Citrus Sinensis ID: 021995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MAMKRVASSAINAFASSGFLRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccEEEEEccccccHHHHccccccEEEEEEEccccccccccHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccHHHHHHcccEEcccHHHHcccccEEEEcccccHHHcccccHHHHHccccccEEEEccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcccEEEEEccccccHHHHHccccEEEEEcccccccccccccHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHccEEEEEccccccHHHHHHHcEEEcccHHHHHHHccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHcccEEEEEEccccccccccccHHHccccEccccccHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHEEEccccEcHHcc
Coil and Loop (DISEMBL)
MAMKRVASSAINAFAssgflrsssrfsrhyassgskkIVGVFYkgneyasmnPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNflpghhqviSGEWNVAGVAYRaydlegktvgtvgcgrIGKLLLQRlkpfncnllyhdrvkmdpqleketgakfeedldtmlpkcdivvvntpltektrgmfdKDRIAKMKKGVLIVNNARGAIMDTQAVVDACssghiagysgdvwnpqpapkdhpwrympnqamtphvsgttiDAQLRYAAGVKDMLDryfkgedfpvqnYIVKAgelapqyr
Flexible Loop (DISEMBL)
MAMKRVASSAINafassgflrssSRFSRhyassgskkIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFeedldtmlpkcdivvvntpltektrgmfdkdriakMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKgedfpvqnYIVKAgelapqyr
Low Complexity Region (SEG)
MAMKRVASSAINAfassgflrsssrfsrhyassgsKKIVGVFYKGNEYASMNPNFlaaaaagltvaevtgSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Disordered region (IsUnstruct)
***********************************KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM***********FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP*******PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG*******
Disordered Region (DISOPRED)
******A*SAINAFASSGFLRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG*******
Disordered Region (DISEMBL)
********SAINAFASSGFLRSSS*********GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Disordered Region (DISPRO)
MAMKRVASSAINAFASSGFLRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMKRVASSAINAFASSGFLRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q07511	381	Formate dehydrogenase, mi	N/A	no	0.782	0.624	0.893	1e-132
Q9SXP2	376	Formate dehydrogenase 1,	yes	no	0.796	0.643	0.868	1e-130
Q67U69	378	Formate dehydrogenase 2,	no	no	0.779	0.626	0.847	1e-128
Q9ZRI8	377	Formate dehydrogenase, mi	N/A	no	0.799	0.644	0.855	1e-128
Q9S7E4	384	Formate dehydrogenase, mi	yes	no	0.799	0.632	0.843	1e-125
Q03134	365	Probable formate dehydrog	yes	no	0.796	0.663	0.554	1e-74
Q07103	375	Formate dehydrogenase OS=	N/A	no	0.796	0.645	0.542	1e-66
O13437	364	Formate dehydrogenase OS=	N/A	no	0.855	0.714	0.475	4e-66
P33160	401	Formate dehydrogenase OS=	N/A	no	0.782	0.593	0.491	2e-62
P33677	362	Formate dehydrogenase OS=	N/A	no	0.815	0.685	0.454	1e-61

>sp|Q07511|FDH_SOLTU Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2

 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/243 (89%), Positives = 231/243 (95%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVG
Sbjct: 139 GLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVG 198

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIG+LLLQRLKPFNCNLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NT
Sbjct: 199 TVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINT 258

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKT+GMFDK+RIAK+KKGVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPA
Sbjct: 259 PLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPA 318

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAP
Sbjct: 319 PKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAP 378

Query: 302 QYR 304
           QYR
Sbjct: 379 QYR 381

Involved in formate-dependent oxygen uptake coupled to ATP synthesis.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 2

>sp|Q9SXP2|FDH1_ORYSJ Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2

 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 211/243 (86%), Positives = 230/243 (94%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVG
Sbjct: 134 GLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVG 193

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIG+LLLQRLKPFNCNLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NT
Sbjct: 194 TVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINT 253

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKTRGMF+K+RIAKMKKGV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPA
Sbjct: 254 PLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPA 313

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA 
Sbjct: 314 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLAS 373

Query: 302 QYR 304
           QY+
Sbjct: 374 QYQ 376

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q67U69|FDH2_ORYSJ Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 206/243 (84%), Positives = 228/243 (93%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAE+TGSN VSVAED+LMRIL+L+RNFLPGHHQ+++GEWNVAG+A+R YDLEGKTVG
Sbjct: 136 GLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVG 195

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIG+LLLQRLKPFNCNL+YHDRVK+DP+LEKE GAK+EEDLD MLPKCD+VV+N 
Sbjct: 196 TVGAGRIGRLLLQRLKPFNCNLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINM 255

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKTRGMF+K+RIAKMKKGV IVNNARGAIMDTQAV DAC+SGH+AGY GDVW PQPA
Sbjct: 256 PLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPA 315

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPN AMTPH SGTTID QLRYAAGVKDMLDRYFKGEDFP QNYIVKAG+LA 
Sbjct: 316 PKDHPWRYMPNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLAS 375

Query: 302 QYR 304
           QY+
Sbjct: 376 QYQ 378

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9ZRI8|FDH_HORVU Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 208/243 (85%), Positives = 229/243 (94%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVA VTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+A+RAYDLEGKTVG
Sbjct: 135 GLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVG 194

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GR G+LLLQRLKPFNCNLLYHDR++++P+LEKE GAKFEEDLD MLPKCD+VV+NT
Sbjct: 195 TVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINT 254

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKTRGMF+K++IAKMKKGV+IVNNARGAIMDTQAV DACSSGHIAGY GDVW PQPA
Sbjct: 255 PLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPA 314

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGE+FPV+NYIVK GELA 
Sbjct: 315 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELAS 374

Query: 302 QYR 304
           QY+
Sbjct: 375 QYK 377

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9S7E4|FDH_ARATH Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1

 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 205/243 (84%), Positives = 226/243 (93%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+G
Sbjct: 142 GLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIG 201

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIGKLLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N 
Sbjct: 202 TVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINM 261

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKTRGMF+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPA
Sbjct: 262 PLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPA 321

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAP
Sbjct: 322 PKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAP 381

Query: 302 QYR 304
           QYR
Sbjct: 382 QYR 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q03134|FDH_EMENI Probable formate dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aciA PE=2 SV=3

 Score =  280 bits (715), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/249 (55%), Positives = 180/249 (72%), Gaps = 7/249 (2%)

Query: 61  AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTV 120
            G+TVAEVTGSNVVSVAE  +M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K V
Sbjct: 109 GGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVV 168

Query: 121 GTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179
           GTVG GRIG+ +L+RLKPF+C  LLY+D   + P++EKE GA+  + L+ M+ +CD+V +
Sbjct: 169 GTVGVGRIGERVLRRLKPFDCKELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTI 228

Query: 180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 239
           N PL EKTRG+F+K+ I+KMK G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQ
Sbjct: 229 NCPLHEKTRGLFNKELISKMKPGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQ 288

Query: 240 PAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYI 293
           PAPK+HP RY  +      A  PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ I
Sbjct: 289 PAPKEHPLRYAEHPWGGGNATVPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLI 348

Query: 294 VKAGELAPQ 302
           V  G+ A +
Sbjct: 349 VHGGDYATK 357

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q07103|FDH_NEUCR Formate dehydrogenase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fdh PE=2 SV=1

 Score =  253 bits (645), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/249 (54%), Positives = 176/249 (70%), Gaps = 7/249 (2%)

Query: 61  AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTV 120
            G+TVAEVTGSNVVSVAE  LM IL+LVRNF+P H Q+  G W+VA  A   +DLEGK V
Sbjct: 109 GGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVV 168

Query: 121 GTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179
           GTVG GRIG+ +L+RLKPF+C  LLY+D   +  + E E G +   DL+ ML +CD+V +
Sbjct: 169 GTVGVGRIGERVLRRLKPFDCKELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTI 228

Query: 180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 239
           N PL EKT+G+F+K+ I+KMKKG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQ
Sbjct: 229 NCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQ 288

Query: 240 PAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYI 293
           PAP+DHP RY  N      AM PH+SGT++DAQ RYAAG K +++ Y  G+ D+  ++ I
Sbjct: 289 PAPQDHPLRYAKNPFGGGNAMVPHMSGTSLDAQKRYAAGTKAIIESYLSGKHDYRPEDLI 348

Query: 294 VKAGELAPQ 302
           V  G+ A +
Sbjct: 349 VYGGDYATK 357

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|O13437|FDH_CANBO Formate dehydrogenase OS=Candida boidinii GN=FDH1 PE=1 SV=1

 Score =  251 bits (642), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/269 (47%), Positives = 182/269 (67%), Gaps = 9/269 (3%)

Query: 37  KIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH 96
           K+V V   G+++  ++  ++      ++V EVTGSNVVSVAE  +M +L+LVRNF+P H 
Sbjct: 86  KLVVVAGVGSDHIDLD--YINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHE 143

Query: 97  QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL 155
           Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN   LLY+D   +  + 
Sbjct: 144 QIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNPKELLYYDYQALPKEA 203

Query: 156 EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 215
           E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K KKG  +VN ARGAI  
Sbjct: 204 EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICV 263

Query: 216 TQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRY 270
            + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AMTPH SGTT+DAQ RY
Sbjct: 264 AEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRY 323

Query: 271 AAGVKDMLDRYFKGE-DFPVQNYIVKAGE 298
           A G K++L+ +F G+ D+  Q+ I+  GE
Sbjct: 324 AEGTKNILESFFTGKFDYRPQDIILLNGE 352

NAD(+)-dependent enzyme which catalyzes the final step in the menthanol oxidation pathway. Involved in detoxification of formate.

Candida boidinii (taxid: 5477)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33160|FDH_PSESR Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 151/238 (63%)

Query: 63  LTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGT 122
           +TVAEVT  N +SVAE  +M IL LVRN+LP H     G WN+A     AYDLE   VGT
Sbjct: 138 VTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGT 197

Query: 123 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 182
           V  GRIG  +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N P
Sbjct: 198 VAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCP 257

Query: 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 242
           L  +T  M + + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAP
Sbjct: 258 LHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAP 317

Query: 243 KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
           KDHPWR MP   MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 318 KDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375

Pseudomonas sp. (strain 101) (taxid: 33067)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33677|FDH_PICAN Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/255 (45%), Positives = 169/255 (66%), Gaps = 7/255 (2%)

Query: 51  MNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY 110
           ++ +++  +   ++V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+ISG WNVA +A 
Sbjct: 98  IDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIISGGWNVAEIAK 157

Query: 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDT 169
            ++D+EGK + T+G GRIG  +L+RL  FN   LLY+D   +  + E++ GA+   D+  
Sbjct: 158 DSFDIEGKVIATIGAGRIGYRVLERLVAFNPKELLYYDYQSLSKEAEEKVGARRVHDIKE 217

Query: 170 MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229
           ++ + DIV +N PL   ++G+ + + +   KKG  +VN ARGAI   + V  A  SG + 
Sbjct: 218 LVAQADIVTINCPLHAGSKGLVNAELLKHFKKGAWLVNTARGAICVAEDVAAAVKSGQLR 277

Query: 230 GYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
           GY GDVW PQPAPKDHPWR M N+     AMTPH SG+ IDAQ+RYA G K++L+ +F  
Sbjct: 278 GYGGDVWFPQPAPKDHPWRSMANKYGAGNAMTPHYSGSVIDAQVRYAQGTKNILESFFTQ 337

Query: 285 E-DFPVQNYIVKAGE 298
           + D+  Q+ I+  G+
Sbjct: 338 KFDYRPQDIILLNGK 352

Pichia angusta (taxid: 870730)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
255552590	386	formate dehydrogenase, putative [Ricinus	0.825	0.650	0.880	1e-133
225452472	383	PREDICTED: formate dehydrogenase, mitoch	0.786	0.624	0.893	1e-132
147810156	383	hypothetical protein VITISV_036417 [Viti	0.786	0.624	0.893	1e-131
224129102	387	formate dehydrogenase [Populus trichocar	0.786	0.617	0.900	1e-131
449446660	384	PREDICTED: formate dehydrogenase, mitoch	0.799	0.632	0.876	1e-130
26454627	381	RecName: Full=Formate dehydrogenase, mit	0.782	0.624	0.893	1e-130
211970690	386	formate dehydrogenase [Lotus japonicus]	0.792	0.624	0.876	1e-130
350538487	381	formate dehydrogenase [Solanum lycopersi	0.782	0.624	0.888	1e-129
449528140	315	PREDICTED: LOW QUALITY PROTEIN: formate	0.842	0.812	0.842	1e-129
270342112	374	formate dehydrogenase [Phaseolus vulgari	0.759	0.617	0.854	1e-128

>gi|255552590|ref|XP_002517338.1| formate dehydrogenase, putative [Ricinus communis] gi|223543349|gb|EEF44880.1| formate dehydrogenase, putative [Ricinus communis]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/251 (88%), Positives = 239/251 (95%)

Query: 54  NFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAY 113
           +  AAA AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPG+HQVISG+WNVAG+AYRAY
Sbjct: 136 DLKAAAEAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYHQVISGDWNVAGIAYRAY 195

Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
           DLEGKTVGTVG GRIG+LLLQRLKPFNCNLLYHDR+KMDP+LE +TGAK+EEDLD MLPK
Sbjct: 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRIKMDPELENQTGAKYEEDLDAMLPK 255

Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
           CDIVV+NTPLTEKTRG+F+KDRIAK+KKGVLIVNNARGAIMDTQAV DACSSGHI GYSG
Sbjct: 256 CDIVVINTPLTEKTRGLFNKDRIAKLKKGVLIVNNARGAIMDTQAVADACSSGHIGGYSG 315

Query: 234 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI 293
           DVW PQPA KDHPWRYMPNQAMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGE+FP+QNYI
Sbjct: 316 DVWYPQPASKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEEFPLQNYI 375

Query: 294 VKAGELAPQYR 304
           VK G+LA QY+
Sbjct: 376 VKEGKLASQYQ 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452472|ref|XP_002278444.1| PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera] gi|296087673|emb|CBI34929.3| unnamed protein product [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/243 (89%), Positives = 233/243 (95%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVG
Sbjct: 141 GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVG 200

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIG+LLLQRLKPFNCNLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N 
Sbjct: 201 TVGAGRIGRLLLQRLKPFNCNLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINM 260

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKT+GMF+K+RIAK+KKGVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPA
Sbjct: 261 PLTEKTKGMFNKERIAKLKKGVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPA 320

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFP Q+YIVK G+LA 
Sbjct: 321 PKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQHYIVKEGQLAS 380

Query: 302 QYR 304
           QY+
Sbjct: 381 QYQ 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810156|emb|CAN71454.1| hypothetical protein VITISV_036417 [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/243 (89%), Positives = 233/243 (95%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVG
Sbjct: 141 GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVG 200

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIG+LLLQRLKPFNCNLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N 
Sbjct: 201 TVGAGRIGRLLLQRLKPFNCNLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINM 260

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKT+GMF+K+RIAK+KKGVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPA
Sbjct: 261 PLTEKTKGMFNKERIAKLKKGVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPA 320

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFP Q+YIVK G+LA 
Sbjct: 321 PKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQHYIVKEGQLAS 380

Query: 302 QYR 304
           QY+
Sbjct: 381 QYQ 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129102|ref|XP_002320501.1| formate dehydrogenase [Populus trichocarpa] gi|118486031|gb|ABK94859.1| unknown [Populus trichocarpa] gi|222861274|gb|EEE98816.1| formate dehydrogenase [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 218/242 (90%), Positives = 232/242 (95%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSNVVSVAEDELMRILILVRNFLPG+HQVI+GEWNVA +AYRAYDLEGKTVG
Sbjct: 145 GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYHQVINGEWNVAAIAYRAYDLEGKTVG 204

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIGKLLLQRLKPFNCNLLYHDR+KMDP+LEK+TGAKFEEDLD++L KCD+VV+NT
Sbjct: 205 TVGAGRIGKLLLQRLKPFNCNLLYHDRLKMDPELEKQTGAKFEEDLDSLLSKCDVVVINT 264

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKTRGMFDK+RIAKMKKGVLIVNNARGAIMDTQAVVDACSSG I GYSGDVWNPQPA
Sbjct: 265 PLTEKTRGMFDKERIAKMKKGVLIVNNARGAIMDTQAVVDACSSGQIGGYSGDVWNPQPA 324

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPN AMTPH+SGTTID QLRYAAGVKDMLDRYFKGE+FP QNYIVK G+LA 
Sbjct: 325 PKDHPWRYMPNHAMTPHISGTTIDGQLRYAAGVKDMLDRYFKGEEFPPQNYIVKEGKLAS 384

Query: 302 QY 303
           QY
Sbjct: 385 QY 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446660|ref|XP_004141089.1| PREDICTED: formate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 213/243 (87%), Positives = 236/243 (97%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSNVVSVAEDELMRILILVRNFLPG+HQV++GEWNVAG+A+RAYDLEGKTVG
Sbjct: 142 GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYHQVVNGEWNVAGIAHRAYDLEGKTVG 201

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIGKLLLQRLKPFNCNLLYHDR+K+DP+LEK+ GA+FEEDLD MLPKCD++V+NT
Sbjct: 202 TVGAGRIGKLLLQRLKPFNCNLLYHDRLKIDPELEKQIGAQFEEDLDAMLPKCDVLVINT 261

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLT+KTRG+F+K+RIAK KKGVLIVNNARGAIMDTQAVVDAC+SGH+ GYSGDVWNPQPA
Sbjct: 262 PLTDKTRGLFNKERIAKCKKGVLIVNNARGAIMDTQAVVDACNSGHVGGYSGDVWNPQPA 321

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAGVKDML+RYFKGE+FP QNYIVK G+LAP
Sbjct: 322 PKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLERYFKGEEFPAQNYIVKEGQLAP 381

Query: 302 QYR 304
           QYR
Sbjct: 382 QYR 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26454627|sp|Q07511.2|FDH_SOLTU RecName: Full=Formate dehydrogenase, mitochondrial; AltName: Full=NAD-dependent formate dehydrogenase; Short=FDH; Flags: Precursor gi|11991527|emb|CAA79702.2| mitochondrial formate dehydrogenase precursor [Solanum tuberosum]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/243 (89%), Positives = 231/243 (95%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVG
Sbjct: 139 GLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVG 198

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIG+LLLQRLKPFNCNLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NT
Sbjct: 199 TVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINT 258

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKT+GMFDK+RIAK+KKGVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPA
Sbjct: 259 PLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPA 318

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAP
Sbjct: 319 PKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAP 378

Query: 302 QYR 304
           QYR
Sbjct: 379 QYR 381

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211970690|emb|CAR98204.1| formate dehydrogenase [Lotus japonicus]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 213/243 (87%), Positives = 232/243 (95%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSN VSVAEDELMRILILVRNFLPG+HQ I+GEWNVAG+A+RAYDLEGKT+G
Sbjct: 144 GLTVAEVTGSNTVSVAEDELMRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTIG 203

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIGKLLLQRLKPFNCNLLYHDR+KM+P+LEKE GAKFEEDLD MLPKCD++V+NT
Sbjct: 204 TVGAGRIGKLLLQRLKPFNCNLLYHDRLKMEPELEKEIGAKFEEDLDAMLPKCDVIVINT 263

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLT+KTRG+FDK+RIAK+KKGVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPA
Sbjct: 264 PLTDKTRGLFDKNRIAKLKKGVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWFPQPA 323

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDML+R+FKGEDFP QNYIVK G+LA 
Sbjct: 324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLERHFKGEDFPEQNYIVKEGQLAS 383

Query: 302 QYR 304
           QYR
Sbjct: 384 QYR 386

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538487|ref|NP_001234857.1| formate dehydrogenase [Solanum lycopersicum] gi|56562181|emb|CAH60893.1| formate dehydrogenase [Solanum lycopersicum]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/243 (88%), Positives = 230/243 (94%)

Query: 62  GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVG 121
           GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVG
Sbjct: 139 GLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVG 198

Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181
           TVG GRIG+LLLQRLKPFNCNLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NT
Sbjct: 199 TVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINT 258

Query: 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241
           PLTEKT+GMFDK+RIAK+KKGVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPA
Sbjct: 259 PLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPA 318

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301
           PKDH WRYMPNQAMTPH+SGTTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAP
Sbjct: 319 PKDHLWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAP 378

Query: 302 QYR 304
           QYR
Sbjct: 379 QYR 381

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528140|ref|XP_004171064.1| PREDICTED: LOW QUALITY PROTEIN: formate dehydrogenase, mitochondrial-like, partial [Cucumis sativus]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/260 (84%), Positives = 246/260 (94%), Gaps = 4/260 (1%)

Query: 45  GNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN 104
           G+++  +N    AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPG+HQV++GEWN
Sbjct: 60  GSDHVDLN----AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYHQVVNGEWN 115

Query: 105 VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE 164
           VAG+A+RAYDLEGKTVGTVG GRIGKLLLQRLKPFNCNLLYHDR+K+DP+LEK+ GA+FE
Sbjct: 116 VAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKIDPELEKQIGAQFE 175

Query: 165 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224
           EDLD MLPKCD++V+NTPLT+KTRG+F+K+RIAK KKGVLIVNNARGAIMDTQAVVDAC+
Sbjct: 176 EDLDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKKGVLIVNNARGAIMDTQAVVDACN 235

Query: 225 SGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
           SGH+ GYSGDVWNPQPAPKDHPWRYM NQAMTPH+SGTTIDAQLRYAAGVKDML+RYFKG
Sbjct: 236 SGHVGGYSGDVWNPQPAPKDHPWRYMANQAMTPHISGTTIDAQLRYAAGVKDMLERYFKG 295

Query: 285 EDFPVQNYIVKAGELAPQYR 304
           E+FP QNYIVK G+LAPQYR
Sbjct: 296 EEFPAQNYIVKEGQLAPQYR 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270342112|gb|ACZ74695.1| formate dehydrogenase [Phaseolus vulgaris]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/248 (85%), Positives = 234/248 (94%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA+AAG+TVAEVTGSNVVSVAEDELMRILIL+RNFLPG+HQ ++GEWNVAG+A+RAYDLE
Sbjct: 127 AASAAGITVAEVTGSNVVSVAEDELMRILILIRNFLPGYHQSVNGEWNVAGIAHRAYDLE 186

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVGTVG GRIGKLLLQRLKPFNCNLLY DR++MDP LEKE GA FEEDLD MLPKCD+
Sbjct: 187 GKTVGTVGAGRIGKLLLQRLKPFNCNLLYFDRIRMDPGLEKEIGANFEEDLDAMLPKCDV 246

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           +V+NTPLTE+TRG+FDKD+I+K KKGVLIVNNARGAIMDTQAV DACS+GH+AGYSGDVW
Sbjct: 247 IVINTPLTEQTRGLFDKDKISKCKKGVLIVNNARGAIMDTQAVADACSNGHVAGYSGDVW 306

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
            PQPAPKDHPWRYMPN AMTPHVSGTTIDAQLRYAAGVKDMLDR+F+GEDFP QNYIVK 
Sbjct: 307 FPQPAPKDHPWRYMPNHAMTPHVSGTTIDAQLRYAAGVKDMLDRHFRGEDFPEQNYIVKE 366

Query: 297 GELAPQYR 304
           G+LA QYR
Sbjct: 367 GQLASQYR 374

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2185500	384	FDH "formate dehydrogenase" [A	0.769	0.609	0.837	2.2e-118
ASPGD|ASPL0000003895	365	aciA [Emericella nidulans (tax	0.756	0.630	0.548	4.1e-65
UNIPROTKB|O13437	364	FDH1 "Formate dehydrogenase" [	0.75	0.626	0.506	5.7e-59
SGD|S000005915	376	FDH1 "NAD(+)-dependent formate	0.756	0.611	0.477	2.1e-52
CGD|CAL0000982	379	FDH1 [Candida albicans (taxid:	0.753	0.604	0.498	7.2e-52
UNIPROTKB|Q59QN6	379	FDH1 "Potential NAD-formate de	0.753	0.604	0.498	7.2e-52
CGD|CAL0001883	379	orf19.1117 [Candida albicans (	0.753	0.604	0.466	5.2e-49
UNIPROTKB|Q59N71	379	FDH98 "Potential NAD-formate d	0.753	0.604	0.466	5.2e-49
TIGR_CMR|GSU_1198	542	GSU_1198 "D-3-phosphoglycerate	0.710	0.398	0.330	2.3e-28
SGD|S000005218	350	GOR1 "Glyoxylate reductase" [S	0.536	0.465	0.423	8.2e-28

TAIR|locus:2185500 FDH "formate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1075 (383.5 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
 Identities = 196/234 (83%), Positives = 217/234 (92%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGK
Sbjct:   151 SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGK 210

Query:   131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
             LLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGM
Sbjct:   211 LLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM 270

Query:   191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
             F+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYM
Sbjct:   271 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYM 330

Query:   251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 304
             PNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct:   331 PNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

ASPGD|ASPL0000003895 aciA [Emericella nidulans (taxid:162425)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 130/237 (54%), Positives = 170/237 (71%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNVVSVAE  +M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+
Sbjct:   119 SNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGE 178

Query:   131 LLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
              +L+RLKPF+C  LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG
Sbjct:   179 RVLRRLKPFDCKELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRG 238

Query:   190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
             +F+K+ I+KMK G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY
Sbjct:   239 LFNKELISKMKPGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRY 298

Query:   250 MPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 300
               +      A  PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ IV  G+ A
Sbjct:   299 AEHPWGGGNATVPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYA 355

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;RCA

GO:0033609 "oxalate metabolic process" evidence=RCA

GO:0006083 "acetate metabolic process" evidence=IEP

GO:0005622 "intracellular" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005829 "cytosol" evidence=IEA

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|O13437 FDH1 "Formate dehydrogenase" [Candida boidinii (taxid:5477)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 119/235 (50%), Positives = 163/235 (69%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNVVSVAE  +M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG 
Sbjct:   118 SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGY 177

Query:   131 LLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
              +L+RL PFN   LLY+D   +  + E++ GA+  E+++ ++ + DIV VN PL   T+G
Sbjct:   178 RVLERLLPFNPKELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG 237

Query:   190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
             + +K+ ++K KKG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR 
Sbjct:   238 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRD 297

Query:   250 MPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 298
             M N+     AMTPH SGTT+DAQ RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct:   298 MRNKYGAGNAMTPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGE 352

GO:0005829 "cytosol" evidence=ISS

GO:0006734 "NADH metabolic process" evidence=IMP

GO:0006735 "NADH regeneration" evidence=IDA

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IMP;IDA

GO:0015946 "methanol oxidation" evidence=IMP

GO:0030416 "methylamine metabolic process" evidence=IMP

GO:0042183 "formate catabolic process" evidence=IDA

GO:0042426 "choline catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070403 "NAD+ binding" evidence=IDA

SGD|S000005915 FDH1 "NAD(+)-dependent formate dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 119/249 (47%), Positives = 160/249 (64%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRIG 
Sbjct:   120 SNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGY 179

Query:   131 LLLQRLKPFNCN-LLYHDRVKMDPQ-LEK--ETGAKFE---------EDLDTMLPKCDIV 177
              +L+RL  FN   LLY+D  ++  + + +  E    F          E L+ M+ + D+V
Sbjct:   180 RVLERLVAFNPKKLLYYDYQELPAEAINRLNEASKLFNGRGDIVQRVEKLEDMVAQSDVV 239

Query:   178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237
              +N PL + +RG+F+K  I+ MK G  +VN ARGAI   + V +A  SG +AGY GDVW+
Sbjct:   240 TINCPLHKDSRGLFNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWD 299

Query:   238 PQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQN 291
              QPAPKDHPWR M N+     AMT H+SGT++DAQ RYA GVK++L+ YF K  D+  Q+
Sbjct:   300 KQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQD 359

Query:   292 YIVKAGELA 300
              IV+ G  A
Sbjct:   360 IIVQNGSYA 368

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;IGI;ISS;IDA

GO:0042183 "formate catabolic process" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0000982 FDH1 [Candida albicans (taxid:5476)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 125/251 (49%), Positives = 159/251 (63%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNVVSVAE  +M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG 
Sbjct:   120 SNVVSVAEHAVMTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGY 179

Query:   131 LLLQRLKPFNCN-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIV 177
              +L+RL  FN   LLY+D   +  + + K   A   F          E L+ ++ + D+V
Sbjct:   180 RILERLVAFNPKKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVV 239

Query:   178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237
              +N PL EK+RG+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW 
Sbjct:   240 TINCPLYEKSRGLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWP 298

Query:   238 PQPAPKDHPWRYMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPV 289
              QPAPKD PWR M N        AMT HVSGT++DAQ RYA GVK +L  YF K  ++  
Sbjct:   299 VQPAPKDMPWRTMHNPYGEAYGNAMTLHVSGTSLDAQARYANGVKQILTEYFNKTYNYRP 358

Query:   290 QNYIVKAGELA 300
             Q+ IV  G+ A
Sbjct:   359 QDVIVIDGDYA 369

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|Q59QN6 FDH1 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 125/251 (49%), Positives = 159/251 (63%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNVVSVAE  +M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG 
Sbjct:   120 SNVVSVAEHAVMTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGY 179

Query:   131 LLLQRLKPFNCN-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIV 177
              +L+RL  FN   LLY+D   +  + + K   A   F          E L+ ++ + D+V
Sbjct:   180 RILERLVAFNPKKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVV 239

Query:   178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237
              +N PL EK+RG+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW 
Sbjct:   240 TINCPLYEKSRGLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWP 298

Query:   238 PQPAPKDHPWRYMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPV 289
              QPAPKD PWR M N        AMT HVSGT++DAQ RYA GVK +L  YF K  ++  
Sbjct:   299 VQPAPKDMPWRTMHNPYGEAYGNAMTLHVSGTSLDAQARYANGVKQILTEYFNKTYNYRP 358

Query:   290 QNYIVKAGELA 300
             Q+ IV  G+ A
Sbjct:   359 QDVIVIDGDYA 369

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

CGD|CAL0001883 orf19.1117 [Candida albicans (taxid:5476)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 117/251 (46%), Positives = 154/251 (61%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNV SVAE  +M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG 
Sbjct:   120 SNVQSVAEHAIMTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGY 179

Query:   131 LLLQRLKPFNCN-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIV 177
              +L+RL  FN   LLY+D   +  + + K   A   F          E L+ ++ + D+V
Sbjct:   180 RILERLIAFNPKKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVV 239

Query:   178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237
              +N PL EK++GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW 
Sbjct:   240 TLNCPLYEKSKGMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWP 298

Query:   238 PQPAPKDHPWRYMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPV 289
              QPAPKD PWR M N        AMT HVSGT++DAQ RYA GVK +L  YF K   +  
Sbjct:   299 VQPAPKDMPWRTMHNPYGKDYGNAMTVHVSGTSLDAQARYANGVKQILTEYFDKTYKYRP 358

Query:   290 QNYIVKAGELA 300
             Q+ I+  G  A
Sbjct:   359 QDVIIIDGHYA 369

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q59N71 FDH98 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 117/251 (46%), Positives = 154/251 (61%)

Query:    71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
             SNV SVAE  +M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG 
Sbjct:   120 SNVQSVAEHAIMTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGY 179

Query:   131 LLLQRLKPFNCN-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIV 177
              +L+RL  FN   LLY+D   +  + + K   A   F          E L+ ++ + D+V
Sbjct:   180 RILERLIAFNPKKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVV 239

Query:   178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237
              +N PL EK++GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW 
Sbjct:   240 TLNCPLYEKSKGMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWP 298

Query:   238 PQPAPKDHPWRYMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPV 289
              QPAPKD PWR M N        AMT HVSGT++DAQ RYA GVK +L  YF K   +  
Sbjct:   299 VQPAPKDMPWRTMHNPYGKDYGNAMTVHVSGTSLDAQARYANGVKQILTEYFDKTYKYRP 358

Query:   290 QNYIVKAGELA 300
             Q+ I+  G  A
Sbjct:   359 QDVIIIDGHYA 369

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|GSU_1198 GSU_1198 "D-3-phosphoglycerate dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 321 (118.1 bits), Expect = 2.3e-28, P = 2.3e-28
 Identities = 74/224 (33%), Positives = 122/224 (54%)

Query:    72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
             N  S AE  +  +L   RN    +  + SGEW  A   +  Y+L+GKT G +G G++G  
Sbjct:    97 NTNSAAEHAMALLLSFCRNVTRANGSLKSGEWKRA--PFTGYELKGKTAGVIGLGKVGGR 154

Query:   132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
             +  RLK F C++L  D   +  +   + G K     D +   CDI+ V+TPLT++TR M 
Sbjct:   155 VATRLKAFECDVLACDPY-IAVKRAHDLGVKLVSH-DEIYKNCDIITVHTPLTDETRNMI 212

Query:   192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
              +  +A MK GV+IVN ARG I++  A++    SG +AG + DV++ +P   ++  + + 
Sbjct:   213 GERELAMMKDGVIIVNAARGGIIEEAALLKYLESGKVAGAAVDVFSEEPPKSEYLKKLIG 272

Query:   252 NQ--AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI 293
             ++   +TPH+   T +AQ+  A  V   +  Y   +D P++N +
Sbjct:   273 HERVVVTPHLGANTFEAQVNVAVDVSREILNYL--DDQPLENAV 314

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

SGD|S000005218 GOR1 "Glyoxylate reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 72/170 (42%), Positives = 103/170 (60%)

Query:    75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA---YDLEGKTVGTVGCGRIGKL 131
             + A+  +  +L  +RNF  G+ ++I G W  AG A  +   YD EGKTVG +G GRIG+ 
Sbjct:   118 ATADTHVFLLLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRC 177

Query:   132 LLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
             +L+RLKPF   N +YH+R ++ P  E+E G ++    +  L + DIV VN PL   T  +
Sbjct:   178 ILERLKPFGFENFIYHNRHQL-PS-EEEHGCEYV-GFEEFLKRSDIVSVNVPLNHNTHHL 234

Query:   191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 240
              + + I KMK GV+IVN ARGA++D QA+ DA  SG I     DV+  +P
Sbjct:   235 INAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEP 284

GO:0047964 "glyoxylate reductase activity" evidence=IEA;IMP

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0009436 "glyoxylate catabolic process" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0051287 "NAD binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7E4	FDH_ARATH	1, ., 2, ., 1, ., 2	0.8436	0.7993	0.6328	yes	no
Q9SXP2	FDH1_ORYSJ	1, ., 2, ., 1, ., 2	0.8683	0.7960	0.6436	yes	no
Q9ZRI8	FDH_HORVU	1, ., 2, ., 1, ., 2	0.8559	0.7993	0.6445	N/A	no
Q07511	FDH_SOLTU	1, ., 2, ., 1, ., 2	0.8930	0.7828	0.6246	N/A	no
Q03134	FDH_EMENI	1, ., 2, ., 1, ., 2	0.5542	0.7960	0.6630	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.2.1.2	0.991
3rd Layer	1.2.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	0.0
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-164
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-125
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	8e-82
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	3e-78
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	8e-70
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	3e-67
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	5e-67
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	1e-65
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	9e-60
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-59
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	4e-58
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	1e-56
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-54
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	5e-52
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	6e-50
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-49
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	3e-48
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	5e-47
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	1e-46
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	3e-45
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	1e-44
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	4e-44
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	6e-44
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	7e-44
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	1e-43
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	8e-42
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	3e-41
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	1e-40
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	2e-39
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	5e-39
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	1e-38
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-38
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	4e-38
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-37
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	4e-35
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	6e-35
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	1e-34
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	3e-33
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	7e-33
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	8e-33
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	4e-32
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	2e-31
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	9e-31
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	5e-30
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	1e-29
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	2e-28
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	5e-28
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	2e-27
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-27
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	3e-27
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	5e-27
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	2e-20
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	4e-17
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	1e-15
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	7e-14
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	4e-13
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	8e-13
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-12
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	2e-11
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	1e-10
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	1e-07
COG1712	255	COG1712, COG1712, Predicted dinucleotide-utilizing	0.002
PRK13304	265	PRK13304, PRK13304, L-aspartate dehydrogenase; Rev	0.004

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  554 bits (1430), Expect = 0.0
 Identities = 224/248 (90%), Positives = 238/248 (95%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AAAAAGLTVAEVTGSNVVSVAEDELMRILIL+RNFLPG+HQV+SGEWNVAG+AYRAYDLE
Sbjct: 139 AAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLE 198

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVGTVG GRIG+LLLQRLKPFNCNLLYHDR+KMDP+LEKETGAKFEEDLD MLPKCD+
Sbjct: 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDV 258

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           VV+NTPLTEKTRGMF+K+RIAKMKKGVLIVNNARGAIMDTQAV DACSSGHI GY GDVW
Sbjct: 259 VVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVW 318

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
            PQPAPKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFP QNYIVK 
Sbjct: 319 YPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKE 378

Query: 297 GELAPQYR 304
           G+LA QY+
Sbjct: 379 GKLASQYQ 386

Length = 386

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  460 bits (1185), Expect = e-164
 Identities = 152/247 (61%), Positives = 191/247 (77%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+TVAEVTGSNVVSVAE  +M ILILVRN++PGH Q I G WNVA V  RAYDLE
Sbjct: 102 AANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEGGWNVADVVKRAYDLE 161

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVGTVG GRIG  +L+RLKPF+ +LLY+DR ++  ++EKE G     DL+ M+ KCD+
Sbjct: 162 GKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDV 221

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V +N PL  +T G+F+K+ ++KMKKG  +VN ARG I D +AV +A  SGH+AGY+GDVW
Sbjct: 222 VTINCPLHPETEGLFNKELLSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVW 281

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
            PQPAPKDHPWR MPN AMTPH+SGTT+DAQ RYAAG K++L+R+F+GE F  +  IV+ 
Sbjct: 282 FPQPAPKDHPWRTMPNNAMTPHISGTTLDAQARYAAGTKEILERFFEGEPFRPEYLIVQG 341

Query: 297 GELAPQY 303
           G+LA + 
Sbjct: 342 GKLAGKG 348

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  363 bits (933), Expect = e-125
 Identities = 127/244 (52%), Positives = 169/244 (69%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA+  G+TVAEVTGSN +SVAE  +M IL LVRN+ P H Q + G WN+A    R+YDLE
Sbjct: 132 AASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLE 191

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           G TVG VG GRIG  +L+RLKPF+  L Y DR ++  ++E+E G  +    D+++  CD+
Sbjct: 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDV 251

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ PL  +T  +FD D +++MK+G  +VN ARG I+D  AVV A  SGH+AGY+GDVW
Sbjct: 252 VTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVW 311

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
            PQPAP DHPWR MP   MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV  
Sbjct: 312 FPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDG 371

Query: 297 GELA 300
           G LA
Sbjct: 372 GRLA 375

Length = 385

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  249 bits (637), Expect = 8e-82
 Identities = 90/225 (40%), Positives = 137/225 (60%), Gaps = 3/225 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+TV  V G+N  +VAE  L  +L L+R        V  G W      +  Y+LE
Sbjct: 81  AAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRG-WGWLWAGFPGYELE 139

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVG VG GRIG+ + +RL+ F   +LY+DR +  P+ E++ G +    LD +L + D+
Sbjct: 140 GKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRK-PEPEEDLGFRVV-SLDELLAQSDV 197

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           VV++ PLT +TR + +++ +A MK G ++VN ARG ++D  A++ A  SG IAG + DV+
Sbjct: 198 VVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVF 257

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
            P+P P DHP   +PN  +TPH++G T +A+ R A    + L+R+
Sbjct: 258 EPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLERF 302

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  240 bits (615), Expect = 3e-78
 Identities = 94/246 (38%), Positives = 141/246 (57%), Gaps = 10/246 (4%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR--AYD 114
           AA   G+TV  V G +  +VAE  +  IL L R    G  +V  G W+++G       +D
Sbjct: 84  AAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFD 143

Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           L GKT+G +G GRIG+ + +RLK F   +LY+DR   +P+ EKE GA++  DLD +L + 
Sbjct: 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP-NPEAEKELGARYV-DLDELLAES 201

Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           DI+ ++ PLT +TR + + + +AKMK G ++VN ARG ++D QA++DA  SG IAG   D
Sbjct: 202 DIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLD 261

Query: 235 VWNPQPAPKDHPWRYMPNQ---AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQN 291
           V+  +PA  DHP   + N     +TPH++  T +A+   A    + L+ +F G    V  
Sbjct: 262 VFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGG---VPP 318

Query: 292 YIVKAG 297
             V   
Sbjct: 319 NEVNPE 324

Length = 324

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  219 bits (559), Expect = 8e-70
 Identities = 85/229 (37%), Positives = 127/229 (55%), Gaps = 3/229 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V    G N +SVAE  L  +L L R           GEW+    A+R  +L 
Sbjct: 84  AATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWD--RKAFRGTELA 141

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVG +G GRIG+ + +RLK F   ++ +D      +     G    + LD +L + DI
Sbjct: 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP-RERAGVDGVVGVDSLDELLAEADI 200

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++ PLT +TRG+ + + +AKMK G +++N ARG ++D  A++ A  SG IAG + DV+
Sbjct: 201 LTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVF 260

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
             +P P D P   +PN  +TPH+ G+T +AQ R A  V + + RY  G 
Sbjct: 261 EEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGG 309

Length = 324

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  212 bits (541), Expect = 3e-67
 Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 2/230 (0%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA A G+ VA + G N  SVAE  +M +L L+R       ++ +G W        + +L 
Sbjct: 83  AATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEADRELRAGRWG-RPEGRPSRELS 141

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVG VG G IG+ + +RL+ F   ++Y+DR +     EK+ G ++ E LD +L + D+
Sbjct: 142 GKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEAEEKDLGVRYVE-LDELLAESDV 200

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ PLT +TR +   + +A MK G +++N ARG ++D +A++ A  SGH+AG   DV+
Sbjct: 201 VSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVF 260

