRVQRVP+TE
Sbjct: 127 FRMYERYASNQGWKVELIAASEGEMGGYKEIIAGISGPGVYAKLKFESGVHRVQRVPVTE 186

Query: 148 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 207
             GR+HTSA +VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR+TH+PTG
Sbjct: 187 GGGRIHTSAATVAVLPEAEEVDVEIEDKDLRIDVYRASGAGGQHVNKTESAVRITHLPTG 246

Query: 208 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 267
           + ++ QDE+SQH NKA+A+++L A++++ ER R+   RS  R  Q+GSGDRSERIRTYNF
Sbjct: 247 IVVAQQDEKSQHKNKARAMQILRARIFDAERERLDRERSAARKGQVGSGDRSERIRTYNF 306

Query: 268 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 313
           PQ RVTDHR+ +T H +  ++EGE L   IDAL+ + +   +A+ G
Sbjct: 307 PQSRVTDHRINLTLHKLDQVLEGEALGELIDALIAEDQAARLAAMG 352
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)
>sp|A5V9C3|RF1_SPHWW Peptide chain release factor 1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU 85-389) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8GNQ4|RF1_RICAH Peptide chain release factor 1 OS=Rickettsia akari (strain Hartford) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain RML369-C) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8GSC7|RF1_RICRS Peptide chain release factor 1 OS=Rickettsia rickettsii (strain Sheila Smith) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B0BXT9|RF1_RICRO Peptide chain release factor 1 OS=Rickettsia rickettsii (strain Iowa) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q2RWE1|RF1_RHORT Peptide chain release factor 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q73IC2|RF1_WOLPM Peptide chain release factor 1 OS=Wolbachia pipientis wMel GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B3CL87|RF1_WOLPP Peptide chain release factor 1 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=prfA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
255548277 422 peptide chain release factor, putative [ 0.993 0.744 0.872 1e-163
224130870358 predicted protein [Populus trichocarpa] 1.0 0.882 0.854 1e-155
225437801392 PREDICTED: peptide chain release factor 0.977 0.788 0.877 1e-154
449435146 426 PREDICTED: peptide chain release factor 0.987 0.732 0.833 1e-152
42569997413 Peptide chain release factor 1 [Arabidop 0.996 0.762 0.834 1e-150
356503962415 PREDICTED: peptide chain release factor 0.993 0.756 0.828 1e-148
297828437410 hypothetical protein ARALYDRAFT_904175 [ 0.996 0.768 0.828 1e-148
3522941395 putative peptide chain release factor [A 0.996 0.797 0.773 1e-146
218196470368 hypothetical protein OsI_19275 [Oryza sa 0.993 0.853 0.780 1e-144
48926665350 putative peptide chain release factor [O 0.993 0.897 0.780 1e-144
>gi|255548277|ref|XP_002515195.1| peptide chain release factor, putative [Ricinus communis] gi|223545675|gb|EEF47179.1| peptide chain release factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/314 (87%), Positives = 300/314 (95%)

Query: 3   LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDA 62
           LISELR+ QKEIDGL+SL+ EC EDK M+DMA EEL  AI+EEKRLQ++LLKSLLP DDA
Sbjct: 109 LISELRSIQKEIDGLRSLMAECPEDKHMIDMANEELNQAIEEEKRLQNVLLKSLLPTDDA 168

Query: 63  DERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 122
           DERDCILEVRAGTGGEEASLF++D+F+MYERYSQKKGWKFEVV +TESDL+GYKEASAAI
Sbjct: 169 DERDCILEVRAGTGGEEASLFSMDIFRMYERYSQKKGWKFEVVDITESDLKGYKEASAAI 228

Query: 123 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 182
           SG GV+GKLKFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTY
Sbjct: 229 SGAGVFGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTY 288

Query: 183 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 242
           RSGGSGGQHANTTNSAVRVTH+PTGMT+SIQDERSQHMNKAKALKVLCAKLYE+ERSRI 
Sbjct: 289 RSGGSGGQHANTTNSAVRVTHLPTGMTVSIQDERSQHMNKAKALKVLCAKLYEIERSRIQ 348

Query: 243 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 302
           +SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI++MM+GE+LD+FIDALLL
Sbjct: 349 MSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAINNMMQGESLDVFIDALLL 408

Query: 303 QQEMDAIASFGSTQ 316
           QQEMDAIASF   +
Sbjct: 409 QQEMDAIASFSCAE 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224130870|ref|XP_002320945.1| predicted protein [Populus trichocarpa] gi|222861718|gb|EEE99260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225437801|ref|XP_002274067.1| PREDICTED: peptide chain release factor 1 [Vitis vinifera] gi|297744098|emb|CBI37068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435146|ref|XP_004135356.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus] gi|449503299|ref|XP_004161933.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42569997|ref|NP_182225.3| Peptide chain release factor 1 [Arabidopsis thaliana] gi|124301088|gb|ABN04796.1| At2g47020 [Arabidopsis thaliana] gi|330255695|gb|AEC10789.1| Peptide chain release factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503962|ref|XP_003520768.1| PREDICTED: peptide chain release factor 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297828437|ref|XP_002882101.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] gi|297327940|gb|EFH58360.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3522941|gb|AAC34223.1| putative peptide chain release factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218196470|gb|EEC78897.1| hypothetical protein OsI_19275 [Oryza sativa Indica Group] gi|222630945|gb|EEE63077.1| hypothetical protein OsJ_17885 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|48926665|gb|AAT47454.1| putative peptide chain release factor [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2041409413 AT2G47020 [Arabidopsis thalian 0.996 0.762 0.774 2.5e-129
TIGR_CMR|ECH_0597359 ECH_0597 "peptide chain releas 0.971 0.855 0.475 1.9e-76
TIGR_CMR|APH_0420359 APH_0420 "peptide chain releas 0.977 0.860 0.469 5.7e-75
TIGR_CMR|NSE_0406367 NSE_0406 "peptide chain releas 0.977 0.841 0.456 6.5e-74
TIGR_CMR|SPO_2461351 SPO_2461 "peptide chain releas 0.971 0.874 0.466 7.5e-73
UNIPROTKB|P0A7I0360 prfA "peptide chain release fa 0.917 0.805 0.465 8.6e-72
UNIPROTKB|Q9KQ25362 prfA "Peptide chain release fa 0.901 0.787 0.463 2.9e-71
TIGR_CMR|VC_2179362 VC_2179 "peptide chain release 0.901 0.787 0.463 2.9e-71
TIGR_CMR|CHY_2563358 CHY_2563 "peptide chain releas 0.955 0.843 0.450 7.7e-71
TIGR_CMR|CBU_1965361 CBU_1965 "peptide chain releas 0.955 0.836 0.444 3.3e-70
TAIR|locus:2041409 AT2G47020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 244/315 (77%), Positives = 273/315 (86%)

Query:     1 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKD 60
             M LI++LR KQKEIDGLKSL+ E S+DKDMLD+A  EL  A++EEKR          PKD
Sbjct:    98 MLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPKD 157

Query:    61 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 120
             +ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKKGWKF++V +TESD++GYKEASA
Sbjct:   158 EADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASA 217

Query:   121 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 180
             AI G  VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQADEVDV+LRNEDLRID
Sbjct:   218 AICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRID 277

Query:   181 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNXXXXXXXXXXXXYEMERSR 240
             TYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHMN            YE+ER R
Sbjct:   278 TYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLR 337

Query:   241 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 300
             I  SRSKLRS+QIGSGDRS RIRTYNFPQGRVTDHRVGITHHAI DMM+GENLD+FIDAL
Sbjct:   338 IQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAIEDMMQGENLDMFIDAL 397