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 286
             +P P D P   + N  +TPH++G T ++  R AA V + + R  +GE 
Sbjct: 261 WQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVAENIARLLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  211 bits (539), Expect = 5e-67
 Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 4/229 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA A G+ V    G+N +SVAE  +  +L L RN       + +G+W+     +   +L 
Sbjct: 80  AATARGILVVNAPGANTISVAEHTIALMLALARNIPQADASLRAGKWDRK--KFMGVELR 137

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G VG GRIG+ + +R + F   +L +D   +  +     G +    LD +L + D 
Sbjct: 138 GKTLGIVGLGRIGREVARRARAFGMKVLAYDPY-ISAERAAAGGVELV-SLDELLAEADF 195

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++TPLT +TRG+ + + +AKMK G +++N ARG I+D  A+ DA  SG IAG + DV+
Sbjct: 196 ISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVF 255

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
             +P P D P   +PN  +TPH+  +T +AQ R A    + +     GE
Sbjct: 256 EQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVDAAEQVLAVLAGE 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  203 bits (518), Expect = 1e-65
 Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 5/180 (2%)

Query: 81  LMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN 140
           L  +L L R       QV +G W     A    +L GKTVG +G GRIG+ + +RLK F 
Sbjct: 1   LALLLALARRIPEADRQVRAGRWR--PDALLGRELSGKTVGIIGLGRIGRAVARRLKAFG 58

Query: 141 CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 200
             ++ +DR        +  GA++   LD +L + D+V ++ PLT +TR + + +R+A MK
Sbjct: 59  MKVIAYDRYPKAE--AEALGARYV-SLDELLAESDVVSLHLPLTPETRHLINAERLALMK 115

Query: 201 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 260
            G +++N ARG ++D  A++ A  SG IAG + DV+ P+P P DHP   +PN  +TPH++
Sbjct: 116 PGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score =  192 bits (490), Expect = 9e-60
 Identities = 67/234 (28%), Positives = 91/234 (38%), Gaps = 38/234 (16%)

Query: 57  AAAAAGLTVAEVTG-------SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVA 109
           A A AGLT   V G       SN +   E  +  I   +    PG               
Sbjct: 106 ALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQPGR-------------L 152

Query: 110 YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT 169
             A D+ GKTV  VG G +GK   Q L+     +L  D      +  +E G K  E+L+ 
Sbjct: 153 GGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEE 212

Query: 170 MLPKCDIVVVNTPLTEKTRGMF-DKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSSGH 227
            L + D++V  T L  K  G+   ++ + +MK G +IVN A GA+   QA+       GH
Sbjct: 213 ALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGH 272

Query: 228 IAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
              + GDV  P P                    G   DA LR AA     L + 
Sbjct: 273 GVVHYGDVNMPGPGC----------------AMGVPWDATLRLAANTLPALVKL 310

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  191 bits (489), Expect = 2e-59
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V    G+N  SVAE  +  +L L R       +V +G W+         +L 
Sbjct: 86  AAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAGGWDRPV----GTELY 141

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G +G GRIGK + +RL  F   +L +D    D +  KE G +F   L+ +L + D 
Sbjct: 142 GKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYP-DEEFAKEHGVEFV-SLEELLKESDF 199

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++ PLT +TR + +   +A MK G +++N ARG ++D +A+ +A  SG IAG + DV+
Sbjct: 200 ISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVF 259

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFK 283
             +P P D P   +PN  +TPH+  +T +A LR        +     
Sbjct: 260 EEEPPPADSPLLELPNVILTPHIGASTKEAVLRMGTMAAQNVIDVLA 306

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  188 bits (481), Expect = 4e-58
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           A    G+ V+   G+   + A+  L  IL  +RNF        +G+W        A+D  
Sbjct: 94  ALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDPR 153

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G +G G IGK + ++   F   ++YH+R ++  +LEK   A +   LD +L + D+
Sbjct: 154 GKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKAL-ATYYVSLDELLAQSDV 212

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V +N PLT  TR + +K   AKMK GV+IVN ARGA++D  A+VDA  SG +A    DV+
Sbjct: 213 VSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVF 272

Query: 237 N--PQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
              P+  P       MPN  + PH+   T++ Q +    V + ++ + + 
Sbjct: 273 ENEPEVNPG---LLKMPNVTLLPHMGTLTVETQEKMEELVLENIEAFLET 319

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  184 bits (470), Expect = 1e-56
 Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 4/228 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAY--D 114
           AA   G+ V    G N  +VAE  +  +L   RN    H  +  GEW      Y  Y  +
Sbjct: 85  AATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPE 144

Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           L GKTVG VG G IG+ + +RLK F   +L +D   +DP+  +  G K    L+ +L + 
Sbjct: 145 LRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPY-VDPEKIEADGVKKV-SLEELLKRS 202

Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           D+V ++  LT +TRGM   +  A MK     +N AR  ++D  A+++A   G I G + D
Sbjct: 203 DVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALD 262

Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
           V+  +P P DHP   + N  +TPH++G T D   R    + + L RY 
Sbjct: 263 VFPEEPLPADHPLLKLDNVTLTPHIAGATRDVAERSPEIIAEELKRYL 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  179 bits (456), Expect = 2e-54
 Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 14/213 (6%)

Query: 57  AAAAAGLTVAEVTGSN---VVSVAEDELMRILIL--VRNFLPGHHQVISGEW-NVAGVAY 110
           AA A G+ V     +N   V++ A  +L   L+L   R  + G   V +GEW   +    
Sbjct: 83  AAKARGIPV-----TNTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLL 137

Query: 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 170
              DL GKT+G VG GRIG+ + +R K F   +LYH+R +  P+ E+E GA++   LD +
Sbjct: 138 LGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRK-PEAEEELGARYV-SLDEL 195

Query: 171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230
           L + D V ++ PLT +TR + + +R+A MK   +++N ARG ++D  A+V+A  SG IAG
Sbjct: 196 LAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSGKIAG 255

Query: 231 YSGDVWNPQPAPKDHPWRYMPNQAMTPHV-SGT 262
              DV+ P+P P DHP   +PN  + PH+ S T
Sbjct: 256 AGLDVFEPEPLPADHPLLTLPNVVLLPHIGSAT 288

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  178 bits (454), Expect = 5e-52
 Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 23/243 (9%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V      N +S AE  +  +L L RN    H  + +G+W      +   +L 
Sbjct: 82  AATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK--KFMGVELY 139

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEE------DLDT 169
           GKT+G +G GRIG  + +R K F   ++ Y      DP +   +  +  +       LD 
Sbjct: 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAY------DPYI---SPERAAQLGVELVSLDE 190

Query: 170 MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229
           +L + D + ++TPLT +TRG+   + +AKMK GV I+N ARG I+D  A+ +A  SG +A
Sbjct: 191 LLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250

Query: 230 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGV-KDMLDRYFKGEDFP 288
           G + DV+  +P P D P   +PN  +TPH+  +T +AQ   A  V + ++D   +G   P
Sbjct: 251 GAALDVFEKEP-PTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVID-ALRGG--P 306

Query: 289 VQN 291
           V N
Sbjct: 307 VPN 309

Length = 526

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  167 bits (425), Expect = 6e-50
 Identities = 72/206 (34%), Positives = 102/206 (49%), Gaps = 7/206 (3%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN--VAGVAYRAYD 114
           AA   G+ V  V       VA+  L  IL L R        V +G W+  V G   R   
Sbjct: 83  AATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRR--- 139

Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           L G T+G VG GRIG+ + +R K F   ++ +D       +    G +    LD +L + 
Sbjct: 140 LRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPYV-PDGVAALGGVRVV-SLDELLARS 197

Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           D+V ++ PLT +TR + D + +A MK G  +VN ARG ++D  A+  A  SG IAG + D
Sbjct: 198 DVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALD 257

Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVS 260
           V   +P P D P    PN  +TPH +
Sbjct: 258 VLEEEPPPADSPLLSAPNVILTPHAA 283

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  166 bits (424), Expect = 2e-49
 Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 3/229 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           A    G+ V     +N   VAE  L  IL+ +R          +G             L 
Sbjct: 90  AVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLY 149

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           G+TVG VG GRIG+ +++ L+PF   +L +D   +        G +    LD +L + D+
Sbjct: 150 GRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPY-LPAAEAAALGVE-LVSLDELLARSDV 207

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ PLT +TRGM D   +A M+ G   +N ARGA++D  A++    SG +     DV 
Sbjct: 208 VSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRLRAAL-DVT 266

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           +P+P P D P R +PN  +TPH++G+T D + R      D L+R+  GE
Sbjct: 267 DPEPLPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYALDELERFLAGE 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  163 bits (414), Expect = 3e-48
 Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 5/231 (2%)

Query: 57  AAAAAGLTVAEVTGS-NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDL 115
           AA   G+ V  V G+    +VAE  +  IL ++R        V  G+W      +  ++L
Sbjct: 87  AATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQASEAVKEGKWTER-ANFVGHEL 145

Query: 116 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
            GKTVG +G G IG  + + LK  FN  +L +D      ++ K+ GAK    L+ +L + 
Sbjct: 146 SGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYV-SEEVIKKKGAKPV-SLEELLAES 203

Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           DI+ ++ PLTE+T  M ++   +KMKKGV++VN ARG ++D +A+++A  SG IAG   D
Sbjct: 204 DIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLD 263

Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           V   +P   DHP  +  N  +TPH+   T ++       V D ++ +  G+
Sbjct: 264 VLEEEPIKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGK 314

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  164 bits (418), Expect = 5e-47
 Identities = 84/233 (36%), Positives = 124/233 (53%), Gaps = 12/233 (5%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA A G+ V      N +S AE  L  +L   RN       +  GEW+    A+   +L 
Sbjct: 80  AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK--AFMGTELY 137

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLP 172
           GKT+G +G GRIG ++ +R K F   +L +D     P +  E     G +  +DLD +L 
Sbjct: 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYD-----PYISPERAEQLGVELVDDLDELLA 192

Query: 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
           + D + V+TPLT +TRG+   + +AKMKKGV+IVN ARG I+D  A+ +A   GH+   +
Sbjct: 193 RADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAA 252

Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
            DV+  +P P D+P   + N   TPH+  +T +AQ   A  V + +    KG 
Sbjct: 253 LDVFEKEP-PTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGL 304

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  158 bits (403), Expect = 1e-46
 Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 9/221 (4%)

Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGK 130
           N  +VAE  L  IL L +  +   + +  G W+  AG    + +L GKTVG +G G IG+
Sbjct: 91  NSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGR 150

Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            + + LK F   ++   R   + +     G     DLD  L + D+VVV  PLT++TRG+
Sbjct: 151 EIARLLKAFGMRVIGVSRSPKEDEGADFVG--TLSDLDEALEQADVVVVALPLTKQTRGL 208

Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW------NPQPAPKD 244
                +A MK G ++VN  RG ++D +A+ +A     IAG + DVW          AP  
Sbjct: 209 IGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSR 268

Query: 245 HPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           +P+  +PN  M+PH +G T +   R      + + RY +GE
Sbjct: 269 YPFHELPNVIMSPHNAGWTEETFRRRIDEAAENIRRYLRGE 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  154 bits (393), Expect = 3e-45
 Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 11/225 (4%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG----VAYRA 112
           AA   G+TV  V G +  SVA+     +L L R     +  V +GEW  +       Y  
Sbjct: 83  AAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPI 142

Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172
            +L GKT+G +G G IG+ + +  + F   +L+ +R    P  E          LD +L 
Sbjct: 143 IELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGAPPLREGYV------SLDELLA 196

Query: 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
           + D++ ++ PLT +TR + + + +AKMK G +++N ARG ++D QA+ DA +SG IAG  
Sbjct: 197 QSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGKIAGAG 256

Query: 233 GDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQLRYAAGVKD 276
            DV + +P   D+P  +  PN  +TPH++  + +A+ R    + D
Sbjct: 257 LDVLSQEPPRADNPLLKAAPNLIITPHIAWASREARQRLMDILVD 301

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  153 bits (388), Expect = 1e-44
 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
            A   G+ V    G++  SVAE  +  +L L R     + ++  G+WN     Y+  +L 
Sbjct: 81  YAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKK--KYKGIELR 138

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G +G GRIG+ + +  +    N++ +D    D Q   E G K    L+ +L   D 
Sbjct: 139 GKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQ-AVELGVKTV-SLEELLKNSDF 196

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++ PLT +T+ M +K  +  MK G +I+N +RG ++D +A+++A  SG +AG + DV+
Sbjct: 197 ISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVF 256

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
             +P P       +PN ++TPH+  +T +AQ R    + + +  + 
Sbjct: 257 ENEP-PPGSKLLELPNVSLTPHIGASTKEAQERIGEELANKIIEFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  152 bits (386), Expect = 4e-44
 Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 7/230 (3%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           A    G+TV+   G +  +VAE  +   + L+RN +P    V +G    AG      +L 
Sbjct: 87  ACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGG-TKAG--LIGRELA 143

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVG VG G IG  + +  K F C +L + R +   +  K  G ++   LD +L + DI
Sbjct: 144 GKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSE--KEEAKALGIEYV-SLDELLAESDI 200

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ PL ++T+G+  K+++A MK+  +++N ARG ++D +A+ DA + G IAG   DV+
Sbjct: 201 VSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAGIDVF 260

Query: 237 NPQPA-PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           + +P  P D+P  + PN  +TPHV+  T +A  + A  V D ++ +  G+
Sbjct: 261 DMEPPLPADYPLLHAPNTILTPHVAFATEEAMEKRAEIVFDNIEAWLAGK 310

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  151 bits (384), Expect = 6e-44
 Identities = 73/214 (34%), Positives = 105/214 (49%), Gaps = 5/214 (2%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           +VAE  L  +L  +R       +  +  W+ A        L G TV  VG G IG+ L+ 
Sbjct: 86  TVAEHALALLLAGLRQL---PARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIP 142

Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
            L PF   ++  +R     +   ET     + LD + P  D VV+  PLT +TR + D  
Sbjct: 143 LLAPFGAKVIAVNRSGRPVEGADETVPA--DRLDEVWPDADHVVLAAPLTPETRHLVDAA 200

Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA 254
            +A MK    +VN ARG ++DT A+VDA  SG IAG + DV +P+P P  HP   +PN  
Sbjct: 201 ALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGHPLWSLPNAL 260

Query: 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
           +TPHV+ T    +   A  V + +  +  GE   
Sbjct: 261 ITPHVANTPEVIRPLLAERVAENVRAFAAGEPLL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  152 bits (385), Expect = 7e-44
 Identities = 74/210 (35%), Positives = 117/210 (55%), Gaps = 8/210 (3%)

Query: 84  ILILVRNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKP 138
           +L   R  +   H V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K 
Sbjct: 112 LLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKG 171

Query: 139 FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 198
           F   +LY+ R +  P+ EKE GA++   L+ +L + D V ++ PLT++T  M +++R+  
Sbjct: 172 FGMRILYYSRTR-KPEAEKELGAEYR-PLEELLRESDFVSLHVPLTKETYHMINEERLKL 229

Query: 199 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 258
           MK   ++VN ARG ++DT+A+V A   G IAG   DV+  +P   +     + N  + PH
Sbjct: 230 MKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPH 288

Query: 259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
           +   T +A+   A  V + L  + +GE  P
Sbjct: 289 IGSATFEAREGMAELVAENLIAFKRGEVPP 318

Length = 333

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  151 bits (384), Expect = 1e-43
 Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 3/230 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY-RAYDL 115
            A   G+ V      +    AE     IL L R    G   +  G +      +   ++L
Sbjct: 83  YAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHEL 142

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
            GKT+G +G GRIG+ + +R K F   +LY++R ++  + EKE GA +  DLD +L + D
Sbjct: 143 AGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSEETEKELGATYV-DLDELLKESD 201

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
            V ++ P T +T  + D      MK    ++N ARG ++D +A+VDA  +G IAG + DV
Sbjct: 202 FVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDV 261

Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           +  +P       + + N  +TPH+   T++A+   A    D +  + +G+
Sbjct: 262 FEFEPEVSPE-LKKLDNVILTPHIGNATVEARDAMAKEAADNIISFLEGK 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  146 bits (371), Expect = 8e-42
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 55  FLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYD 114
           F       + +    G     +AE  L  +L   R             W   G   R  +
Sbjct: 75  FPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERRWQRRG-PVR--E 131

Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPK 173
           L GKTV  VG G IG+ + +R K F   ++   R  +  P +  E      ++LD +LP+
Sbjct: 132 LAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYT--PDELDELLPE 189

Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            D VV   PLT +TRG+F+ +R A MK G +++N  RG+++D  A+++A  SG IAG + 
Sbjct: 190 ADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAAL 249

Query: 234 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 286
           DV+  +P P D P   +PN  +TPH+SG +     R      + L RY  GE 
Sbjct: 250 DVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLENLRRYLAGEP 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  145 bits (367), Expect = 3e-41
 Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 26/218 (11%)

Query: 57  AAAAAGLTVAEVTGS-NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDL 115
           AA   G+ V+ VT S N  SVA+  +M +L+ +R +     +    ++++ G+  +  +L
Sbjct: 86  AAKELGIKVSNVTYSPN--SVADYTVMLMLMALRKYKQIMKRAEVNDYSLGGL--QGREL 141

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPK 173
              TVG +G GRIG+ +++ L  F C +L +D          E   K+ E  DLDT+  +
Sbjct: 142 RNLTVGVIGTGRIGQAVIKNLSGFGCKILAYDP------YPNEEVKKYAEYVDLDTLYKE 195

Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            DI+ ++TPLTE+T  + +K+ IAKMK GV+I+N ARG ++DT+A+++   SG I G + 
Sbjct: 196 SDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAAL 255

Query: 234 DVW---------NPQPAPKDHPW----RYMPNQAMTPH 258
           DV          + +     +      R  PN  +TPH
Sbjct: 256 DVIEGEDGIYYNDRKGDILSNRELAILRSFPNVILTPH 293

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  143 bits (362), Expect = 1e-40
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 25/229 (10%)

Query: 48  YASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG 107
           + ++ P+ L    A LT+               L+  + L R+ L G   V SG++    
Sbjct: 91  WVTIVPDLLTEPTAELTIG--------------LL--IGLGRHILAGDRFVRSGKFGGWR 134

Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 167
             +    L+GKTVG +G G +G+ + +RL  F   LLY+D   +D   E+    +  E L
Sbjct: 135 PKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHPLDQAEEQALNLRRVE-L 193

Query: 168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227
           D +L   D +V+  PLT  T  + + + +AKMK G L+VN  RG+++D  AV +A  SGH
Sbjct: 194 DELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGH 253

Query: 228 IAGYSGDV-----WNPQPAPKDHPWRYM---PNQAMTPHVSGTTIDAQL 268
           + GY+ DV     W     P+  P   +        TPH+     + +L
Sbjct: 254 LGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSAVDEVRL 302

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  140 bits (354), Expect = 2e-39
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 20/243 (8%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISG---------EWNVAG 107
           AA+  G+ V    G+N  +VAE  +  +L L RN +     V +G         E     
Sbjct: 68  AASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQ 127

Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--E 165
             +   +L GKT+G +G G IG+L+          ++ +D   +  +   +   + +   
Sbjct: 128 --FVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPY-LSVEAAWKLSVEVQRVT 184

Query: 166 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 225
            L+ +L   D + ++ PLT++TRG+ + + +AKMK G +++N ARG I+D +A+++A   
Sbjct: 185 SLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDE 244

Query: 226 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           G + GY  D   P+PA   H     PN   TPH+  +T +A+   A      +  + +  
Sbjct: 245 GKLGGYVTDF--PEPALLGHL----PNVIATPHLGASTEEAEENCAVMAARQIMDFLETG 298

Query: 286 DFP 288
           +  
Sbjct: 299 NIT 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  138 bits (350), Expect = 5e-39
 Identities = 79/234 (33%), Positives = 112/234 (47%), Gaps = 14/234 (5%)

Query: 54  NFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV-ISGEWNVAGVAYRA 112
             L     G+T+    G +  S AE  +  IL  +R   P   +    G W         
Sbjct: 73  GVLPLLPEGVTLCNARGVHDASTAELAVALILASLRGL-PRFVRAQARGRWEPRRTP--- 128

Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172
             L  + V  VG G IG+ + +RL PF   +    RV    +   E     +E L  +LP
Sbjct: 129 -SLADRRVLIVGYGSIGRAIERRLAPFEVRVT---RVARTAR-PGEQVHGIDE-LPALLP 182

Query: 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI-AGY 231
           + D+VV+  PLT++TRG+ D + +A+M  G L+VN ARG ++DT A+V   +SG + A  
Sbjct: 183 EADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVAELASGRLRAAL 242

Query: 232 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
             DV +P+P P  HP    P   +TPHV G T     R  A V+  L RY  GE
Sbjct: 243 --DVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVRRQLRRYAAGE 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  137 bits (349), Expect = 1e-38
 Identities = 66/179 (36%), Positives = 108/179 (60%), Gaps = 5/179 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+TV  V   +  +VAE  +  +L L R     +++V  G +++ G+    +DL 
Sbjct: 86  AAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFSLDGLL--GFDLH 143

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKTVG +G G+IG+   + LK F C +L +D    +P+L K  G ++  DLD +L + DI
Sbjct: 144 GKTVGVIGTGKIGQAFARILKGFGCRVLAYD-PYPNPELAKL-GVEYV-DLDELLAESDI 200

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
           + ++ PLT +T  + + + IAKMK GV+++N +RG ++DT+A+++A  SG I G   DV
Sbjct: 201 ISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDV 259

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  137 bits (347), Expect = 2e-38
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AAA  G+ V     SN  SVAE  +  I++L R     +     G WN    A  ++++ 
Sbjct: 82  AAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWN--KSATGSHEVR 139

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G +G G IG  L    +     ++++D      +L     A+    L+ +L + D 
Sbjct: 140 GKTLGIIGYGHIGSQLSVLAEALGMRVIFYDIA---EKLPLGN-ARQVSSLEELLAEADF 195

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ P T  T+ M   + IA+MKKG +++N +RG ++D  A+ +A  SGH+AG + DV+
Sbjct: 196 VTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVF 255

Query: 237 NPQPAPKDHPW----RYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
             +PA    P+    + +PN  +TPH+ G+T +AQ      V   L +Y
Sbjct: 256 PEEPASNGEPFSSPLQGLPNVILTPHIGGSTEEAQENIGLEVAGKLVKY 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  136 bits (345), Expect = 4e-38
 Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 27/227 (11%)

Query: 74  VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLL 133
           + +AE  +  IL + +     +      +W +         L GKT+  +G G IG+ + 
Sbjct: 95  IPIAEWIVGYILEIYKGLKKAYKNQKEKKWKMDSSLLE---LYGKTILFLGTGSIGQEIA 151

Query: 134 QRLKPFNCNLL----------YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 183
           +RLK F   ++          Y D+                E+LD +L + DIVV   PL
Sbjct: 152 KRLKAFGMKVIGVNTSGRDVEYFDKCYPL------------EELDEVLKEADIVVNVLPL 199

Query: 184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK 243
           TE+T  +FD+    +MKKG L +N  RG  +D  A+++A  +  I G + DV+  +P PK
Sbjct: 200 TEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPK 259

Query: 244 DHP-WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPV 289
           D P W  + N  +TPH+SG +     R      + L  + +  +   
Sbjct: 260 DSPLWD-LDNVLITPHISGVSEHFNERLFDIFYENLKSFLEDGELLK 305

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  134 bits (341), Expect = 2e-37
 Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 37/229 (16%)

Query: 54  NFLAAAAAGLTVAEVTGSNV-----VSVAEDELMRILILVRNFLPGHHQVISGE--WNVA 106
           +   A   GL +     +NV      ++AE  + + L L+RN      +V  G+  W   
Sbjct: 83  DLDLAKENGLKI-----TNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFRWAPG 137

Query: 107 GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED 166
            +     DL   TVG +G GRIG    +  K F   ++ +D    +P+LEK       + 
Sbjct: 138 LIGREIRDL---TVGIIGTGRIGSAAAKIFKGFGAKVIAYDPYP-NPELEKFLLYY--DS 191

Query: 167 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
           L+ +L + DI+ ++ PLT++   + + +  AKMK G ++VN ARG ++DT+A++DA  SG
Sbjct: 192 LEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSG 251

Query: 227 HIAGYSGDV-----------WNPQPAPKDHPWRY-----MPNQAMTPHV 259
            IAG + D            W+ +    +          MPN  +TPH+
Sbjct: 252 KIAGAALDTYENETGYFNKDWSGKEIEDE---VLKELIAMPNVLITPHI 297

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  128 bits (325), Expect = 4e-35
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V   TG    + AE     IL L RN       + +G W           L 
Sbjct: 87  AAKERGIVVCG-TGGGPTATAELTWALILALARNLPEEDAALRAGGWQTTL----GTGLA 141

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G VG GRIG  + +  + F   ++      +  +     G +     + +    D+
Sbjct: 142 GKTLGIVGLGRIGARVARIGQAFGMRVIAWSS-NLTAERAAAAGVEAAVSKEELFATSDV 200

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++  L+++TRG+   + +A MK   L+VN +RG ++D  A++ A  +G IAG + DV+
Sbjct: 201 VSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVF 260

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
           + +P P DHP R +PN  +TPH+   T +A   +     + +  +  G
Sbjct: 261 DVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  128 bits (324), Expect = 6e-35
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 24/230 (10%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           A    G+ V  V      +VAE     +L L R       +   G+++ AG+  R ++L 
Sbjct: 81  ACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAGL--RGFELA 138

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G VG GRIG+ + +  + F   +L +D V  D +L +  G ++   L+ +L + DI
Sbjct: 139 GKTLGVVGTGRIGRRVARIARGFGMKVLAYDVVP-DEELAERLGFRYV-SLEELLQESDI 196

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV- 235
           + ++ P T +T  + +++  A MK G +++N ARGA++DT+A+V A   G +AG   DV 
Sbjct: 197 ISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVL 256

Query: 236 ------------WNPQPAP-------KDHPWRYMPNQAMTPHVSGTTIDA 266
                       +    +P        DH     PN  +TPHV+  T +A
Sbjct: 257 EQEEVLREEAELFREDVSPEDLKKLLADHALLRKPNVIITPHVAYNTKEA 306

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  127 bits (321), Expect = 1e-34
 Identities = 65/230 (28%), Positives = 96/230 (41%), Gaps = 3/230 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V  V G +  SVAE  +  IL L R        V +G+W          +L 
Sbjct: 78  AATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWK--KGGPIGLELY 135

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
           GKT+G +G G IG +     K      + Y      +   E        + L   L + D
Sbjct: 136 GKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESD 195

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
            ++   P T    G    +    M K  + +NNARG  +  +A +DA     IA  + DV
Sbjct: 196 DLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDV 255

Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
              +P P + P   +PN  +TPH++G T +AQ   A    + L  + KG 
Sbjct: 256 VEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENLLAFLKGG 305

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  123 bits (311), Expect = 3e-33
 Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 24/222 (10%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
            A   G+ +      N  +V E  L  +L L         +V +G W+  G   R  +L 
Sbjct: 80  YAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGIWDREG--NRGVELM 137

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKC 174
           GKTVG +G G +GK   +RL  F C ++ +D+        K  G  +  +  L+T+  + 
Sbjct: 138 GKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDK-------YKNFGDAYAEQVSLETLFKEA 190

Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           DI+ ++ PLT +TRGM +K+ I+  KK    +N ARG ++ T+ +V A  SG I G   D
Sbjct: 191 DILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVKALKSGKILGACLD 250

Query: 235 VW--------NPQPAPKDHPWRYM---PNQAMTPHVSGTTID 265
           V         +    P+   + Y+   P   +TPH++G T +
Sbjct: 251 VLEYEKASFESIFNQPEA--FEYLIKSPKVILTPHIAGWTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  122 bits (309), Expect = 7e-33
 Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 61  AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYD----LE 116
            G  V    G    ++AE  L  IL   +             W V G      +    L 
Sbjct: 84  EGPVVTCARGVAAEAIAEFVLAAILAAAKRL--------PEIW-VKGAEQWRREPLGSLA 134

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           G T+G VG G IG+ L +R       +L    ++   +     G +   DL  +  + D 
Sbjct: 135 GSTLGIVGFGAIGQALARRALALGMRVL---ALRRSGRPSDVPGVEAAADLAELFARSDH 191

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           +V+  PLT +TR + + D +A+ K G+ ++N ARG ++D +A+++A  SG I+  S DV 
Sbjct: 192 LVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVT 251

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           +P+P P+ HP    P   ++PH S    D +   A    + L RY  G+
Sbjct: 252 DPEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQ 300

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  122 bits (309), Expect = 8e-33
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 52  NPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG---- 107
           N +  AA   G+TV    G    SVA+  L  +L L          V +G W  +     
Sbjct: 79  NVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCL 138

Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 167
           + +   +LEGKT+G +G G +G  + +  + F   +L         QL           L
Sbjct: 139 LDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLI-------GQLPGRPARPDRLPL 191

Query: 168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227
           D +LP+ D + ++ PLTE TR +     +A MK G L++N ARG ++D QA+ DA  SGH
Sbjct: 192 DELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGH 251

Query: 228 IAGYSGDVWNPQPAPKDHPWRY--MPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           + G + DV + +P    +P     +P   +TPH +  + +A+ R    + +    +F G+
Sbjct: 252 LGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGK 311

Query: 286 DFPVQN 291
              V +
Sbjct: 312 PLRVVS 317

Length = 317

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  120 bits (304), Expect = 4e-32
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 18/205 (8%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           +VAE  +  IL L+RN    +        ++        +LE +TVG VG G+IG+ + Q
Sbjct: 103 AVAEHTIALILALLRNR--KYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQ 160

Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
           R K F   ++ +D  +  P+LE + G K+   L+ +    DI+ ++ PLT +   M +++
Sbjct: 161 RAKGFGMKVIAYDPFRN-PELEDK-GVKYVS-LEELFKNSDIISLHVPLTPENHHMINEE 217

Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQ--PA 241
               MKKGV+I+N ARG+++DT+A+++A  SG I G   DV              +    
Sbjct: 218 AFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKD 277

Query: 242 PKDHPWRYMPNQAMTPHVSGTTIDA 266
             +      PN  +TPH +  T DA
Sbjct: 278 ALNALLGRRPNVIITPHTAFYTDDA 302

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  119 bits (302), Expect = 2e-31
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 29/184 (15%)

Query: 101 GEWNVAGVAYRAY----DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 156
            E+ ++ +   A      L+GKTVG VG G +G  L +RL+    N+L  D     P+ E
Sbjct: 95  AEYVLSALLVLAQRQGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCD----PPRAE 150

Query: 157 KETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGA 212
            E    F   L+ +L + DI+ ++ PLT      T  + D+D +A +K G +++N +RGA
Sbjct: 151 AEGDPGFV-SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGA 209

Query: 213 IMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM-------TPHVSGTTID 265
           ++D QA++     G       DVW  +P           +  +       TPH++G +++
Sbjct: 210 VIDNQALLALLQRGKDLRVVLDVWENEPE---------IDLELLDKVDIATPHIAGYSLE 260

Query: 266 AQLR 269
            + R
Sbjct: 261 GKAR 264

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  116 bits (294), Expect = 9e-31
 Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 11/228 (4%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR-AYDL 115
           AA A G+ V    G     VA+  +  +L ++R        V +G W     A+     +
Sbjct: 82  AARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAGRW--PKGAFPLTRKV 139

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
            GK VG VG GRIG+ + +RL+ F   + YH R         +   ++   L  +  + D
Sbjct: 140 SGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKP-----DVPYRYYASLLELAAESD 194

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           ++VV  P    TR + + + +  +   GVL+ N ARG+++D  A++ A   G IAG   D
Sbjct: 195 VLVVACPGGPATRHLVNAEVLEALGPDGVLV-NVARGSVVDEAALIAALQEGRIAGAGLD 253

Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
           V+  +P         + N  +TPH++  T++ +      V   L+ +F
Sbjct: 254 VFENEPNVPA-ALLDLDNVVLTPHIASATVETRRAMGDLVLANLEAFF 300

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  115 bits (290), Expect = 5e-30
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLL 133
           +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L 
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 134 QRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192
           QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F 
Sbjct: 162 QRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCIILPLTDETHHLFG 219

Query: 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 252
            ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   +PN
Sbjct: 220 AEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPN 279

Query: 253 QAMTPHVSGTTIDAQLRYAAGVKDML 278
               PH+   T + +   AA   D L
Sbjct: 280 VVAVPHIGSATHETRYNMAACAVDNL 305

Length = 323

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  114 bits (287), Expect = 1e-29
 Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 16/192 (8%)

Query: 101 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 160
           G W        A +     VG +G G +G  + +RL      +    R   D     E  
Sbjct: 120 GVWK-PLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKDI----EGV 171

Query: 161 AKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 218
             F  EE LD  L + DI+V   PLT +TRG+ + + +A++ +G  ++N  RG  +    
Sbjct: 172 TCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEAD 231

Query: 219 VVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT-IDAQLRYAAGVKD 276
           ++ A  SGH++G   DV+  +P P DHP WR  P   +TPH++  T  D+     A    
Sbjct: 232 LLAALDSGHLSGAVLDVFEQEPLPADHPLWR-HPRVTVTPHIAAITDPDSAAAQVAEN-- 288

Query: 277 MLDRYFKGEDFP 288
            + R   GE  P
Sbjct: 289 -IRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  111 bits (278), Expect = 2e-28
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 52  NPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG---- 107
           N + +AA   G+ V  VTG +  +V E  L  I  L  + +  +   +S  W        
Sbjct: 78  NVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCY 137

Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 167
             Y   D+ G T+G  G G +G  + +  +     +LY +       + +E    FEE  
Sbjct: 138 FDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEH--KGASVCREGYTPFEE-- 193

Query: 168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227
             +L + DIV ++ PLTE T+ + + + +A MK    ++N  RG ++D QA++DA  +G 
Sbjct: 194 --VLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGK 251

Query: 228 IAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFK 283
           IAG + DV   +P  KD+P     + +PN  +TPH++  +  A       V   ++ + +
Sbjct: 252 IAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQ 311

Length = 314

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  109 bits (275), Expect = 5e-28
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 21/245 (8%)

Query: 52  NPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEW-------N 104
           N +   A   G+ V  V G +  SVA+     +L L+         V SGE+       +
Sbjct: 76  NVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTH 135

Query: 105 VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE 164
           ++       +++GK  G +G G IGK + +  + F   ++Y+          K    ++E
Sbjct: 136 ISRPLG---EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG------KNKNEEYE 186

Query: 165 E-DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 223
              L+ +L   DI+ ++ PL EKT+ +     +  +K G +++N  RG I++ + +  A 
Sbjct: 187 RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKAL 246

Query: 224 SSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA---MTPHVSGTTIDAQLRYAAGVKDMLDR 280
               I     DV   +P  K+HP   + N+    +TPH++  + +A+      VK+ +  
Sbjct: 247 DEKDI-YAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKD 305

Query: 281 YFKGE 285
           + +G 
Sbjct: 306 FLEGG 310

Length = 311

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  108 bits (273), Expect = 2e-27
 Identities = 73/222 (32%), Positives = 105/222 (47%), Gaps = 20/222 (9%)

Query: 57  AAAAAGLTVAEVTGS---NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAY 113
           AA   G+ VA +      N  S AE  +  +L L+R         +        +     
Sbjct: 100 AATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLR-----KQNEMQISLKARRLGEPIG 154

Query: 114 D-LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR---VKMDPQLEKETGAKFE----- 164
           D L GKTV  +G G IG  L +RL+PF   LL   R    + +  L    G   +     
Sbjct: 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEK 214

Query: 165 ---EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVD 221
              ED+     + DIVV+   LT++T G+ + + ++ MKKG L+VN ARG ++D  AV+ 
Sbjct: 215 GGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLA 274

Query: 222 ACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 263
           A  SGH+ G + DV   +P   D P    PN  +TPHV+G T
Sbjct: 275 ALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVT 316

Length = 347

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  108 bits (271), Expect = 3e-27
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 20/225 (8%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G  +A V   +  ++AE      + L R+      +  +  + V    + + ++ 
Sbjct: 86  AAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVDPFMF-SKEIR 144

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
             TVG +G GRIG    +  K     ++ +D   + P    +    F   LD +L K DI
Sbjct: 145 NSTVGIIGTGRIGLTAAKLFKGLGAKVIGYD---IYPSDAAKDVVTFV-SLDELLKKSDI 200

Query: 177 VVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
           + ++ P +  K   + +K+ I+KMK G +++N ARG + D +A+++A  SG +AG+  DV
Sbjct: 201 ISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDV 260

Query: 236 WNPQPAP--KDHPWRYMPNQA------------MTPHVSGTTIDA 266
            N +     KD     + +              +TPH+   T +A
Sbjct: 261 LNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEA 305

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  108 bits (271), Expect = 3e-27
 Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 22/233 (9%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
            +AE  +   L+L  +FL          W     AY   D  GK VG +G G IG+   +
Sbjct: 91  QIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTAR 150

Query: 135 RLKPFNCNLL-YHDRVKMDPQLEKETG--------------AKF-----EEDLDTML-PK 173
             +     +  Y    +  P+  K+ G              + +     +  L   L   
Sbjct: 151 LAQALGMEVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQD 210

Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
            D++VV+ PLT  T+ +   +    + K+   + N ARG+++DT A+V A  SG I G +
Sbjct: 211 LDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAA 270

Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
            DV +P+P P DHP    PN  +TPHVS  T +   R    +++ L+R  KGE
Sbjct: 271 LDVTDPEPLPADHPLWSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGE 323

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  108 bits (273), Expect = 5e-27
 Identities = 69/216 (31%), Positives = 112/216 (51%), Gaps = 12/216 (5%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AAA  G+ V     SN  SVAE  +  I++L+R     + +   G WN    A  ++++ 
Sbjct: 93  AAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWN--KSAAGSFEVR 150

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AKFEEDLDTMLPKCD 175
           GKT+G VG G IG  L    +     + ++D     P      G A+    L+ +L + D
Sbjct: 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LGNARQVGSLEELLAQSD 205

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
           +V ++ P T  T+ M   + +A MK G +++N +RG ++D  A+ DA  SGH+AG + DV
Sbjct: 206 VVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDV 265

Query: 236 WNPQPAPKDHPW----RYMPNQAMTPHVSGTTIDAQ 267
           +  +P     P+    R + N  +TPH+ G+T +AQ
Sbjct: 266 FPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQ 301

Length = 409

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 170
              DL  +T G VG G +G  L++ L+     +L  D     P+ E E    F   L+ +
Sbjct: 110 EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCD----PPRQEAEGDGDFV-SLERI 164

Query: 171 LPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
           L +CD++ ++TPLT+     TR + D+  +A ++ G  ++N +RGA++D QA+ +A  SG
Sbjct: 165 LEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224

Query: 227 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 286
                  DVW  +  P+            TPH++G ++D + R  A +   L R+F G  
Sbjct: 225 EDLDAVLDVWEGE--PQIDLELADLCTIATPHIAGYSLDGKARGTAQIYQALCRFF-GIP 281

Query: 287 FPVQ 290
             V 
Sbjct: 282 ARVS 285

Length = 381

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 64/217 (29%), Positives = 86/217 (39%), Gaps = 22/217 (10%)

Query: 60  AAGLT--VAEVTGSNVVS--VAEDELMRILILVRNFLPGHHQVISGEWNVA-------GV 108
           AAG    VA  +G  +    VAE  L  IL  VR             W            
Sbjct: 75  AAGFAPEVAVTSGRGLHDGTVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRP 134

Query: 109 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----E 164
           A R   L G  V   G G IG+ L   L      +    R            A F    E
Sbjct: 135 AGRLTTLLGARVLIWGFGSIGQRLAPLLTALGARVTGVAR-------SAGERAGFPVVAE 187

Query: 165 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224
           ++L  +LP+ D++V+  P T  T    D + +A + K   +VN  RGA +D  A+V A  
Sbjct: 188 DELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALE 247

Query: 225 SGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 261
           SG + G + DV   +P P   P    PN  +TPH +G
Sbjct: 248 SGRLGGAALDVTATEPLPASSPLWDAPNLILTPHAAG 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 33/262 (12%)

Query: 41  VFYKGNEYASMNPNFLAAAAAGLTVAEVTG--SNVV----------SVAEDELMRILILV 88
           +  KG          + + +AG+   +V+G   NVV          SVAE     +L   
Sbjct: 38  ILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWA 97

Query: 89  RNFLPGHHQVISGEWNVAGVAYRAYD---LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY 145
           +N       +    +N+    ++      L  K++G +G G IG+ +    K F  N+  
Sbjct: 98  KN-------ICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYA 150

Query: 146 HDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI 205
           + R         +  +    + + ++ K D V+++ PLT++TRGM +   ++  +KG+ I
Sbjct: 151 YTR-----SYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAI 205

Query: 206 VNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 265
           +N AR  ++D   +++   + +   Y  DVW  +P   +       N  ++PHV+G    
Sbjct: 206 INVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPD---NVILSPHVAGGMSG 262

Query: 266 A--QLRYAAGVKDMLDRYFKGE 285
              Q   A   ++ +  +F+G+
Sbjct: 263 EIMQPAVALAFEN-IKNFFEGK 283

Length = 303

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 70.7 bits (173), Expect = 7e-14
 Identities = 63/266 (23%), Positives = 111/266 (41%), Gaps = 49/266 (18%)

Query: 15  ASSGFLRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVV 74
           A +  +RS ++ +    +    K VG    G ++  ++  +L  A  G + A   G N +
Sbjct: 38  ADALMVRSVTKVNESLLAGKPIKFVGTATAGTDH--VDEAWLKQAGIGFSAA--PGCNAI 93

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           +V E     +L+L                         + L  +TVG VG G +G+ L  
Sbjct: 94  AVVEYVFSSLLMLAER--------------------DGFSLHDRTVGIVGVGNVGRRLQA 133

Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGM 190
           RL+      L  D     P+ ++     F   LD ++ + DI+  +TPL +    KT  +
Sbjct: 134 RLEALGIKTLLCD----PPRADRGDEGDFRS-LDELVQEADILTFHTPLFKDGPYKTLHL 188

Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
            D+  I  +K G +++N  RGA++D  A++   + G       DVW  +P          
Sbjct: 189 ADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE--------- 239

Query: 251 PNQAM-------TPHVSGTTIDAQLR 269
            N  +       TPH++G T++ + R
Sbjct: 240 LNVELLKKVDIGTPHIAGYTLEGKAR 265

Length = 378

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 2  AMKRVASSAINAFASS---GFLRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAA 58
          AM+R A  AI AF+SS     L  +   S  +AS+GSKKIVGVFYK  EYA  NPNF+  
Sbjct: 1  AMRRAAQVAIRAFSSSSPAHLLTRALASSSLHASAGSKKIVGVFYKAGEYADKNPNFVGC 60

Query: 59 AAAGLTVAE 67
              L + +
Sbjct: 61 VENALGIRD 69

Length = 386

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 67.5 bits (165), Expect = 8e-13
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTML 171
           Y  E  T+G +G G +G  + Q L+ +   L    R  K  P ++   G    E+L   L
Sbjct: 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGR---EELSAFL 188

Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
            +  +++   P T +T G+ ++  + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248

Query: 232 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQ 267
             DV++ +P P + P W++ P  A+TPHV+  T  A+
Sbjct: 249 MLDVFSREPLPPESPLWQH-PRVAITPHVAAVTRPAE 284

Length = 312

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 54  NFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRA 112
           +   A    L ++ V   +  S+AE  + + + LVR+F     Q    E +        +
Sbjct: 84  DLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHF--NQIQTKVREHDFRWEPPILS 141

Query: 113 YDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHD---RVKMDPQLEKETGAKFEEDLD 168
             ++   V  +G GRIG  + +   K +  +++ +D     K    ++      +++ ++
Sbjct: 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVD------YKDTIE 195

Query: 169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228
             +   DIV ++ P T+    +F+ D     KKG + VN ARG+++DT+A++DA  +G I
Sbjct: 196 EAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI 255

Query: 229 AGYSGDVW 236
            G + D +
Sbjct: 256 KGAALDTY 263

Length = 332

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 18/162 (11%)

Query: 115 LEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETGA------------ 161
           L+G+TVG +G GRIG    + + + F  NL+Y+D +    +LEK   A            
Sbjct: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQSTRLEKFVTAYGQFLKANGEQP 221

Query: 162 ---KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 218
              K    ++ +L + D++ ++  L + T  + +K+R+A MKK  ++VN +RG ++D  A
Sbjct: 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVA 281

Query: 219 VVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 260
           +V+   +  +     DV+  +P  K      M N  + PH++
Sbjct: 282 LVEHLKANPMFRVGLDVFEDEPYMKPG-LADMKNAVVVPHIA 322

Length = 386

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKETGAKFEEDLDTMLPKCDI 176
           TV  +G GRIG    +    F   +  +D         L       +++ +   +   DI
Sbjct: 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT------YKDSVKEAIKDADI 201

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++ P  +++  +FDK     +KKG ++VN ARGA+++T  ++ A + G + G + D +
Sbjct: 202 ISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261

Length = 330

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 171
             +L G  VG +G G  G+++   L  F  ++ Y+ R +  P  E +        L+ +L
Sbjct: 133 PRELTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTR-KPDAEAKGIRYLP--LNELL 189

Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
              D++    P   K   +  ++    +  G ++ N + G   + +A+     +     +
Sbjct: 190 KTVDVICTCLP---KNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIF 246

Query: 232 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
             D      A  D      PN   T   +G T  A  R +  V   L+ Y
Sbjct: 247 DCDT---AGALGDEELLRYPNVICTNKSAGWTRQAFERLSQKVLANLEEY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|224626 COG1712, COG1712, Predicted dinucleotide-utilizing enzyme [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 119 TVGTVGCGRIGKLLLQRLK----PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
            VG VGCG IGK LL+ ++     F    +Y    +   +LE   G +   D+D ++ + 
Sbjct: 2   KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEV 61

Query: 175 DIVV 178
           D+VV
Sbjct: 62  DLVV 65

Length = 255

>gnl|CDD|237343 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 120 VGTVGCGRIGKLLLQRLKP--FNCNLLY-HDR-VKMDPQLEKETGAKFEEDLDTMLPKCD 175
           +G VGCG I  L+ + +     N  L   +DR ++    L  +TGAK    +D ++   D
Sbjct: 4   IGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVD 63

Query: 176 IVV 178
           +VV
Sbjct: 64  LVV 66

Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.96
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.8
PLN02494	477	adenosylhomocysteinase	99.66
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.61
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.57
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.57
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.56
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.55
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.46
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.43
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.42
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.42
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.41
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.41
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.38
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.36
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.35
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.27
PLN02256	304	arogenate dehydrogenase	99.25
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.24
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.24
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.22
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.22
PLN02712	667	arogenate dehydrogenase	99.21
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.2
PLN02858	1378	fructose-bisphosphate aldolase	99.2
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.17
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.16
PLN02858	1378	fructose-bisphosphate aldolase	99.13
PRK08655	437	prephenate dehydrogenase; Provisional	99.1
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.09
PRK05225	487	ketol-acid reductoisomerase; Validated	99.03
PLN02712	667	arogenate dehydrogenase	99.01
PRK07417	279	arogenate dehydrogenase; Reviewed	99.01
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.01
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.98
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.98
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.97
PLN02688	266	pyrroline-5-carboxylate reductase	98.96
PRK08507	275	prephenate dehydrogenase; Validated	98.95
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.95
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.94
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.93
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.89
PRK06545	359	prephenate dehydrogenase; Validated	98.88
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.88
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.87
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.86
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.85
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.84
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.84
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.84
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.83
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.82
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	98.82
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.82
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.8
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.79
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.78
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.78
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.78
PRK08818	370	prephenate dehydrogenase; Provisional	98.78
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.78
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.77
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.75
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.74
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.74
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.73
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.73
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.72
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.72
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.71
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.7
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.68
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.67
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.67
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.66
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.65
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.63
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.63
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.63
PRK07680	273	late competence protein ComER; Validated	98.6
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.59
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.58
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.58
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.56
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.56
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.55
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.51
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.5
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.5
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.46
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.44
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.44
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.43
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.42
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.39
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.37
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.37
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.35
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.34
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.34
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.34
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.32
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.3
PLN00203	519	glutamyl-tRNA reductase	98.28
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.28
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.27
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.25
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.24
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.24
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.22
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.18
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.18
PRK06141	314	ornithine cyclodeaminase; Validated	98.17
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.15
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.14
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.13
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.09
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.08
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.08
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.06
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.04
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.03
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.99
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.99
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.98
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.96
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.95
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.92
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.88
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.88
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.87
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.84
PRK14982	340	acyl-ACP reductase; Provisional	97.84
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.83
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.83
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.83
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.82
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.82
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.8
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.8
PRK07340	304	ornithine cyclodeaminase; Validated	97.8
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.8
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.79
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.79
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.77
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.74
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
PRK08618	325	ornithine cyclodeaminase; Validated	97.74
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.74
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.74
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.73
PRK14031	444	glutamate dehydrogenase; Provisional	97.73
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.73
PLN02477	410	glutamate dehydrogenase	97.72
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.71
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.7
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.67
PRK06046	326	alanine dehydrogenase; Validated	97.67
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.67
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.67
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.66
PRK06444	197	prephenate dehydrogenase; Provisional	97.65
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.65
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.62
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.62
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.62
PRK08291	330	ectoine utilization protein EutC; Validated	97.62
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.61
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.6
PTZ00117	319	malate dehydrogenase; Provisional	97.6
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.59
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.58
PRK14030	445	glutamate dehydrogenase; Provisional	97.57
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.55
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.55
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.55
PRK06823	315	ornithine cyclodeaminase; Validated	97.53
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.49
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.48
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.48
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.47
PRK09414	445	glutamate dehydrogenase; Provisional	97.45
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.42
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.41
PRK06407	301	ornithine cyclodeaminase; Provisional	97.4
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.39
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.38
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.36
PRK06199	379	ornithine cyclodeaminase; Validated	97.36
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.3
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.27
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.27
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.27
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.27
PRK07589	346	ornithine cyclodeaminase; Validated	97.27
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.26
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.26
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.22
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.21
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	97.15
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.15
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.14
PRK00779	304	ornithine carbamoyltransferase; Provisional	97.13
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.12
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.11
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.11
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	97.1
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.09
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.08
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.07
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.03
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.0
PRK02255	338	putrescine carbamoyltransferase; Provisional	97.0
PRK09496	453	trkA potassium transporter peripheral membrane com	97.0
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.99
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.97
PRK06223	307	malate dehydrogenase; Reviewed	96.96
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.95
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.94
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.94
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.92
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.91
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.91
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.89
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.88
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.87
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.87
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.86
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.85
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	96.85
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.85
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.82
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.82
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.81
COG5322	351	Predicted dehydrogenase [General function predicti	96.81
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.8
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.78
PRK02102	331	ornithine carbamoyltransferase; Validated	96.78
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.76
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.76
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.74
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.74
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.73
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	96.73
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.7
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.69
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.68
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.68
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.67
PLN02342	348	ornithine carbamoyltransferase	96.67
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.66
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.65
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.64
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.62
PRK10669	558	putative cation:proton antiport protein; Provision	96.61
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.6
PRK04148	134	hypothetical protein; Provisional	96.59
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.57
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.55
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	96.54
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.54
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.53
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.52
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.52
PLN02527	306	aspartate carbamoyltransferase	96.52
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.51
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.5
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.5
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.5
PRK11579	346	putative oxidoreductase; Provisional	96.48
PRK06270	341	homoserine dehydrogenase; Provisional	96.48
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.47
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.46
PRK12862	763	malic enzyme; Reviewed	96.43
PRK10206	344	putative oxidoreductase; Provisional	96.42
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.41
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.4
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.4
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.4
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.39
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.39
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.39
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.38
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.38
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.37
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.35
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.34
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.33
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.33
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.32
PRK12861	764	malic enzyme; Reviewed	96.28
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.28
PRK05086	312	malate dehydrogenase; Provisional	96.26
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.26
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.25
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.25
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.23
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	96.22
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.2
PLN02740	381	Alcohol dehydrogenase-like	96.19
PRK06349	426	homoserine dehydrogenase; Provisional	96.14
COG2910	211	Putative NADH-flavin reductase [General function p	96.11
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.07
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.03
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.98
CHL00194	317	ycf39 Ycf39; Provisional	95.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	95.97
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	95.95
PRK09496	453	trkA potassium transporter peripheral membrane com	95.94
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	95.91
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	95.91
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.91
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	95.87
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.87
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	95.86
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	95.86
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.85
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.85
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.85
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.84
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.82
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.81
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	95.81
PRK10637	457	cysG siroheme synthase; Provisional	95.81
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.79
PLN02514	357	cinnamyl-alcohol dehydrogenase	95.79
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.79
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.76
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	95.73
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.72
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.72
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	95.69
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	95.67
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	95.6
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.6
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.6
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	95.57
PTZ00325	321	malate dehydrogenase; Provisional	95.56
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	95.56
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.55
PLN02383	344	aspartate semialdehyde dehydrogenase	95.55
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	95.55
PLN02827	378	Alcohol dehydrogenase-like	95.54
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.53
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.53
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	95.5
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.49
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.49
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	95.48
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.47
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.46
PRK15076	431	alpha-galactosidase; Provisional	95.45
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	95.42
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.4
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	95.35
PRK10083	339	putative oxidoreductase; Provisional	95.32
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.32
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	95.31
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.3
PRK08223	287	hypothetical protein; Validated	95.3
PRK06392	326	homoserine dehydrogenase; Provisional	95.27
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	95.25
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.25
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.24
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.23
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.23
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.22
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.18
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.17
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.14
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.11
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.08
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	95.04
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.02
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	94.98
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.98
COG2344	211	AT-rich DNA-binding protein [General function pred	94.97
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	94.97
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	94.96
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	94.96
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	94.94
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	94.92
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	94.92
PLN00106	323	malate dehydrogenase	94.91
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	94.9
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	94.9
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.89
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.87
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.87
PLN02602	350	lactate dehydrogenase	94.85
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.84
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.84
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.78
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.78
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.72
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.71
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.7
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.69
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	94.69
PRK05442	326	malate dehydrogenase; Provisional	94.68
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	94.68
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	94.67
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.66
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.65
PRK08324	681	short chain dehydrogenase; Validated	94.64
PLN03209	576	translocon at the inner envelope of chloroplast su	94.6
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	94.58
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	94.55
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	94.48
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.46
PRK07806	248	short chain dehydrogenase; Provisional	94.43
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	94.43
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	94.42
cd08252	336	AL_MDR Arginate lyase and other MDR family members	94.42
PRK13529	563	malate dehydrogenase; Provisional	94.39
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.38
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.37
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.36
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	94.35
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	94.32
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	94.29
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	94.23
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.17
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	94.17
PRK14805	302	ornithine carbamoyltransferase; Provisional	94.14
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	94.13
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	94.13
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.09
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	94.09
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	94.08
PLN02427	386	UDP-apiose/xylose synthase	94.06
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.04
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	94.03
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.03
PTZ00317	559	NADP-dependent malic enzyme; Provisional	94.02
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.0
PLN02702	364	L-idonate 5-dehydrogenase	94.0
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.99
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.99
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	93.99
PRK06182	273	short chain dehydrogenase; Validated	93.97
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	93.94
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	93.93
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.91
PRK08374	336	homoserine dehydrogenase; Provisional	93.91
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	93.91
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.9
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.88
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	93.87
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	93.85

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-66  Score=485.80  Aligned_cols=259  Identities=35%  Similarity=0.554  Sum_probs=242.4

Q ss_pred             chhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995           22 SSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIS  100 (304)
Q Consensus        22 ~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~  100 (304)
                      +.+++++++ ..+|+||+|++.++|+|    |+|+++++++||.|+|+|+.|+.+||||+++++|++.|+++.++..+++
T Consensus        52 ~~~~v~~~~l~~~~~Lk~I~~~g~Gvd----~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~  127 (324)
T COG0111          52 SVTPVTEEVLAAAPNLKAIGRAGAGVD----NIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRR  127 (324)
T ss_pred             ecCCCCHHHHhhCCCceEEEEcccccc----ccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHc
Confidence            889999987 77899999999999998    5569999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995          101 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       101 ~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~  180 (304)
                      |.|.+..  ..+.+|+||||||||+|.||+.+|+++++|||+|++||+... .+.....++....+|++++++||+|++|
T Consensus       128 g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~-~~~~~~~~~~~~~~Ld~lL~~sDiv~lh  204 (324)
T COG0111         128 GEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP-RERAGVDGVVGVDSLDELLAEADILTLH  204 (324)
T ss_pred             CCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCc-hhhhccccceecccHHHHHhhCCEEEEc
Confidence            9999743  346799999999999999999999999999999999999432 2334445666677999999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS  260 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia  260 (304)
                      +|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.+||||.+|||++|||+|
T Consensus       205 ~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia  284 (324)
T COG0111         205 LPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIG  284 (324)
T ss_pred             CCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          261 GTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       261 ~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      |+|.|+++++...+.+|+.+|++|.++
T Consensus       285 ~~T~ea~~~~~~~~~~~i~~~l~g~~~  311 (324)
T COG0111         285 GSTDEAQERVAEIVAENIVRYLAGGPV  311 (324)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999986

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=8e-66  Score=489.20  Aligned_cols=277  Identities=81%  Similarity=1.274  Sum_probs=258.8

Q ss_pred             hchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCC
Q 021995           24 SRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGE  102 (304)
Q Consensus        24 ~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~  102 (304)
                      +.+++++ .++|+||||++.++|+|++    |+++|.++||.|+|++|+|+.+||||++++||++.|++...++.+++|.
T Consensus       109 ~~~~~e~l~~ap~LK~I~~~g~G~D~i----Dl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~  184 (386)
T PLN03139        109 AYVTAERIKKAKNLELLLTAGIGSDHI----DLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGE  184 (386)
T ss_pred             CCCCHHHHhhCCCccEEEECCcccccc----CHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCC
Confidence            4688776 7899999999999999855    5999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       103 w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      |........+++|.|++|||||+|+||+.+|++|++|||+|++||++..+.+.....|+...+++++++++||+|++|+|
T Consensus       185 W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lP  264 (386)
T PLN03139        185 WNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTP  264 (386)
T ss_pred             CccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCC
Confidence            98543223467999999999999999999999999999999999997655555566677777799999999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~  262 (304)
                      ++++|+++|+++.|++||+|++|||++||++||+++|+++|++|+|.||+||||++||+|.++|||.+||+++|||+||.
T Consensus       265 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~  344 (386)
T PLN03139        265 LTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGT  344 (386)
T ss_pred             CCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCCCCC
Q 021995          263 TIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  304 (304)
Q Consensus       263 t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~~~~  304 (304)
                      |.+++.++...+.+||.+|++|++++.+|.|+..|.+.++|+
T Consensus       345 t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i~~~~~~~~~~~  386 (386)
T PLN03139        345 TIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ  386 (386)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCCCcceeecCCccccccC
Confidence            999999999999999999999999999999999999999986

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=6.8e-65  Score=475.06  Aligned_cols=265  Identities=28%  Similarity=0.420  Sum_probs=241.0

Q ss_pred             cccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhh
Q 021995           17 SGFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGH   95 (304)
Q Consensus        17 ~~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~   95 (304)
                      ++++.+..++++++ +++|+||+|++.++|+|+    +|+++|.++||.|+|+||+++.+||||++++||+++|++...+
T Consensus        47 d~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~d~----id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~  122 (323)
T PRK15409         47 EGLLGSGEKVDAALLEKMPKLRAASTISVGYDN----FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVA  122 (323)
T ss_pred             eEEEEcCCCCCHHHHhhCCCCeEEEECceeccc----ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHH
Confidence            35555556888886 789999999999999984    5699999999999999999999999999999999999999999


Q ss_pred             HHHHhCCccccc-ccccccccCCCEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc
Q 021995           96 HQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK  173 (304)
Q Consensus        96 ~~~~~~~w~~~~-~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~  173 (304)
                      +.+++|.|.... ....+.+|.|+|+||||+|+||+.+|++++ +|||+|++||+... .+.....++.+. ++++++++
T Consensus       123 ~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~-~~~~~~~~~~~~-~l~ell~~  200 (323)
T PRK15409        123 ERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH-KEAEERFNARYC-DLDTLLQE  200 (323)
T ss_pred             HHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCc-hhhHHhcCcEec-CHHHHHHh
Confidence            999999996431 112467999999999999999999999998 99999999998642 233345566654 89999999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCe
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  253 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv  253 (304)
                      ||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+|.++|||.+|||
T Consensus       201 sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nv  280 (323)
T PRK15409        201 SDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNV  280 (323)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          254 AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       254 ~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ++|||+||.|.+++.++...+.+||.+|++|+++
T Consensus       281 ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~  314 (323)
T PRK15409        281 VAVPHIGSATHETRYNMAACAVDNLIDALQGKVE  314 (323)
T ss_pred             EEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999976

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-64  Score=478.38  Aligned_cols=275  Identities=47%  Similarity=0.827  Sum_probs=254.8

Q ss_pred             hhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhC
Q 021995           23 SSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISG  101 (304)
Q Consensus        23 ~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~  101 (304)
                      ++.+++++ +++|+||||++.++|+|++    |+++|.++||+|+|++|+++.+||||++++||++.|++..+++.+++|
T Consensus       101 ~~~~~~e~l~~~p~LK~I~~~g~G~D~i----d~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g  176 (385)
T PRK07574        101 PAYLTAERIAKAPNLKLAITAGIGSDHV----DLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG  176 (385)
T ss_pred             CCCCCHHHHhhCCCCcEEEECCcccccc----cHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhC
Confidence            35688776 7899999999999999854    599999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC
Q 021995          102 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       102 ~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~  181 (304)
                      .|........+++|.|++|||||+|+||+.+|++|++|||+|++|||+..+.+.....++....++++++++||+|++|+
T Consensus       177 ~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~l  256 (385)
T PRK07574        177 GWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHC  256 (385)
T ss_pred             CCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcC
Confidence            99864322246789999999999999999999999999999999999765445555667776679999999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCc
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~  261 (304)
                      |++++|+++|+++.|++||+|++|||+|||++||+++|++||++|+|+||+||||++||+|.+||||.+|||++|||+||
T Consensus       257 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag  336 (385)
T PRK07574        257 PLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISG  336 (385)
T ss_pred             CCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCC
Q 021995          262 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  301 (304)
Q Consensus       262 ~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~  301 (304)
                      .|.++++++...+.+||.+|++|+++..++.|+..+.++|
T Consensus       337 ~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~~  376 (385)
T PRK07574        337 TTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLAG  376 (385)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCcccC
Confidence            9999999999999999999999999988999999988887

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=3.3e-64  Score=468.89  Aligned_cols=259  Identities=36%  Similarity=0.600  Sum_probs=241.9

Q ss_pred             hhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhC
Q 021995           23 SSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISG  101 (304)
Q Consensus        23 ~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~  101 (304)
                      ...+++.+ +++|+||+|+..++|+|+    +|+++|+++||.|+|+|++++++||||++++||++.|++...++.+++|
T Consensus        53 ~~~i~~~~l~~~p~LKlIa~~~~G~D~----vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g  128 (324)
T COG1052          53 NDRIDAEVLEKLPGLKLIATRSAGYDN----VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREG  128 (324)
T ss_pred             CCCcCHHHHHhCCCcEEEEEeccccCc----ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcC
Confidence            67788886 778999999999999995    5699999999999999999999999999999999999999999999999


Q ss_pred             Cccccc--ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          102 EWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       102 ~w~~~~--~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                      +|...+  ....+.+++|||+||||+|+||+++|+++++|||+|.+|+|++. ++..+..+..+.+ +++++++||+|++
T Consensus       129 ~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l  206 (324)
T COG1052         129 NWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISL  206 (324)
T ss_pred             cccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEE
Confidence            998763  22356789999999999999999999999999999999999876 5555666677774 9999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCC---eEEc
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN---QAMT  256 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~n---v~lT  256 (304)
                      |||++++|+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||.+.++||+.++|   |++|
T Consensus       207 ~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvlt  286 (324)
T COG1052         207 HCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLT  286 (324)
T ss_pred             eCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEc
Confidence            9999999999999999999999999999999999999999999999999999999999999988999998877   9999


Q ss_pred             cCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          257 PHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       257 PHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ||+|++|.|++.+|...+.+|+..|++|+..
T Consensus       287 PHia~at~ea~~~m~~~~~~nl~~~~~g~~~  317 (324)
T COG1052         287 PHIASATEEARKAMAELALENLEAFFDGGVP  317 (324)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999998876

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-64  Score=467.98  Aligned_cols=262  Identities=27%  Similarity=0.439  Sum_probs=237.1

Q ss_pred             ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995           18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH   96 (304)
Q Consensus        18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~   96 (304)
                      .++...+++++++ +++|+||+|++.++|+|++    |+++|.++||.|+|+||+++.+||||++++||+++|++..+++
T Consensus        48 ~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i----d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~  123 (317)
T PRK06487         48 VAISNKVALDAAALAAAPQLKLILVAATGTNNV----DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQ  123 (317)
T ss_pred             EEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc----CHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHH
Confidence            4555566788876 7789999999999999854    5999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcccccc----cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC
Q 021995           97 QVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP  172 (304)
Q Consensus        97 ~~~~~~w~~~~~----~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~  172 (304)
                      .+++|.|.....    ...+++|.||||||||+|+||+.+|+++++|||+|++||+.... .     .... .+++++++
T Consensus       124 ~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~~-~~l~ell~  196 (317)
T PRK06487        124 AVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPDR-LPLDELLP  196 (317)
T ss_pred             HHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----cccc-cCHHHHHH
Confidence            999999975321    12346899999999999999999999999999999999985321 1     1222 48999999


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccC--C
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY--M  250 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~--~  250 (304)
                      +||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++.++|||.  +
T Consensus       197 ~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~  276 (317)
T PRK06487        197 QVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDI  276 (317)
T ss_pred             hCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999995  8


Q ss_pred             CCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021995          251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQ  290 (304)
Q Consensus       251 ~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~  290 (304)
                      |||++|||+||+|.++++++...+.+||.+|++|+|++.+
T Consensus       277 pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~v  316 (317)
T PRK06487        277 PRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRVV  316 (317)
T ss_pred             CCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            9999999999999999999999999999999999987543

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-63  Score=463.87  Aligned_cols=258  Identities=22%  Similarity=0.367  Sum_probs=234.2

Q ss_pred             ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995           18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH   96 (304)
Q Consensus        18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~   96 (304)
                      .++...+++++++ +.+|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++
T Consensus        45 ~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~  120 (311)
T PRK08410         45 IIITNKVVIDKEVLSQLPNLKLICITATGTNN----VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDR  120 (311)
T ss_pred             EEEECCCCCCHHHHhhCCCCeEEEEccccccc----ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHH
Confidence            4454566788886 788999999999999985    55999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcccccc-c---ccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC
Q 021995           97 QVISGEWNVAGV-A---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP  172 (304)
Q Consensus        97 ~~~~~~w~~~~~-~---~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~  172 (304)
                      .+++|.|.+... .   ..+++|.||||||||+|+||+.+|+++++|||+|++|||+....    ..++.. .+++++++
T Consensus       121 ~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~~-~~l~ell~  195 (311)
T PRK08410        121 YVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYER-VSLEELLK  195 (311)
T ss_pred             HHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCcee-ecHHHHhh
Confidence            999999975321 0   12468999999999999999999999999999999999964321    223443 48999999


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCC--
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM--  250 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~--  250 (304)
                      +||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|. |+||||++||++.++|||.+  
T Consensus       196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~  274 (311)
T PRK08410        196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKN  274 (311)
T ss_pred             cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCC
Confidence            999999999999999999999999999999999999999999999999999999999 99999999999999999986  


Q ss_pred             -CCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCC
Q 021995          251 -PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE  285 (304)
Q Consensus       251 -~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~  285 (304)
                       |||++|||+||+|.+++.++...+.+||.+|++|+
T Consensus       275 ~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~  310 (311)
T PRK08410        275 KEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG  310 (311)
T ss_pred             CCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence             89999999999999999999999999999999986

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-62  Score=457.38  Aligned_cols=258  Identities=26%  Similarity=0.417  Sum_probs=233.0

Q ss_pred             ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995           18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH   96 (304)
Q Consensus        18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~   96 (304)
                      .++.+.+++++++ .++|+||+|++.++|+|+    +|+++|.++||.|+|+||+++.+||||++++||++.|++...++
T Consensus        47 ~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~  122 (314)
T PRK06932         47 IVITSKVLFTRETLAQLPKLKLIAITATGTNN----VDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYR  122 (314)
T ss_pred             EEEEeCCCCCHHHHhhCcCCeEEEEecccccc----cCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHH
Confidence            4555667788776 789999999999999985    45899999999999999999999999999999999999999999


Q ss_pred             HHHhCCccccc-c---cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC
Q 021995           97 QVISGEWNVAG-V---AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP  172 (304)
Q Consensus        97 ~~~~~~w~~~~-~---~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~  172 (304)
                      .++++.|.... .   ...+++|.|+||||||+|.||+.+|+++++|||+|++|++.... .    ... .+.+++++++
T Consensus       123 ~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~----~~~-~~~~l~ell~  196 (314)
T PRK06932        123 DQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V----CRE-GYTPFEEVLK  196 (314)
T ss_pred             HHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c----ccc-ccCCHHHHHH
Confidence            99999997531 1   11346899999999999999999999999999999999975321 1    111 2358999999


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCcc----
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR----  248 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~----  248 (304)
                      +||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++.++|||    
T Consensus       197 ~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~  276 (314)
T PRK06932        197 QADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAK  276 (314)
T ss_pred             hCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             CCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCC
Q 021995          249 YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE  285 (304)
Q Consensus       249 ~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~  285 (304)
                      .+|||++|||+||+|.++++++...+.+||++|++|+
T Consensus       277 ~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g  313 (314)
T PRK06932        277 RLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG  313 (314)
T ss_pred             CCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            4899999999999999999999999999999999875

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=9.7e-62  Score=456.10  Aligned_cols=259  Identities=31%  Similarity=0.494  Sum_probs=236.7

Q ss_pred             chhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995           22 SSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIS  100 (304)
Q Consensus        22 ~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~  100 (304)
                      +.+++++++ +++|+||||+++++|+|+    +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++
T Consensus        53 ~~~~~~~~~l~~~p~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~  128 (333)
T PRK13243         53 LSERIDCEVFEAAPRLRIVANYAVGYDN----IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRS  128 (333)
T ss_pred             CCCCCCHHHHhhCCCCeEEEecCccccc----cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHc
Confidence            345788887 788999999999999985    559999999999999999999999999999999999999999999999


Q ss_pred             CCcccccc-----cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCC
Q 021995          101 GEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD  175 (304)
Q Consensus       101 ~~w~~~~~-----~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aD  175 (304)
                      |.|.....     ...+.+|.|++|||||+|.||+.+|++|++|||+|++|||++.. ......++.. .++++++++||
T Consensus       129 g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~-~~l~ell~~aD  206 (333)
T PRK13243        129 GEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAEKELGAEY-RPLEELLRESD  206 (333)
T ss_pred             CCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHHHcCCEe-cCHHHHHhhCC
Confidence            99974311     11357899999999999999999999999999999999997543 2334455554 48999999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      +|++|+|++++|+++++++.|+.||+|++|||+|||++||+++|+++|++|+|.||+||||++||++ ++|||.+|||++
T Consensus       207 iV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvil  285 (333)
T PRK13243        207 FVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVL  285 (333)
T ss_pred             EEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 899999999999


Q ss_pred             ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      |||+||+|.+++.++...+.+||.+|++|+++
T Consensus       286 TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~  317 (333)
T PRK13243        286 APHIGSATFEAREGMAELVAENLIAFKRGEVP  317 (333)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999976

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-61  Score=464.57  Aligned_cols=264  Identities=29%  Similarity=0.456  Sum_probs=239.8

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      +++.+++++++ +.+|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+
T Consensus        59 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~  134 (409)
T PRK11790         59 IRSRTQLTEEVLAAAEKLVAIGCFCIGTNQ----VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKA  134 (409)
T ss_pred             EeCCCCCCHHHHhhCCCCeEEEECceeccc----ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            45667888887 778999999999999985    5699999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      ++|.|.+..  ..+.+|.||||||||+|+||+.+|+++++|||+|++||++...    ...++....++++++++||+|+
T Consensus       135 ~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVs  208 (409)
T PRK11790        135 HRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVS  208 (409)
T ss_pred             HcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEE
Confidence            999998643  2467999999999999999999999999999999999985421    1123445568999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCC----CCCccCCCCeE
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK----DHPWRYMPNQA  254 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~----~~~l~~~~nv~  254 (304)
                      +|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++.    ++|||.+|||+
T Consensus       209 lh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvi  288 (409)
T PRK11790        209 LHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVI  288 (409)
T ss_pred             EcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999886    47999999999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCcee
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYI  293 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~  293 (304)
                      +|||+||+|.++++++...+.+|+.+|++|+++ +.+|..
T Consensus       289 lTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~~  328 (409)
T PRK11790        289 LTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNFP  328 (409)
T ss_pred             ECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcceecc
Confidence            999999999999999999999999999998877 555543

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.6e-60  Score=449.82  Aligned_cols=262  Identities=30%  Similarity=0.357  Sum_probs=234.9

Q ss_pred             ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCC---ChhHHHHHHHHHHHHHHhCcch
Q 021995           18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGS---NVVSVAEDELMRILILVRNFLP   93 (304)
Q Consensus        18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~---~~~~vAE~al~~~L~~~R~~~~   93 (304)
                      .++.....+++.+ ..+|+||+|++.++|+|++    |+++|.++||.|+|+|++   ++.+||||+++++|+++|++..
T Consensus        64 ~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i----d~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~  139 (347)
T PLN02928         64 ICVPKMMRLDADIIARASQMKLIMQFGVGLEGV----DVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNE  139 (347)
T ss_pred             EEEECCCCCCHHHHhcCCCceEEEECCcccCcC----cHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHH
Confidence            3444456788776 7789999999999999855    599999999999999986   7899999999999999999999


Q ss_pred             hhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH------------hcCc
Q 021995           94 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK------------ETGA  161 (304)
Q Consensus        94 ~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~------------~~g~  161 (304)
                      ..+.++++.|..    ..+.+|.|+++||||+|.||+.+|++|++|||+|++|||+........            ....
T Consensus       140 ~~~~~~~~~w~~----~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~  215 (347)
T PLN02928        140 MQISLKARRLGE----PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG  215 (347)
T ss_pred             HHHHHHcCCccc----ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC
Confidence            999999999964    235689999999999999999999999999999999999642211110            0012


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCC
Q 021995          162 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  241 (304)
Q Consensus       162 ~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~  241 (304)
                       ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+
T Consensus       216 -~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~  294 (347)
T PLN02928        216 -GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF  294 (347)
T ss_pred             -cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence             3458999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021995          242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP  288 (304)
Q Consensus       242 ~~~~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~  288 (304)
                      +.++|||.+|||++|||+||+|.++++++...+.+|+.+|++|+++.
T Consensus       295 ~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~  341 (347)
T PLN02928        295 DPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLT  341 (347)
T ss_pred             CCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999999999999999999873

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=3.3e-60  Score=469.70  Aligned_cols=267  Identities=33%  Similarity=0.519  Sum_probs=244.0

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      .++.+++++++ +++|+||||++.++|+|+    +|+++|.++||.|+|+||+++.+||||++++||+++|++..+++.+
T Consensus        46 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~  121 (525)
T TIGR01327        46 VRSATKVTEEVIAAAPKLKVIGRAGVGVDN----IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASL  121 (525)
T ss_pred             EcCCCCcCHHHHhhCCCceEEEECCcccch----hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            35667899887 778999999999999984    5699999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      ++|.|.+..  ..+.+|.||+|||||+|+||+.+|++|++|||+|++|||+. +.+...+.++...+++++++++||+|+
T Consensus       122 ~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~~~~l~ell~~aDvV~  198 (525)
T TIGR01327       122 KEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGVELVDDLDELLARADFIT  198 (525)
T ss_pred             HcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCCEEcCCHHHHHhhCCEEE
Confidence            999998643  24678999999999999999999999999999999999853 334455667766668999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccC
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH  258 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPH  258 (304)
                      +|+|++++|+++++++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+ .++|||.+|||++|||
T Consensus       199 l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPH  277 (525)
T TIGR01327       199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPH  277 (525)
T ss_pred             EccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCC
Confidence            999999999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCceee
Q 021995          259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV  294 (304)
Q Consensus       259 ia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~~  294 (304)
                      +|++|.+++.++...+.+|+.+|++|+++ +.+|.+.
T Consensus       278 ia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~  314 (525)
T TIGR01327       278 LGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPG  314 (525)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCC
Confidence            99999999999999999999999999976 5555543

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=5.2e-60  Score=450.46  Aligned_cols=265  Identities=22%  Similarity=0.270  Sum_probs=233.2

Q ss_pred             chhchhHHH-hcCCC--cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           22 SSSRFSRHY-ASSGS--KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        22 ~~~~~~~~l-~~~~~--lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      ..+.+++++ +.+|+  ||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+
T Consensus        70 ~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~----iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~  145 (386)
T PLN02306         70 LTEDWGETLFSALSKAGGKAFSNMAVGYNN----VDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFM  145 (386)
T ss_pred             CCCCcCHHHHHhCCcCCceEEEECCccccc----ccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            346788887 77775  6999999999985    4599999999999999999999999999999999999999999999


Q ss_pred             HhCCcccc-cccccccccCCCEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhH--HHhcC------------ce
Q 021995           99 ISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EKETG------------AK  162 (304)
Q Consensus        99 ~~~~w~~~-~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~--~~~~g------------~~  162 (304)
                      ++|.|... .....+.+|.|+||||||+|.||+.+|++++ +|||+|++||++......  ....+            ..
T Consensus       146 ~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  225 (386)
T PLN02306        146 RAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK  225 (386)
T ss_pred             HcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccccccccccccccc
Confidence            99988532 1112467899999999999999999999985 999999999986532111  01111            12


Q ss_pred             ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC
Q 021995          163 FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP  242 (304)
Q Consensus       163 ~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~  242 (304)
                      ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++
T Consensus       226 ~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~  305 (386)
T PLN02306        226 RASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM  305 (386)
T ss_pred             ccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC
Confidence            23589999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             CCCCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCc
Q 021995          243 KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQN  291 (304)
Q Consensus       243 ~~~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n  291 (304)
                       ++|||++|||++|||+||+|.++++++...+.+||.+|++|+++ +.+|
T Consensus       306 -~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        306 -KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             -cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence             47899999999999999999999999999999999999999988 5555

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-60  Score=429.56  Aligned_cols=266  Identities=32%  Similarity=0.505  Sum_probs=249.1

Q ss_pred             cccchhchhHHH-h-cCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995           19 FLRSSSRFSRHY-A-SSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH   96 (304)
Q Consensus        19 ~~~~~~~~~~~l-~-~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~   96 (304)
                      .+||.|++++++ + .+.+||+|++.++|+|    |+|+.+|.++||.|.|+|.+|+.++||+++++++++.|++.+...
T Consensus        52 iVrs~tkvtadvl~aa~~~lkvVgrag~G~d----NVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~  127 (406)
T KOG0068|consen   52 IVRSKTKVTADVLEAAAGGLKVVGRAGIGVD----NVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASA  127 (406)
T ss_pred             EEEeCCeecHHHHHhhcCCeEEEEecccCcc----ccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhe
Confidence            689999999997 4 4678999999999998    778999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCE
Q 021995           97 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI  176 (304)
Q Consensus        97 ~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv  176 (304)
                      .+++|+|++..  +.|.+|.|||+||+|+|+||+.+|++++.+||+|++||+- .+.+.+...|++.. +++|+++.||+
T Consensus       128 s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi-~~~~~~~a~gvq~v-sl~Eil~~ADF  203 (406)
T KOG0068|consen  128 SMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPI-TPMALAEAFGVQLV-SLEEILPKADF  203 (406)
T ss_pred             eeecCceeecc--eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCC-CchHHHHhccceee-eHHHHHhhcCE
Confidence            99999999876  4688999999999999999999999999999999999984 35667788898876 89999999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCC--CCCccCCCCeE
Q 021995          177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK--DHPWRYMPNQA  254 (304)
Q Consensus       177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~--~~~l~~~~nv~  254 (304)
                      |.+|+|++|+|+++++.+.|++||+|..+||++||.+||+++|++||++|++.||++|||+.||...  ++.|..+|||+
T Consensus       204 itlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi  283 (406)
T KOG0068|consen  204 ITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVI  283 (406)
T ss_pred             EEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCcee
Confidence            9999999999999999999999999999999999999999999999999999999999999999765  78899999999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCce
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNY  292 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~  292 (304)
                      +|||+|++|.|++.+++..+.+++..|.+|.....+|.
T Consensus       284 ~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna  321 (406)
T KOG0068|consen  284 VTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNA  321 (406)
T ss_pred             ecCccccchHHHHHHHHHHHHHHHHHHhccCccceech
Confidence            99999999999999999999999999999955565664

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-59  Score=463.25  Aligned_cols=265  Identities=31%  Similarity=0.522  Sum_probs=242.7

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      .++.+++++++ +++|+||||++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+
T Consensus        48 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~  123 (526)
T PRK13581         48 VRSATKVTAEVLEAAKNLKVIGRAGVGVDN----VDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASL  123 (526)
T ss_pred             EcCCCCCCHHHHhhCCCCeEEEECCccccc----ccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            35567888887 778999999999999985    5699999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      ++|.|.+..  ..+.+|.||+|||||+|+||+.+|++|++|||+|++|||+. +.+.....++... ++++++++||+|+
T Consensus       124 ~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~~-~l~ell~~aDiV~  199 (526)
T PRK13581        124 KAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGVELV-SLDELLARADFIT  199 (526)
T ss_pred             HcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCCEEE-cHHHHHhhCCEEE
Confidence            999997643  24678999999999999999999999999999999999864 3344456677766 8999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccC
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH  258 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPH  258 (304)
                      +|+|++++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++ ++|||.+|||++|||
T Consensus       200 l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPH  278 (526)
T PRK13581        200 LHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPH  278 (526)
T ss_pred             EccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999976 899999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCcee
Q 021995          259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYI  293 (304)
Q Consensus       259 ia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~  293 (304)
                      +|++|.++++++...+.+|+.+|++|+++ +.+|..
T Consensus       279 ia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~  314 (526)
T PRK13581        279 LGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLP  314 (526)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCC
Confidence            99999999999999999999999999987 444443

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.3e-57  Score=420.90  Aligned_cols=251  Identities=40%  Similarity=0.649  Sum_probs=236.4

Q ss_pred             hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccc
Q 021995           31 ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY  110 (304)
Q Consensus        31 ~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~  110 (304)
                      ..+|++|+|.++++|+|++    |+++|++|||+|+|+|+.+..+|||++++++|.+.|++..+++++++|.|.+.....
T Consensus        80 a~~p~lK~i~t~~vG~D~v----Dl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~  155 (336)
T KOG0069|consen   80 ALSPNLKLIVTMSVGYDHV----DLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWP  155 (336)
T ss_pred             hcCCCeeEEEEeecccchh----hHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCcc
Confidence            3459999999999999965    599999999999999999999999999999999999999999999999995443334