Query:   301 LLQQEMDAIASFGST 315
             LL+QEMDAIASF ST
Sbjct:   398 LLRQEMDAIASFSST 412
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006415 "translational termination" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
TIGR_CMR|ECH_0597 ECH_0597 "peptide chain release factor 1" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0420 APH_0420 "peptide chain release factor 1" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0406 NSE_0406 "peptide chain release factor 1" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2461 SPO_2461 "peptide chain release factor 1" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7I0 prfA "peptide chain release factor RF1" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQ25 prfA "Peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2179 VC_2179 "peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2563 CHY_2563 "peptide chain release factor 1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1965 CBU_1965 "peptide chain release factor 1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8GXI1RF1_RICB8No assigned EC number0.54960.95250.8431yesno
Q6G5T7RF1_BARHENo assigned EC number0.54480.92720.8161yesno
B3CQD1RF1_ORITINo assigned EC number0.50.97460.8579yesno
Q98G93RF1_RHILONo assigned EC number0.52390.96510.8495yesno
Q2RWE1RF1_RHORTNo assigned EC number0.54190.96830.8644yesno
B0CIC3RF1_BRUSINo assigned EC number0.53350.96510.8495yesno
C4K0C9RF1_RICPUNo assigned EC number0.52980.95560.8507yesno
A7HTY3RF1_PARL1No assigned EC number0.56640.90500.8056yesno
Q3YS23RF1_EHRCJNo assigned EC number0.50640.98730.8690yesno
Q4ULG0RF1_RICFENo assigned EC number0.52980.95560.8507yesno
B3CL87RF1_WOLPPNo assigned EC number0.51880.98410.8567yesno
Q5PAH2RF1_ANAMMNo assigned EC number0.52860.99360.8746yesno
Q68WK7RF1_RICTYNo assigned EC number0.53310.95560.8507yesno
B9KIV2RF1_ANAMFNo assigned EC number0.52860.99360.8746yesno
Q5NMC7RF1_ZYMMONo assigned EC number0.55050.90820.8016yesno
Q8YJ95RF1_BRUMENo assigned EC number0.53990.96510.8495yesno
A5V9C3RF1_SPHWWNo assigned EC number0.54190.96200.8444yesno
Q8U8B8RF1_AGRT5No assigned EC number0.52050.98730.8666yesno
A1URS5RF1_BARBKNo assigned EC number0.53460.94300.8300yesno
Q5GSS8RF1_WOLTRNo assigned EC number0.52540.97150.8551yesno
C3PNN0RF1_RICAENo assigned EC number0.52640.95560.8507yesno
A8GSC7RF1_RICRSNo assigned EC number0.52980.95560.8507yesno
Q11E04RF1_MESSBNo assigned EC number0.51740.96510.8495yesno
Q92MK5RF1_RHIMENo assigned EC number0.52680.98730.8666yesno
A6WXQ3RF1_OCHA4No assigned EC number0.53990.96510.8543yesno
A6UCF2RF1_SINMWNo assigned EC number0.51700.96830.85yesno
Q2K3T1RF1_RHIECNo assigned EC number0.52360.98730.8690yesno
Q9ZD21RF1_RICPRNo assigned EC number0.52640.95560.8507yesno
B0BXT9RF1_RICRONo assigned EC number0.52980.95560.8507yesno
A8GNQ4RF1_RICAHNo assigned EC number0.53640.95560.8507yesno
Q1RJT5RF1_RICBRNo assigned EC number0.54630.95250.8431yesno
B9JT13RF1_AGRVSNo assigned EC number0.54630.96510.8495yesno
B2S825RF1_BRUA1No assigned EC number0.53670.96510.8495yesno
Q8FYK3RF1_BRUSUNo assigned EC number0.53670.96510.8495yesno
A9M8K5RF1_BRUC2No assigned EC number0.53670.96510.8495yesno
Q2GBN7RF1_NOVADNo assigned EC number0.51790.95560.8531yesno
A8EYR1RF1_RICCKNo assigned EC number0.52110.97150.8647yesno
Q1GPK3RF1_SPHALNo assigned EC number0.52900.92400.8225yesno
Q3SVP7RF1_NITWNNo assigned EC number0.51440.97780.8631yesno
Q2YLN8RF1_BRUA2No assigned EC number0.53670.96510.8495yesno
Q73IC2RF1_WOLPMNo assigned EC number0.52210.96510.8495yesno
Q57B22RF1_BRUABNo assigned EC number0.53670.96510.8495yesno
Q2W6V3RF1_MAGSANo assigned EC number0.56590.91130.8135yesno
Q92HK9RF1_RICCNNo assigned EC number0.52980.95560.8507yesno
Q1MBB2RF1_RHIL3No assigned EC number0.52050.98730.8690yesno
Q2GGM5RF1_EHRCRNo assigned EC number0.50960.98730.8690yesno
B8EI32RF1_METSBNo assigned EC number0.53330.93030.8166yesno
A8F1S1RF1_RICM5No assigned EC number0.52980.95560.8365yesno
B5ZRR4RF1_RHILWNo assigned EC number0.52050.98730.8690yesno
C0RFB5RF1_BRUMBNo assigned EC number0.53990.96510.8495yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XIV000547
hypothetical protein (358 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0136002401
hypothetical protein (360 aa)
•   • • 0.822
gw1.VI.1832.1
annotation not avaliable (210 aa)
•     • 0.702
estExt_Genewise1_v1.C_LG_II0778
hypothetical protein (286 aa)
• •   • 0.699
fgenesh4_pm.C_LG_XIV000511
hypothetical protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to [...] (323 aa)
      • 0.689
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
  •   • 0.676
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
• • • • 0.671
estExt_Genewise1_v1.C_LG_I8678
hypothetical protein; One of the essential components for the initiation of protein synthesis. [...] (588 aa)
  •   • 0.644
gw1.I.2958.1
hypothetical protein (209 aa)
• •   • 0.616
estExt_Genewise1_v1.C_1270270
hypothetical protein (693 aa)
  •   • 0.594
fgenesh4_pg.C_scaffold_2755000002
Predicted protein (247 aa)
•       0.586

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 1e-164
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 1e-152
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 1e-134
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 5e-78
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 1e-71
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 1e-59
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 3e-57
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 5e-55
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 2e-53
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 3e-52
pfam00472114 pfam00472, RF-1, RF-1 domain 1e-51
smart00937116 smart00937, PCRF, This domain is found in peptide 5e-45
pfam03462115 pfam03462, PCRF, PCRF domain 6e-41
PRK08179200 PRK08179, prfH, peptide chain release factor-like 6e-19
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 6e-18
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 0.001
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information 
 Score =  459 bits (1185), Expect = e-164
 Identities = 168/308 (54%), Positives = 231/308 (75%), Gaps = 2/308 (0%)

Query: 6   ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 65
           E +  Q++++  K ++ E   D +M +MA EEL    +  + L+  L   LLPKD  D++
Sbjct: 53  EYKQAQEDLEEAKEML-EEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDK 111

Query: 66  DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 125
           + ILE+RAGTGG+EA+LFA D+F+MY RY++++GWK E++  +E +L GYKE  A ISG 
Sbjct: 112 NVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGD 171

Query: 126 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSG 185
           GVY KLKFESG+HRVQRVP TE  GR+HTSA +VA+LP+A+EV+V +  +DLRIDT+RS 
Sbjct: 172 GVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSS 231

Query: 186 GSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSR 245
           G+GGQH NTT+SAVR+TH+PTG+ +  QDERSQH NKAKA+KVL A+LY+ ER +     
Sbjct: 232 GAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEE 291

Query: 246 SKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 305
           +  R  Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++MEG+ LD  IDAL+ + +
Sbjct: 292 AATRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGD-LDELIDALIAEDQ 350