Q ss_pred             cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      .+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.+. .++++++.+||+|++|||+|++|+++
T Consensus       156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~-~d~~~~~~~sD~ivv~~pLt~~T~~l  234 (336)
T KOG0069|consen  156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEF-VDIEELLANSDVIVVNCPLTKETRHL  234 (336)
T ss_pred             ccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccc-cCHHHHHhhCCEEEEecCCCHHHHHH
Confidence            57789999999999999999999999999988999999887777777777764 58999999999999999999999999


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +|++.|.+||+|+++||++||.++|++++++||++|+|.|++||||++|| +.++||++++|+++|||+++.|.+++.+|
T Consensus       235 iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m  313 (336)
T KOG0069|consen  235 INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKM  313 (336)
T ss_pred             hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEecccccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 021995          271 AAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       271 ~~~~~~~l~~~~~g~~~  287 (304)
                      +..+..|+.+++.|+|+
T Consensus       314 ~~~v~~n~~~~~~g~~~  330 (336)
T KOG0069|consen  314 AEIVLNNLLAFFSGKPL  330 (336)
T ss_pred             HHHHHHHHHHHHccCCC
Confidence            99999999999999988

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-57  Score=427.60  Aligned_cols=261  Identities=18%  Similarity=0.237  Sum_probs=232.3

Q ss_pred             cccc-chhchhHHH-hcCC--CcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcch
Q 021995           18 GFLR-SSSRFSRHY-ASSG--SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLP   93 (304)
Q Consensus        18 ~~~~-~~~~~~~~l-~~~~--~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~   93 (304)
                      +++. ..+++++++ +++|  +||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..
T Consensus        48 ~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~  123 (330)
T PRK12480         48 GVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDM----YDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPD  123 (330)
T ss_pred             EEEEecCCCCCHHHHHhhhhcCceEEEecccccch----hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            4443 445899986 7776  89999999999985    56999999999999999999999999999999999999999


Q ss_pred             hhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc
Q 021995           94 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK  173 (304)
Q Consensus        94 ~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~  173 (304)
                      +++.+++|.|.+... ..+++|.|++|||||+|.||+.+|++|++||++|++||+++.....    ......++++++++
T Consensus       124 ~~~~~~~~~~~w~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l~ell~~  198 (330)
T PRK12480        124 IERRVQAHDFTWQAE-IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSVKEAIKD  198 (330)
T ss_pred             HHHHHHhCCcccccc-cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCHHHHHhc
Confidence            889999987654321 2467899999999999999999999999999999999987532211    12344589999999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-----------
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-----------  242 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-----------  242 (304)
                      ||+|++|+|.+++|.++++++.|++||+|++|||+|||.+||+++|+++|++|+|.||+||||++||++           
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~  278 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDID  278 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999962           


Q ss_pred             --CCCCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          243 --KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       243 --~~~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                        ..+|||.+|||++|||+|++|.++++++...+.+|+.+|++|+..
T Consensus       279 ~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~  325 (330)
T PRK12480        279 DKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTC  325 (330)
T ss_pred             chhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence              124799999999999999999999999999999999999999876

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=8.2e-57  Score=418.73  Aligned_cols=260  Identities=20%  Similarity=0.271  Sum_probs=223.2

Q ss_pred             HHhcCCCcEEEEEeeecccCCCCccc-HHHHHhCCcEEEEcCC-CChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccc
Q 021995           29 HYASSGSKKIVGVFYKGNEYASMNPN-FLAAAAAGLTVAEVTG-SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA  106 (304)
Q Consensus        29 ~l~~~~~lk~i~~~~~G~d~~~~~~d-~~~~~~~gI~v~n~~g-~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~  106 (304)
                      .+...++||||++.++|+|+++.... ...+.++||.|+|+++ .++.+||||++++||++.|++..+...++++.|...
T Consensus        50 ~~l~~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~  129 (312)
T PRK15469         50 EMLAGRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL  129 (312)
T ss_pred             HHhccCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC
Confidence            33345899999999999997631000 0114568999999864 689999999999999999999988888899999742


Q ss_pred             cccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          107 GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       107 ~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                          ...++.|+||||||+|.||+.+|++|++|||+|.+||++..........  ....++++++++||+|++|+|+|++
T Consensus       130 ----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~--~~~~~l~e~l~~aDvvv~~lPlt~~  203 (312)
T PRK15469        130 ----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF--AGREELSAFLSQTRVLINLLPNTPE  203 (312)
T ss_pred             ----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee--cccccHHHHHhcCCEEEECCCCCHH
Confidence                3457999999999999999999999999999999999865432111111  1235899999999999999999999


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHH
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDA  266 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~  266 (304)
                      |+++++++.|++||+|++|||+|||++||+++|+++|++|+|.||+||||++||+|.++|||.+|||++|||+||.|.+.
T Consensus       204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~  283 (312)
T PRK15469        204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA  283 (312)
T ss_pred             HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCceeecCCc
Q 021995          267 QLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGE  298 (304)
Q Consensus       267 ~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~  298 (304)
                        ++...+.+|+++|++|+++  .|.|+++..
T Consensus       284 --~~~~~~~~n~~~~~~g~~~--~~~V~~~~g  311 (312)
T PRK15469        284 --EAVEYISRTIAQLEKGERV--CGQVDRARG  311 (312)
T ss_pred             --HHHHHHHHHHHHHHcCCCC--cccCCcccC
Confidence              5678889999999999986  677766543

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=3.2e-56  Score=418.66  Aligned_cols=260  Identities=22%  Similarity=0.275  Sum_probs=233.2

Q ss_pred             ccchhchhHHH-hcCCC--cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995           20 LRSSSRFSRHY-ASSGS--KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH   96 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~--lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~   96 (304)
                      +++.+++++++ +.+|+  ||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||+++|++...++
T Consensus        51 ~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~----id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~  126 (332)
T PRK08605         51 LSQQIPLSEAIYKLLNELGIKQIAQRSAGFDT----YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQT  126 (332)
T ss_pred             EecCCCCCHHHHHhhhhcCceEEEEcccccch----hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHH
Confidence            45668899887 77886  9999999999985    56999999999999999999999999999999999999999989


Q ss_pred             HHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHh-ccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCC
Q 021995           97 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD  175 (304)
Q Consensus        97 ~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l-~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aD  175 (304)
                      .+++|.|.+... ..+++|.|++|||||+|.||+.+|++| ++||++|++||++....  . ...+....++++++++||
T Consensus       127 ~~~~~~~~~~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aD  202 (332)
T PRK08605        127 KVREHDFRWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGAD  202 (332)
T ss_pred             HHHhCCcccccc-cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCC
Confidence            999998854321 246789999999999999999999999 78999999999875322  1 123444568999999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC--CCCCC--------
Q 021995          176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP--APKDH--------  245 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep--~~~~~--------  245 (304)
                      +|++|+|.++.|+++++++.++.||+|++|||++||.++|+++|+++|++|+|.||+||||++||  +|.++        
T Consensus       203 vIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~  282 (332)
T PRK08605        203 IVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDP  282 (332)
T ss_pred             EEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999998  45554        


Q ss_pred             ---CccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          246 ---PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       246 ---~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                         +||.+|||++|||+|++|.++++++...+.+|+.+|++|++.
T Consensus       283 ~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~  327 (332)
T PRK08605        283 LLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTT  327 (332)
T ss_pred             hhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence               499999999999999999999999999999999999999876

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-55  Score=408.11  Aligned_cols=245  Identities=22%  Similarity=0.374  Sum_probs=219.1

Q ss_pred             hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccc
Q 021995           31 ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY  110 (304)
Q Consensus        31 ~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~  110 (304)
                      ..+++||||++.++|+|++    |+++|.+++|.++| +|.++.+||||++++||++.|++....+.+++|.|...    
T Consensus        45 ~~~~~Lk~I~~~~aG~D~i----d~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~----  115 (303)
T PRK06436         45 VPGKKTKMIQSLSAGVDHI----DVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS----  115 (303)
T ss_pred             CCCCCeEEEEECCcccCcc----cHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC----
Confidence            3568999999999999965    58899998888777 58889999999999999999999999999999999853    


Q ss_pred             cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+++|.|++|||||+|+||+.+|+++++|||+|++|||+....      +.. ...++++++++||+|++|+|++++|++
T Consensus       116 ~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~  189 (303)
T PRK06436        116 PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GISSIYMEPEDIMKKSDFVLISLPLTDETRG  189 (303)
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------CcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence            3568999999999999999999999999999999999975321      222 145899999999999999999999999


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCC-cCCHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS-GTTIDAQL  268 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia-~~t~e~~~  268 (304)
                      +++++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||++||++.++   .+|||++|||++ ++|.++++
T Consensus       190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~  266 (303)
T PRK06436        190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQ  266 (303)
T ss_pred             CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999998765   579999999986 48899999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCceeecC
Q 021995          269 RYAAGVKDMLDRYFKGEDFPVQNYIVKA  296 (304)
Q Consensus       269 ~~~~~~~~~l~~~~~g~~~~~~n~~~~~  296 (304)
                      ++...+.+||.+|++|++.   |.++.+
T Consensus       267 ~~~~~~~~ni~~~~~g~~~---~~V~~~  291 (303)
T PRK06436        267 PAVALAFENIKNFFEGKPK---NIVRKE  291 (303)
T ss_pred             HHHHHHHHHHHHHHcCCCC---ceEchH
Confidence            9999999999999999874   545443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=2.4e-54  Score=409.31  Aligned_cols=236  Identities=25%  Similarity=0.421  Sum_probs=212.0

Q ss_pred             ccchhchhHHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           20 LRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        20 ~~~~~~~~~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      +++.|++++++..+++||+|+++++|+|++    |+++|.++||.|+|+||+|+.+||||++++||.+.|+.        
T Consensus        43 v~s~t~v~~~ll~~~~Lk~I~~~~~G~D~i----D~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~--------  110 (378)
T PRK15438         43 VRSVTKVNESLLAGKPIKFVGTATAGTDHV----DEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD--------  110 (378)
T ss_pred             EcCCCCCCHHHhcCCCCeEEEECccccccc----CHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------
Confidence            567889999987789999999999999966    48899999999999999999999999999999999852        


Q ss_pred             hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                                  +.+|.|+||||||+|+||+.+|++|++|||+|++||+.....    .... .+.++++++++||+|++
T Consensus       111 ------------g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~l  173 (378)
T PRK15438        111 ------------GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTF  173 (378)
T ss_pred             ------------CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEE
Confidence                        347999999999999999999999999999999999743211    1111 24589999999999999


Q ss_pred             cCCCChh----hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          180 NTPLTEK----TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       180 ~~p~~~~----t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      |+|+|++    |+++++++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.+ +++|+..++ ++
T Consensus       174 h~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~-~~~Ll~~~~-i~  251 (378)
T PRK15438        174 HTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPEL-NVELLKKVD-IG  251 (378)
T ss_pred             eCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCC-chhhhhcCC-EE
Confidence            9999996    99999999999999999999999999999999999999999999999999999964 567877665 99


Q ss_pred             ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      |||+||+|.|.+.++...+.+|+.+|+ |.+.
T Consensus       252 TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~~  282 (378)
T PRK15438        252 TPHIAGYTLEGKARGTTQVFEAYSKFI-GHEQ  282 (378)
T ss_pred             CCccCcCcHHHHHHHHHHHHHHHHHHH-cCcc
Confidence            999999999999999999999999998 5554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=7.8e-54  Score=406.85  Aligned_cols=236  Identities=29%  Similarity=0.463  Sum_probs=214.2

Q ss_pred             ccchhchhHHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           20 LRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        20 ~~~~~~~~~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      +++.+++++++...++||+|++.++|+|++    |+++|.++||.|+|+||+|+.+||||+++++|++.|+         
T Consensus        43 v~~~t~v~~~ll~~~~Lk~I~~~~~G~D~i----D~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------  109 (381)
T PRK00257         43 VRSVTRVDRALLEGSRVRFVGTCTIGTDHL----DLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------  109 (381)
T ss_pred             EeCCCCCCHHHhcCCCCeEEEECCcccccc----CHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------
Confidence            577789999986678999999999999965    5889999999999999999999999999999999984         


Q ss_pred             hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                                 .+++|.|+||||||+|+||+.+|+++++||++|++||+.....    . +...+.++++++++||+|++
T Consensus       110 -----------~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~l  173 (381)
T PRK00257        110 -----------EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISL  173 (381)
T ss_pred             -----------cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEE
Confidence                       1347999999999999999999999999999999999853211    1 21234589999999999999


Q ss_pred             cCCCCh----hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          180 NTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       180 ~~p~~~----~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      |+|+|+    .|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||. .++||+.. |+++
T Consensus       174 h~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~  251 (381)
T PRK00257        174 HTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIA  251 (381)
T ss_pred             eCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEE
Confidence            999998    69999999999999999999999999999999999999999999999999999996 46788885 9999


Q ss_pred             ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCC
Q 021995          256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGED  286 (304)
Q Consensus       256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~  286 (304)
                      |||+||+|.+++.++...+.+|+.+|+.+.+
T Consensus       252 TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~  282 (381)
T PRK00257        252 TPHIAGYSLDGKARGTAQIYQALCRFFGIPA  282 (381)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999998875

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=2.3e-48  Score=335.18  Aligned_cols=178  Identities=39%  Similarity=0.675  Sum_probs=156.1

Q ss_pred             HHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC
Q 021995           81 LMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG  160 (304)
Q Consensus        81 l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g  160 (304)
                      +++||++.|++..+++.++++.|... ....+++|.|+||||||+|+||+.+|+++++|||+|++|||+..+.......+
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~-~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASR-ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHH-TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCC-cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence            58999999999999999999999211 12457899999999999999999999999999999999999775443345556


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC
Q 021995          161 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  240 (304)
Q Consensus       161 ~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep  240 (304)
                      +.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||++||++||++||+++|++|++.||+||||++||
T Consensus        80 ~~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP  158 (178)
T PF02826_consen   80 VEY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEP  158 (178)
T ss_dssp             EEE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSS
T ss_pred             cee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCC
Confidence            644 5999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCeEEccCCC
Q 021995          241 APKDHPWRYMPNQAMTPHVS  260 (304)
Q Consensus       241 ~~~~~~l~~~~nv~lTPHia  260 (304)
                      ++.++|||++||+++|||+|
T Consensus       159 ~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  159 LPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             SSTTHHHHTSTTEEEESS-T
T ss_pred             CCCCChHHcCCCEEEeCccC
Confidence            99999999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.96  E-value=1.3e-28  Score=226.26  Aligned_cols=256  Identities=24%  Similarity=0.338  Sum_probs=218.5

Q ss_pred             HHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccc
Q 021995           28 RHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG  107 (304)
Q Consensus        28 ~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~  107 (304)
                      +.+++.+.||++...+.|+|    ++|+.+|.+-||.|||.|+...+.+|+-++..+|.+.|+.....+..++|.|....
T Consensus        88 eDlEkfkalRv~~rig~g~d----n~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~  163 (435)
T KOG0067|consen   88 EDLEKFKALRVIVRIGSGYD----NIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGL  163 (435)
T ss_pred             hhHHHhhhhceeeeeccccc----hhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeech
Confidence            34677788999999988887    67799999999999999999999999999999999999998888889999886421


Q ss_pred             -----ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          108 -----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       108 -----~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                           .......+.|.+.|++|+|+.|+.++.++++||..|+.||+.. .....+.+|...+.++.+++.++|.+++||.
T Consensus       164 ~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~  242 (435)
T KOG0067|consen  164 EQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDKSLGLQRVYTLQDLLYQSDCVSLHCN  242 (435)
T ss_pred             hhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhhhcccceecccchhhhhccceeeecc
Confidence                 1123346789999999999999999999999999999999843 3445566777777789999999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCCeEEccCCCc
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~nv~lTPHia~  261 (304)
                      +++.++++++.-.+++|++|+.++|++||.++|+++|.++|++|++.+++       |.. ..-||.+.||.+.|||.++
T Consensus       243 ~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~  315 (435)
T KOG0067|consen  243 LNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAW  315 (435)
T ss_pred             cCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccch
Confidence            99999999999999999999999999999999999999999999999877       211 2357788899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCC-CCCceeec
Q 021995          262 TTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIVK  295 (304)
Q Consensus       262 ~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~~~  295 (304)
                      ++..+..++...+...+++-+.|.-. ...|-+++
T Consensus       316 ~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk  350 (435)
T KOG0067|consen  316 YSEAASVELREVAALEIRRAITGRIPDSLRNCVNK  350 (435)
T ss_pred             hhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhh
Confidence            99988888888787778877777554 33343433

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.87  E-value=2.3e-21  Score=187.48  Aligned_cols=156  Identities=17%  Similarity=0.185  Sum_probs=131.8

Q ss_pred             CCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995           61 AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN  140 (304)
Q Consensus        61 ~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G  140 (304)
                      .+|+|+|+|+.+..+++|+++++++++...+      ++.+          +..+.|++|+|+|+|.||+.+|++|++||
T Consensus       214 L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~----------~~~LaGKtVgVIG~G~IGr~vA~rL~a~G  277 (476)
T PTZ00075        214 LLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT----------DVMIAGKTVVVCGYGDVGKGCAQALRGFG  277 (476)
T ss_pred             CCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc----------CCCcCCCEEEEECCCHHHHHHHHHHHHCC
Confidence            5799999999999999999999999988432      2222          24799999999999999999999999999


Q ss_pred             CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995          141 CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  220 (304)
Q Consensus       141 ~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~  220 (304)
                      ++|+++++++.....+...|+... +++++++++|+|++|+.    +.++|+.+.|+.||+|++|||+||+   |++.+.
T Consensus       278 a~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i  349 (476)
T PTZ00075        278 ARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDIITLEHMRRMKNNAIVGNIGHF---DNEIQV  349 (476)
T ss_pred             CEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----cccccCHHHHhccCCCcEEEEcCCC---chHHhH
Confidence            999999887654444455676654 79999999999999863    6789999999999999999999999   688888


Q ss_pred             HHHHcCCceEEEeecCCCCCCCCC
Q 021995          221 DACSSGHIAGYSGDVWNPQPAPKD  244 (304)
Q Consensus       221 ~aL~~g~i~ga~lDV~~~ep~~~~  244 (304)
                      ++|+++.    ++|+++.+|....
T Consensus       350 ~aL~~~~----~vdv~evep~v~~  369 (476)
T PTZ00075        350 AELEAYP----GIEIVEIKPQVDR  369 (476)
T ss_pred             HHHHhcC----CceeecccCCCCe
Confidence            8888754    6899999987543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.80  E-value=2.6e-19  Score=165.27  Aligned_cols=157  Identities=22%  Similarity=0.312  Sum_probs=126.7

Q ss_pred             cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHH-HHHhCCcEEE------EcCCCChhHHHHHHHHHHHHHHhCcc
Q 021995           21 RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFL-AAAAAGLTVA------EVTGSNVVSVAEDELMRILILVRNFL   92 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~-~~~~~gI~v~------n~~g~~~~~vAE~al~~~L~~~R~~~   92 (304)
                      .....+++++ +++|   .+++.++|++    ++|++ +|+++||+|+      |++.+|+.++||+++++++...    
T Consensus        77 ~~~~~l~~~~l~~~~---~~~~~~~G~~----~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~----  145 (287)
T TIGR02853        77 NEKVVLTPELLESTK---GHCTIYVGIS----NPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT----  145 (287)
T ss_pred             cCCccccHHHHHhcC---CCCEEEEecC----CHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc----
Confidence            3444566665 6666   3677788987    55677 9999999999      9999999999999998877431    


Q ss_pred             hhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhh
Q 021995           93 PGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTM  170 (304)
Q Consensus        93 ~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~l~el  170 (304)
                                         +.+++|++++|+|+|.||+.+|+.|+++|++|++++|++.....+.+.+...  .++++++
T Consensus       146 -------------------~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~  206 (287)
T TIGR02853       146 -------------------DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEK  206 (287)
T ss_pred             -------------------CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHH
Confidence                               2368999999999999999999999999999999999765444444445443  2467788


Q ss_pred             cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       171 l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ++++|+|++|+|..     +++++.++.|++++++||++..+
T Consensus       207 l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       207 VAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             hccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            99999999999864     67788999999999999999744

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02494 adenosylhomocysteinase

Probab=99.66  E-value=2.8e-16  Score=152.05  Aligned_cols=120  Identities=18%  Similarity=0.237  Sum_probs=105.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+.|++|+|+|+|.||+.+|+++++||++|+++++++.....+...|.... +++++++.+|+|+.+..    +.++++.
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----CccchHH
Confidence            478999999999999999999999999999999987755555666677654 78999999999987443    6788999


Q ss_pred             HHHhcCCCCCEEEEcCC-CchhchHHHHHH--HHcCCceEEEeecCCCC
Q 021995          194 DRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ  239 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~r-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~e  239 (304)
                      +.|+.||+|++|+|+|| +..||+.+|.++  ++.+.+. ..+|+|+.+
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            99999999999999999 689999999998  9999998 899999875

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.61  E-value=2.5e-15  Score=144.08  Aligned_cols=120  Identities=17%  Similarity=0.226  Sum_probs=105.0

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+.|++|+|+|+|.||+.+|+.++++|++|+++++++.....+...|.... +++++++++|+|+.+..    +.++++.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHHH
Confidence            478999999999999999999999999999999987765555666677554 78899999999988764    5678888


Q ss_pred             HHHhcCCCCCEEEEcCCCch-hchHHHHHHHHcCCceEEEeecCCC
Q 021995          194 DRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNP  238 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~-vd~~aL~~aL~~g~i~ga~lDV~~~  238 (304)
                      +.+..||+|++++|+||+++ ||.++|.+++.+....+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999998887777789998873

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.57  E-value=3.6e-15  Score=126.61  Aligned_cols=115  Identities=15%  Similarity=0.277  Sum_probs=95.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc-HHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI  196 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~-~~~l  196 (304)
                      ++|||||+|.||+.+|++|...|++|.+|||++.+.+.+.+.|+...+++.|+++++|+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999987666777777888889999999999999999999888877752 2278


Q ss_pred             hcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      +.+++|.++||++..+.-....+.+.+.+..+.  .+|
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd  117 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVD  117 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eee
Confidence            889999999999999999999999999987766  556

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.57  E-value=4.2e-14  Score=131.27  Aligned_cols=152  Identities=21%  Similarity=0.227  Sum_probs=117.3

Q ss_pred             hhHH-HhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCC------ChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           26 FSRH-YASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGS------NVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        26 ~~~~-l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~------~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      ++++ +..+|++..+. .+.+.++    .+ +.|.++||++.+....      |+.++||.++.+.+..   .       
T Consensus        83 ~~~~~l~~l~~~~~v~-~G~~~~~----~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~---~-------  146 (296)
T PRK08306         83 LTEELLELTPEHCTIF-SGIANPY----LK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEH---T-------  146 (296)
T ss_pred             chHHHHHhcCCCCEEE-EecCCHH----HH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHh---C-------
Confidence            3444 57788886443 2344443    33 5789999999988764      8889999977754421   1       


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec--CCHHhhcCcCCE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDI  176 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~l~ell~~aDv  176 (304)
                                   +.++.|++++|+|+|.+|+.+++.|+.+|++|++++|++...+.+...|....  +++.+.++++|+
T Consensus       147 -------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDi  213 (296)
T PRK08306        147 -------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDI  213 (296)
T ss_pred             -------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCE
Confidence                         23578999999999999999999999999999999998755555666776543  467788999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      |+.++|.     .+++++.++.|++++++||++..
T Consensus       214 VI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        214 IFNTIPA-----LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             EEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence            9999983     46788999999999999999853

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.56  E-value=9.2e-15  Score=135.33  Aligned_cols=94  Identities=18%  Similarity=0.290  Sum_probs=82.0

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ..|+|++|||||+|+||+.+|++|+++|++|+++++...+.+.+...|.... ++++++++||+|++|+|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            3689999999999999999999999999999999875544455566677654 899999999999999997 67789999


Q ss_pred             HHHHhcCCCCCEEEEc
Q 021995          193 KDRIAKMKKGVLIVNN  208 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~  208 (304)
                      ++.++.||+|++|+-.
T Consensus        90 ~eil~~MK~GaiL~f~  105 (335)
T PRK13403         90 AEVEENLREGQMLLFS  105 (335)
T ss_pred             HHHHhcCCCCCEEEEC
Confidence            9999999999988754

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.55  E-value=2.2e-14  Score=131.45  Aligned_cols=115  Identities=14%  Similarity=0.204  Sum_probs=105.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD  194 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~  194 (304)
                      .+||+||+|.||..+|++|...|++|.+|||++.+ .+.....|.....+..|+.+++|+|++|+|..++.+.++-  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            48999999999999999999999999999999876 6666677998888999999999999999999999888874  57


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      .++.+|+|.++||++..+......+.+.+++..+.  .+|
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD  118 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD  118 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence            89999999999999999999999999999999987  556

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.46  E-value=2.6e-13  Score=111.25  Aligned_cols=59  Identities=22%  Similarity=0.303  Sum_probs=48.8

Q ss_pred             ccccchhc-hhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHH
Q 021995           18 GFLRSSSR-FSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDE   80 (304)
Q Consensus        18 ~~~~~~~~-~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~a   80 (304)
                      +++....+ +++++ +.+|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||+
T Consensus        41 ~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   41 AIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN----IDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             EEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT----B-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHhccceeEEEEEcccccCc----ccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            45445544 88886 778999999999999985    5699999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.43  E-value=5.5e-13  Score=123.26  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=95.9

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc-c-HHHH
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI  196 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i-~-~~~l  196 (304)
                      +|||||+|.||+.+|+.|...|++|++|||++.+.+.+.+.|.....+.++++++||+|++|+|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            4899999999999999999999999999998766666666777666788899999999999999887777664 2 3467


Q ss_pred             hcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.++++.++||+++..+.+..++.+.+++..+.
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            788999999999999999999999999987665

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.42  E-value=6.7e-13  Score=122.88  Aligned_cols=112  Identities=19%  Similarity=0.272  Sum_probs=96.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~  195 (304)
                      ++|||||+|.||+.+|+.+...|++|.+||+++...+...+.|.....++++++++||+|++|+|.+..++.++.  .+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999987655555666777677899999999999999998887777653  346


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++.+++|.++||+++..+...+++.+.+.+..+.
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~  116 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE  116 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            7889999999999999998999999999887665

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.42  E-value=9.6e-13  Score=127.05  Aligned_cols=141  Identities=18%  Similarity=0.193  Sum_probs=106.1

Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC
Q 021995           60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF  139 (304)
Q Consensus        60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~  139 (304)
                      +.+++|.|++..+..+.-|...+.-               ++.|..-. ......+.|++|+|+|+|.||+.+|+.|+++
T Consensus       171 ~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai~-rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~  234 (425)
T PRK05476        171 ALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGIK-RATNVLIAGKVVVVAGYGDVGKGCAQRLRGL  234 (425)
T ss_pred             CCCCCEEecCCcccCccccccHHHH---------------hhhHHHHH-HhccCCCCCCEEEEECCCHHHHHHHHHHHhC
Confidence            4679999999988776444222221               12221000 0012357999999999999999999999999


Q ss_pred             CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch-hchHH
Q 021995          140 NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQA  218 (304)
Q Consensus       140 G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~-vd~~a  218 (304)
                      |++|+++|+++.....+...|... .+++++++.+|+|+.++.    +.++++.+.+..||+|++++|+|+... +|.++
T Consensus       235 Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~  309 (425)
T PRK05476        235 GARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEIDVAA  309 (425)
T ss_pred             CCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccChHH
Confidence            999999999876555555667664 478999999999988764    456888999999999999999999876 67777


Q ss_pred             HHH
Q 021995          219 VVD  221 (304)
Q Consensus       219 L~~  221 (304)
                      |.+
T Consensus       310 L~~  312 (425)
T PRK05476        310 LEE  312 (425)
T ss_pred             Hhh
Confidence            654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.41  E-value=9.8e-13  Score=122.25  Aligned_cols=113  Identities=19%  Similarity=0.266  Sum_probs=98.4

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhccccHHH
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~---aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      +|||||+|.||+.+|+.|...|++|++|||++...+.+.+.|.....++++++++   +|+|++|+|..+.++.++ .+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i   80 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL   80 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence            7999999999999999999999999999998765566666787777889998876   699999999887877777 467


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      ++.+++|.++||+++....+..++.+.+.+..+.  .+|
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            7889999999999999999999999999887765  466

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.41  E-value=1.1e-12  Score=121.88  Aligned_cols=115  Identities=12%  Similarity=0.158  Sum_probs=99.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~  195 (304)
                      ++|||||+|.||..+|+.|...|++|++||+++.+.+.+.+.|.....++.+++++||+|++|+|....++.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            479999999999999999999999999999987666666666777777889999999999999998876666653  346


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      +..+++|.++||++++.+...+.+.+.+.+..+.  .+|
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld  118 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD  118 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            7788999999999999999999999999998877  456

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.38  E-value=1.3e-12  Score=109.95  Aligned_cols=102  Identities=22%  Similarity=0.369  Sum_probs=75.9

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|++++.+|...-++...|.+.. +++++++++|+++.++.    ...++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence            3689999999999999999999999999999999998866666777788765 89999999999988875    346888


Q ss_pred             HHHHhcCCCCCEEEEcCCCch-hchHHH
Q 021995          193 KDRIAKMKKGVLIVNNARGAI-MDTQAV  219 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~-vd~~aL  219 (304)
                      .+.|.+||+|+++.|++.-+. +|-+.|
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L  121 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDAL  121 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHH
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccc
Confidence            999999999999999986553 344443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.36  E-value=5.6e-12  Score=124.07  Aligned_cols=121  Identities=12%  Similarity=0.079  Sum_probs=101.5

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----Cce---ecCCHHhhcCc---CCEEEEcCCCChhhh
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKTR  188 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~---~~~~l~ell~~---aDvVi~~~p~~~~t~  188 (304)
                      +||+||+|.||+.+|++|...|++|.+|||++.+.+.+.+.    |..   ...+++++.+.   +|+|++++|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            69999999999999999999999999999987655544332    433   45688888875   999999999999988


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  240 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep  240 (304)
                      .++ ...++.+++|.++||++....-+...+.+.+++..+.....-|.-.++
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            888 578899999999999999999999999999999988855444554443

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.35  E-value=3.9e-12  Score=118.28  Aligned_cols=114  Identities=19%  Similarity=0.238  Sum_probs=98.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhccccHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~---aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      ++|||||+|.||+.+|+.|...|++|.+||+++...+.+.+.|+....+++++++.   +|+|++++|..+.+..++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            37999999999999999999999999999998766666666788777789888876   699999999876777776 46


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      .++.+++|.++||++++.......+.+.+++..+.  .+|
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d  117 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD  117 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence            77889999999999999999999999999998877  456

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.27  E-value=2.8e-11  Score=112.22  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=95.9

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHHH
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRI  196 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~l  196 (304)
                      +|||||+|.||..+++.|...|++|.+||+++. .+...+.|.....+..++.++||+|++|+|..+..+.++.  ...+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            799999999999999999999999999998764 4445566777777899999999999999998877776652  2367


Q ss_pred             hcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      +.+++|.++||++..+.-....+.+.+.+..+.  .+|
T Consensus        81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            778999999999999999999999999887765  566

>PLN02256 arogenate dehydrogenase

Probab=99.25  E-value=1.9e-10  Score=107.11  Aligned_cols=109  Identities=18%  Similarity=0.297  Sum_probs=85.5

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhccccH
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      -.+++|+|||+|.||+.+++.|+.+|++|++|+++. ..+.+...|+....++++++ .++|+|++|+|.. .+..++.+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~  111 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS  111 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh
Confidence            367899999999999999999999999999999875 33455567776667888876 4799999999954 45555533


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      -....++++++++|++..+-+..+++.+.+..
T Consensus       112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            22566899999999999776666677776654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.24  E-value=3.5e-11  Score=115.96  Aligned_cols=104  Identities=17%  Similarity=0.291  Sum_probs=89.2

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ..+.|++|+|+|+|.||+.+++.++++|++|+++|+++...+.+...|+... ++++.+..+|+|+.+..    +.++++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHHH
Confidence            3478999999999999999999999999999999998877788888888654 67888999999998764    346777


Q ss_pred             HHHHhcCCCCCEEEEcCCCch-hchHHHHH
Q 021995          193 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD  221 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~  221 (304)
                      ...+..||+|++++|+|++++ +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 67777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.24  E-value=2.4e-11  Score=110.46  Aligned_cols=118  Identities=16%  Similarity=0.210  Sum_probs=104.2

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--c
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--D  192 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~  192 (304)
                      .+.++||+||+|.||..++..|...|++|++|||+..+.+.+.+.|.+..+++.|+.+.||+|+.++|...+.+.++  .
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            46789999999999999999999999999999999888888888999988999999999999999999988877776  3


Q ss_pred             HHHHhcCCCCCEE-EEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          193 KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       193 ~~~l~~mk~g~il-Vn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      ...|+.+++|... |+.+.-+..-...|.+++......  .+|
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD  153 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD  153 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence            3577778888777 999999998899999999988766  455

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.22  E-value=6e-11  Score=116.49  Aligned_cols=119  Identities=14%  Similarity=0.181  Sum_probs=98.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----C--ceecCCHHhhcC---cCCEEEEcCCCChhhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~l~ell~---~aDvVi~~~p~~~~t~  188 (304)
                      .+|||||+|.||..+|+.|...|++|.+|||++...+...+.    |  +....+++++++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            379999999999999999999999999999987654444332    4  335678988886   5899999999988888


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                      .++ .++++.+++|.++||++.+...|...+.+.+.+..+.....-|.-
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSG  129 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSG  129 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCC
Confidence            888 578888999999999999999999999999999988843333333

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.22  E-value=6e-11  Score=110.27  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=94.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh---cCcCCEEEEcCCCChhhhccccHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~el---l~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      ++|||||+|.||..+|+.|...|++|.+|||++.+.+...+.+.....+++++   +.++|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            37999999999999999999999999999998766666666666555566554   46789999999977 677776 56


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeec
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  235 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV  235 (304)
                      ..+.+++|.++||++.+...+...+.+.+.+..+.  .+|.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            77889999999999999999999999999887776  4553

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02712 arogenate dehydrogenase

Probab=99.21  E-value=5e-11  Score=121.67  Aligned_cols=114  Identities=14%  Similarity=0.223  Sum_probs=90.2

Q ss_pred             cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~  189 (304)
                      .++++.+++|||||+|.||+.+|+.|+.+|++|++||++.. .+.+.+.|+....++++++. .+|+|++|+|. ..+..
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~  440 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEK  440 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHH
Confidence            35677889999999999999999999999999999999753 24455677776778888775 59999999994 56677


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ++.+-....||+|++++|++.++-...+.+.+.+..+
T Consensus       441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~  477 (667)
T PLN02712        441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD  477 (667)
T ss_pred             HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence            7755444478999999999999865566666655543

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.20  E-value=4.5e-11  Score=112.02  Aligned_cols=96  Identities=16%  Similarity=0.240  Sum_probs=78.8

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      ..|.|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            46899999999999999999999999999998887654 33445556677655 899999999999999997655 6666


Q ss_pred             cHHHHhcCCCCCEEEEcCCC
Q 021995          192 DKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +++.++.|++|++| -.+.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            67888999999988 45555

>PLN02858 fructose-bisphosphate aldolase

Probab=99.20  E-value=6.7e-11  Score=128.84  Aligned_cols=120  Identities=14%  Similarity=0.086  Sum_probs=104.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--cH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK  193 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~~  193 (304)
                      ++++||+||+|.||..+|++|...|++|.+|||++.+.+.+.+.|+...+++.++.++||+|++|+|..+..+.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            4568999999999999999999999999999998877777777888888899999999999999999998888876  35


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeec
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  235 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV  235 (304)
                      ..++.+++|.++||++...+-....+.+.+.+..-....+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            678889999999999999999999999999887722235663

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.17  E-value=8.4e-11  Score=108.66  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=94.0

Q ss_pred             EEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHHHhcC
Q 021995          122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM  199 (304)
Q Consensus       122 IIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~l~~m  199 (304)
                      |||+|.||..+|+.|...|++|.+|||++...+...+.|.....++.++++++|+|++|+|..+.++.++.  .+.++.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999987666666667777777899999999999999998777666652  4667788


Q ss_pred             CCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          200 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       200 k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      ++|.++||++..++-....+.+.+.+..+.  .+|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999988888888888888876665  466

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.16  E-value=2.8e-10  Score=111.75  Aligned_cols=111  Identities=10%  Similarity=0.119  Sum_probs=93.0

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhc---CcCCEEEEcCCCChhhhcc
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~l~ell---~~aDvVi~~~p~~~~t~~~  190 (304)
                      .|||||+|.||..+|+.|...|++|.+|||++.+.+...+.     ++....+++++.   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            38999999999999999999999999999987655554443     244556777765   4699999999988888887


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  230 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g  230 (304)
                      + .++++.+++|.++||++....-|...+.+.+.+..+..
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~f  119 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF  119 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEE
Confidence            7 56778899999999999999999999999999888873

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.13  E-value=1.7e-10  Score=125.65  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=100.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--cHH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKD  194 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~~~  194 (304)
                      .++|||||+|.||..+|+.|...|++|.+||+++...+.....|.....++.+++++||+|++|+|..++++.++  +..
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            478999999999999999999999999999998765555666677667789999999999999999888888886  446


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHHHHHHc--CCceEEEee
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGD  234 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~--g~i~ga~lD  234 (304)
                      .++.+++|.++||++..++-....+.+.+.+  ..+.  .+|
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD  443 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD  443 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence            7888999999999999999999999999988  5554  555

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.10  E-value=1.4e-09  Score=106.30  Aligned_cols=134  Identities=19%  Similarity=0.290  Sum_probs=98.3

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      ++|+||| +|.||+.+|+.|+..|++|.+|++++... +.+.+.|+....++++.+.++|+|++|+|.. .+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence            4799998 89999999999999999999999876442 4455667766668888999999999999964 344444 566


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCCeEEccCC
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV  259 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~nv~lTPHi  259 (304)
                      .+.+++++++++++.......+++.+.+..+ ..  .+..   .|.. +..+++....++++|+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence            6778999999999987666666666665432 11  2222   2331 22356677789999965

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.09  E-value=1.5e-09  Score=101.25  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=94.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~--~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      ..++|+|||+|.||..+++.|+..|.  +|++||+++...+.+.+.|.  ....++++.++++|+|++|+|... +..++
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~   83 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA   83 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH
Confidence            34689999999999999999998884  89999997655555555554  234577888999999999999642 22332


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC---CC---CCCCCCCccCCCCeEEccCCCcCCHH
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN---PQ---PAPKDHPWRYMPNQAMTPHVSGTTID  265 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~---~e---p~~~~~~l~~~~nv~lTPHia~~t~e  265 (304)
                       ++....++++.++++++..+.--.+++.+.+.. .+.  ++...+   .|   |.....+++...++++||+-++ +.+
T Consensus        84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~  158 (307)
T PRK07502         84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPA  158 (307)
T ss_pred             -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHH
Confidence             455677899999999977553333333333322 222  222211   11   1112235666677899996544 344


Q ss_pred             HH
Q 021995          266 AQ  267 (304)
Q Consensus       266 ~~  267 (304)
                      ..
T Consensus       159 ~~  160 (307)
T PRK07502        159 AV  160 (307)
T ss_pred             HH
Confidence            33

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=99.03  E-value=3.1e-10  Score=109.25  Aligned_cols=107  Identities=22%  Similarity=0.274  Sum_probs=82.3

Q ss_pred             CcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC------CCChhHHHhcCceecCCHHhhcCcCC
Q 021995          102 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD  175 (304)
Q Consensus       102 ~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~------~~~~~~~~~~g~~~~~~l~ell~~aD  175 (304)
                      -|.+..++.....|+||+|+|||+|++|+..|..|+..|++|++--|.      ..+.+.+.+.|... .+++|++++||
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD   99 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD   99 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence            376665544446799999999999999999999999999998844332      23334444556654 58999999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +|++.+|++.  .+.+.++.++.||+|+.|. .|.|-
T Consensus       100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225        100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             EEEEcCChHH--HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence            9999999883  6777799999999999875 34443

>PLN02712 arogenate dehydrogenase

Probab=99.01  E-value=3.5e-09  Score=108.30  Aligned_cols=110  Identities=16%  Similarity=0.276  Sum_probs=82.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .-..++|||||+|.||+.+|+.|+.+|++|++||++. ....+.+.|+....++++++ .++|+|++|+|. ..+..++.
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~  126 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLK  126 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHH
Confidence            3455789999999999999999999999999999874 34456677877777888865 569999999995 45666665


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      .-.+..++++++|+|++.-+..-.+++.+.+..
T Consensus       127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence            433467899999999986553333444444433

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.01  E-value=2.2e-09  Score=98.81  Aligned_cols=94  Identities=18%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      ++|+|||+|.||..+|+.|+..|++|.+||+++...+.+.+.|.. ...+..+.++++|+|++|+|.... ..++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~-~~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLL-LPPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHH-HHHH-HHHH
Confidence            379999999999999999999999999999976555555555542 222223568899999999995432 2333 5666


Q ss_pred             hcCCCCCEEEEcCCCch
Q 021995          197 AKMKKGVLIVNNARGAI  213 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~  213 (304)
                      +.++++++++|++.-+.
T Consensus        79 ~~l~~~~ii~d~~Svk~   95 (279)
T PRK07417         79 PALPPEAIVTDVGSVKA   95 (279)
T ss_pred             HhCCCCcEEEeCcchHH
Confidence            77899999999987553

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.01  E-value=5.1e-10  Score=93.96  Aligned_cols=95  Identities=22%  Similarity=0.327  Sum_probs=69.7

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      |++|+|+|||+|+.|++.|..|+..|++|++-.|... +.+.+++.|.+.. +.+|+.+++|+|++.+|... ...+..+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~-q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEV-QPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence            6899999999999999999999999999998887665 5667778888765 89999999999999999532 2345567


Q ss_pred             HHHhcCCCCCEEEEcCCCc
Q 021995          194 DRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.||+|..|+- +.|-
T Consensus        80 ~I~p~l~~G~~L~f-ahGf   97 (165)
T PF07991_consen   80 EIAPNLKPGATLVF-AHGF   97 (165)
T ss_dssp             HHHHHS-TT-EEEE-SSSH
T ss_pred             HHHhhCCCCCEEEe-CCcc
Confidence            88889999998763 3443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.98  E-value=3.1e-09  Score=93.97  Aligned_cols=118  Identities=21%  Similarity=0.254  Sum_probs=104.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh---cCcCCEEEEcCCCChhhhccccHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~el---l~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      +++|+||+|+||..++++|...|++|++||+++...+.+...|+....+++++   +...-+|.+.+|..+.|..++ .+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            47899999999999999999999999999999887788888888777788776   455789999999988887776 57


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCC
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  238 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (304)
                      +-+.|.+|-++|+-+...--|....++.|.+..|.  .+||=..
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS  121 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS  121 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence            78889999999999999999999999999999998  7888554

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.98  E-value=2e-09  Score=100.66  Aligned_cols=97  Identities=21%  Similarity=0.323  Sum_probs=73.9

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      |+|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+.+.|+... +..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            578999999999999999999999999987655433 33344446677654 688899999999999995533 334456


Q ss_pred             HHHhcCCCCCEEEEcCCCchh
Q 021995          194 DRIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~v  214 (304)
                      +..+.++++. +|.++-|-.+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6778888886 7788777544

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.97  E-value=5.7e-10  Score=85.86  Aligned_cols=90  Identities=20%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             EEEEEeeChhhHHHHHHhccCC---CeEE-EEcCCCCChhH-HHhcCceecC-CHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFN---CNLL-YHDRVKMDPQL-EKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G---~~V~-~~dr~~~~~~~-~~~~g~~~~~-~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ||||||+|+||+++++.|...|   .+|. +++|++++... .+++++.... +..++++++|+|++|+|... ... +.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~-~~~-v~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ-LPE-VL   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG-HHH-HH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH-HHH-HH
Confidence            6999999999999999999999   8998 55887654433 4556665554 78999999999999999432 222 22


Q ss_pred             HHHHhcCCCCCEEEEcCCC
Q 021995          193 KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg  211 (304)
                      ++. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            334 566789999998654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.96  E-value=5.8e-09  Score=95.04  Aligned_cols=103  Identities=14%  Similarity=0.245  Sum_probs=80.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC----eEEEE-cCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ++|||||+|+||..+++.|...|+    +|++| +|++...+.+.+.|+....+..+++++||+|++|+| .+....++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            479999999999999999998887    88888 887765556666788777788899999999999997 44455555 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      .+..+.++++.++|++..|  +..+.+.+.+.
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            3555667889999988765  35566665553

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.95  E-value=8.8e-09  Score=94.53  Aligned_cols=100  Identities=16%  Similarity=0.285  Sum_probs=71.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      ++|+|||+|.||+.+++.|+..|+  +|++||+++...+.+.+.|.. ...+++++. ++|+|++|+|.... ..++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~-~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAI-IEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHH-HHHH-HH
Confidence            379999999999999999987775  799999976555555566652 344677765 59999999996543 3333 45


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      ..+ +++++++++++.-    ...+.+.+..
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            556 8899999998653    3334444443

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.95  E-value=1.1e-08  Score=94.19  Aligned_cols=137  Identities=19%  Similarity=0.170  Sum_probs=94.9

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC--CCChhHHHhcCcee--cCCH-HhhcCcCCEEEEcCCCChhhhccc
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKF--EEDL-DTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~--~~~~~~~~~~g~~~--~~~l-~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      .++|+|+|+|.||+.+|+.++..|+.|.+++++  ....+.+.++|+..  ..+. .+...++|+|++++|-. .|..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence            468999999999999999999999987555544  33334444456532  1233 67788899999999954 344444


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC---CCCCccCCCCeEEccCCCc
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~---~~~~l~~~~nv~lTPHia~  261 (304)
                       +++...+|+|++++|++.-+.--.+++.+.+.+.. .     +....|.-   ...+++....+++||.-..
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~~  147 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEGT  147 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCCC
Confidence             55666899999999999877666666666664432 2     12234543   2457777778999996544

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.94  E-value=9.6e-09  Score=95.19  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=76.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-----------HHhc------------C-ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-----------~~~~------------g-~~~~~~l~ell~~  173 (304)
                      ++|||||+|.||..+|+.+...|++|++||+++...+.           ..+.            + ....++. +.+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            58999999999999999999999999999997643321           1111            1 1233344 56899


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHH
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACS  224 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~  224 (304)
                      ||+|+.|+|..++.+..+-.+..+.++++++|+ |+|.-+   ...+.+.+.
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            999999999988888877777777899999887 676654   334555554

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.93  E-value=1.4e-08  Score=89.05  Aligned_cols=110  Identities=22%  Similarity=0.258  Sum_probs=85.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceecCCHHhhcC-cCCEEEEcCCCChhhhc
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~  189 (304)
                      +.+++|++++|+|+|+||+.+|+.|..+|++|+++|+++...+... .++.... +.++++. +||+++.|..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cc
Confidence            3468999999999999999999999999999999998764333332 3366555 3455664 7999987765     35


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +++++.++.|+ ..+++..+.+++-| ..-.+.|++..+.
T Consensus        97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            88899999997 46788888888766 5667778887776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.89  E-value=6.9e-09  Score=96.55  Aligned_cols=111  Identities=20%  Similarity=0.336  Sum_probs=92.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      -+.||++.|.|||..|+.+|.+|+++|++|++....|...-++.-.|.+.. .+++....+|+++.++-    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence            368999999999999999999999999999999988876667777787765 79999999999998876    5689999


Q ss_pred             HHHhcCCCCCEEEEcCCCch-hchHHHHH-HHHcCCce
Q 021995          194 DRIAKMKKGVLIVNNARGAI-MDTQAVVD-ACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~-vd~~aL~~-aL~~g~i~  229 (304)
                      +.|..||+|+++-|+|.-.+ ||...|.+ ++....++
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence            99999999999999997666 45555543 23434444

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.88  E-value=2.7e-08  Score=94.88  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=90.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce----ecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++|+|||+|.||.++|+.|+..|++|.+|++++.........+..    ...++++++++||+|++|+|.. .+..++ +
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence            479999999999999999999999988888876544433333221    2356788899999999999964 445554 3


Q ss_pred             HHHh-cCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCC---------CCCccCCCCeEEccCCCc
Q 021995          194 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK---------DHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       194 ~~l~-~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~---------~~~l~~~~nv~lTPHia~  261 (304)
                      +... .+++++++.|++.-+.-..+++.+.+. ....  +++.   .|.+-         ...++.....++||+-..
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~  150 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDHT  150 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence            4444 478999999999876544444444322 1222  2332   24321         234566667889996643

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.88  E-value=2e-08  Score=94.15  Aligned_cols=105  Identities=12%  Similarity=0.177  Sum_probs=81.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------c---------CceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T---------GAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~---------g~~~~~~l~ell~~aDvV  177 (304)
                      ++|||||.|.||..+|..+...|++|.+||+++...+....           .         .+....++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            58999999999999999999999999999997643222111           1         124556888999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +-++|.+.+.+..+-++.-+.++++++ |.++.. .+...++.+.++
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS-~l~~s~la~~~~  132 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAI-IASSTS-GLLPTDFYARAT  132 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCC-ccCHHHHHHhcC
Confidence            999999998888887888888999984 444444 456677777664

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.87  E-value=1.9e-08  Score=97.99  Aligned_cols=135  Identities=11%  Similarity=0.088  Sum_probs=91.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce----------------ecCCHHhhcCcCCEEEEcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----------------~~~~l~ell~~aDvVi~~~  181 (304)
                      ++|||||+|.||..+|..|.. |++|++||+++.+.+... .|..                ..++..+.+++||++++|+
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            689999999999999999877 799999999875554444 2221                1223335689999999999


Q ss_pred             CCCh------hhhccc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC--Cce-E-EEeecCCCCCCCCC---CC
Q 021995          182 PLTE------KTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIA-G-YSGDVWNPQPAPKD---HP  246 (304)
Q Consensus       182 p~~~------~t~~~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g--~i~-g-a~lDV~~~ep~~~~---~~  246 (304)
                      |...      +...+.  .+...+.+++|.++|+.|.-++-..+.++..+...  ++. + ...=+|.+||....   +.
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~  164 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR  164 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence            9652      333443  34567889999999999998888888765543332  222 1 11114667887644   33


Q ss_pred             ccCCCCeE
Q 021995          247 WRYMPNQA  254 (304)
Q Consensus       247 l~~~~nv~  254 (304)
                      +..+|.++
T Consensus       165 ~~~~~riv  172 (425)
T PRK15182        165 LTNIKKIT  172 (425)
T ss_pred             ccCCCeEE
Confidence            45556563

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.86  E-value=5e-08  Score=90.15  Aligned_cols=140  Identities=13%  Similarity=0.098  Sum_probs=92.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------------------------cCceecCCHHhhcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP  172 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------------~g~~~~~~l~ell~  172 (304)
                      ++|+|||.|.||..+|..+...|++|+.||+++...+...+                         .++....++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            58999999999999999999889999999987643222211                         12234568888899


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  252 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~n  252 (304)
                      .||+|+.++|...+.+..+-++..+.++++++|+..+.+-  ....+.+.+... -+..++-  .      ..|.+..+.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~-~r~vg~H--f------~~p~~~~~l  152 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRP-EKFLALH--F------ANEIWKNNT  152 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCc-ccEEEEc--C------CCCCCcCCe
Confidence            9999999999765555554456667788899885443332  344566655432 2223332  1      224456677


Q ss_pred             eEEccCCCcCCHHHHHH
Q 021995          253 QAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       253 v~lTPHia~~t~e~~~~  269 (304)
                      +.++|+-.. +.+..+.
T Consensus       153 vevv~~~~t-~~~~~~~  168 (287)
T PRK08293        153 AEIMGHPGT-DPEVFDT  168 (287)
T ss_pred             EEEeCCCCC-CHHHHHH
Confidence            888886654 3444443

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.85  E-value=5.3e-08  Score=90.09  Aligned_cols=103  Identities=19%  Similarity=0.288  Sum_probs=75.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...+           .|             +....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            58999999999999999999999999999997643322111           12             23445665 4789


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHH
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACS  224 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~  224 (304)
                      ||+|+.++|...+.+..+-++..+.++++++|+ |++.-++   .++.+.+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~  132 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATD  132 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC
Confidence            999999999876655554466777889999998 6655443   35666653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.84  E-value=7.5e-09  Score=95.64  Aligned_cols=115  Identities=11%  Similarity=0.098  Sum_probs=82.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------c-----------------CceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------~-----------------g~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..|...|++|++||+++...+...+       .                 ++....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            58999999999999999999999999999997644333211       0                 12345678889999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEE-EEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~il-Vn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-++   ..+.+.+.. .-...++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            99999999987766655545666778999877 78877554   445555432 2223344444

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.84  E-value=9.2e-09  Score=96.00  Aligned_cols=83  Identities=19%  Similarity=0.263  Sum_probs=68.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+++|+|||+|.||+.+|+.|...|++|.+|+|+..             .+++++++++|+|++++|. +..+.++ ++.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~-~~l   67 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA-EQV   67 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH-HHH
Confidence            467899999999999999999999999999998642             3678889999999999997 4666665 333


Q ss_pred             Hh-cCCCCCEEEEcCCCch
Q 021995          196 IA-KMKKGVLIVNNARGAI  213 (304)
Q Consensus       196 l~-~mk~g~ilVn~~rg~~  213 (304)
                      .. .++++.++|++++|-.
T Consensus        68 ~~~~~~~~~ivi~~s~gi~   86 (308)
T PRK14619         68 QALNLPPETIIVTATKGLD   86 (308)
T ss_pred             HHhcCCCCcEEEEeCCccc
Confidence            33 4788999999987543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.84  E-value=6.9e-09  Score=95.29  Aligned_cols=103  Identities=16%  Similarity=0.313  Sum_probs=78.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC----eEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~----~V~~~dr~~~~~~~~~-~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ++|||||+|+||.++++.|...|+    +|+++||+..+.+.+. ++|+....+..+++++||+|++|+|. .....++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence            489999999999999999987664    6999999775544444 36776667888899999999999994 4555554 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      ++....++++.++|++.-|-  +.+.|.+.+.
T Consensus        81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence            44555678889999999884  5556666553

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.83  E-value=2.5e-08  Score=95.52  Aligned_cols=151  Identities=15%  Similarity=0.226  Sum_probs=99.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCce---e---cCCHHhhcCcCCEEEEcCCCC-h
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAK---F---EEDLDTMLPKCDIVVVNTPLT-E  185 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~---~---~~~l~ell~~aDvVi~~~p~~-~  185 (304)
                      .+.+.+|.|+|.|.+|+.+++.++.+|++|.++|+++...+... ..+..   .   .+++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            46778899999999999999999999999999998764333332 23321   1   135677889999999998542 2


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCC--eEEccCCCcCC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN--QAMTPHVSGTT  263 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~n--v~lTPHia~~t  263 (304)
                      .+..+++++.++.||+++++||++-..            .|.+.       ...|...+.|.....+  .+.-||+.+.-
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~------------GG~~e-------~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~  304 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQ------------GGCVE-------TSRPTTHDQPTYAVHDVVHYCVANMPGAV  304 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCC------------CCCcc-------CCcCCCCCCCEEEECCeEEEEeCCccccc
Confidence            345678999999999999999997211            11111       1223333455554444  44567777654


Q ss_pred             H-HHHHHHHHHHHHHHHHHHc
Q 021995          264 I-DAQLRYAAGVKDMLDRYFK  283 (304)
Q Consensus       264 ~-e~~~~~~~~~~~~l~~~~~  283 (304)
                      . ++-..+...+...|..+.+
T Consensus       305 p~~aS~~~~~~l~~~l~~~~~  325 (370)
T TIGR00518       305 PKTSTYALTNATMPYVLELAN  325 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            3 3444455555555555554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.82  E-value=1.4e-08  Score=95.47  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=78.4

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------C------ceecCCHHhhcCcCCEEEEcCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g------~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .++|+|||.|.||..+|..|...|++|.+|+|++...+.....        |      +...+++++.++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            3589999999999999999999999999999975433333332        2      3345688888899999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCC-chhc--hHHHHHHHHc
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS  225 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg-~~vd--~~aL~~aL~~  225 (304)
                      ... +     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            652 2     6677889999999999997 3332  4456666654

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.82  E-value=3.3e-09  Score=97.43  Aligned_cols=159  Identities=14%  Similarity=0.114  Sum_probs=119.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceec-CCH------HhhcCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFE-EDL------DTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~-~~l------~ell~~aDvVi~~~p~~~~t  187 (304)
                      .|+++||+|+|.+|+.-.+.+++||++|+++|++. ++.+..+.+|++.+ .+.      +++...-|.++-+++.-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            79999999999999999999999999999999987 44445556887532 222      34566678777666632  2


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHH
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  267 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~  267 (304)
                      .+-+ +..+..||++..+|-++                          .+..|+..+-+.+-+..+.+.-.+-|...|++
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~vg--------------------------~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~  311 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLVG--------------------------LPEKPLKLDTFPLILGRKSIKGSIVGSRKETQ  311 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEEe--------------------------CcCCcccccchhhhcccEEEEeeccccHHHHH
Confidence            2333 57788899999988886                          22235555545556677888888888899999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCceeecCCccCCCCC
Q 021995          268 LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  304 (304)
Q Consensus       268 ~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~~~~  304 (304)
                      +.+......+|+.+++--+++.+|. .++.+.+|+.|
T Consensus       312 E~Ldf~a~~~ik~~IE~v~~~~v~~-a~erm~kgdV~  347 (360)
T KOG0023|consen  312 EALDFVARGLIKSPIELVKLSEVNE-AYERMEKGDVR  347 (360)
T ss_pred             HHHHHHHcCCCcCceEEEehhHHHH-HHHHHHhcCee
Confidence            9999999999999999888877884 44448887764

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.82  E-value=3.9e-08  Score=102.03  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++|+|||+|.||..+++.++..|  .+|++||++..+.+.+.+.|+.  ...++++.++++|+|++|+|.. ....++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  4799999987665666666653  3456788899999999999954 333333 3


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC---------CCCCccCCCCeEEccCCCc
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~---------~~~~l~~~~nv~lTPHia~  261 (304)
                      +..+.++++.++++++.-+....+.+.+.+....+.     +..+-|..         .+..|+.-.+++++|+..+
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            445567889999999986544455566555442222     33344432         2335677778899997654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.80  E-value=2.8e-08  Score=96.55  Aligned_cols=107  Identities=18%  Similarity=0.208  Sum_probs=76.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhh---------------cCcCCEEEEc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTM---------------LPKCDIVVVN  180 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~l~el---------------l~~aDvVi~~  180 (304)
                      ++|+|||+|.||..+|..|...|++|++||+++...+... .|...  ...++++               +++||+|++|
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~-~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN-RGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH-CCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            6899999999999999999999999999999765444322 12110  1123332               3479999999


Q ss_pred             CCCC------hhhhccc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          181 TPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       181 ~p~~------~~t~~~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      +|..      ++...+.  -....+.+++|+++|+.|.-++-..+.+...+.+
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            9964      1112221  2456777899999999999777777777776665

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.79  E-value=7.4e-08  Score=92.39  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=84.8

Q ss_pred             hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995           73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus        73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      .+...+..+-.++..+|...      ++..+.       ......++|+||| +|.||+.+|+.|+..|++|.+||++..
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~-------~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~  133 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSE------NDKGFK-------TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW  133 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHh------HHhccc-------ccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc
Confidence            34445666777777776431      222111       1122558999999 999999999999999999999998431


Q ss_pred             ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHH
Q 021995          152 DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA  222 (304)
Q Consensus       152 ~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a  222 (304)
                                   .+.++++++||+|++|+|... +..++ +++.. +++|+++++++.-+..-..++.+.
T Consensus       134 -------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        134 -------------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             -------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence                         256778899999999999764 34444 34445 899999999987654444455444

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.78  E-value=3.8e-08  Score=82.07  Aligned_cols=111  Identities=17%  Similarity=0.277  Sum_probs=80.3

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhH-HHhcCc----eecCCHHhhcCcCCEEEEcCCCChh-
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK-  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~-~~~~g~----~~~~~l~ell~~aDvVi~~~p~~~~-  186 (304)
                      .+.+++++|+|.|.||+.+++.+...| .+|.+++++....+. .++.+.    ....+++++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            467889999999999999999999885 789999997644333 333332    1345777888999999999997653 


Q ss_pred             hhc-cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          187 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       187 t~~-~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ... .+..   ..++++.+++|++..+.. + .+.+.+++..+.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc
Confidence            112 2232   236899999999876543 3 777777776554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.78  E-value=1.1e-07  Score=88.02  Aligned_cols=89  Identities=13%  Similarity=0.118  Sum_probs=73.4

Q ss_pred             hHHHHHHhccCCCeEEEEcCCCCCh-----hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995          129 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  203 (304)
Q Consensus       129 G~~lA~~l~~~G~~V~~~dr~~~~~-----~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~  203 (304)
                      |+.+|++|...|++|++||+++...     +.+.+.|+...++..++++++|+|++|+|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8899999999999999999875322     34566788888889999999999999999888887877 56889999999


Q ss_pred             EEEEcCCCchhchHH
Q 021995          204 LIVNNARGAIMDTQA  218 (304)
Q Consensus       204 ilVn~~rg~~vd~~a  218 (304)
                      ++||++..+....-.
T Consensus       111 IVID~STIsP~t~~~  125 (341)
T TIGR01724       111 VICNTCTVSPVVLYY  125 (341)
T ss_pred             EEEECCCCCHHHHHH
Confidence            999998665544333

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.78  E-value=1.1e-07  Score=92.34  Aligned_cols=105  Identities=16%  Similarity=0.233  Sum_probs=77.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV  177 (304)
                      ++|+|||+|.||..+|..|...|++|++||+++...+....                   .| .....++.+++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            37999999999999999999999999999997643322211                   23 34556788889999999


Q ss_pred             EEcCCCChh---------hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          178 VVNTPLTEK---------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       178 i~~~p~~~~---------t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      ++|+|....         .... -.+..+.+++|.++|+.|.-++=..+.+.+.+
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~-~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESA-AETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHH-HHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            999996532         1122 24556678999999999876655666675443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.78  E-value=1.3e-07  Score=90.35  Aligned_cols=122  Identities=19%  Similarity=0.272  Sum_probs=83.1

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      +...+|+|||+ |.||+.+|+.|+. +|++|++||+...           ...++++.+++||+|++|+|... +..++ 
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~-~~~~l-   68 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH-TAALI-   68 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH-HHHHH-
Confidence            35679999999 9999999999985 5999999998421           12367788999999999999543 33333 


Q ss_pred             HHHHh---cCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC--CCCCccCCCCeEEccC
Q 021995          193 KDRIA---KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH  258 (304)
Q Consensus       193 ~~~l~---~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~--~~~~l~~~~nv~lTPH  258 (304)
                      ++...   .+++++++.|++.-+.--.+++   + .....     +....|..  ..+.+++..++++||.
T Consensus        69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~-~~~~~-----fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAM---L-ASQAE-----VVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             HHHhhhhcCCCCCeEEEECCCCcHHHHHHH---H-hcCCC-----EEeeCCCCCCCCCcccCCCeEEEeCC
Confidence            33333   3799999999997653222222   2 21111     22334543  2346777778999996

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.78  E-value=2.1e-08  Score=91.46  Aligned_cols=94  Identities=20%  Similarity=0.307  Sum_probs=83.1

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      +.||.+.|.|+|.+|+..|+.|++||++|++....|...-++.-.|.+.. +++|++++.|+++.+..    .+.+|..+
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii~~~  286 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDIITGE  286 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----CcchhhHH
Confidence            56899999999999999999999999999999887776767777788765 89999999999988775    56789999


Q ss_pred             HHhcCCCCCEEEEcCCCch
Q 021995          195 RIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~  213 (304)
                      .|.+||+++++.|++.-.+
T Consensus       287 H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  287 HFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHhCcCCcEEeccccccc
Confidence            9999999999999987653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.77  E-value=7.2e-09  Score=97.11  Aligned_cols=157  Identities=16%  Similarity=0.187  Sum_probs=117.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-C-----CHHhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~-----~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .|++|+|+|+|..|....|.++++|++|+++|++..+.+.++++|+..+ .     ..+++-..+|+++.++| ....  
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~--  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL--  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence            4899999999999999999999999999999999988888999987532 1     12333334999999998 4332  


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCCeEEccCCCcCCHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQL  268 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~nv~lTPHia~~t~e~~~  268 (304)
                         ...++.|+++..++-++-.                         ..+|.+ .....+-+.++.+..+..|.-.|.++
T Consensus       243 ---~~~l~~l~~~G~~v~vG~~-------------------------~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e  294 (339)
T COG1064         243 ---EPSLKALRRGGTLVLVGLP-------------------------GGGPIPLLPAFLLILKEISIVGSLVGTRADLEE  294 (339)
T ss_pred             ---HHHHHHHhcCCEEEEECCC-------------------------CCcccCCCCHHHhhhcCeEEEEEecCCHHHHHH
Confidence               5778889999999888621                         012211 11223445678888888888889999


Q ss_pred             HHHHHHHHHHHHHH-cCCCCCCCceeecCCccCCCCC
Q 021995          269 RYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELAPQYR  304 (304)
Q Consensus       269 ~~~~~~~~~l~~~~-~g~~~~~~n~~~~~~~~~~~~~  304 (304)
                      .+.......|+... +--+++.+|.. ++.++.||.+
T Consensus       295 ~l~f~~~g~Ikp~i~e~~~l~~in~A-~~~m~~g~v~  330 (339)
T COG1064         295 ALDFAAEGKIKPEILETIPLDEINEA-YERMEKGKVR  330 (339)
T ss_pred             HHHHHHhCCceeeEEeeECHHHHHHH-HHHHHcCCee
Confidence            88888888899888 57788778844 4447777753

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.75  E-value=6.3e-08  Score=94.99  Aligned_cols=109  Identities=11%  Similarity=0.073  Sum_probs=92.1

Q ss_pred             hhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhcCc---CCEEEEcCCCChhhhccccHHHHhcC
Q 021995          128 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM  199 (304)
Q Consensus       128 IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~l~ell~~---aDvVi~~~p~~~~t~~~i~~~~l~~m  199 (304)
                      ||+.+|++|...|++|.+|||++.+.+.+.+.     ++....+++++++.   +|+|++++|..+.++.++ .++++.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            79999999999999999999987665555542     46777899998874   899999999999988888 5788999


Q ss_pred             CCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          200 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       200 k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                      .+|.++||++....-|...+.+.+++..+.....-|.-
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSG  117 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSG  117 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCC
Confidence            99999999999999999999999999888843333433

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.74  E-value=4.3e-08  Score=90.03  Aligned_cols=109  Identities=19%  Similarity=0.136  Sum_probs=81.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc--CCCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~--~G~~V~-~~dr~~~~~~-~~~~~g~-~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      ...+|||||+|.||+.+++.+..  .++++. ++|+++...+ .+..++. ..+.+++++++++|+|++|+|....  . 
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~-   81 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--R-   81 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--H-
Confidence            45799999999999999999875  488876 7788654332 3334453 4567899999999999999995432  2 


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                        +-..+.++.|.-++..+.+.+.+.++|.++.++++..
T Consensus        82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence              2223445677777888899888899999988887654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.74  E-value=7.4e-08  Score=89.09  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=75.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~  173 (304)
                      ++|||||.|.||..+|..+...|++|+.||+++...+.           ..+.|             +....++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999998754333           11222             1245677 45799


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcC-CCCCEEEEcCCCchhchHH
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQA  218 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~m-k~g~ilVn~~rg~~vd~~a  218 (304)
                      ||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+..-+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la  130 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA  130 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence            99999999999888877755554555 8899998887665554433

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.73  E-value=3.7e-08  Score=90.62  Aligned_cols=105  Identities=14%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCC-ChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-DPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~-~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+++|||||+|+||..+++.|...|    .+|++++|+.. ..+. ...+|+....+..+++++||+|++++|... ...
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHH
Confidence            4569999999999999999998777    68999998652 2222 234577666788889999999999999543 333


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      .+ .+....++++.++|++.-|-  ..+.+.+.+.
T Consensus        81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~  112 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ  112 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence            33 45555678899999986553  4555665554

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.73  E-value=1.9e-07  Score=87.13  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=86.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..|...|++|++||+++...+..           .+.|             +....++.+.+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999976433321           1223             2455688889999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCe
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  253 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv  253 (304)
                      ||+|+.++|...+....+-.+.-+..+++.++ ..+.. ......+.+.+.... . ...|-+-+ |      ....|=+
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~~~-~-~~~~hp~~-p------~~~~~lv  151 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAGRE-R-CLVAHPIN-P------PYLIPVV  151 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCCcc-c-EEEEecCC-C------cccCceE
Confidence            99999999976554444333332334445544 43333 345666777775433 2 23332221 2      1112336


Q ss_pred             EEccCCCcCCHHHHHH
Q 021995          254 AMTPHVSGTTIDAQLR  269 (304)
Q Consensus       254 ~lTPHia~~t~e~~~~  269 (304)
                      .++|+-.+. .+..++
T Consensus       152 eiv~~~~t~-~~~~~~  166 (308)
T PRK06129        152 EVVPAPWTA-PATLAR  166 (308)
T ss_pred             EEeCCCCCC-HHHHHH
Confidence            688875543 344443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.72  E-value=1.1e-08  Score=84.28  Aligned_cols=96  Identities=27%  Similarity=0.395  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChh-HHHhcC-----ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQ-LEKETG-----AKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~-~~~~~g-----~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      +++|+++.|||.|.+|+.++..|...|++ |++++|+..+.+ .+..++     ....+++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999998 999999864333 233332     22356677788999999999986533


Q ss_pred             hhccccHHHHhcCCCCC-EEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGV-LIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~-ilVn~~rg~  212 (304)
                         .+.++.++..++.. +++|++...
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCC
Confidence               77788887766543 888887543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.72  E-value=9.3e-09  Score=83.71  Aligned_cols=92  Identities=20%  Similarity=0.316  Sum_probs=57.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEE-cCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~-dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .-.+|+|||.|++|..+++.|...|++|..+ +|+..+.+.+.. .+...+.+++++++.+|++++++|++.- .. +-+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI-~~-va~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAI-AE-VAE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHH-HH-HHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHH-HH-HHH
Confidence            4469999999999999999999999998754 676544443332 3434455788999999999999997632 22 223


Q ss_pred             HHHhc--CCCCCEEEEcC
Q 021995          194 DRIAK--MKKGVLIVNNA  209 (304)
Q Consensus       194 ~~l~~--mk~g~ilVn~~  209 (304)
                      ++-..  .++|.+++.+|
T Consensus        87 ~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HHHCC--S-TT-EEEES-
T ss_pred             HHHHhccCCCCcEEEECC
Confidence            44444  68999999996

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.71  E-value=3.1e-08  Score=92.57  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||.|.||..+|..|...|++|.+|+|++...+.....              +.....++++.++++|+|++|+|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            479999999999999999999999999999976444433332              244456788889999999999996


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v  214 (304)
                       ..+..++ .+..+.++++.++|+++.|-..
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             3455554 3556667889999999866443

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.70  E-value=5.5e-08  Score=89.99  Aligned_cols=135  Identities=21%  Similarity=0.222  Sum_probs=93.1

Q ss_pred             cccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.++.||+|+|||.| .||+.+|.+|...|+.|++|++..              .++.++.++||+|+++++..    +
T Consensus       153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~  214 (301)
T PRK14194        153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----R  214 (301)
T ss_pred             hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----h
Confidence            3557899999999996 999999999999999999998743              26889999999999999854    4


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      .+....   +|+|+++||+|-..+.+         +|. ....=||-.++-.        -.--.+||=-+|--.-+...
T Consensus       215 ~v~~~~---ik~GaiVIDvgin~~~~---------~g~-~kl~GDvdf~~~~--------~~a~~iTPVPGGVGp~Tva~  273 (301)
T PRK14194        215 LIDADW---LKPGAVVIDVGINRIDD---------DGR-SRLVGDVDFDSAL--------PVVSAITPVPGGVGPMTIAF  273 (301)
T ss_pred             cccHhh---ccCCcEEEEecccccCC---------CCC-cceecccchHHHH--------hhcceecCCCCchhHHHHHH
Confidence            555444   79999999999654321         121 0133355322110        11246788777766555555


Q ss_pred             HHHHHHHHHHHHHcC
Q 021995          270 YAAGVKDMLDRYFKG  284 (304)
Q Consensus       270 ~~~~~~~~l~~~~~g  284 (304)
                      +.+.+++..+++...
T Consensus       274 L~~N~~~a~~~~~~~  288 (301)
T PRK14194        274 LMKNTVTAARLQAHA  288 (301)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            555555555555544

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.68  E-value=3.9e-07  Score=83.87  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=75.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..+...|++|++||+++...+.           ..+.|             +....++++ +++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence            58999999999999999999999999999987643321           11222             223445554 789


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      ||+|+.|+|.....+.-+-++..+.++++++++....|  +....|.+.+.
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~  131 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK  131 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence            99999999977766655556666778999988555444  55557777774

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.67  E-value=1.6e-07  Score=92.84  Aligned_cols=184  Identities=18%  Similarity=0.194  Sum_probs=117.4

Q ss_pred             ceee-ccccccchhchhHHHhcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCC----------hhHHHHH
Q 021995           12 NAFA-SSGFLRSSSRFSRHYASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSN----------VVSVAED   79 (304)
Q Consensus        12 ~~~~-~~~~~~~~~~~~~~l~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~----------~~~vAE~   79 (304)
                      ...| .+.++.-..+-.++++.. +.--+|+.+..+.+    ..-++.+.++||++..---..          -.++++.
T Consensus        60 ~~~~~adiIlkV~~P~~~e~~~l~~g~tli~~l~p~~n----~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~i  135 (511)
T TIGR00561        60 TLFWQSDIILKVNAPSDAEIAELPAGKALVSFIWPAQN----PELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANI  135 (511)
T ss_pred             cchhcCCEEEEeCCCCHHHHHhcCCCCEEEEEcCccCC----HHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHH
Confidence            4456 455565566666777554 45666666655443    223667899999988642111          1344454


Q ss_pred             HHHHH-HHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh
Q 021995           80 ELMRI-LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE  158 (304)
Q Consensus        80 al~~~-L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~  158 (304)
                      +=... +..+..+....    .|.-    .  ....+.+.++.|+|+|.+|...++.++.+|++|+++|++....+.++.
T Consensus       136 AGy~Avi~Aa~~lgr~~----~g~~----t--aag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       136 AGYRAIIEAAHEFGRFF----TGQI----T--AAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             HHHHHHHHHHHHhhhhc----CCce----e--cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            33221 22222221100    1110    0  011356789999999999999999999999999999998766667776


Q ss_pred             cCceec--CC-------------------------HHhhcCcCCEEEEcC--CCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          159 TGAKFE--ED-------------------------LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       159 ~g~~~~--~~-------------------------l~ell~~aDvVi~~~--p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +|.+..  +.                         +.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||++
T Consensus       206 lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       206 MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             cCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence            765431  00                         345678899998887  3322 23678899999999999999997


Q ss_pred             C
Q 021995          210 R  210 (304)
Q Consensus       210 r  210 (304)
                      -
T Consensus       285 ~  285 (511)
T TIGR00561       285 A  285 (511)
T ss_pred             e
Confidence            4

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.67  E-value=3.3e-07  Score=84.77  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------------cC-------------ceecCCHHhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM  170 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------------~g-------------~~~~~~l~el  170 (304)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...+              .+             +....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            58999999999999999999999999999997643321110              01             1233345 56


Q ss_pred             cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       171 l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +++||+|+.++|...+.+..+-+++-+.++++++|+....|  +....+.+.+.
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~  134 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALE  134 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcC
Confidence            78999999999977654444445555667899999877766  45566667664

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.66  E-value=1.9e-07  Score=89.88  Aligned_cols=129  Identities=14%  Similarity=0.145  Sum_probs=86.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh----------------cCcee--cCCHHhhcCcCCEEEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAKF--EEDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----------------~g~~~--~~~l~ell~~aDvVi~  179 (304)
                      ++|+|||+|.||..+|..+. .|++|++||++..+.+...+                .+...  ..+..+..++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            37999999999999997776 49999999997654333322                12222  2335677899999999


Q ss_pred             cCCCCh----------hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCC---C
Q 021995          180 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH---P  246 (304)
Q Consensus       180 ~~p~~~----------~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~---~  246 (304)
                      |+|...          ..+..+ ++..+ +++|.++|+.|.-++=..+.+.+.+.+..+.      |.+|.+.+..   .
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d  151 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD  151 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence            999651          111222 33444 7999999999998888888888877664433      4666554433   3


Q ss_pred             ccCCCCeEE
Q 021995          247 WRYMPNQAM  255 (304)
Q Consensus       247 l~~~~nv~l  255 (304)
                      ++..|.+++
T Consensus       152 ~~~p~rvv~  160 (388)
T PRK15057        152 NLHPSRIVI  160 (388)
T ss_pred             ccCCCEEEE
Confidence            444455543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.65  E-value=1.1e-07  Score=94.36  Aligned_cols=106  Identities=14%  Similarity=0.129  Sum_probs=76.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV  177 (304)
                      ++|||||.|.||..+|..|...|++|++||+++...+...+                   .+ +...+++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            48999999999999999999999999999997644322111                   12 45667898999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      +.++|...+.+..+-.+.-+.++++++|. ++..++ +...+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~-SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALIG-SSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEEE-EcCCCC-CHHHHHhhcCC
Confidence            99999887666654445555677777554 444333 34567666644

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.63  E-value=1.1e-07  Score=81.19  Aligned_cols=89  Identities=29%  Similarity=0.414  Sum_probs=73.9

Q ss_pred             ccCCCEEEEEeeChh-hHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~I-G~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      +|.|+++.|||.|.+ |..+++.|...|++|++.+|+.              +++.+.+.++|+|+.+++..    +++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii~  102 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLVK  102 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----ceec
Confidence            689999999999996 8889999999999999999852              36778999999999999843    3677


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  230 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g  230 (304)
                      .+.   ++++.++||++...-+|       ..++++.|
T Consensus       103 ~~~---~~~~~viIDla~prdvd-------~~~~~~~G  130 (168)
T cd01080         103 GDM---VKPGAVVIDVGINRVPD-------KSGGKLVG  130 (168)
T ss_pred             HHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence            775   57899999999988777       44555554

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.63  E-value=3.9e-07  Score=90.70  Aligned_cols=115  Identities=20%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~  173 (304)
                      ++|||||.|.||..+|..+...|++|++||+++...+..           .+.|             +....++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            589999999999999999998899999999987544331           2223             345567766 569


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEE-EEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~il-Vn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                      ||+|+-++|.+.+.+..+-.+.-+.++++++| .|+|.-++-   ++..++.. .-+..++..|.
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~-p~r~~G~hff~  147 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKH-PERVAGLHFFN  147 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCC-cccEEEEeecC
Confidence            99999999998888887766655667899999 599876663   56665543 22223455454

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.63  E-value=6e-07  Score=83.72  Aligned_cols=105  Identities=13%  Similarity=0.203  Sum_probs=72.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cC--------------ceecCCHHhhcCcCCEEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g--------------~~~~~~l~ell~~aDvVi  178 (304)
                      ++|+|||.|.||..+|..|...|++|++||++....+...+     .+              +....++++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            58999999999999999999999999999987643332221     11              234457778899999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +++|...+....+-.+.-..++++++++....|-  ....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL--PITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC--CHHHHHhhcC
Confidence            9999765433322234434467777765444442  3557777664

>PRK07680 late competence protein ComER; Validated

Probab=98.60  E-value=1.1e-07  Score=87.12  Aligned_cols=102  Identities=12%  Similarity=0.273  Sum_probs=75.2

Q ss_pred             EEEEEeeChhhHHHHHHhccCCC----eEEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~----~V~~~dr~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      +|+|||+|.||+.+++.|...|.    +|.+|+|++.+.+...+ + ++....+..+++.++|+|++++|.. ....++ 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl-   79 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL-   79 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH-
Confidence            69999999999999999987773    79999997644333332 2 5666668888899999999999832 333443 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      ++..+.++++.++|+++-|  +..+.|.+.+.
T Consensus        80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            4455667888999999865  36666666554

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.59  E-value=1.2e-07  Score=86.23  Aligned_cols=102  Identities=13%  Similarity=0.250  Sum_probs=74.0

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCe---EEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~---V~~~dr~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      +|||||+|+||+.+++.|...|..   +.+++|+..+.+...+ . ++....+.+++++++|+|++++|. +....++. 
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~~vl~-   79 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAEEVLR-   79 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHHHHHH-
Confidence            799999999999999999877754   5788887644433333 3 455667888889999999999993 33444432 


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      + + .++++.++|.+.-  -+..+.|.+.+..+
T Consensus        80 ~-l-~~~~~~~vis~~a--g~~~~~l~~~~~~~  108 (258)
T PRK06476         80 A-L-RFRPGQTVISVIA--ATDRAALLEWIGHD  108 (258)
T ss_pred             H-h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence            2 2 2578899999873  46777777777653

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.58  E-value=3.1e-07  Score=85.09  Aligned_cols=142  Identities=15%  Similarity=0.239  Sum_probs=99.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhccccHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      .-.+|||||+|++|+.+|+.+...|+.|+++||+. -.+.+..+|...++.+.++++ +.|+|++|+... .+..++..-
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilaty  128 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATY  128 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhc
Confidence            34689999999999999999999999999999965 556677888888888888775 499999998632 344444333


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcC
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~  262 (304)
                      -++++|.|++++++..-+...-.++.+-|-+.--.-+.=-.|  .|...++.+..+|=|+ --|-+|+
T Consensus       129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmf--GPksvnh~wqglpfVy-dkvRig~  193 (480)
T KOG2380|consen  129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMF--GPKSVNHEWQGLPFVY-DKVRIGY  193 (480)
T ss_pred             CchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCc--CCCcCCCccccCceEE-EEeeccc
Confidence            456689999999998877776666666665432211111111  2444566666677444 4455554

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.58  E-value=6.5e-07  Score=82.32  Aligned_cols=119  Identities=19%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             ccccCCCEEEEEeeChh-hHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~I-G~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|.+ |+.++..|...|+.|+++...              ..++.+.+++||+|+++++    +.++
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~  214 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV  214 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence            45789999999999998 999999999999999987642              2378899999999999998    4467


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      ++.   ..+|+|+++||+|...+.          +|++.   =||-.++-        ...--.+||--+|--.=+...+
T Consensus       215 i~~---~~ik~gavVIDVGin~~~----------~gkl~---GDVd~~~v--------~~~a~~iTPVPGGVGp~T~a~L  270 (285)
T PRK14189        215 LTA---DMVKPGATVIDVGMNRDD----------AGKLC---GDVDFAGV--------KEVAGYITPVPGGVGPMTITML  270 (285)
T ss_pred             cCH---HHcCCCCEEEEccccccC----------CCCee---CCccHHHH--------HhhceEecCCCCCchHHHHHHH
Confidence            876   457999999999965532          24433   35532111        1122568897777654444443


Q ss_pred             HH
Q 021995          271 AA  272 (304)
Q Consensus       271 ~~  272 (304)
                      ..
T Consensus       271 l~  272 (285)
T PRK14189        271 LV  272 (285)
T ss_pred             HH
Confidence            33

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.56  E-value=3.3e-07  Score=91.07  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=82.9

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP  172 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~  172 (304)
                      =++|||||.|.||+.+|..+...|++|++||+++...+..           .+.|             +....++++ +.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            3589999999999999999999999999999986543321           1122             234567765 56


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                      +||+|+.++|...+.+..+-.++-+.++++++|. |+|.-++   ..+.+++.. ..+..++.-|.
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~  145 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFN  145 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccC
Confidence            9999999999888877776566666778888876 6665444   456666643 33445666554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.56  E-value=3.4e-07  Score=90.69  Aligned_cols=183  Identities=19%  Similarity=0.206  Sum_probs=114.5

Q ss_pred             eee-ccccccchhchhHHHhcCC-CcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCC----------hhHHHHHH
Q 021995           13 AFA-SSGFLRSSSRFSRHYASSG-SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSN----------VVSVAEDE   80 (304)
Q Consensus        13 ~~~-~~~~~~~~~~~~~~l~~~~-~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~----------~~~vAE~a   80 (304)
                      ..| .+.++.-..+-.+++.... .-.+|+.+....+    ..-++.+.++||++..---..          -.++|+.+
T Consensus        62 ~v~~~diilkV~~P~~~e~~~l~~g~~li~~l~p~~~----~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA  137 (509)
T PRK09424         62 AVWQSDIILKVNAPSDDEIALLREGATLVSFIWPAQN----PELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA  137 (509)
T ss_pred             ccccCCEEEEeCCCCHHHHHhcCCCCEEEEEeCcccC----HHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh
Confidence            345 4556666666677776654 4566666655443    223667899999988632211          12333333


Q ss_pred             HHHHHHHH-hCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc
Q 021995           81 LMRILILV-RNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET  159 (304)
Q Consensus        81 l~~~L~~~-R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~  159 (304)
                      =....... ..+         +.+..... .......+.+|.|+|.|.+|...++.++.+|++|+++|+++...+.++++
T Consensus       138 Gy~Av~~aa~~~---------~~~~~g~~-taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl  207 (509)
T PRK09424        138 GYRAVIEAAHEF---------GRFFTGQI-TAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM  207 (509)
T ss_pred             HHHHHHHHHHHh---------cccCCCce-eccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            21111111 111         11111000 00113568999999999999999999999999999999988778888888


Q ss_pred             Cceec--CC-------------------------HHhhcCcCCEEEEcCCCCh-hhhccccHHHHhcCCCCCEEEEcC
Q 021995          160 GAKFE--ED-------------------------LDTMLPKCDIVVVNTPLTE-KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       160 g~~~~--~~-------------------------l~ell~~aDvVi~~~p~~~-~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      |.+..  +.                         +.+.+.++|+|+.|..... ....++.++.++.||+|+++|+++
T Consensus       208 GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        208 GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             CCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence            87632  11                         0112357999999875321 122455689999999999999997

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.55  E-value=1.3e-07  Score=79.64  Aligned_cols=92  Identities=23%  Similarity=0.351  Sum_probs=65.5

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      +|+|+|.|++|.++|..|...|.+|..|.|++...+...+.              ......+++++++++|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999999975322222221              1234578999999999999999954


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      . .+.+ -++....++++..+|++..|-
T Consensus        81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 A-HREV-LEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             G-HHHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred             H-HHHH-HHHHhhccCCCCEEEEecCCc
Confidence            2 2223 355666778999999998774

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.51  E-value=1.2e-06  Score=80.56  Aligned_cols=129  Identities=21%  Similarity=0.199  Sum_probs=89.0

Q ss_pred             cccccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.++.||+|+|||. |.+|+.+|.+|...|+.|++|...              ..++.+.+++||+|+++++..    +
T Consensus       152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~----~  213 (284)
T PRK14179        152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRG----H  213 (284)
T ss_pred             hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcc----c
Confidence            355789999999999 999999999999999999998421              126889999999999999854    4


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      ++....   +|+|+++||+|-..+.          +|++.|   ||-..+-        .-.--.+||=-+|--.=+...
T Consensus       214 ~v~~~~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v--------~~~a~~iTPVPGGVGp~T~a~  269 (284)
T PRK14179        214 FVTKEF---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEV--------AEVASYITPVPGGVGPMTITM  269 (284)
T ss_pred             cCCHHH---ccCCcEEEEecceecC----------CCCeec---CccHHHH--------HhhccEecCCCCCchHHHHHH
Confidence            565544   8999999999855432          244433   5532211        011245899777765555554


Q ss_pred             HHHHHHHHHHHH
Q 021995          270 YAAGVKDMLDRY  281 (304)
Q Consensus       270 ~~~~~~~~l~~~  281 (304)
                      +...+.+..+++
T Consensus       270 L~~N~~~a~~~~  281 (284)
T PRK14179        270 LMEQTYQAALRS  281 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            444444433333

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.50  E-value=3.5e-07  Score=84.68  Aligned_cols=79  Identities=25%  Similarity=0.357  Sum_probs=66.0

Q ss_pred             ccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEc-CCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          112 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       112 ~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~d-r~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      +.++.||+|+||| .|.||+.+|.+|...|+.|++|+ ++.               ++++++++||+|+++++...    
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----  213 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----  213 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence            4478999999999 99999999999999999999995 532               47889999999999998643    


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCc
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      .+....   +|+|+++||+|--.
T Consensus       214 ~v~~~~---lk~GavVIDvGin~  233 (296)
T PRK14188        214 MVKGDW---IKPGATVIDVGINR  233 (296)
T ss_pred             hcchhe---ecCCCEEEEcCCcc
Confidence            444433   89999999998554

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.50  E-value=3.2e-07  Score=83.65  Aligned_cols=101  Identities=16%  Similarity=0.228  Sum_probs=71.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC---CeEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G---~~V~~~dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|++...+...+ +|+....+.++++.++|+|++|+|.. ....++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence            58999999999999999998878   789999997654444444 46666667888899999999999843 222222 2


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +....+  +.++|.+.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            232323  46788887664  4556665554

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.46  E-value=9e-07  Score=83.84  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=75.4

Q ss_pred             hHHHHHHhccCCCeEEEEcCCCC-----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995          129 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  203 (304)
Q Consensus       129 G~~lA~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~  203 (304)
                      |..+|..|...|++|++||++..     ..+...+.|+....+..+++++||+|++++|....++.++ ......++++.
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            78899999888999999999764     2233455677777788899999999999999765466666 46778899999


Q ss_pred             EEEEcCCCchhch-HHHHHHHH
Q 021995          204 LIVNNARGAIMDT-QAVVDACS  224 (304)
Q Consensus       204 ilVn~~rg~~vd~-~aL~~aL~  224 (304)
                      ++||++.++.... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999887766 56666664

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.44  E-value=6.1e-07  Score=82.10  Aligned_cols=90  Identities=22%  Similarity=0.355  Sum_probs=73.2

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      -|.||+|+|||+|+-|++-|..|+..|.+|++--|.. .+.+.+.+.|.+.. +.+|+.+++|+|++.+|...+ ..+..
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q-~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQ-KEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence            4899999999999999999999999999987655544 34667778888765 899999999999999996543 34455


Q ss_pred             HHHHhcCCCCCEE
Q 021995          193 KDRIAKMKKGVLI  205 (304)
Q Consensus       193 ~~~l~~mk~g~il  205 (304)
                      ++.-+.|+.|..|
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            5777888888855

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.44  E-value=8.4e-07  Score=80.90  Aligned_cols=99  Identities=19%  Similarity=0.323  Sum_probs=78.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ++|||||+|+||++++.-|...|    .+|++.+|+..... ...++|+....+.+++..++|+|++++..  .   . -
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q---~-~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q---D-L   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H---h-H
Confidence            58999999999999999998888    57999999876553 66677776566778999999999999962  2   1 1


Q ss_pred             HHHHhcCC---CCCEEEEcCCCchhchHHHHHHHH
Q 021995          193 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       193 ~~~l~~mk---~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      .+.++.++   ++.++|.++-|  +..+.|.+.|.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            45666665   79999999877  45566777665

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.43  E-value=8.5e-08  Score=84.91  Aligned_cols=134  Identities=11%  Similarity=0.116  Sum_probs=90.4

Q ss_pred             ChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHh--ccCCCeEE-EEcC
Q 021995           72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDR  148 (304)
Q Consensus        72 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l--~~~G~~V~-~~dr  148 (304)
                      .+...++|.+..++...|++..         |          . ..++|+|||+|.+|+.+++.+  ...|++++ ++|+
T Consensus        59 ~G~~~~gy~v~~l~~~~~~~l~---------~----------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~  118 (213)
T PRK05472         59 FGKRGVGYNVEELLEFIEKILG---------L----------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV  118 (213)
T ss_pred             cCCCCCCeeHHHHHHHHHHHhC---------C----------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence            3355567888888888887641         1          1 345899999999999999863  46789876 5676


Q ss_pred             CCCChh-HHHhcCceecCCHHhhcCc--CCEEEEcCCCChhh---hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHH
Q 021995          149 VKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKT---RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA  222 (304)
Q Consensus       149 ~~~~~~-~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~~~t---~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a  222 (304)
                      ++.... ......+...+++++++++  .|.+++++|.....   ..+.......-+....+.+|+.+|.+|+..+|..+
T Consensus       119 d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~  198 (213)
T PRK05472        119 DPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVE  198 (213)
T ss_pred             ChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHH
Confidence            542211 1111112233567777754  99999999976542   22222233344566788999999999999999998


Q ss_pred             HHc
Q 021995          223 CSS  225 (304)
Q Consensus       223 L~~  225 (304)
                      |..
T Consensus       199 l~~  201 (213)
T PRK05472        199 LQT  201 (213)
T ss_pred             HHH
Confidence            865

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.42  E-value=1.1e-06  Score=80.78  Aligned_cols=103  Identities=14%  Similarity=0.274  Sum_probs=72.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCC-hhHH-Hhc-CceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~-~~~~-~~~-g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      .+|+|||+|+||..+++.|...|    .+|.+|+++... .... ... ++....+..+++.++|+|++|+|.. ....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence            47999999999999999998777    689999885421 1111 222 2333467888899999999999932 23333


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      + .+..+.++++..+|.+.-|  +..+.|.+.+.
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            2 3444556788899999888  55667777664

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.39  E-value=1.1e-06  Score=76.94  Aligned_cols=90  Identities=14%  Similarity=0.225  Sum_probs=65.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-hHH-HhcC--ceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLE-KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~-~~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++++|+|.|+||..+|++|...|++|++-+++..+. +.. +.++  +.. .+.++..+.+|+|++++|..... .+ .+
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~-~~~~dA~~~aDVVvLAVP~~a~~-~v-~~   78 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITG-GSNEDAAALADVVVLAVPFEAIP-DV-LA   78 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcccccc-CChHHHHhcCCEEEEeccHHHHH-hH-HH
Confidence            589999999999999999999999999886654322 222 2222  223 46788999999999999975331 22 24


Q ss_pred             HHHhcCCCCCEEEEcCCC
Q 021995          194 DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg  211 (304)
                      ++...++ |.++|++.-+
T Consensus        79 ~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          79 ELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHHhC-CeEEEecCCC
Confidence            5555555 8999999865

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.37  E-value=1.2e-06  Score=80.08  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=73.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--CCe-EEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--G~~-V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+|||||+|.||+.+++.+...  +++ +.++|+++...+. .+..+...+.++++++.++|+|+.|.|....  .   +
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~--~---~   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV--E---E   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH--H---H
Confidence            4899999999999999988764  577 4578887543332 2344566667899999999999999874322  1   2


Q ss_pred             HHHhcCCCCCEEEEcCCCchhch---HHHHHHHHcCCce
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~---~aL~~aL~~g~i~  229 (304)
                      -....++.|.-++.++.|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            22334556666777887777663   4566766665543

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.37  E-value=1.5e-06  Score=77.98  Aligned_cols=106  Identities=14%  Similarity=0.256  Sum_probs=70.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC---Ce-EEEEcCC-CCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G---~~-V~~~dr~-~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      ..++|+|||.|+||+.+++.+...|   .+ +++++++ +...+ ....+++....+++++++++|+|++++|... .+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence            3568999999999999999887655   33 6778764 22222 2334566666788899999999999999432 222


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ++ ++.-..++ +.++|.++-|-  +.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~gi--~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAGI--GPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCCC--CHHHHHHHcCCC
Confidence            22 23222334 67899998774  444566666543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.35  E-value=1.5e-06  Score=80.14  Aligned_cols=80  Identities=24%  Similarity=0.393  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+.+++..              .++.+.+++||+|+.+++.    .++
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~  214 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL  214 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence            4478999999999999 99999999999999999888632              2688899999999999984    346


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +.++.   +|+|+++||+|-..
T Consensus       215 i~~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        215 VTKDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCHHH---cCCCcEEEEcCCCc
Confidence            77664   68999999999654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.34  E-value=8.5e-07  Score=86.28  Aligned_cols=96  Identities=26%  Similarity=0.412  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~-~~~~~g~~~--~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.|++|+|+|+|.||+.+++.|...| .+|++++|+..... .+...+...  .+++.+.+.++|+|+.|++.+   ..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~---~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP---HP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC---Cc
Confidence            478999999999999999999999999 67999999864433 444445322  246678889999999997643   35


Q ss_pred             cccHHHHhcCC----CCCEEEEcCCCc
Q 021995          190 MFDKDRIAKMK----KGVLIVNNARGA  212 (304)
Q Consensus       190 ~i~~~~l~~mk----~g~ilVn~~rg~  212 (304)
                      +++.+.++.+.    ...++||.+...
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Pr  280 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPR  280 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            67777776642    235888887543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.34  E-value=1.2e-06  Score=82.09  Aligned_cols=94  Identities=27%  Similarity=0.366  Sum_probs=67.2

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCC-hhHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~-~~~~~~~g~~~~--~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.|++|+|||.|.||+.+++.|+..| .+|++++|++.. .+.+.++|....  +++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999998866 568999998643 345556665432  3466788899999999985533 222


Q ss_pred             ccHHHHhcC-CCCCEEEEcCC
Q 021995          191 FDKDRIAKM-KKGVLIVNNAR  210 (304)
Q Consensus       191 i~~~~l~~m-k~g~ilVn~~r  210 (304)
                      + +..++.. +++.++||++.
T Consensus       255 ~-~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCC
Confidence            2 3333333 35778888874

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.34  E-value=8.6e-06  Score=77.07  Aligned_cols=158  Identities=14%  Similarity=0.143  Sum_probs=118.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcC----ceecCCHHhh---cCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETG----AKFEEDLDTM---LPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g----~~~~~~l~el---l~~aDvVi~~~p~~~~t~~  189 (304)
                      ..||+||+|-||+.+|......|++|.+|||+..+-+.+ ++.+    +....+++|+   ++.-.-|++.+........
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            469999999999999999999999999999987544433 2222    3345567765   5566677777755433344


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      .| ++++..|.+|-++||-+...--|+....++|.+..|.+.+.-|--.|-=...-     |.+     +-|.+.++++.
T Consensus        84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PSi-----MpGG~~eay~~  152 (473)
T COG0362          84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PSI-----MPGGQKEAYEL  152 (473)
T ss_pred             HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CCc-----CCCCCHHHHHH
Confidence            44 68889999999999999999999999999999999999999888776422221     222     45788899998


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 021995          270 YAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       270 ~~~~~~~~l~~~~~g~~~  287 (304)
                      +...+.+ |-.-..|+|.
T Consensus       153 v~pil~~-IaAk~~g~pC  169 (473)
T COG0362         153 VAPILTK-IAAKVDGEPC  169 (473)
T ss_pred             HHHHHHH-HHhhcCCCCc
Confidence            8775544 6666668776

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.32  E-value=5e-07  Score=76.99  Aligned_cols=96  Identities=21%  Similarity=0.316  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--------------------------cCCH
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--------------------------EEDL  167 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--------------------------~~~l  167 (304)
                      .+...+|.|+|.|+.|+..++.++++|++|+.+|..+...+.....+...                          ...+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            56778999999999999999999999999999998653333333333211                          1235


Q ss_pred             HhhcCcCCEEEEc-CCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          168 DTMLPKCDIVVVN-TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       168 ~ell~~aDvVi~~-~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .+.++.+|+|+.+ .-.......++.++.++.||++++++|++
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            6778899999864 33455667899999999999999999997

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.30  E-value=3.9e-06  Score=63.49  Aligned_cols=66  Identities=32%  Similarity=0.473  Sum_probs=56.2

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .+.+++++|+|.|.+|+.+++.+... +.+|.++||                          |+++.+.+..    +.+.
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~----~~~~   69 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAG----VPVL   69 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCC----CCch
Confidence            58899999999999999999999988 677889987                          9999998743    4555


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 021995          193 KDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~  209 (304)
                      ++..+.++++.++++++
T Consensus        70 ~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          70 EEATAKINEGAVVIDLA   86 (86)
T ss_pred             HHHHHhcCCCCEEEecC
Confidence            66688899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN00203 glutamyl-tRNA reductase

Probab=98.28  E-value=1.5e-06  Score=86.45  Aligned_cols=96  Identities=20%  Similarity=0.308  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hc-Cc----eecCCHHhhcCcCCEEEEcCCCChh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET-GA----KFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~-g~----~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+....+... .+ +.    ...+++.+.+.++|+|+.++|..  
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~--  340 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE--  340 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC--
Confidence            3779999999999999999999999997 5999999865444333 33 22    12346778899999999998744  


Q ss_pred             hhccccHHHHhcCCC-------CCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKK-------GVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~-------g~ilVn~~rg~  212 (304)
                       ..++.++.++.+++       ..+|||++-+.
T Consensus       341 -~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        341 -TPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             -CCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence             34777888877642       24788887443

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.28  E-value=1.5e-06  Score=84.72  Aligned_cols=94  Identities=26%  Similarity=0.415  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.|++|+|+|.|.||+.+++.|...|+ +|++++|++.... .+..+|..  ...++.+.+.++|+|+.++|...   .
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~---~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH---P  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC---c
Confidence            3789999999999999999999999998 7999999764433 44555532  22456677889999999987542   3


Q ss_pred             cccHHHHhcC-----CCCCEEEEcCC
Q 021995          190 MFDKDRIAKM-----KKGVLIVNNAR  210 (304)
Q Consensus       190 ~i~~~~l~~m-----k~g~ilVn~~r  210 (304)
                      ++..+.++.+     +.+.++||++-
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            5666666553     24578888864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.27  E-value=5.9e-06  Score=76.33  Aligned_cols=108  Identities=12%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-----------ecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ++|+|||.|.||..+|..|...|++|+.++|++...+...+.|..           ...+.+++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            479999999999999999998899999999865444444443431           13445555 8999999999954 3


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +..++ +...+.+.+++.+|....| +-.++.+.+.+....+.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            33333 3444556777888888777 22345556656555544

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.25  E-value=2.4e-06  Score=75.90  Aligned_cols=94  Identities=17%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------cCc--e-ecCCHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------~g~--~-~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ++|+||| .|.||+.+++.|...|++|.+++|++...+....        .|.  . ...+..+.++++|+|++++|...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            4799997 9999999999999999999999987644332221        111  0 12356778899999999999543


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~v  214 (304)
                       ...++ ++.-..++ +.++|++.-|--.
T Consensus        81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        81 -VLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             -HHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence             22222 22223343 5899999877544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.24  E-value=1.9e-06  Score=74.36  Aligned_cols=103  Identities=15%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh------------------------cCceecCCHHhhcCcC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------------TGAKFEEDLDTMLPKC  174 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~------------------------~g~~~~~~l~ell~~a  174 (304)
                      +|+|||.|.||+.+|..+...|++|..||+++...+...+                        .......+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            6999999999999999999999999999997643221110                        0134557888888 99


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      |+|+=++|-+.+.+.-+-+++-+.++++++|...+.+  +....|...+.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~  127 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS  127 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC
Confidence            9999999988877776667777788999998766544  44555655553

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.24  E-value=2.3e-05  Score=70.13  Aligned_cols=131  Identities=18%  Similarity=0.158  Sum_probs=90.5

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCe---EEEEcCCC----CCh--------hHHHhcCceec-CCHHhhcCcCCE
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MDP--------QLEKETGAKFE-EDLDTMLPKCDI  176 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~---V~~~dr~~----~~~--------~~~~~~g~~~~-~~l~ell~~aDv  176 (304)
                      ..+.++++.|+|.|.+|+.+++.|...|++   ++.+||+.    ...        +.++..+.... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            358899999999999999999999988985   99999983    221        12233321111 267788889999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCC-ceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~-i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      |+.+.|     .++++++.++.|.++.++...+...  .+.-+.++.+.|- +..   |-.  +.+     ..+..|+++
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a---~G~--~~~-----~~Q~nn~~~  163 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVA---TGR--SDF-----PNQVNNVLG  163 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEE---eCC--CCC-----ccccceeee
Confidence            999887     3677889999999999999988443  4554555555443 232   211  111     235578888


Q ss_pred             ccCCC
Q 021995          256 TPHVS  260 (304)
Q Consensus       256 TPHia  260 (304)
                      =|=++
T Consensus       164 fPg~~  168 (226)
T cd05311         164 FPGIF  168 (226)
T ss_pred             cchhh
Confidence            88765

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.22  E-value=5.4e-06  Score=78.18  Aligned_cols=107  Identities=19%  Similarity=0.301  Sum_probs=74.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-----------------ecCCHHhhcCcCCEEEEc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------------~~~~l~ell~~aDvVi~~  180 (304)
                      ++|+|||.|.||..+|..|...|++|.+++|+.. .+...+.|..                 ...+. +.+..+|+|+++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            5799999999999999999999999999998542 2333333322                 12344 567899999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +|... ...++ ++..+.++++.++|.+..| +-..+.+.+.+...++.
T Consensus        81 vk~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         81 VKSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             ecCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            98643 34443 4566667889999988654 34455666666655443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.18  E-value=2.5e-06  Score=73.96  Aligned_cols=137  Identities=13%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------------------cCceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------------------~g~~~~~~l~ell~~aDvV  177 (304)
                      ++|+|||+|.+|-.+|..|...|++|+++|.++...+...+                    .......+.++.++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            58999999999999999999999999999987432211110                    1123446777888999999


Q ss_pred             EEcCCCChhhhccc--------cHHHHhcCCCCCEEEEcCCCchhchHHHH-HHHHcCCceEEEee-cCCCCCCCCCCC-
Q 021995          178 VVNTPLTEKTRGMF--------DKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSSGHIAGYSGD-VWNPQPAPKDHP-  246 (304)
Q Consensus       178 i~~~p~~~~t~~~i--------~~~~l~~mk~g~ilVn~~rg~~vd~~aL~-~aL~~g~i~ga~lD-V~~~ep~~~~~~-  246 (304)
                      ++|+|....-.+..        -++..+.++++.++|.-|.-++=..+.+. ..|++....+.-.+ +|-+|-+.+... 
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            99998433222222        23455678999999999987776666443 44444332100000 245554443332 


Q ss_pred             --ccCCCCeE
Q 021995          247 --WRYMPNQA  254 (304)
Q Consensus       247 --l~~~~nv~  254 (304)
                        +...|.++
T Consensus       161 ~d~~~~~rvV  170 (185)
T PF03721_consen  161 EDFRNPPRVV  170 (185)
T ss_dssp             HHHHSSSEEE
T ss_pred             hhccCCCEEE
Confidence              44556664

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.18  E-value=1e-05  Score=74.94  Aligned_cols=108  Identities=15%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------------~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||.|.||..+|..|...|++|++++| +...+...+.|..             ...+.++....+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999988999999998 4333333333321             1235566678999999999954


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      . +..++ ++..+.++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus        80 ~-~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 Q-LDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             C-HHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            2 33332 3444556778888877665 33456677677655544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.17  E-value=6.8e-06  Score=77.03  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=68.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHHhc----C--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~~~----g--~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++.+.+.+.+.    +  +....++++.+++||+|+++.|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            56799999999999999985543 44 6799999987554433322    3  445678899999999998888754   


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      ..++..   +.+++|+ +||+.-........+-..+
T Consensus       201 ~pvl~~---~~l~~g~-~i~~ig~~~~~~~El~~~~  232 (314)
T PRK06141        201 EPLVRG---EWLKPGT-HLDLVGNFTPDMRECDDEA  232 (314)
T ss_pred             CCEecH---HHcCCCC-EEEeeCCCCcccccCCHHH
Confidence            345554   3468998 4554433333333343333

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.15  E-value=1.8e-05  Score=72.15  Aligned_cols=125  Identities=15%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             HHHHhccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEE
Q 021995          132 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN  207 (304)
Q Consensus       132 lA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn  207 (304)
                      +|+.|+..|  .+|++||+++...+.+.+.|+.  ...+ .+.++++|+|++|+|... +..++ ++....+++|++++|
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEE
Confidence            466777666  8899999987666666677763  2223 578899999999999543 33333 566777999999999


Q ss_pred             cCCCchhchHHHHHHHHcCCceEEEe-ecCCCC---CCCCCCCccCCCCeEEccCCC
Q 021995          208 NARGAIMDTQAVVDACSSGHIAGYSG-DVWNPQ---PAPKDHPWRYMPNQAMTPHVS  260 (304)
Q Consensus       208 ~~rg~~vd~~aL~~aL~~g~i~ga~l-DV~~~e---p~~~~~~l~~~~nv~lTPHia  260 (304)
                      ++.-+.--.+++.+.+. ......+. -.|-+|   |...+..++.-.++++||+-.
T Consensus        78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            99877666666666666 22232222 122222   222356788888999999876

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.14  E-value=2.6e-05  Score=71.79  Aligned_cols=124  Identities=21%  Similarity=0.286  Sum_probs=87.5

Q ss_pred             cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.++.||++.|||-+. +|+.++..|...|+.|+.++..              ..++.+.+++||+|+.+++.    .+
T Consensus       152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~----p~  213 (284)
T PRK14190        152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGK----PK  213 (284)
T ss_pred             cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCC----CC
Confidence            34578999999999755 8999999999999999988642              13688999999999999963    35


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      ++..+.+   |+|+++||+|...+.          +|++.   =||-..+-       . ..--.+||--+|--.-+...
T Consensus       214 ~i~~~~i---k~gavVIDvGi~~~~----------~gkl~---GDvd~e~v-------~-~~a~~iTPVPGGVGpvT~a~  269 (284)
T PRK14190        214 LITADMV---KEGAVVIDVGVNRLE----------NGKLC---GDVDFDNV-------K-EKASYITPVPGGVGPMTITM  269 (284)
T ss_pred             cCCHHHc---CCCCEEEEeeccccC----------CCCee---ccCcHHHH-------h-hhceEecCCCCCChHHHHHH
Confidence            7887775   899999999966532          33433   35532110       1 11256899888876555554


Q ss_pred             HHHHHHH
Q 021995          270 YAAGVKD  276 (304)
Q Consensus       270 ~~~~~~~  276 (304)
                      +...+++
T Consensus       270 L~~N~~~  276 (284)
T PRK14190        270 LMHNTVE  276 (284)
T ss_pred             HHHHHHH
Confidence            4444433

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.13  E-value=9.6e-06  Score=68.63  Aligned_cols=81  Identities=25%  Similarity=0.343  Sum_probs=58.1

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.++...              .++++.+++||+|+.+++-    .++
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~----~~~   92 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGK----PNL   92 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSS----TT-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecc----ccc
Confidence            3479999999999985 99999999999999999887632              4788999999999999973    355


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCch
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      |..+   .+|+|+++||++.-..
T Consensus        93 i~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   93 IKAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             B-GG---GS-TTEEEEE--CEEE
T ss_pred             cccc---cccCCcEEEecCCccc
Confidence            6544   4699999999986554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=1.3e-05  Score=73.79  Aligned_cols=80  Identities=19%  Similarity=0.329  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-|. +|+.++..|...|+.|+.+++..              .++++.+++||+|+.+++-.    ++
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p----~~  215 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKP----GF  215 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCc----cc
Confidence            4578999999999999 99999999999999999987531              36889999999999999532    45


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..   ..+|+|+++||+|-..
T Consensus       216 v~~---~~vk~gavVIDvGin~  234 (285)
T PRK10792        216 IPG---EWIKPGAIVIDVGINR  234 (285)
T ss_pred             ccH---HHcCCCcEEEEccccc
Confidence            655   4469999999998443

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.09  E-value=1e-05  Score=73.81  Aligned_cols=97  Identities=19%  Similarity=0.330  Sum_probs=63.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++|+|||+|+||.++++.|...|    .++++++++...      .+.....+..+++.++|+|++|+|.. .+..++ 
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavkp~-~~~~vl-   74 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVKPD-LAGKVL-   74 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeCHH-HHHHHH-
Confidence            468999999999999999998665    248899886532      23334457778888999999998832 333443 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      .+....++++ .+|.+.-|-  +.+.+.+.+.
T Consensus        75 ~~i~~~l~~~-~iIS~~aGi--~~~~l~~~~~  103 (260)
T PTZ00431         75 LEIKPYLGSK-LLISICGGL--NLKTLEEMVG  103 (260)
T ss_pred             HHHHhhccCC-EEEEEeCCc--cHHHHHHHcC
Confidence            3343445544 556555453  3455555443

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.08  E-value=1.1e-05  Score=74.39  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHH-HhcCc----eecCCHHhhcCcCCEEEEcCCCChh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETGA----KFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~-~~~g~----~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ..+.++++.|+|.|.+|+.++..|...| .+|++++|+..+.+.. ...+.    ....++.+.+.++|+|+.++|....
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~  198 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS  198 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence            4688999999999999999999999999 6899999986443322 22221    1111345677899999999996532


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ...-...-.+..++++.+++|+.
T Consensus       199 ~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        199 GELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CCCCCCCCCHHHcCCCCEEEEee
Confidence            11000011123445666666663

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.08  E-value=3.1e-05  Score=64.18  Aligned_cols=80  Identities=24%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|++|.|+|-+ .+|+.++..|...|+.|..++++.              .++++.+++||+|+.+++..    ++
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~   84 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK   84 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence            447999999999975 589999999999999999988632              26888999999999999854    56


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ++.+.   +|+|++++|++...
T Consensus        85 i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          85 VPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             cCHHH---cCCCCEEEEcCCCc
Confidence            76655   68999999998544

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=1.3e-05  Score=73.68  Aligned_cols=79  Identities=27%  Similarity=0.363  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.++..|...|+.|++++...              .++.+..++||+|+.++.-.    ++
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p----~~  220 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVK----HL  220 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCc----cc
Confidence            4578999999999999 99999999999999999887421              36888999999999987532    46


Q ss_pred             ccHHHHhcCCCCCEEEEcCCC
Q 021995          191 FDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +..+   .+|+|+++||+|-.
T Consensus       221 i~~~---~vk~gavVIDvGin  238 (287)
T PRK14176        221 IKAD---MVKEGAVIFDVGIT  238 (287)
T ss_pred             cCHH---HcCCCcEEEEeccc
Confidence            6665   56899999999854

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=1.2e-05  Score=73.86  Aligned_cols=80  Identities=20%  Similarity=0.319  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|+|.+ ..|+.+|..|..+|+.|+.+.++.              .++.+.+++||+|+.+++..    ++
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~l  208 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GF  208 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cc
Confidence            457899999999999 899999999999999999887532              36889999999999999732    67


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +.++.+   |+|+++||+|-..
T Consensus       209 v~~~~v---k~GavVIDVgi~~  227 (279)
T PRK14178        209 ITPDMV---KPGATVIDVGINQ  227 (279)
T ss_pred             cCHHHc---CCCcEEEEeeccc
Confidence            877774   9999999998543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.06  E-value=1.8e-05  Score=76.82  Aligned_cols=91  Identities=16%  Similarity=0.357  Sum_probs=65.6

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHhcC-c--eecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG-A--KFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~~g-~--~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .+.|+++.|||.|.||+.+++.|...|+ ++++++|+..+.+ .+..++ .  ..++++.+.+.++|+|+.|++..   .
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            5789999999999999999999999896 5999999864433 333343 2  23356678899999999998753   2


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .+|..+...  .+..++||.+
T Consensus       255 ~vi~~~~~~--~~~~~~iDLa  273 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDIS  273 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeC
Confidence            355555432  2335677775

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=1.6e-05  Score=73.39  Aligned_cols=80  Identities=23%  Similarity=0.334  Sum_probs=65.7

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.++..|...|++|+++++..              .++.+.++++|+|+.+++. +   +.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~-~---~~  215 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGK-P---EL  215 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCC-C---Cc
Confidence            4578999999999998 99999999999999999998721              2577778999999999962 2   35


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.   +++|++++|++-..
T Consensus       216 v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        216 IKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             CCHHH---cCCCCEEEEEEEee
Confidence            66554   69999999998544

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=1.1e-05  Score=74.31  Aligned_cols=123  Identities=20%  Similarity=0.230  Sum_probs=85.5

Q ss_pred             ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|++|.|||-| .+|+.+|..|...|+.|+++....              .++.+.+++||+|+.+++.    .++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~----p~~  213 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGK----PDL  213 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCC----CCc
Confidence            457899999999999 899999999999999999885421              2577899999999999973    357


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+.+   |+|+++||+|-..+-          +|++.|   ||-..+-        ...--.+||--+|--.-+...+
T Consensus       214 i~~~~v---k~GavVIDvGi~~~~----------~gklvG---Dvd~e~v--------~~~a~~iTPVPGGVGpvT~a~L  269 (285)
T PRK14191        214 IKASMV---KKGAVVVDIGINRLN----------DGRLVG---DVDFENV--------APKASFITPVPGGVGPMTIVSL  269 (285)
T ss_pred             CCHHHc---CCCcEEEEeeccccc----------CCceec---cccHHHH--------hhhccEEecCCCCChHHHHHHH
Confidence            777765   999999999855421          244433   5432111        0112458997777655544444


Q ss_pred             HHHHHH
Q 021995          271 AAGVKD  276 (304)
Q Consensus       271 ~~~~~~  276 (304)
                      .+.+.+
T Consensus       270 ~~N~~~  275 (285)
T PRK14191        270 LENTLI  275 (285)
T ss_pred             HHHHHH
Confidence            443433

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.04  E-value=2.8e-05  Score=67.58  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHh---cCceec--CC----HHhhcCcCCEEEEcC
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---TGAKFE--ED----LDTMLPKCDIVVVNT  181 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~---~g~~~~--~~----l~ell~~aDvVi~~~  181 (304)
                      +.++.||++.|||-+. +|+.+|..|...|+.|+.+|.+....  +..   ..-...  .+    +.+.+++||+|+.++
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence            5689999999999876 79999999999999999997533110  000   000001  12    778999999999999


Q ss_pred             CCChhhhcc-ccHHHHhcCCCCCEEEEcCC
Q 021995          182 PLTEKTRGM-FDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       182 p~~~~t~~~-i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +..    ++ +..+.   .|+|+++||+|-
T Consensus       135 G~~----~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         135 PSP----NYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             CCC----CCccCHHH---cCCCcEEEEcCC
Confidence            843    45 66665   589999999983

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.03  E-value=1.1e-05  Score=74.28  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=73.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCce------ecCCHHhhcCcCCEEEEcC--CCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PLT  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~------~~~~l~ell~~aDvVi~~~--p~~  184 (304)
                      .+...+|.|||.|-+|...|+.+..+|.+|+..|.+.......+. ++.+      ....+++.+.++|+|+-++  |. 
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg-  243 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG-  243 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence            456679999999999999999999999999999987533322222 2222      1245788999999998653  53 


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .....++.++.+++||||+++||++
T Consensus       244 akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         244 AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCCceehhHHHHHhcCCCcEEEEEE
Confidence            3445788899999999999999995

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=7.3e-05  Score=68.75  Aligned_cols=122  Identities=21%  Similarity=0.273  Sum_probs=85.0

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++++..++||+|+++++-    .++
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----p~~  212 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGV----PHF  212 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence            4578999999999866 89999999999999999886421              3688999999999999973    357


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+.   +|+|+++||+|-..+.          +|++.   =||-..+-.        -.--.+||=-+|--.-+...+
T Consensus       213 i~~~~---vk~GavVIDvGin~~~----------~gkl~---GDVd~~~v~--------~~a~~iTPVPGGVGp~T~a~L  268 (282)
T PRK14169        213 IGADA---VKPGAVVIDVGISRGA----------DGKLL---GDVDEAAVA--------PIASAITPVPGGVGPMTIASL  268 (282)
T ss_pred             cCHHH---cCCCcEEEEeeccccC----------CCCee---ecCcHHHHH--------hhccEecCCCCCcHHHHHHHH
Confidence            77765   5899999999954421          34443   355322111        112468897777655444444


Q ss_pred             HHHHH
Q 021995          271 AAGVK  275 (304)
Q Consensus       271 ~~~~~  275 (304)
                      ...++
T Consensus       269 ~~N~~  273 (282)
T PRK14169        269 MAQTV  273 (282)
T ss_pred             HHHHH
Confidence            33333

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.99  E-value=2.8e-05  Score=71.28  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-Hhc---CceecCCHHh-hcCcCCEEEEcCCCCh--h
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET---GAKFEEDLDT-MLPKCDIVVVNTPLTE--K  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~---g~~~~~~l~e-ll~~aDvVi~~~p~~~--~  186 (304)
                      ...+++++|+|.|.+|+.++..|...|++|++++|+..+.+.. +..   +.....++++ ...++|+|+.++|...  .
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~  193 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN  193 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence            3568899999999999999999998899999999976433222 221   2111123433 3457999999999742  1


Q ss_pred             hhc-cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          187 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       187 t~~-~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      ... .++   ...++++.+++|+.-.+.. + .|.+..++..+
T Consensus       194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~  231 (270)
T TIGR00507       194 IDEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGT  231 (270)
T ss_pred             CCCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCC
Confidence            111 122   2446788888888765532 2 35555444433

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.99  E-value=2.4e-05  Score=73.66  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhcc--CCCeEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~--~G~~V~~~dr~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      -+++||||+|.+|+..++.+..  ...+|.+|||+..+.+.+.    +++  +..+.+.++++++||+|++|+|..+   
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---
Confidence            5789999999999997766543  2457999999875544322    335  3456789999999999999998642   


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      -++..+   .+|+|+.+..+|..
T Consensus       205 P~~~~~---~l~~g~~v~~vGs~  224 (325)
T TIGR02371       205 PVVKAD---WVSEGTHINAIGAD  224 (325)
T ss_pred             cEecHH---HcCCCCEEEecCCC
Confidence            455544   45999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=3.6e-05  Score=70.82  Aligned_cols=127  Identities=22%  Similarity=0.237  Sum_probs=87.3

Q ss_pred             cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++.+.+++||+|+.+++-.    +
T Consensus       151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~----~  212 (284)
T PRK14170        151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLA----K  212 (284)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCc----C
Confidence            34578999999999876 89999999998899999886421              36889999999999999732    5


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      ++..+.   .|+|+++||+|-..+.          +|++.|   ||-...-       .+ .--.+||--+|--.=+...
T Consensus       213 ~i~~~~---vk~GavVIDvGin~~~----------~gkl~G---Dvdfe~~-------~~-~a~~iTPVPGGVGpvT~a~  268 (284)
T PRK14170        213 FVKKDY---IKPGAIVIDVGMDRDE----------NNKLCG---DVDFDDV-------VE-EAGFITPVPGGVGPMTITM  268 (284)
T ss_pred             ccCHHH---cCCCCEEEEccCcccC----------CCCeec---ccchHHH-------Hh-hccEecCCCCChHHHHHHH
Confidence            677665   5899999999965531          344443   5532111       00 1246788777765555544


Q ss_pred             HHHHHHHHHH
Q 021995          270 YAAGVKDMLD  279 (304)
Q Consensus       270 ~~~~~~~~l~  279 (304)
                      +.+.+.+..+
T Consensus       269 L~~N~~~a~~  278 (284)
T PRK14170        269 LLANTLKAAK  278 (284)
T ss_pred             HHHHHHHHHH
Confidence            4444443333

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.98  E-value=0.00015  Score=71.61  Aligned_cols=137  Identities=13%  Similarity=0.126  Sum_probs=86.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHh-----------------cC--ceecCCHHhhcCcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKE-----------------TG--AKFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~-----------------~g--~~~~~~l~ell~~aDv  176 (304)
                      ++|+|||+|.+|..+|..|...  |++|+++|.++.+.+...+                 .+  ....++.++.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            5899999999999999999865  6889999986533222110                 01  2334566778899999


Q ss_pred             EEEcCCCChh-----------hhcc--ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee-cCCCCCCC
Q 021995          177 VVVNTPLTEK-----------TRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP  242 (304)
Q Consensus       177 Vi~~~p~~~~-----------t~~~--i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD-V~~~ep~~  242 (304)
                      +++|+|....           ...+  .-++.-+.++++.++|.-|.-++=-.+.+...|.+.. .|.-.. +|.+|-+.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~  160 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA  160 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence            9999863221           1111  1234556679999999988866666667777766521 110001 25566554


Q ss_pred             CC---CCccCCCCeEE
Q 021995          243 KD---HPWRYMPNQAM  255 (304)
Q Consensus       243 ~~---~~l~~~~nv~l  255 (304)
                      +.   +.+...|.+++
T Consensus       161 ~G~a~~d~~~p~riVi  176 (473)
T PLN02353        161 EGTAIEDLFKPDRVLI  176 (473)
T ss_pred             CCCcccccCCCCEEEE
Confidence            43   34555666654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.96  E-value=1.7e-05  Score=68.93  Aligned_cols=97  Identities=15%  Similarity=0.083  Sum_probs=64.0

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-c----Cc--ee--c---CCHHhhcCcCCEEEE
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-T----GA--KF--E---EDLDTMLPKCDIVVV  179 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~----g~--~~--~---~~l~ell~~aDvVi~  179 (304)
                      ..+.++++.|+|. |.+|+.+++.|...|++|.+++|+..+.+...+ .    +.  ..  .   +++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            3578999999995 999999999999889999999987533222211 1    11  11  1   233467889999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      +.|....+  ..  ..-...+++.+++|+.+.+.
T Consensus       104 at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~  133 (194)
T cd01078         104 AGAAGVEL--LE--KLAWAPKPLAVAADVNAVPP  133 (194)
T ss_pred             CCCCCcee--ch--hhhcccCceeEEEEccCCCC
Confidence            88865431  11  11112445778888776553

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.95  E-value=2.1e-05  Score=75.82  Aligned_cols=96  Identities=25%  Similarity=0.396  Sum_probs=70.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCC-hhHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~-~~~~~~~g~~~--~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      +|.++++.|||.|.||..+|+.|...|. +|++.+|+..+ .+.++++|+.+  .+++.+.+.++|+|++++...   ..
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~---~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP---HP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC---cc
Confidence            4889999999999999999999999995 58899998744 34566777543  456677899999999987532   34


Q ss_pred             cccHHHHhcC---CCCCEEEEcCCCc
Q 021995          190 MFDKDRIAKM---KKGVLIVNNARGA  212 (304)
Q Consensus       190 ~i~~~~l~~m---k~g~ilVn~~rg~  212 (304)
                      ++..+.+...   ++.-++||++-+.
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCC
Confidence            5655555433   1225788887443

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.92  E-value=0.00016  Score=67.00  Aligned_cols=135  Identities=20%  Similarity=0.218  Sum_probs=90.4

Q ss_pred             cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.++.||++.|||-+. +|+.++..|...|+.|+.+...              ..++++.+++||+|+.++.-    .+
T Consensus       161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk----~~  222 (299)
T PLN02516        161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQ----AM  222 (299)
T ss_pred             hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCC----cC
Confidence            35579999999999876 7999999999889999988642              13688999999999999863    26


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC-CceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  268 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~  268 (304)
                      ++..+.   +|+|+++||+|-..+-+.     ...+| +   ..-||-..+-        ...--.+||--+|--.-+..
T Consensus       223 ~i~~~~---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v--------~~~a~~iTPVPGGVGp~T~a  283 (299)
T PLN02516        223 MIKGDW---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV--------SKVAGWITPVPGGVGPMTVA  283 (299)
T ss_pred             ccCHHH---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh--------hhhceEecCCCCCchHHHHH
Confidence            777665   589999999985442111     11112 2   3345532111        11123589987877665555


Q ss_pred             HHHHHHHHHHHHHH
Q 021995          269 RYAAGVKDMLDRYF  282 (304)
Q Consensus       269 ~~~~~~~~~l~~~~  282 (304)
                      .+...+++..++++
T Consensus       284 ~L~~N~v~a~~~~~  297 (299)
T PLN02516        284 MLLKNTVDGAKRVF  297 (299)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55554544444444

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=4.4e-05  Score=70.23  Aligned_cols=81  Identities=19%  Similarity=0.329  Sum_probs=66.5

Q ss_pred             cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.++.||++.|||-+. +|+.++..|...|+.|+.++...              .++.+..++||+|+.+++-    .+
T Consensus       153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----~~  214 (284)
T PRK14177        153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGK----PE  214 (284)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCC----cC
Confidence            34578999999999765 89999999999999999887522              3688899999999999973    35


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCc
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ++..+.   .|+|+++||+|-..
T Consensus       215 ~i~~~~---ik~gavVIDvGin~  234 (284)
T PRK14177        215 FIKADW---ISEGAVLLDAGYNP  234 (284)
T ss_pred             ccCHHH---cCCCCEEEEecCcc
Confidence            677665   58999999998543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=4.5e-05  Score=70.06  Aligned_cols=80  Identities=25%  Similarity=0.364  Sum_probs=65.9

Q ss_pred             ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-| .+|+.++.+|...|+.|+.+...              ..++.+..++||+|+.++.-    .++
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGk----p~~  213 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGK----PNL  213 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCc----ccc
Confidence            457899999999998 79999999999889999877542              13678899999999999973    356


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.   .|+|+++||+|-..
T Consensus       214 i~~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        214 ITEDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77665   48999999999544

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.88  E-value=3.2e-05  Score=72.22  Aligned_cols=101  Identities=21%  Similarity=0.267  Sum_probs=72.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------------cCceecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------------~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||.|..|.++|+.|...|++|..|.|++.-......              .++....+++++++.||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            58999999999999999999999999999985422111111              1234457899999999999999994


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  220 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~  220 (304)
                      . ..+.++ ++.-..++++..+|+++-|=-.+.-.+.
T Consensus        82 ~-~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~l~  116 (329)
T COG0240          82 Q-ALREVL-RQLKPLLLKDAIIVSATKGLEPETGRLL  116 (329)
T ss_pred             H-HHHHHH-HHHhhhccCCCeEEEEeccccCCCcchH
Confidence            2 222222 3333456899999999988665544443

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=4.8e-05  Score=69.93  Aligned_cols=80  Identities=21%  Similarity=0.353  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++++..++||+|+.++.-    .++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGk----p~~  213 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNL  213 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCc
Confidence            4578999999999866 89999999998899999887522              3688999999999999973    367


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.   .|+|+++||+|-..
T Consensus       214 i~~~~---vk~GavVIDvGin~  232 (282)
T PRK14166        214 LRSDM---VKEGVIVVDVGINR  232 (282)
T ss_pred             cCHHH---cCCCCEEEEecccc
Confidence            77765   58999999998443

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=5.1e-05  Score=69.94  Aligned_cols=130  Identities=22%  Similarity=0.247  Sum_probs=87.4

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++++..++||+|+.++.-    .++
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGk----p~~  211 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGR----PHL  211 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence            4578999999999765 89999999998999999886522              3688999999999999973    367


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+.+   |+|+++||+|-..+.++        +|+. ...=||- .+-       .. .--.+||=-+|--.-+...+
T Consensus       212 i~~~~v---k~GavVIDVGin~~~~~--------~gk~-~l~GDVd-~~v-------~~-~a~~iTPVPGGVGp~T~a~L  270 (287)
T PRK14173        212 ITPEMV---RPGAVVVDVGINRVGGN--------GGRD-ILTGDVH-PEV-------AE-VAGALTPVPGGVGPMTVAML  270 (287)
T ss_pred             cCHHHc---CCCCEEEEccCccccCC--------CCce-eeecccc-HhH-------Hh-hCcEEecCCCChhHHHHHHH
Confidence            777664   89999999996654221        3330 0233554 111       11 11358887777655444444


Q ss_pred             HHHHHHHHHH
Q 021995          271 AAGVKDMLDR  280 (304)
Q Consensus       271 ~~~~~~~l~~  280 (304)
                      ...+++..++
T Consensus       271 ~~N~~~a~~~  280 (287)
T PRK14173        271 MANTVIAALR  280 (287)
T ss_pred             HHHHHHHHHH
Confidence            4444433333

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.00017  Score=67.52  Aligned_cols=159  Identities=13%  Similarity=0.154  Sum_probs=118.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhh---cCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~~~~~l~el---l~~aDvVi~~~p~~~~t~~  189 (304)
                      ..+|+||++-||+.++......|+.|.+|+|+..+.+.+..     ..+....+++++   ++.-..|++.+........
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            46899999999999999999999999999998755433221     123334577776   4567788887776666666


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      +| +++...|.+|-++||-+...--|+..-.+.|.+..|...+.-|--.|--...-|     .+     +-|.+.+++..
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----Sl-----MpGg~~~Awp~  155 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----SL-----MPGGSKEAWPH  155 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----cc-----CCCCChHHHHH
Confidence            65 688899999999999999999999999999999999888888877764322222     11     44677888888


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 021995          270 YAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       270 ~~~~~~~~l~~~~~g~~~  287 (304)
                      +..++...--..-.|+|.
T Consensus       156 ik~ifq~iaakv~~~epC  173 (487)
T KOG2653|consen  156 IKDIFQKIAAKVSDGEPC  173 (487)
T ss_pred             HHHHHHHHHHHhcCCCCC
Confidence            777665543333355665

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=5.2e-05  Score=70.23  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=87.3

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++++.+++||+|+++++-.    ++
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp----~~  214 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRP----NL  214 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----Cc
Confidence            4578999999999865 89999999999999999886421              36889999999999999832    56


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+.   +|+|+++||+|-..+.|..      ++|++.   =||-..+-       .+ .--.+||--+|--.=+...+
T Consensus       215 i~~~~---ik~gavVIDvGin~~~~~~------~~gkl~---GDvd~~~v-------~~-~a~~iTPVPGGVGp~T~a~L  274 (297)
T PRK14186        215 IGAEM---VKPGAVVVDVGIHRLPSSD------GKTRLC---GDVDFEEV-------EP-VAAAITPVPGGVGPMTVTML  274 (297)
T ss_pred             cCHHH---cCCCCEEEEeccccccccc------cCCcee---CCccHHHH-------Hh-hceEecCCCCCchHHHHHHH
Confidence            77665   5899999999965532211      134433   35432111       11 12468998888765555544


Q ss_pred             HHHHHH
Q 021995          271 AAGVKD  276 (304)
Q Consensus       271 ~~~~~~  276 (304)
                      ...+++
T Consensus       275 ~~Nl~~  280 (297)
T PRK14186        275 LVNTVL  280 (297)
T ss_pred             HHHHHH
Confidence            444433

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.87  E-value=7.6e-05  Score=68.49  Aligned_cols=115  Identities=24%  Similarity=0.335  Sum_probs=82.6

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.++...              .++.+..++||+|+.+++-.    ++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp----~~  214 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRP----KF  214 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----Cc
Confidence            4578999999999765 89999999999999999887521              36889999999999999733    57


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      +..+.   .|+|+++||+|-..+           +|++.   =||-..+-       .+ .--.+||--+|--.=+...
T Consensus       215 i~~~~---ik~gavVIDvGin~~-----------~gkl~---GDvd~~~v-------~~-~a~~iTPVPGGVGp~T~a~  268 (278)
T PRK14172        215 IDEEY---VKEGAIVIDVGTSSV-----------NGKIT---GDVNFDKV-------ID-KASYITPVPGGVGSLTTTL  268 (278)
T ss_pred             cCHHH---cCCCcEEEEeecccc-----------CCcee---eeccHHHH-------Hh-hccEecCCCCCccHHHHHH
Confidence            77766   589999999985442           23443   36532111       01 1245899888876554443

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=5.7e-05  Score=69.44  Aligned_cols=79  Identities=23%  Similarity=0.328  Sum_probs=65.4

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++.+..++||+|+.+++-    .++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGk----p~~  214 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNF  214 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCC----cCc
Confidence            4578999999999765 89999999998899999887521              3688889999999999973    356


Q ss_pred             ccHHHHhcCCCCCEEEEcCCC
Q 021995          191 FDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +..+.   .|+|+++||+|-.
T Consensus       215 i~~~~---vk~gavVIDvGin  232 (282)
T PRK14180        215 ITADM---VKEGAVVIDVGIN  232 (282)
T ss_pred             CCHHH---cCCCcEEEEeccc
Confidence            77655   5899999999843

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=6.3e-05  Score=69.53  Aligned_cols=80  Identities=21%  Similarity=0.345  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++.+.+++||+|+.+++-    .++
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGk----p~~  216 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGI----PNF  216 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence            4578999999999866 89999999999999999887522              3688999999999999973    356


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.   .|+|+++||+|-..
T Consensus       217 i~~~~---ik~gaiVIDVGin~  235 (294)
T PRK14187        217 VKYSW---IKKGAIVIDVGINS  235 (294)
T ss_pred             cCHHH---cCCCCEEEEecccc
Confidence            77666   47999999998544

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.84  E-value=5.7e-05  Score=71.17  Aligned_cols=87  Identities=26%  Similarity=0.261  Sum_probs=61.5

Q ss_pred             EEEEeeChhhHHHHHHhcc-CCCeEEEEcC-CCCCh-hHHHhcCce------------------ecCCHHhhcCcCCEEE
Q 021995          120 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETGAK------------------FEEDLDTMLPKCDIVV  178 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr-~~~~~-~~~~~~g~~------------------~~~~l~ell~~aDvVi  178 (304)
                      |||+|||.||+.+++.+.. -+++|++++. ++... ..+..+++.                  ...++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999998763 4788776543 22111 222222321                  1346889999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .|.|.   +.+..+++.+..|+.+.+|+-.-
T Consensus        81 e~Tp~---~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DATPG---GIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECCCC---CCChhhHHHHHhCCcCEEEECCC
Confidence            99864   45678889999999888887543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.84  E-value=5.9e-05  Score=71.31  Aligned_cols=100  Identities=29%  Similarity=0.370  Sum_probs=71.4

Q ss_pred             ccccCCCEEEEEee-ChhhHHHHHHhc-cCC-CeEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          112 AYDLEGKTVGTVGC-GRIGKLLLQRLK-PFN-CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       112 ~~~L~g~~vgIIG~-G~IG~~lA~~l~-~~G-~~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      +..+.|++|.|+|. |.||+.+++.|. ..| .+++.++|+...... ..+.+.....++++.+.++|+|+.+.....  
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~--  227 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK--  227 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc--
Confidence            34689999999998 899999999996 456 478899987543332 223321223468899999999987764322  


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhch
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDT  216 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~  216 (304)
                      .-+++.+.   ++++.++||+++..=||.
T Consensus       228 ~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        228 GVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            12467664   489999999998876654

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.83  E-value=0.00015  Score=66.28  Aligned_cols=119  Identities=26%  Similarity=0.302  Sum_probs=86.2

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.+|+|+++.|||-++ +|+.++..|...++.|+++....              .++.+..++||+|+.++-.    .++
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~----p~~  212 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGK----PHF  212 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCC----ccc
Confidence            4578999999999988 69999999999999999987632              3788999999999999863    256


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+   ..|+|+++||++--.+-+          +++.   -||-..+.        ....-.+||--||--+-+...+
T Consensus       213 i~~d---~vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v--------~~~a~~iTPVPGGVGPmTvamL  268 (283)
T COG0190         213 IKAD---MVKPGAVVIDVGINRVND----------GKLV---GDVDFDSV--------KEKASAITPVPGGVGPMTVAML  268 (283)
T ss_pred             cccc---cccCCCEEEecCCccccC----------CceE---eeccHHHH--------HHhhcccCCCCCccCHHHHHHH
Confidence            6544   468999999999655433          4443   36644331        1123467888888766555544


Q ss_pred             HH
Q 021995          271 AA  272 (304)
Q Consensus       271 ~~  272 (304)
                      ..
T Consensus       269 l~  270 (283)
T COG0190         269 LE  270 (283)
T ss_pred             HH
Confidence            43

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.83  E-value=4.2e-05  Score=59.82  Aligned_cols=87  Identities=18%  Similarity=0.199  Sum_probs=59.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++|++|.|||.|.+|..=++.|...|++|+++++..   +..+ ..++ ....+++.+.++|+|+.+.+..     -++
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~-~~i~~~~~~~~~~l~~~~lV~~at~d~-----~~n   74 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE-GLIQLIRREFEEDLDGADLVFAATDDP-----ELN   74 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH-TSCEEEESS-GGGCTTESEEEE-SS-H-----HHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh-hHHHHHhhhHHHHHhhheEEEecCCCH-----HHH
Confidence            5899999999999999999999999999999999864   1111 1111 1234567788999998887642     234


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 021995          193 KDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~  209 (304)
                      +......+.-.++||+.
T Consensus        75 ~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   75 EAIYADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHhhCCEEEEEC
Confidence            55555666667788875

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.83  E-value=4.9e-05  Score=71.40  Aligned_cols=93  Identities=14%  Similarity=0.247  Sum_probs=63.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhc-CcCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTML-PKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~l~ell-~~aDvVi~~~p  182 (304)
                      ++|+|||.|.||..++..|...|.+|..|+|++...+...+.              ++....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            369999999999999999999999999999865322222211              112335666665 58999999999


Q ss_pred             CChhhhccccHHHHh-cCCCCCEEEEcCCCc
Q 021995          183 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA  212 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~-~mk~g~ilVn~~rg~  212 (304)
                      .. .+..++ ++..+ .++++..+|.+..|-
T Consensus        81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            53 233333 33334 566777777777664

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.82  E-value=4.2e-05  Score=72.54  Aligned_cols=95  Identities=17%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             EEEEEeeChhhHHHHHHhccCC--------CeEEEEcCCCC--ChhHHHh-----------------cCceecCCHHhhc
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQLEKE-----------------TGAKFEEDLDTML  171 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G--------~~V~~~dr~~~--~~~~~~~-----------------~g~~~~~~l~ell  171 (304)
                      +|+|||.|+.|.++|..|...|        .+|..|.|...  ..+....                 .++...+++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998766        99999987320  1111110                 0123446899999


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhc
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD  215 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd  215 (304)
                      +.||+|++++|.. ..+.+ -.+.-+.++++..+|+++-|=-.+
T Consensus        81 ~~ADiIIlAVPs~-~i~~v-l~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 KGADILVFVIPHQ-FLEGI-CKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             hcCCEEEEECChH-HHHHH-HHHHHhhcCCCCEEEEEeCCcccC
Confidence            9999999999943 22222 244555678899999999885443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.82  E-value=0.00039  Score=65.02  Aligned_cols=108  Identities=17%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------------~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||.|.||..+|..|...|++|.++.|+.  .+.....|..              ...+. +....+|+|++|++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~   82 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKT   82 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecC
Confidence            689999999999999999999999999999864  2323333321              11122 346789999999985


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  231 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga  231 (304)
                      .. +...+ +.....+++++.++...-| +-.++.|.+.+...++.++
T Consensus        83 ~~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g  127 (313)
T PRK06249         83 TA-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG  127 (313)
T ss_pred             CC-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            43 22222 3444556788888887665 4456667777766666554

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=7.6e-05  Score=68.58  Aligned_cols=80  Identities=19%  Similarity=0.249  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+....              .++++..++||+|+.+++-    .++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~  213 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AEL  213 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence            4578999999999866 89999999998899999886521              3688899999999999973    357


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.   .|+|+++||+|-..
T Consensus       214 i~~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        214 VKGAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             cCHHH---cCCCCEEEEeecee
Confidence            77666   58999999998554

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=7.1e-05  Score=69.01  Aligned_cols=123  Identities=21%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++.+..++||+|+.++.-    .++
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGk----p~~  215 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGS----PLK  215 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----CCc
Confidence            3478999999999866 89999999998899999886421              3688999999999999973    257


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+.   .|+|+++||+|-..+          .+|++.   =||-.+.-        ...--.+||=-+|--.-+...+
T Consensus       216 i~~~~---vk~GavVIDvGin~~----------~~gkl~---GDVd~~~v--------~~~a~~iTPVPGGVGp~T~a~L  271 (288)
T PRK14171        216 LTAEY---FNPESIVIDVGINRI----------SGNKII---GDVDFENV--------KSKVKYITPVPGGIGPMTIAFL  271 (288)
T ss_pred             cCHHH---cCCCCEEEEeecccc----------CCCCeE---CCccHHHH--------HhhceEeCCCCCCcHHHHHHHH
Confidence            77665   589999999984432          134443   35432111        0012467897777755555444


Q ss_pred             HHHHHH
Q 021995          271 AAGVKD  276 (304)
Q Consensus       271 ~~~~~~  276 (304)
                      .+.+++
T Consensus       272 ~~N~v~  277 (288)
T PRK14171        272 LKNTVK  277 (288)
T ss_pred             HHHHHH
Confidence            444443

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.80  E-value=4.6e-05  Score=72.26  Aligned_cols=93  Identities=17%  Similarity=0.181  Sum_probs=65.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc---------------CceecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~---------------g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|+|||.|.+|..+|..|...| +|..|.+++...+...+.               .+....++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            58999999999999999999888 677787754322222211               12234577788899999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      .. .++..+ ++..+.++++..+|++.-|=-
T Consensus        87 s~-~~~~vl-~~i~~~l~~~~~vIsl~kGi~  115 (341)
T PRK12439         87 SH-GFRGVL-TELAKELRPWVPVVSLVKGLE  115 (341)
T ss_pred             HH-HHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence            32 333333 345556788888999988643

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.80  E-value=7.5e-05  Score=70.56  Aligned_cols=80  Identities=13%  Similarity=0.231  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++++.+++||+|+.++.-    .++
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGk----p~~  287 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQ----PNM  287 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCc
Confidence            4578999999999765 89999999999999999886421              3788999999999999973    357


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.   .|+|+++||+|-..
T Consensus       288 i~~d~---vK~GAvVIDVGIn~  306 (364)
T PLN02616        288 VRGSW---IKPGAVVIDVGINP  306 (364)
T ss_pred             CCHHH---cCCCCEEEeccccc
Confidence            77766   58999999999544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.80  E-value=5.3e-05  Score=70.74  Aligned_cols=91  Identities=14%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHHH-hc---Ccee-cCCHHhhcCcCCEEEEcCCCChhh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-ET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~~-~~---g~~~-~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ...++++|||.|.+|+..++.+.. ++. +|.+|+|++.+.+.+. +.   +... +.++++++.++|+|+.++|...  
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--  200 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--  200 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence            356799999999999999998863 564 5999999865443322 22   2222 4688999999999999998653  


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCc
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                       .++..    .+|+|+.+..+|.-.
T Consensus       201 -Pl~~~----~~~~g~hi~~iGs~~  220 (304)
T PRK07340        201 -PVYPE----AARAGRLVVAVGAFT  220 (304)
T ss_pred             -ceeCc----cCCCCCEEEecCCCC
Confidence             45543    369999999998543

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.80  E-value=5.2e-05  Score=72.49  Aligned_cols=98  Identities=12%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCC-------CeEEEEcCCCCC-----hhHHHhc--------------CceecCCHHhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKET--------------GAKFEEDLDTM  170 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G-------~~V~~~dr~~~~-----~~~~~~~--------------g~~~~~~l~el  170 (304)
                      .++|+|||.|+.|.++|..|...|       .+|..|.|+..-     .+...+.              ++...++++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            468999999999999999997655       789999876531     1111110              13345788899


Q ss_pred             cCcCCEEEEcCCCChhhhccccHHHHh--cCCCCCEEEEcCCCchhch
Q 021995          171 LPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMDT  216 (304)
Q Consensus       171 l~~aDvVi~~~p~~~~t~~~i~~~~l~--~mk~g~ilVn~~rg~~vd~  216 (304)
                      ++.+|+|++++|.. ..+.++ ++.-.  .++++.++|+++-|=-.++
T Consensus        91 v~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         91 VEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             HhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence            99999999999943 222222 23323  4566789999988755444

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.79  E-value=0.00014  Score=75.46  Aligned_cols=115  Identities=13%  Similarity=0.143  Sum_probs=81.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..+...|++|+.||+++...+...           +.             .+....+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            6899999999999999999999999999999764322110           00             123345664 4789


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      ||+|+=++|-+.+.+.-+-.++-+.++++++|...+  +.+....|.+.+.. .-+.+++--|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff  452 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFF  452 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecC
Confidence            999999999888888777777778889999885544  34555666666643 3333444433

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.79  E-value=8e-05  Score=70.04  Aligned_cols=129  Identities=17%  Similarity=0.257  Sum_probs=85.9

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....              .++++..++||+|+.+++-    .++
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGk----p~~  270 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGI----PNL  270 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence            4578999999999866 79999999998999999886421              3688899999999999973    357


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+.   +|+|+++||+|--.+.+...     ++|.  ...=||..++-.+        .--.+||=-+|--.-+...+
T Consensus       271 v~~d~---vk~GavVIDVGin~~~~~~~-----~~g~--klvGDVdfe~v~~--------~as~iTPVPGGVGpmTvamL  332 (345)
T PLN02897        271 VRGSW---LKPGAVVIDVGTTPVEDSSC-----EFGY--RLVGDVCYEEALG--------VASAITPVPGGVGPMTITML  332 (345)
T ss_pred             cCHHH---cCCCCEEEEccccccccccc-----cCCC--eeEecccHHHHHh--------hccccCCCCCchhHHHHHHH
Confidence            77665   58999999999544211100     0130  2344665333211        12357887777655544444


Q ss_pred             HHHHHH
Q 021995          271 AAGVKD  276 (304)
Q Consensus       271 ~~~~~~  276 (304)
                      ...+++
T Consensus       333 m~N~~~  338 (345)
T PLN02897        333 LCNTLD  338 (345)
T ss_pred             HHHHHH
Confidence            443333

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=9.6e-05  Score=68.11  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=65.5

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      +.++.||++.|||-+. +|+.++..|...    ++.|+.+....              .++++.+++||+|+.+++-.  
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p--  211 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVP--  211 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc--
Confidence            4578999999999866 899999999877    78998876421              36889999999999999732  


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                        +++..+.   +|+|+++||+|-..
T Consensus       212 --~~i~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        212 --LFIKEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             --CccCHHH---cCCCCEEEEecccc
Confidence              5777666   58999999999554

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.77  E-value=7.8e-05  Score=65.84  Aligned_cols=96  Identities=27%  Similarity=0.451  Sum_probs=67.9

Q ss_pred             CEEEEEeeChhhHHHHHHhcc--CCCe-EEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP--FNCN-LLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~--~G~~-V~~~dr~~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+|||||+|.||+.+.+.+..  ..++ +.+||++..+.. ..+..+....++++|++++.|+++=|.... .    +-+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-A----v~e   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-A----VRE   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-H----HHH
Confidence            379999999999999999984  2455 779999764433 333455555578999999999998877522 1    222


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHH
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQA  218 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~a  218 (304)
                      -..+.|+.|.=+|-+|-|.+.|+.-
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChHH
Confidence            2344567777677778888886654

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00011  Score=67.57  Aligned_cols=118  Identities=20%  Similarity=0.305  Sum_probs=83.9

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhcc--CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~--~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      +.++.||++.|||-+. +|+.++..|..  .++.|+.+...              ..++.+.+++||+|+.++.-.    
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp----  214 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVA----  214 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCc----
Confidence            4578999999999755 89999999987  78999988652              136889999999999999733    


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  268 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~  268 (304)
                      +++..+.   +|+|+++||+|...+          .+|++.   =||- .+-       .+. --.+||--+|--.=+..
T Consensus       215 ~~i~~~~---ik~GavVIDvGin~~----------~~gkl~---GDvd-~~v-------~~~-a~~iTPVPGGVGp~T~a  269 (284)
T PRK14193        215 HLVTADM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH-PDV-------WEV-AGAVSPNPGGVGPMTRA  269 (284)
T ss_pred             CccCHHH---cCCCCEEEEcccccc----------CCCcEE---eecC-HhH-------Hhh-CCEEeCCCCChhHHHHH
Confidence            5777666   589999999996553          234443   3654 221       111 13689988886555444


Q ss_pred             HHHH
Q 021995          269 RYAA  272 (304)
Q Consensus       269 ~~~~  272 (304)
                      .+..
T Consensus       270 ~L~~  273 (284)
T PRK14193        270 FLLT  273 (284)
T ss_pred             HHHH
Confidence            4333

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.74  E-value=0.00034  Score=62.67  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=70.6

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE-cCC-------CCChhHHH----hcC-------ceecCCHHhh-cC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEK----ETG-------AKFEEDLDTM-LP  172 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~-dr~-------~~~~~~~~----~~g-------~~~~~~l~el-l~  172 (304)
                      .++.|++|.|.|+|++|+.+++.|..+|++|+++ |.+       ....+...    +.|       .... +.+++ -.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~  105 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLEL  105 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceee
Confidence            3689999999999999999999999999998844 431       11222211    122       1112 22222 23


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +||+++-|.+.     +.++.+...+++ =.+++-.+.+++ . ....+.|.++.+.
T Consensus       106 ~~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~  154 (227)
T cd01076         106 DCDILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL  154 (227)
T ss_pred             cccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence            68999988853     467788888887 334444445555 4 6666888888776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=9.9e-05  Score=68.03  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~----~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      +.++.||++.|||-+. +|+.++..|..    .++.|+.+....              .++.+.+++||+|+.+++    
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG----  213 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG----  213 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----
Confidence            4578999999999866 89999999987    789998876422              368899999999999996    


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ..+++.++.+   |+|+++||+|-.
T Consensus       214 ~p~li~~~~v---k~GavVIDVGi~  235 (286)
T PRK14184        214 RPRFVTADMV---KPGAVVVDVGIN  235 (286)
T ss_pred             CCCcCCHHHc---CCCCEEEEeeee
Confidence            3467877766   999999999843

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.74  E-value=0.0001  Score=69.49  Aligned_cols=89  Identities=21%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-----hcCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-----~~g~--~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ..++++|||.|.+|+..++.+. ..++ +|.+|+|++.+.+.+.     ..+.  ..+++++++++++|+|++|+|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4679999999999999887764 4565 4889999875443322     2243  34678899999999999999865  


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                       ..++.    ..+|+|+.++.+|.-
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             23443    567999999999753

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.74  E-value=0.00011  Score=67.89  Aligned_cols=71  Identities=24%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hcC-------ceecCCHHhhcCcCCEEEEcCCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ETG-------AKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~g-------~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      .+.++++.|+|.|.+|++++..|...|+ +|+++||+..+.+... .++       +...+++.+.++++|+|+.++|..
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            5788999999999999999999999998 6999999864433222 211       112234556778899999999864

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.74  E-value=0.00051  Score=62.40  Aligned_cols=129  Identities=13%  Similarity=0.159  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEc----
Q 021995           73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHD----  147 (304)
Q Consensus        73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~d----  147 (304)
                      .++++--++..+..++++.                    +.++.|+||.|.|||++|+.+|+.|..+|++|+ +.|    
T Consensus        14 ~~aTg~Gv~~~~~~~~~~~--------------------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~   73 (254)
T cd05313          14 PEATGYGLVYFVEEMLKDR--------------------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGY   73 (254)
T ss_pred             CchhHHHHHHHHHHHHHhc--------------------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCce
Confidence            4556666666666665532                    346899999999999999999999999999988 434    


Q ss_pred             ---CCCCChhHH------H-hc------------CceecCCHHhh-cCcCCEEEEcCCCChhhhccccHHHHhcCC--CC
Q 021995          148 ---RVKMDPQLE------K-ET------------GAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KG  202 (304)
Q Consensus       148 ---r~~~~~~~~------~-~~------------g~~~~~~l~el-l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk--~g  202 (304)
                         +.....+..      + ..            +.+.. +.+++ -..||+++-|.     +.+.|+.+..+.++  +=
T Consensus        74 i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~a  147 (254)
T cd05313          74 VYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGC  147 (254)
T ss_pred             EECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCC
Confidence               222211111      0 11            12322 23333 34699998875     56788888888884  33


Q ss_pred             CEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          203 VLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       203 ~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .+++-.+.+++-+  +-.+.|.++.+.
T Consensus       148 k~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         148 KYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             EEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            4566666677643  455777777776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.73  E-value=0.00021  Score=66.50  Aligned_cols=116  Identities=15%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hcC-------------ceecCCHHhhcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ETG-------------AKFEEDLDTMLP  172 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  172 (304)
                      -++|||||.|.||+.+|..+...|++|..+|+++...+...           +.|             +....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            46999999999999999999887799999999743211111           111             11222333 688


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      +||+|+=++|-+.+.++-+-++.=+..+++++|=.-  -+.+.-.++.+++ ++.-+..++=-|
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASN--TSsl~it~ia~~~-~rper~iG~HFf  142 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASN--TSSLSITELAEAL-KRPERFIGLHFF  142 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeec--cCCCCHHHHHHHh-CCchhEEEEecc
Confidence            999999999988887776666776778899988433  3345566777777 444444555433

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.73  E-value=0.00038  Score=67.94  Aligned_cols=111  Identities=17%  Similarity=0.267  Sum_probs=71.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcC--------CCCChhHH------------------HhcCceecC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--------VKMDPQLE------------------KETGAKFEE  165 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr--------~~~~~~~~------------------~~~g~~~~~  165 (304)
                      +.+|.|+||.|.|+|++|+..|+.|..+|++|++++.        .....+..                  ...++... 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-  301 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-  301 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence            4579999999999999999999999999999987433        11111110                  01123332 


Q ss_pred             CHHhhc-CcCCEEEEcCCCChhhhccccHHHHhcCCC-CCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          166 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       166 ~l~ell-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~-g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.++++ ..||+++-|.     +.+.|+.+..+.++. ++.+|--+--.+...++. +.|.++.|.
T Consensus       302 ~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        302 EGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANMPSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCCCCCHHHH-HHHHHCCcE
Confidence            233432 4699998776     457888888888864 555555554445555554 445555544

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.73  E-value=0.00013  Score=66.49  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=67.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccC---CCeEE-EEcCCCCChhHHHhcCceecCCHHhh-cCcCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF---NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~---G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~el-l~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .+|||||||.||+.+++.+..-   ++++. ++++.+...+.... .+..+.+++++ ....|+|+=|.+..     .+-
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~~~-----av~   76 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAGQQ-----AIA   76 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCCHH-----HHH
Confidence            5899999999999999988642   36644 56665422222222 25567789997 58899999887632     222


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhc---hHHHHHHHHcC
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMD---TQAVVDACSSG  226 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd---~~aL~~aL~~g  226 (304)
                      +-..+-|+.|.-++=+|-|.+-|   .+.|.++.+++
T Consensus        77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            22334456777788888888887   44455555443

>PLN02477 glutamate dehydrogenase

Probab=97.72  E-value=0.0021  Score=62.32  Aligned_cols=110  Identities=17%  Similarity=0.284  Sum_probs=74.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHHHh----c-------CceecCCHHhhcC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKE----T-------GAKFEEDLDTMLP  172 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~~~----~-------g~~~~~~l~ell~  172 (304)
                      +.+|.|++|.|.|||++|+.+|+.|...|++|+ +.|.+       ....+...+    .       +.+..+.-+-+..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            347899999999999999999999999999988 44443       222222111    0       1122222222345


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .||+++-|.     ..+.|+++...+++ -.+++-.+.+++  +.+-.+.|.++.|.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcE
Confidence            799998776     34678888888775 456677777777  44456888888776

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.71  E-value=0.00039  Score=61.81  Aligned_cols=109  Identities=20%  Similarity=0.193  Sum_probs=69.7

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCCC----------CChhHHHhc-CceecC-----CHHhhc-CcC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKC  174 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~~----------~~~~~~~~~-g~~~~~-----~l~ell-~~a  174 (304)
                      .+|.|++|.|.|||++|+.+|+.|...|.+|+ +.|.+.          ...+..++. ++..+.     +-++++ .+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            36899999999999999999999999999755 556544          111111122 121111     112322 379


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      |+++-|.+.     +.++.+....++ =.+++-.+.+++-+  .-.+.|.+..+.
T Consensus        99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            999988864     477777777776 34455566666654  445666666655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.70  E-value=0.00014  Score=68.49  Aligned_cols=88  Identities=17%  Similarity=0.253  Sum_probs=65.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-h----cCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-E----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-~----~g~--~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|++.+.+.+. +    .+.  ..++++++.+++||+|+.++|..+ 
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~-  206 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET-  206 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence            4579999999999999999886 4674 5999999875444322 2    243  335788999999999999998643 


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                        .++..+.   +|+|..+..++
T Consensus       207 --p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       207 --PILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             --cEecHHH---cCCCcEEEeeC
Confidence              4555444   68998888776

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00015  Score=67.00  Aligned_cols=80  Identities=16%  Similarity=0.299  Sum_probs=64.6

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      +.++.||++.|||-+. +|+.++..|...    ++.|+.+....              .++.+.+++||+|+.+++-   
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGk---  214 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQ---  214 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence            4578999999999866 899999999866    68898886422              3688999999999999973   


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                       .+++..+.   .|+|+++||+|-..
T Consensus       215 -p~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        215 -PEFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             -cCccCHHH---cCCCCEEEEecCcc
Confidence             25676655   58999999998544

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=0.00014  Score=67.47  Aligned_cols=80  Identities=18%  Similarity=0.338  Sum_probs=65.0

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~----~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      +.++.||++.|||-+. +|+.++..|..    .|+.|..+....              .++++.+++||+|+.+++..  
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~--  217 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA--  217 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc--
Confidence            4578999999999865 89999999876    588888776522              36889999999999999633  


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                        +++..+.+   |+|+++||+|-..
T Consensus       218 --~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        218 --RFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             --CccCHHHc---CCCCEEEEeeccc
Confidence              67888876   9999999998443

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.67  E-value=0.00028  Score=73.13  Aligned_cols=115  Identities=14%  Similarity=0.046  Sum_probs=80.4

Q ss_pred             CEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLP  172 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~~~-----------~-------------~g~~~~~~l~ell~  172 (304)
                      ++|+|||.|.||..+|..+. ..|++|+.||+++...+...           +             ..+...++++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            58999999999999999887 57999999998753221110           0             0123445664 578


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      +||+|+=++|-+.+.+.-+-.++-+.++++++|...+  +.+....|.+.+.. .-+.+++--|
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hff  444 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYF  444 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecC
Confidence            9999999999888887777777778889998886444  34555666666643 3333455534

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06046 alanine dehydrogenase; Validated

Probab=97.67  E-value=0.00013  Score=68.67  Aligned_cols=87  Identities=28%  Similarity=0.420  Sum_probs=64.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhc-cCCCe-EEEEcCCCCChhHHHh-----cC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLK-PFNCN-LLYHDRVKMDPQLEKE-----TG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~-~~G~~-V~~~dr~~~~~~~~~~-----~g--~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      -+++||||+|.+|+..++.+. ..+.+ |.+|||++...+.+.+     .+  +..+++++++++ +|+|++|+|...  
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~--  205 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK--  205 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC--
Confidence            469999999999999998886 34655 7789998744333222     23  344678899887 999999998653  


Q ss_pred             hccccHHHHhcCCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       -++..+   .+|+|+.+..+|.
T Consensus       206 -P~~~~~---~l~~g~hV~~iGs  224 (326)
T PRK06046        206 -PVVKAE---WIKEGTHINAIGA  224 (326)
T ss_pred             -cEecHH---HcCCCCEEEecCC
Confidence             455554   3589999888874

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.67  E-value=0.00024  Score=65.00  Aligned_cols=107  Identities=17%  Similarity=0.206  Sum_probs=65.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHHhc--CceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~--g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+|||||+|.||+.+++.+... ++++. ++++...........  ++..+.+++++-.+.|+|+.|.|....     -+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-----~e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-----KE   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-----HH
Confidence            4899999999999999998765 56654 444432211111222  455667888885569999999985322     12


Q ss_pred             HHHhcCCCCCEEEEcCCCchhch---HHHHHHHHcCCce
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~---~aL~~aL~~g~i~  229 (304)
                      -....++.|.-++-.+-+.+.|.   +.|.++.+++...
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            33344556666665655554443   4455655555433

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.67  E-value=0.00017  Score=67.99  Aligned_cols=92  Identities=7%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .+.|++|.|||.|.||+.+++.|...|+ +|++.+|+....+    ++-... ...++..++|+|+.+...|.....++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~  245 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVR-EELSFQDPYDVIFFGSSESAYAFPHLS  245 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence            5889999999999999999999999996 5999999863211    110000 111556799999987433333334556


Q ss_pred             HHHHhcCCCCCEEEEcCCC
Q 021995          193 KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg  211 (304)
                      .+.++..++ .+|||.+=+
T Consensus       246 ~~~~~~~~~-r~~iDLAvP  263 (338)
T PRK00676        246 WESLADIPD-RIVFDFNVP  263 (338)
T ss_pred             HHHHhhccC-cEEEEecCC
Confidence            666654332 488888743

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.66  E-value=0.00015  Score=71.90  Aligned_cols=72  Identities=24%  Similarity=0.336  Sum_probs=52.6

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCceecCCHHhh--cCcCCEEEEcCCCC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFEEDLDTM--LPKCDIVVVNTPLT  184 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~~l~el--l~~aDvVi~~~p~~  184 (304)
                      +..+.+++++|+|.|.+|++++..|...|++|.+++|+..+.+.. ...+.... +++++  +.++|+|+.|+|..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g  401 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS  401 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence            346789999999999999999999999999999999875433322 22222211 22222  57899999999965

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.65  E-value=0.00023  Score=62.39  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      .+++|||- |.||+.++++++..|+.|.                          +++||+|++|+|... +     .+.+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~-~-----~~~i   48 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA-A-----LNYI   48 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH-H-----HHHH
Confidence            37999997 9999999999999999985                          368999999999542 2     2334


Q ss_pred             hcCCCCCEEEEcCCCch
Q 021995          197 AKMKKGVLIVNNARGAI  213 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~  213 (304)
                      +.+.  .+++|++.-+.
T Consensus        49 ~~~~--~~v~Dv~SvK~   63 (197)
T PRK06444         49 ESYD--NNFVEISSVKW   63 (197)
T ss_pred             HHhC--CeEEeccccCH
Confidence            3333  47899987443

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.65  E-value=0.00019  Score=66.49  Aligned_cols=136  Identities=16%  Similarity=0.186  Sum_probs=88.1

Q ss_pred             cccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      .+.++.||++.|||-+. +|+.++..|...    ++.|+.+....              .++++.+++||+|+.++.-  
T Consensus       155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGk--  218 (297)
T PRK14168        155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGV--  218 (297)
T ss_pred             hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCC--
Confidence            35678999999999755 899999999876    78898875421              3688899999999999863  