Query: 306 MDAIASFG 313
            + +A+ G
Sbjct: 351 AEKLAALG 358

Length = 359
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 100.0
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 100.0
PRK09256138 hypothetical protein; Provisional 99.87
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.62
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-114  Score=822.05  Aligned_cols=313  Identities=53%  Similarity=0.869  Sum_probs=305.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHH
Q 021200            1 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA   80 (316)
Q Consensus         1 ~~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea   80 (316)
                      +.+|++|+++..+++++++|+.+. .|+||++||++|+..++++++.|+++|..+|||+||.|+.||||||+||+||+||
T Consensus        49 v~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEA  127 (363)
T COG0216          49 VEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEA  127 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHH
Confidence            368999999999999999999873 7999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEE
Q 021200           81 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA  160 (316)
Q Consensus        81 ~~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~  160 (316)
                      ++||++||+||.+||+.+||++++++.++++.||||.+++.|+|.+||+.||||+|||||||||.|+++||+|||+|+|+
T Consensus       128 alFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVa  207 (363)
T COG0216         128 ALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVA  207 (363)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCcc-ccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHH
Q 021200          161 ILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERS  239 (316)
Q Consensus       161 vlP~~~~~-~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~  239 (316)
                      |||++++. ++.|+|+||+|+||||||+||||||||+|||||||+||||+|+||++||||+||++||+.|++||++++.+
T Consensus       208 VlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~  287 (363)
T COG0216         208 VLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQ  287 (363)
T ss_pred             eccCCCcccccccChHHceeeeeecCCCCCCCcCccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999875 79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHHHHHHHHcccC
Q 021200          240 RIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS  314 (316)
Q Consensus       240 ~~~~~~~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~~~~~~~~~~~  314 (316)
                      ++.++.++.|++|+|+|+||++|||||||||||||||||+++++|+.||+|.+||++|++|+.++++++|+++..
T Consensus       288 ~~~~~~~~~RksqVGSGDRSErIRTYNfPQnRVTDHRI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~~  362 (363)
T COG0216         288 KAQAEEASERKSQVGSGDRSERIRTYNFPQNRVTDHRINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELGE  362 (363)
T ss_pred             HHHHHHHHHHHHhcCCCchhhhhhccCCCCCcccchhcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999994379999999999999999998764

>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 2e-76
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 1e-69
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 2e-69
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 9e-68
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 1e-57
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 5e-42
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 9e-42
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 6e-41
2wh1_Y351 Insights Into Translational Termination From The St 3e-33
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 3e-33
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 3e-33
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 3e-33
3f1e_X378 Crystal Structure Of A Translation Termination Comp 4e-33
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure 
Iteration: 1

 Score =  281 bits (720), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/288 (47%), Positives = 197/288 (68%), Gaps = 2/288 (0%)
Query: 26  EDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGGEEASLFAV 85
           +D +M +MA +EL  A ++ ++          PKD  DER+  LEVRAGTGG+EA+LFA 
Sbjct: 70  DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAG 129
Query: 86  DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 145
           D+F+MY RY++ + W+ E++  +E +  GYKE  A ISG GVYG+LKFESG HRVQRVP 
Sbjct: 130 DLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPA 189
Query: 146 TEKSGRVHTSAVSVAILPQADEVDVRLRNE-DLRIDTYRSGGSGGQHANTTNSAVRVTHI 204
           TE  GR+HTSA +VA++P+  + ++   N  DLRIDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 190 TESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHL 249
Query: 205 PTGMTISIQDERSQHMNXXXXXXXXXXXXYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 264
           PTG+ +  QDERSQH N            +  E ++   + +  R   +GSGDRS+R RT
Sbjct: 250 PTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRT 309
Query: 265 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 312
           YNFPQGRVTDHR+ +T + + ++MEG+ LD+ I+ ++ + + D +A+ 
Sbjct: 310 YNFPQGRVTDHRINLTLYRLDEVMEGK-LDMLIEPIIQEHQADQLAAL 356
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 1e-162
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 1e-159
2b3t_B360 RF-1, peptide chain release factor 1; translation 1e-158
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 1e-154
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 4e-86
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 5e-83
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 7e-51
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 5e-14
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 1e-13
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
 Score =  455 bits (1173), Expect = e-162
 Identities = 128/313 (40%), Positives = 200/313 (63%), Gaps = 1/313 (0%)

Query: 1   MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKD 60
           + +  E +   + I   + +I + S D ++ +MA EEL  +   ++  +  L   LLPKD
Sbjct: 59  VAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKD 118

Query: 61  DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 120
             D+++ ILE+R   GG+EA+LFA D+  MY++Y++ +GWKFEV+  + + + G KE  A
Sbjct: 119 PNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVA 178

Query: 121 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 180
            +SG  VY KLK+ESG HRVQRVP+TE  GRVHTS  +V ++P+ +EV+  +  +DLR+D
Sbjct: 179 MVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVD 238

Query: 181 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR 240
            Y + G+GGQ+ N   +AVR+ H+PT + + +Q+ER+Q  N+ KA+K++ A++ +     
Sbjct: 239 IYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQI 298

Query: 241 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 300
               +   R   +G+GDRSERIRTYNFPQ RVTDHR+G+T   +  ++ G+ LD  IDAL
Sbjct: 299 AQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGK-LDEVIDAL 357

Query: 301 LLQQEMDAIASFG 313
           +L  +   +    
Sbjct: 358 ILYDQTQKLEELN 370
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.94
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.93
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.91
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
Probab=100.00  E-value=6.3e-105  Score=771.86  Aligned_cols=312  Identities=41%  Similarity=0.726  Sum_probs=285.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHH
Q 021200            1 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA   80 (316)
Q Consensus         1 ~~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea   80 (316)
                      ++.|++|++..+++.++.+|+.+.++|+||+++|++|+..++++++.++.+|...|||++|+|.++|+|||+||+||+||
T Consensus        59 v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA  138 (371)
T 1zbt_A           59 VAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEA  138 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHH
Confidence            35789999999999999999864345999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEE
Q 021200           81 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA  160 (316)
Q Consensus        81 ~~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~  160 (316)
                      ++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++|||+|++|+|||||||||+|+++||+|||||+|+
T Consensus       139 ~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~  218 (371)
T 1zbt_A          139 ALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVL  218 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCccccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 021200          161 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR  240 (316)
Q Consensus       161 vlP~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~  240 (316)
                      |+|+++++++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.++
T Consensus       219 V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~  298 (371)
T 1zbt_A          219 VMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQI  298 (371)
T ss_dssp             EEECCCGGGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccccccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999989999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHHHHHHHHccc
Q 021200          241 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG  313 (316)
Q Consensus       241 ~~~~~~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~~~~~~~~~~  313 (316)
                      +.++.++.|++++++|+||++||||||||+||||||||++++||++||+| +||+||++++.++++++|+++.
T Consensus       299 ~~~~~~~~r~~~ig~g~Rse~IRtYnf~q~rVtDhRtg~~~~~l~~VldG-dLd~~I~a~l~~~~~~~l~~~~  370 (371)
T 1zbt_A          299 AQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSG-KLDEVIDALILYDQTQKLEELN  370 (371)
T ss_dssp             HHHHTCC----CCSCSCTTSEEEEEETTTTEEEETTTTEEESCHHHHHTT-CCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhccccccCCCeeeEECCCCEeeecccCCeECChHHHhCC-cHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999 6999999999999999998763
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 4e-74
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 4e-68
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 9e-66
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 4e-16
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  230 bits (587), Expect = 4e-74
 Identities = 103/306 (33%), Positives = 167/306 (54%), Gaps = 8/306 (2%)

Query: 4   ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEE-----LCLAIDEEKRLQSLLLKSLLP 58
            S L      +D +K  + + S   ++   A +E         +D  +   + L    + 
Sbjct: 57  RSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMF 116