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHH
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID  265 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e  265 (304)
                        .+++..+.   +|+|+++||+|-..+.+.      ..+|+.. ..=||-..+-       .. .--.+||--+|--.-
T Consensus       219 --p~~i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe~v-------~~-~a~~iTPVPGGVGp~  278 (297)
T PRK14168        219 --PNLVKPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFDAV-------KE-IAGKITPVPGGVGPM  278 (297)
T ss_pred             --cCccCHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHHHH-------Hh-hccEecCCCCCchHH
Confidence              25677665   589999999996542211      0123200 2335432110       11 124589987777655


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021995          266 AQLRYAAGVKDMLDRYF  282 (304)
Q Consensus       266 ~~~~~~~~~~~~l~~~~  282 (304)
                      +...+...+++..++|+
T Consensus       279 T~a~L~~N~~~a~~~~~  295 (297)
T PRK14168        279 TIAMLMRNTLKSAKFHL  295 (297)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            55555554544444443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.62  E-value=0.00029  Score=73.08  Aligned_cols=115  Identities=10%  Similarity=0.016  Sum_probs=81.8

Q ss_pred             CEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLP  172 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~  172 (304)
                      ++|+|||.|.||..+|..+. ..|++|+.+|+++...+...           +.             .+....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999987 77999999998753222110           00             12334555 4578


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      +||+|+=++|-+.+.+.-+-+++=+.++++++|...+  +.+....|.+.+.. .-+.+++--|
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~ig~Hff  449 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNT--SSLPIGQIAAAAAR-PEQVIGLHYF  449 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHHhcCc-ccceEEEecC
Confidence            9999999999888887777777778889999986544  44566667776643 3333455544

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.62  E-value=0.00026  Score=73.65  Aligned_cols=115  Identities=13%  Similarity=0.081  Sum_probs=82.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..+...|++|+.+|+++...+...           +.             .+....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999988999999998764322110           00             123345564 5789


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      ||+|+=++|-+.+.+.-+-.++=+.++++++|...  .+.++..+|.+.+.. .-+.+++--|
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff  474 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYF  474 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEecc
Confidence            99999999988888777777777888999988533  344566677776643 3334555544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.62  E-value=0.00038  Score=72.24  Aligned_cols=104  Identities=14%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..+...|++|+.+|+++...+...           +.             .+....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999989999999998764322111           00             12333455 34789


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      ||+|+=++|-+.+.+.-+-+++=+.++++++|-..+  +.++..+|...++
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~  441 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALK  441 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcC
Confidence            999999999888877777677778889999985544  4455666766664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.62  E-value=0.0002  Score=67.53  Aligned_cols=88  Identities=17%  Similarity=0.293  Sum_probs=62.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHHh-----cCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~~-----~g~--~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ..++++|||.|.+|+..+..+.. .+ .+|.+|+|+..+.+.+.+     .++  ..++++++++.++|+|+.++|... 
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~-  209 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE-  209 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC-
Confidence            45799999999999998887763 55 469999998654443322     233  335788999999999999998643 


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                        .++..+.   +++|..+..++
T Consensus       210 --p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        210 --PILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             --cEecHHH---cCCCceEEeeC
Confidence              3554443   57777666644

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.61  E-value=0.00025  Score=65.75  Aligned_cols=80  Identities=23%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      +.++.||++.|||-+. +|+.++..|...    ++.|+.+....              .++++..++||+|+.++.-   
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGk---  214 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGV---  214 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence            4578999999999865 899999999765    78998875421              3688999999999998863   


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                       .+++..+.   +|+|+++||+|-..
T Consensus       215 -p~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        215 -PELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             -cCccCHHH---cCCCCEEEEccccc
Confidence             25777655   58999999999544

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.60  E-value=9e-05  Score=58.79  Aligned_cols=66  Identities=26%  Similarity=0.445  Sum_probs=52.3

Q ss_pred             EEEEEeeChhhHHHHHHhccC--CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~--G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      +|||||+|.+|+.....+...  +.++. ++|+++...+ ..+.++...+++++++++  +.|+|++++|..
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~   73 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPS   73 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCc
Confidence            799999999999999877654  56754 7788764333 345678888889999998  799999999954

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.60  E-value=0.00038  Score=65.44  Aligned_cols=117  Identities=18%  Similarity=0.277  Sum_probs=72.0

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhH-HH--h-----cC----ceecCCHHhhcCcCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EK--E-----TG----AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~-~~--~-----~g----~~~~~~l~ell~~aDvVi~~~  181 (304)
                      +..++|+|||.|.+|..++..+...| .++..+|.+....+. +.  .     .+    +....+++ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45679999999999999999888777 689999986532211 11  0     11    12234666 679999999998


Q ss_pred             --CCChh-hh--------cccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH--cCCceEEE
Q 021995          182 --PLTEK-TR--------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS  232 (304)
Q Consensus       182 --p~~~~-t~--------~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~  232 (304)
                        |..+. ++        .++.  .+.+....|.+++|+++...-+-...+.+.-.  ..++.|.+
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence              43330 00        1110  12233346888999997655444444544322  35566555

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.59  E-value=0.00067  Score=64.64  Aligned_cols=144  Identities=18%  Similarity=0.278  Sum_probs=92.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-------------------HhcC-ceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-------------------KETG-AKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-------------------~~~g-~~~~~~l~ell~~aDvV  177 (304)
                      .+|||||+|-||-.+|-.+...|++|+++|.++..-+..                   .+.| .+...+.++ ++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence            799999999999999999999999999999875322111                   1112 233344544 4599999


Q ss_pred             EEcCCCChhhh-c------cc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC--CceEEEeec---CCCCCCCC
Q 021995          178 VVNTPLTEKTR-G------MF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK  243 (304)
Q Consensus       178 i~~~p~~~~t~-~------~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g--~i~ga~lDV---~~~ep~~~  243 (304)
                      ++|+|. |-+. +      +.  .+..-+.||+|.++|==|.-.+=.++.++.-|.+.  .+. ..-|.   |.+|-.-+
T Consensus        89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            999983 2111 1      11  23455679999999998887777788887776653  233 22342   44554333


Q ss_pred             CCCc---cCCCCeEEccCCCcCCHHHHHH
Q 021995          244 DHPW---RYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       244 ~~~l---~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      .+.+   .+.|.|     +||.|+.+.+.
T Consensus       167 G~~~~el~~~~kV-----IgG~tp~~~e~  190 (436)
T COG0677         167 GNVLKELVNNPKV-----IGGVTPKCAEL  190 (436)
T ss_pred             CchhhhhhcCCce-----eecCCHHHHHH
Confidence            3333   344555     56667665443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.58  E-value=0.00017  Score=63.30  Aligned_cols=96  Identities=23%  Similarity=0.282  Sum_probs=68.8

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC---CCChhH----HHhcC-------------------cee--
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDPQL----EKETG-------------------AKF--  163 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~---~~~~~~----~~~~g-------------------~~~--  163 (304)
                      ..|..++|+|+|+|.+|..+|+.|...|. +++.+|++   ......    ..+.|                   +..  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            36889999999999999999999999999 59999987   110000    00111                   111  


Q ss_pred             ----cCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          164 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       164 ----~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                          .+++++++.++|+|+.| ..+.+++..+.......++...++...+
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g  145 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG  145 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence                02345678899999988 6788888888888888888766666433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.57  E-value=0.001  Score=65.00  Aligned_cols=110  Identities=16%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEE--------EcCCCCChhHH---H---------------hc-Cceec
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE  164 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~--------~dr~~~~~~~~---~---------------~~-g~~~~  164 (304)
                      +.+|.|+||.|-|+|++|+.+|+.|..+|++|++        ||++....+..   .               .+ +.+..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            4478999999999999999999999999999998        78765443321   0               11 33333


Q ss_pred             CCHHhhc-CcCCEEEEcCCCChhhhccccHHHHhcCC-CCC-EEEEcCCCchhchHHHHHHHHcCCce
Q 021995          165 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       165 ~~l~ell-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk-~g~-ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       +.++++ ..||+++-|.     +.+.|+.+..+.+. .++ +++-.+.+ ++..+ -.+.|.++.|.
T Consensus       303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~e-A~~iL~~rGI~  362 (445)
T PRK14030        303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAE-AIDKFIAAKQL  362 (445)
T ss_pred             -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHH-HHHHHHHCCCE
Confidence             223333 4599988776     56788888777773 334 45555556 55544 34667777666

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.55  E-value=0.00026  Score=56.76  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             EEEEEe-eChhhHHHHHHhccC-CCeEEEE-cCCCCChhHHH-hcC-ce-e-cCCH--Hhh-cCcCCEEEEcCCCChhhh
Q 021995          119 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEK-ETG-AK-F-EEDL--DTM-LPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       119 ~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~-dr~~~~~~~~~-~~g-~~-~-~~~l--~el-l~~aDvVi~~~p~~~~t~  188 (304)
                      ++||+| .|.+|+.+++.+... ++++.++ +++....+... ..+ .. . ..+.  +++ ..++|+|++|+|......
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999988874 7887655 44321111122 111 10 0 0111  111 258999999999664332


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                       .+ ......+++|.++|+++
T Consensus        81 -~~-~~~~~~~~~g~~viD~s   99 (122)
T smart00859       81 -IA-PLLPKAAEAGVKVIDLS   99 (122)
T ss_pred             -HH-HHHHhhhcCCCEEEECC
Confidence             22 13345679999999997

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.55  E-value=0.00022  Score=68.44  Aligned_cols=88  Identities=22%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcC----------ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETG----------AKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g----------~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ++|.|||+|.+|+.+|..|.+.| .+|++.||+..+........          +...+.+.+++++.|+|+.++|..- 
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~-   80 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV-   80 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence            68999999999999999998888 89999999865554443332          1223467789999999999998542 


Q ss_pred             hhccccHHHH-hcCCCCCEEEEcCCC
Q 021995          187 TRGMFDKDRI-AKMKKGVLIVNNARG  211 (304)
Q Consensus       187 t~~~i~~~~l-~~mk~g~ilVn~~rg  211 (304)
                           +...+ +.++.|.-.++++-.
T Consensus        81 -----~~~i~ka~i~~gv~yvDts~~  101 (389)
T COG1748          81 -----DLTILKACIKTGVDYVDTSYY  101 (389)
T ss_pred             -----hHHHHHHHHHhCCCEEEcccC
Confidence                 23444 334666667777643

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.55  E-value=0.0003  Score=66.02  Aligned_cols=106  Identities=15%  Similarity=0.192  Sum_probs=69.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+|||||+|+||+.+++.+... +++++ ++++++. .......++....+.++++.+.|+|++|+|....     -...
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~   77 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ   77 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence            5899999999999999988754 88976 5687641 1122233444445777888999999999985432     1445


Q ss_pred             HhcCCCCCEEEEcCCCch--hc-hHHHHHHHHc-CCce
Q 021995          196 IAKMKKGVLIVNNARGAI--MD-TQAVVDACSS-GHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~--vd-~~aL~~aL~~-g~i~  229 (304)
                      ...|+.|.-+|+..-...  -+ .+.|.++-++ |+..
T Consensus        78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            556777777888753211  12 2334445553 5554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.53  E-value=0.00028  Score=66.20  Aligned_cols=89  Identities=19%  Similarity=0.320  Sum_probs=66.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      .-++++|||.|..|+..++.+.. +.. +|.+|+|++.+.+.+.    +.+  +..+++.++++++||+|+++++.+   
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---  203 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---  203 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence            35699999999999999887753 333 5999999876544322    123  334678999999999999998754   


Q ss_pred             hccccHHHHhcCCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .-+++.+   .+|+|+.++.+|.
T Consensus       204 ~P~~~~~---~l~~G~hi~~iGs  223 (315)
T PRK06823        204 EPLLQAE---DIQPGTHITAVGA  223 (315)
T ss_pred             CceeCHH---HcCCCcEEEecCC
Confidence            3466555   4689999999984

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.49  E-value=0.00036  Score=65.22  Aligned_cols=116  Identities=22%  Similarity=0.238  Sum_probs=73.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHh---------c--CceecCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~---------~--g~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||.|.||..+|..+...|. +|+.+|....... ...+         .  .+....++++ +++||+|+++.+..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            489999999999999999887665 8999998543222 1110         0  1223356766 78999999998732


Q ss_pred             hh-----------hhccccH--HHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEEE--ee
Q 021995          185 EK-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD  234 (304)
Q Consensus       185 ~~-----------t~~~i~~--~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga~--lD  234 (304)
                      ..           +..++..  +.+....+++++|+++..-=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11           1112210  12233357899999987665555555555  5555666665  56

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.48  E-value=0.00015  Score=60.05  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=71.0

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec--------------CCHHhhcCcCCEEEEcCCCCh
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--------------~~l~ell~~aDvVi~~~p~~~  185 (304)
                      |+|+|.|.||..+|.+|+..|++|..+.|.. ..+..++.|....              .+..+....+|+|++|+...+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence            6899999999999999988999999999865 4444444443211              111245678999999997543


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  232 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~  232 (304)
                       +...+ ......+.+++.++-.-.| +-.++.+.+.+...++.++.
T Consensus        80 -~~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   80 -LEQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             -HHHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             -hHHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence             33333 2344556677677766555 44456666666555555433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.48  E-value=0.0008  Score=60.90  Aligned_cols=110  Identities=22%  Similarity=0.289  Sum_probs=71.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE--------cCCCCChhHHH----hcCc--eecC----------CHH-
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETGA--KFEE----------DLD-  168 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~--------dr~~~~~~~~~----~~g~--~~~~----------~l~-  168 (304)
                      ++.|+++.|-|+|++|+.+|+.|...|++|++.        |+...+.+...    +.+.  ..+.          +-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999998765        55433222222    1222  1111          121 


Q ss_pred             hhc-CcCCEEEEcCCCChhhhccccHHHHh-cCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          169 TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       169 ell-~~aDvVi~~~p~~~~t~~~i~~~~l~-~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +++ ..||+++.|.     ..+.|+.+... .+++++.+|--+--..+..++.. .|.++.|.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence            444 5799999885     34678888888 77777665555544444455544 78877776

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.47  E-value=0.00056  Score=62.33  Aligned_cols=92  Identities=20%  Similarity=0.277  Sum_probs=59.1

Q ss_pred             CEEEEEee-ChhhHHHHHHhcc-CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      .+|+|+|+ |.||+.+++.+.. -++++. ++|+++.........++..+.+++++++.+|+|+.++|....     .+-
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~-----~~~   76 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEAT-----LEN   76 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHH-----HHH
Confidence            48999998 9999999998875 478865 577765332222334555567899999899999977763221     122


Q ss_pred             HHhcCCCCCEEEEcCCCchh
Q 021995          195 RIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~v  214 (304)
                      ....++.|.-+|-...|-..
T Consensus        77 ~~~al~~G~~vvigttG~s~   96 (257)
T PRK00048         77 LEFALEHGKPLVIGTTGFTE   96 (257)
T ss_pred             HHHHHHcCCCEEEECCCCCH
Confidence            33334555555533344333

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.45  E-value=0.0009  Score=65.47  Aligned_cols=110  Identities=17%  Similarity=0.299  Sum_probs=72.3

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE-cCC-------CCChhHHHh-----------c----CceecCCHH
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE-----------T----GAKFEEDLD  168 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~-dr~-------~~~~~~~~~-----------~----g~~~~~~l~  168 (304)
                      +.+|.|+||.|.|||++|+.+|+.|..+|++|+++ |.+       ....+...+           +    +.+.. +.+
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~  305 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG  305 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence            34689999999999999999999999999998877 522       112221110           0    11222 333


Q ss_pred             hhcC-cCCEEEEcCCCChhhhccccHHHHhcCC-CC-CEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          169 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KG-VLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       169 ell~-~aDvVi~~~p~~~~t~~~i~~~~l~~mk-~g-~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +++. +||+++-|..     .+.|+.+....++ ++ .+++-.+.+++  +.+-.+.|.++.|.
T Consensus       306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~  362 (445)
T PRK09414        306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL  362 (445)
T ss_pred             cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence            4443 6999998875     3566677666663 23 45666667776  45566777887776

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.42  E-value=0.00034  Score=63.80  Aligned_cols=115  Identities=16%  Similarity=0.182  Sum_probs=73.7

Q ss_pred             EEEEee-ChhhHHHHHHhccCC----CeEEEEcCCCCChhHHH-h----------cCceecCCHHhhcCcCCEEEEcCCC
Q 021995          120 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEK-E----------TGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       120 vgIIG~-G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~~~~-~----------~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      |+|||. |.+|..++..+...|    .++..||.+....+... +          ..+...+++++.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999987767    78999998764322111 0          1223345667889999999996522


Q ss_pred             --Ch---------hhhccccHH---HHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEEE-eec
Q 021995          184 --TE---------KTRGMFDKD---RIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS-GDV  235 (304)
Q Consensus       184 --~~---------~t~~~i~~~---~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga~-lDV  235 (304)
                        .+         .+..++ .+   .+....+++++||.+..-=+-...+.+.  +...++.|.+ +|.
T Consensus        81 ~~~~g~~r~~~~~~n~~i~-~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~  148 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIV-KEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP  148 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence              11         111111 22   2333458999999974443444445444  4667788888 775

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.41  E-value=0.0002  Score=67.12  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=56.1

Q ss_pred             CEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      ++++|||.|..|+..++.+.. ++. +|.+|+|++...+.+.    .++  +..+++.++++++||+|+.++|.+..+ -
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            589999999999999987753 555 5999999864433222    123  345688999999999999999866422 4


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCch
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      +++.+   .+++|+.++.+|....
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SST
T ss_pred             cccHH---HcCCCcEEEEecCCCC
Confidence            55544   5789999999986543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.40  E-value=0.00053  Score=63.94  Aligned_cols=89  Identities=11%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHH-Hh----cC--ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~-~~----~g--~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .-+++||||.|..|+..++.+.. +.. +|.+|+|++.+.+.+ ++    .+  +..++++++++.+||+|+.++|.+  
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence            35799999999999998887764 444 499999987544332 22    24  345678999999999999998854  


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       .-++..+   .+|||+.+.-+|.
T Consensus       194 -~P~~~~~---~l~pg~hV~aiGs  213 (301)
T PRK06407        194 -TPIFNRK---YLGDEYHVNLAGS  213 (301)
T ss_pred             -CcEecHH---HcCCCceEEecCC
Confidence             3566555   4578887777764

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.39  E-value=0.00052  Score=63.39  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHH-HhcC----ceec---CCHHhhcCcCCEEEEcCCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG----AKFE---EDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~-~~~g----~~~~---~~l~ell~~aDvVi~~~p~~  184 (304)
                      .+.|+++.|||.|.+|++++..|...|+ +|++++|+..+.+.. ...+    +...   +++.+.+.++|+|+.++|..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            4678999999999999999999999998 599999986433322 2221    1112   22345667899999999864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.38  E-value=0.00041  Score=60.96  Aligned_cols=91  Identities=14%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-hHHHhcC-ceec-CC-HHhhcCcCCEEEEcCCCChhhh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETG-AKFE-ED-LDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~~~~g-~~~~-~~-l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .+|.|++|.|||.|.+|...++.|...|++|+++++...+. ......+ +... .. .++.+..+|+|+.++...+.+ 
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN-   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN-   84 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH-
Confidence            47999999999999999999999999999999998754221 1111112 2211 11 134578899988887654332 


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                          .......+.+ .++|++
T Consensus        85 ----~~i~~~a~~~-~lvn~~  100 (202)
T PRK06718         85 ----EQVKEDLPEN-ALFNVI  100 (202)
T ss_pred             ----HHHHHHHHhC-CcEEEC
Confidence                2222223333 467774

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.36  E-value=0.0035  Score=61.32  Aligned_cols=111  Identities=20%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHH--------------Hhc-----Cceec
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE--------------KET-----GAKFE  164 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~--------------~~~-----g~~~~  164 (304)
                      +.+|.|+||.|-|+|++|+.+|++|..+|++|+ +.|.+       ..+.+..              ..+     ++++.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            457899999999999999999999999999988 44544       1111111              000     22332


Q ss_pred             CCHHhh-cCcCCEEEEcCCCChhhhccccHHHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          165 EDLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       165 ~~l~el-l~~aDvVi~~~p~~~~t~~~i~~~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      + -+++ --.||+++-|.     +.+.|+.+..+.+ +.++.+|--+-...... +-.+.|.++.|.
T Consensus       312 ~-~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~  371 (454)
T PTZ00079        312 P-GKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVI  371 (454)
T ss_pred             C-CcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcE
Confidence            2 2222 24699998776     5577877777765 55666665554444444 344666666665

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.36  E-value=0.00055  Score=65.85  Aligned_cols=91  Identities=18%  Similarity=0.235  Sum_probs=66.2

Q ss_pred             CCEEEEEeeChhhHHHHHHhcc-C-CC-eEEEEcCCCCChhHHH-----hc-C---ceecCCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKP-F-NC-NLLYHDRVKMDPQLEK-----ET-G---AKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~-~-G~-~V~~~dr~~~~~~~~~-----~~-g---~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      -++++|||.|..|+..++.+.. + .. +|.+|+|++.+.+.+.     .+ +   +..+++.++++++||+|+.|++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            4699999999999999988765 4 23 6999999875443221     11 2   445688999999999999998754


Q ss_pred             h---hhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 E---KTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~---~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .   .+.-++..+   .+|+|+.++.++.
T Consensus       235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~  260 (379)
T PRK06199        235 TGDPSTYPYVKRE---WVKPGAFLLMPAA  260 (379)
T ss_pred             CCCCCcCcEecHH---HcCCCcEEecCCc
Confidence            3   233566555   4589988877765

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.30  E-value=0.00092  Score=64.14  Aligned_cols=96  Identities=22%  Similarity=0.443  Sum_probs=68.7

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC------------------Ch-hHHHhcCceecCCHHhhc-
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML-  171 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~------------------~~-~~~~~~g~~~~~~l~ell-  171 (304)
                      +.+|.|+||.|-|+|++|+.+|+.|...|.+|++++-+..                  .. ......+.++... ++++ 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc
Confidence            3358999999999999999999999988999988875543                  11 1111224455533 4444 


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v  214 (304)
                      ..||+++-|.     +.+.|+.+...+++-. +++-.+.+++-
T Consensus       281 ~~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t  317 (411)
T COG0334         281 VDCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT  317 (411)
T ss_pred             ccCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC
Confidence            4699987665     5678888888888865 67777777754

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.27  E-value=0.00081  Score=52.85  Aligned_cols=79  Identities=23%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             hhHHHHHHhccCCCeEEEEcCCCCChhHHHh----cCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995          128 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  203 (304)
Q Consensus       128 IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~  203 (304)
                      -+..+++.|+..|++|.+|||.-. ......    .++...+++++.++.+|+|+++++.. +...+--.+....|+++.
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVD-EEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSH-HHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSE
T ss_pred             HHHHHHHHHHHCCCEEEEECCccC-hHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCC
Confidence            456899999999999999999643 233333    46777789999999999999999854 333332345567788899


Q ss_pred             EEEEc
Q 021995          204 LIVNN  208 (304)
Q Consensus       204 ilVn~  208 (304)
                      ++||+
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00085  Score=63.22  Aligned_cols=88  Identities=22%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             CCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      -++++|||.|..++.-++.++ -++. +|.+|+|++...+.+.     +.+  +...++.+++++.||+|+.++|.++  
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence            458999999999999999886 4565 4999999875544333     222  3567899999999999999999765  


Q ss_pred             hccccHHHHhcCCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       -++..+.   +++|..+..+|.
T Consensus       208 -Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 -PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             -CeecHhh---cCCCcEEEecCC
Confidence             4666555   579999988884

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.27  E-value=0.00072  Score=59.59  Aligned_cols=92  Identities=20%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-hHHHhc-Cceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~~~~-g~~~~--~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .+|.|++|.|||.|.+|..-++.|..+|++|+++++...+. ....+. .+...  +--.+.+.++|+|+.+....+   
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~---   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE---   81 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence            36899999999999999999999999999999999865321 111122 22211  111345788999887765332   


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                        +|.......+.-.++||+.
T Consensus        82 --ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        82 --LNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             --HHHHHHHHHHHcCCEEEEC
Confidence              2445555566667778864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.27  E-value=0.00051  Score=55.18  Aligned_cols=86  Identities=22%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             EEEEEe-eChhhHHHHHHhcc-CCCeEE-EEcCCC-CChhHHHhcC----c---eecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          119 TVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVK-MDPQLEKETG----A---KFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       119 ~vgIIG-~G~IG~~lA~~l~~-~G~~V~-~~dr~~-~~~~~~~~~g----~---~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      +|+||| .|.+|+.+.+.|.. ..+++. +++++. .........+    .   ...+...+.+.++|+|++|+|.... 
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~-   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS-   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence            699999 99999999999975 456644 455544 1111221111    1   1111122445999999999994422 


Q ss_pred             hccccHHHHhc-CCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAK-MKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~-mk~g~ilVn~~r  210 (304)
                           .+..+. +++|..+||.+.
T Consensus        80 -----~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   80 -----KELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             -----HHHHHHHHHTTSEEEESSS
T ss_pred             -----HHHHHHHhhCCcEEEeCCH
Confidence                 222222 578999999974

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.27  E-value=0.00077  Score=64.03  Aligned_cols=90  Identities=13%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             CCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-h---cC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-E---TG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-~---~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      -++++|||.|..|+..++.+. -+.. +|.+|+|++.+.+.+. +   .+  +..++++++++++||+|++++|.+. ..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence            468999999999988877654 3444 5999999875443222 1   12  3446789999999999999997432 12


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      -++..+   .+|+|+.+.-+|.
T Consensus       208 Pvl~~~---~lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDD---MVEPGMHINAVGG  226 (346)
T ss_pred             ceecHH---HcCCCcEEEecCC
Confidence            345544   4689998877763

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.26  E-value=0.0019  Score=63.62  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=74.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-----hHHHhcCceec--CCHHhhcCcCCEEEEcCCCChh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-----~~~~~~g~~~~--~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .+.+++|+|+|+|..|.++|+.|+..|++|.++|.+....     ......|+...  ....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            4678999999999999999999999999999999764311     12344465432  2234556789999887 43322


Q ss_pred             hhc-----------cccH-HHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          187 TRG-----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       187 t~~-----------~i~~-~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      +..           ++.+ +.+.+. +...+-|--+.|+.-...-+...|.....
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~  144 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY  144 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            211           1211 222222 33355666667888888888888875443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.26  E-value=0.0013  Score=53.11  Aligned_cols=103  Identities=21%  Similarity=0.291  Sum_probs=61.7

Q ss_pred             EEEEEee-ChhhHHHHHHhcc-CCCeE-EEEcCCCCCh---hHH-----HhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          119 TVGTVGC-GRIGKLLLQRLKP-FNCNL-LYHDRVKMDP---QLE-----KETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~-~G~~V-~~~dr~~~~~---~~~-----~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      +|+|+|+ |+||+.+++.+.. -|+++ .++++.+.+.   +..     ...++...+++++++.++|+++-..  +++.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~   79 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA   79 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence            7999999 9999999999986 68885 4667755111   110     1335556689999999999998766  2222


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      -.   ...-..++.+.-+|-...|-.-++.+.++.+.+.
T Consensus        80 ~~---~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~  115 (124)
T PF01113_consen   80 VY---DNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK  115 (124)
T ss_dssp             HH---HHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred             hH---HHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence            11   1111223456777777777755554555554443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.22  E-value=0.0016  Score=60.43  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~  150 (304)
                      .+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            56789999999999999999999999997 99999975

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.21  E-value=0.0018  Score=60.93  Aligned_cols=91  Identities=22%  Similarity=0.272  Sum_probs=68.1

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhcC---cCCEEEEcCCCCh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE  185 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~---~aDvVi~~~p~~~  185 (304)
                      ..|++|.|+|.|.+|...++.++..|+ +|++.++++...+.++++|+..+     .++.++..   ..|+++-++....
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~  247 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS  247 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence            368999999999999999999999999 58888887777778888886432     12333332   2789888875321


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .     -...++.++++..+|.++.
T Consensus       248 ~-----~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 S-----INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H-----HHHHHHHhhcCCEEEEEcc
Confidence            1     1466788899999999875

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=97.15  E-value=0.0029  Score=53.38  Aligned_cols=94  Identities=17%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             CCCEEEEEee--ChhhHHHHHHhccCCCeEEEEcCCC--CCh--hHH-------HhcC--ceecCCHHhhcCcCCEEEEc
Q 021995          116 EGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVK--MDP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~--G~IG~~lA~~l~~~G~~V~~~dr~~--~~~--~~~-------~~~g--~~~~~~l~ell~~aDvVi~~  180 (304)
                      .|++|++||=  +++.++++..+..||+++.++.|..  -+.  +..       .+.|  +...+++++.++++|+|...
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            4789999993  8999999999999999999998865  222  111       2223  34568999999999999876


Q ss_pred             CCC----Chh-------hhccccHHHHhcCCCCCEEEEcC
Q 021995          181 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       181 ~p~----~~~-------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .-.    .+.       ....++++.++.+|++++|..+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            543    111       11457888999899999888775

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.15  E-value=0.0014  Score=63.74  Aligned_cols=111  Identities=13%  Similarity=0.094  Sum_probs=67.3

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh--------
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR--------  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~--------  188 (304)
                      .++|.|||+|.+|.++|+.|+..|++|+++|++...........-......+....++|+++.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            468999999999999999999999999999986532211100000111233344578999888765433211        


Q ss_pred             --ccccHHHH--hc--C-CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          189 --GMFDKDRI--AK--M-KKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       189 --~~i~~~~l--~~--m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                        .++.+..+  ..  + +...+=|--+.|+.-...-|...|+...
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g  128 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG  128 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence              12222222  21  1 2224555556788877777777787543

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.14  E-value=0.0014  Score=52.39  Aligned_cols=100  Identities=20%  Similarity=0.290  Sum_probs=66.3

Q ss_pred             CEEEEEe----eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG----~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      |+|+|||    -+..|..+.+.|+..|++|+.+++....     -.|...+.+++|.-...|++++++|.. .+..++  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-----i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v--   72 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-----ILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIV--   72 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-----ETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHH--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-----ECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHH--
Confidence            5899999    6889999999999999999999986521     235666788988558899999999843 222333  


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.+..+.-+.+++..+    ..++++.+.+++..+.
T Consensus        73 ~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   73 DEAAALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             HHHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             HHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            2233346678888887    6777888888887776

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=97.13  E-value=0.013  Score=54.75  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=84.0

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .+...+++|.|.-+....++  .+|+=++.+.+++                    | .+.|.+|+++|- +++.++++..
T Consensus       115 ~a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~~--------------------g-~l~gl~i~~vGd~~~v~~Sl~~~  171 (304)
T PRK00779        115 LAEYSTVPVINGLTDLSHPC--QILADLLTIYEHR--------------------G-SLKGLKVAWVGDGNNVANSLLLA  171 (304)
T ss_pred             HHHhCCCCEEeCCCCCCChH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEEeCCCccHHHHHHH
Confidence            45667899999865433332  2344444444321                    1 378999999997 7899999999


Q ss_pred             hccCCCeEEEEcCCCC-Ch-hH----HHhcC--ceecCCHHhhcCcCCEEEEcC----CCCh---h-----hhccccHHH
Q 021995          136 LKPFNCNLLYHDRVKM-DP-QL----EKETG--AKFEEDLDTMLPKCDIVVVNT----PLTE---K-----TRGMFDKDR  195 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~-~~----~~~~g--~~~~~~l~ell~~aDvVi~~~----p~~~---~-----t~~~i~~~~  195 (304)
                      +..+|++|....|... .. +.    +++.|  +...+++++.++++|+|....    ....   +     -..-++++.
T Consensus       172 l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~  251 (304)
T PRK00779        172 AALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEEL  251 (304)
T ss_pred             HHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHH
Confidence            9999999999987542 21 22    23345  345679999999999998752    1100   0     122356667


Q ss_pred             HhcCCCCCEEEEc
Q 021995          196 IAKMKKGVLIVNN  208 (304)
Q Consensus       196 l~~mk~g~ilVn~  208 (304)
                      ++.+|++++|..+
T Consensus       252 l~~~~~~~ivmHp  264 (304)
T PRK00779        252 MALAKPDAIFMHC  264 (304)
T ss_pred             HHhcCCCeEEecC
Confidence            7777777666554

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.12  E-value=0.0015  Score=61.69  Aligned_cols=90  Identities=13%  Similarity=0.233  Sum_probs=64.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC---CCChhHHHhcCceecC----CHHh--hcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEE----DLDT--MLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~---~~~~~~~~~~g~~~~~----~l~e--ll~~aDvVi~~~p~~~~  186 (304)
                      .|++|.|+|.|.+|...++.++..|++|++++++   +.+.+.++++|+....    ++.+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            6889999999999999999999999999999873   4445566677765431    1111  2245788888876321 


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                         . -.+.++.|+++..++.++.
T Consensus       251 ---~-~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---L-AFEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---H-HHHHHHHccCCcEEEEEec
Confidence               1 2466788888888887763

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.11  E-value=0.011  Score=56.07  Aligned_cols=131  Identities=16%  Similarity=0.175  Sum_probs=84.6

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++..+|+|.|.-+....++  .+|+=++.+.+.                    .+..+.|++|++||-+  ++.++++.
T Consensus       118 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~--------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~  175 (334)
T PRK01713        118 LAEYAGVPVFNGLTDEFHPT--QMLADVLTMIEN--------------------CDKPLSEISYVYIGDARNNMGNSLLL  175 (334)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH--------------------cCCCcCCcEEEEECCCccCHHHHHHH
Confidence            45667899999855433221  234444444331                    1224789999999986  68898999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCcCCEEEEcC----CCC-h---h-----hhcc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVNT----PLT-E---K-----TRGM  190 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVi~~~----p~~-~---~-----t~~~  190 (304)
                      .+..+|++|.++.|... +.+        .++..|  +...+++++.++++|+|..-.    ... +   +     ....
T Consensus       176 ~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~  255 (334)
T PRK01713        176 IGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQ  255 (334)
T ss_pred             HHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCc
Confidence            99999999999987542 221        112235  345689999999999998742    100 0   0     0123


Q ss_pred             ccHHHHhcC-CCCCEEEEcC
Q 021995          191 FDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~m-k~g~ilVn~~  209 (304)
                      ++++.++.. |++++|..+.
T Consensus       256 v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        256 VTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             CCHHHHhccCCCCCEEECCC
Confidence            677777775 6888887765

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.11  E-value=0.0027  Score=60.71  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=78.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh----------------c---C-ceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------T---G-AKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----------------~---g-~~~~~~l~ell~~aDvV  177 (304)
                      ++|.|+|.|-+|-..+..|..+|++|+++|..+.+-+...+                .   | .....+.++.++.+|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            58999999999999999999999999999986533222111                0   1 34456788899999999


Q ss_pred             EEcCCCChhhhcccc--------HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          178 VVNTPLTEKTRGMFD--------KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       178 i~~~p~~~~t~~~i~--------~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      ++++|..+.-.+-+|        ++..+.++..+++|+=|.-++=-.+.+.+-+....
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~  138 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN  138 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence            999986554344433        34556677779999998866655555555444433

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=97.10  E-value=0.017  Score=54.05  Aligned_cols=129  Identities=16%  Similarity=0.236  Sum_probs=84.4

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++..+++|.|.-+....++  .+|+=++.+.+++                    | .+.|.+|+++|- +++.++++..
T Consensus       111 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~--------------------g-~l~g~~v~~vGd~~~v~~Sl~~~  167 (304)
T TIGR00658       111 LAKYASVPVINGLTDLFHPC--QALADLLTIIEHF--------------------G-KLKGVKVVYVGDGNNVCNSLMLA  167 (304)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEeCCCchHHHHHHH
Confidence            45677899999865433332  2344444444321                    1 378999999996 7899999999


Q ss_pred             hccCCCeEEEEcCCCCCh-h-H-------HHhcC--ceecCCHHhhcCcCCEEEEcC--CCCh----------hhhcccc
Q 021995          136 LKPFNCNLLYHDRVKMDP-Q-L-------EKETG--AKFEEDLDTMLPKCDIVVVNT--PLTE----------KTRGMFD  192 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~~~-~-~-------~~~~g--~~~~~~l~ell~~aDvVi~~~--p~~~----------~t~~~i~  192 (304)
                      +..+|++|.+..|..... + .       +.+.|  +...+++++.++++|+|..-.  ....          .....++
T Consensus       168 l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~  247 (304)
T TIGR00658       168 GAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVN  247 (304)
T ss_pred             HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCC
Confidence            999999999998754221 1 1       22334  345679999999999998743  1000          0122467


Q ss_pred             HHHHhcCCCCCEEEEc
Q 021995          193 KDRIAKMKKGVLIVNN  208 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~  208 (304)
                      ++.++.+|++++|..+
T Consensus       248 ~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       248 EELMELAKPEVIFMHC  263 (304)
T ss_pred             HHHHhhcCCCCEEECC
Confidence            7777777777776654

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.09  E-value=0.002  Score=60.06  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=71.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCcee----------c-CCHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF----------E-EDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~----------~-~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ++|+|+|.|.||..+|-+|...|++|+.++|.....+...+ .|...          . ....+....+|+|++|+-..+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~   82 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD   82 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence            47999999999999999999999999999986433332222 12210          0 011123457899999987542


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  232 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~  232 (304)
                       +...+ +...+.+.+++.+|-.-.| +-.++.+.+.+...++.++.
T Consensus        83 -~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         83 -AEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             -HHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence             33332 4555667788877766544 34455677777665555443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.08  E-value=0.0015  Score=55.06  Aligned_cols=70  Identities=16%  Similarity=0.164  Sum_probs=49.3

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc-ee-cCCH-HhhcCcCCEEEEcCCCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KF-EEDL-DTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-~~-~~~l-~ell~~aDvVi~~~p~~  184 (304)
                      .+|.|++|.|||.|.+|...++.|...|++|+++++..  .+...+++. .. ...+ ++-+.++|+|+.++...
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~--~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~   81 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI--CKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH   81 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc--CHHHHhccCcEEEecccChhcCCCceEEEECCCCH
Confidence            47999999999999999999999999999999997643  222223321 11 0111 23467889888877543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.07  E-value=0.00075  Score=60.31  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=51.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--cCcee-------cCCHHhh-cCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--TGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--~g~~~-------~~~l~el-l~~aDvVi~~~p~~~~  186 (304)
                      +++.|+|+|.+|..+|+.|...|++|+.+++++...+....  .....       .+.|+++ +.++|+++.+...+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            57999999999999999999999999999997754444222  33221       1235555 7889999988876543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0034  Score=58.00  Aligned_cols=92  Identities=18%  Similarity=0.252  Sum_probs=61.1

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hcCc-------eecCCHHhhcCcCCEEEEcCCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ETGA-------KFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~g~-------~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ....|+++.|+|.|..+++++..|+..|+ +|++++|+..+.+... .++.       ....+++. ..++|+||.++|.
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~-~~~~dliINaTp~  200 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG-LEEADLLINATPV  200 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc-ccccCEEEECCCC
Confidence            35678999999999999999999999995 6999999875433332 2221       11122222 2269999999997


Q ss_pred             Chhhh--c-cccHHHHhcCCCCCEEEEc
Q 021995          184 TEKTR--G-MFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       184 ~~~t~--~-~i~~~~l~~mk~g~ilVn~  208 (304)
                      .-.-.  . .++   ...++++.++.|+
T Consensus       201 Gm~~~~~~~~~~---~~~l~~~~~v~D~  225 (283)
T COG0169         201 GMAGPEGDSPVP---AELLPKGAIVYDV  225 (283)
T ss_pred             CCCCCCCCCCCc---HHhcCcCCEEEEe
Confidence            54332  1 233   4456666666665

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.00  E-value=0.019  Score=52.85  Aligned_cols=180  Identities=14%  Similarity=0.132  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC----CC-------eEE
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLL  144 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~----G~-------~V~  144 (304)
                      +|--+++.+|+.+|-                    .+..|...+|.|+|.|..|-.+|+.+...    |.       +++
T Consensus         4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~   63 (279)
T cd05312           4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW   63 (279)
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence            455678888888873                    24468899999999999999999998776    77       788


Q ss_pred             EEcCCCC----C--h-----hHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccccHHHHhcCC---CCCEEEEc
Q 021995          145 YHDRVKM----D--P-----QLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNN  208 (304)
Q Consensus       145 ~~dr~~~----~--~-----~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~~~l~~mk---~g~ilVn~  208 (304)
                      .+|+...    .  .     +.++...-....+|.|+++  +.|+++=+..    .-+++.++.++.|.   +..++.=.
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaL  139 (279)
T cd05312          64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFAL  139 (279)
T ss_pred             EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            9998631    0  0     1111111012358999999  8899875442    12789999999998   89999999


Q ss_pred             CCCchhchHHHHHHHH--cCC-ceEEEeecCCCCCCCC------CCCccCCCCeEEccCCCcCCHHH-----HHHHHHHH
Q 021995          209 ARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPAPK------DHPWRYMPNQAMTPHVSGTTIDA-----QLRYAAGV  274 (304)
Q Consensus       209 ~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~ep~~~------~~~l~~~~nv~lTPHia~~t~e~-----~~~~~~~~  274 (304)
                      |+....-|-.=.++++  +|+ |.+.+      -|+++      ....-+..|+++=|=++-..-.+     -+.|...+
T Consensus       140 SNPt~~~E~~pe~a~~~t~G~ai~ATG------sPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aA  213 (279)
T cd05312         140 SNPTSKAECTAEDAYKWTDGRALFASG------SPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAA  213 (279)
T ss_pred             CCcCCccccCHHHHHHhhcCCEEEEeC------CCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHH
Confidence            9987744444444444  355 44322      23221      11112456788888775432211     13344445


Q ss_pred             HHHHHHHHcCC
Q 021995          275