Query: 59  KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 118
             + D  DC L+++AG+GG EA  +A  + +MY R+++ +G+K E++  +E ++ G K  
Sbjct: 117 SGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSV 176

Query: 119 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDL 177
           +  ISG   YG L+ E+G+HR+ R    +  GR HTS  S  + P+ D+ +D+ +   DL
Sbjct: 177 TIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADL 236

Query: 178 RIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEME 237
           RID YR+ G+GGQH N T SAVR+THIPTG+    Q++RSQH NK +A+K + AKLYE+E
Sbjct: 237 RIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVE 296

Query: 238 RSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFI 297
             + +  +  +   +   G    +IR+Y     R+ D R G+       +++G  LD FI
Sbjct: 297 MQKKNAEKQAMEDNKSDIG-WGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGS-LDQFI 354

Query: 298 DALLLQ 303
           +A L  
Sbjct: 355 EASLKA 360
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.84
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-104  Score=766.57  Aligned_cols=304  Identities=49%  Similarity=0.822  Sum_probs=247.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHHH
Q 021200            2 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS   81 (316)
Q Consensus         2 ~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea~   81 (316)
                      +.|+.|.++.++++++.+|+    +|+||.++|++|+..+...++.+++++...|+|++|+|.++|+|||+||+||+||+
T Consensus        40 ~~~~~l~~~~~dleel~eL~----eD~E~~ela~eEl~el~~~l~~le~~l~~~ll~~~~~D~~~aileI~aGaGG~EA~  115 (344)
T d2b3tb1          40 RCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAA  115 (344)
T ss_dssp             HHHHHHTTCC---------------------------------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh----CCcchHHHHHHhhhhhhhhhhHHHHHHHHHhcccccccccceEEEEecccchHHHH
Confidence            56777888888888888887    47899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEEE
Q 021200           82 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI  161 (316)
Q Consensus        82 ~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~v  161 (316)
                      +||+||++||.+||+++||++++++.++++.+|||+|++.|+|++|||+|++|+|||||||||+|+++||+||||++|.|
T Consensus       116 dwA~~L~rMY~r~ae~~g~k~evl~~~~ge~~Gik~~~~~i~G~~ay~~lk~E~GvHRvqRip~~~~~~r~hts~~~v~v  195 (344)
T d2b3tb1         116 LFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAV  195 (344)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCcceecccccccCCceeEEEEEEEcCcccceeeEeecceEEEeecccccccccccceeeEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCc-cccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 021200          162 LPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR  240 (316)
Q Consensus       162 lP~~~~-~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~  240 (316)
                      +|.+++ ..+.|+|+||+|+|||||||||||||||+|||||||+||||+|.||++||||+||+.||++|++||++.+.++
T Consensus       196 ~p~~~~~~~~~i~~~dl~i~~~rssg~GGQ~vnkt~sAVRi~H~ptGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~~  275 (344)
T d2b3tb1         196 MPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAK  275 (344)
T ss_dssp             CBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred             ecccccccccccCcccceEEEecCCCccccchhhhhceeEEEEcCCceEEEccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999865 4568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHHHHHHHH
Q 021200          241 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA  310 (316)
Q Consensus       241 ~~~~~~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~~~~~~~  310 (316)
                      +.++.++.|++|+|+++||++||||||||+||||||||++++||+.||+| +||+||++|+.+.++++|+
T Consensus       276 ~~~~~~~~r~~~~~~~~r~~~iRtY~~p~~~v~DhR~~~~~~~~~~vl~G-~ld~~i~~~~~~~~~~~l~  344 (344)
T d2b3tb1         276 RQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEG-KLDMLIEPIIQEHQADQLA  344 (344)
T ss_dssp             CC------CCC-------CCEEEEEETTTTEEEEGGGTEEESCHHHHHHT-CTHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcccccccccCceEeeecCCCccceeccCCeeCChhHhhCC-ChHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999 6999999999999999874
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure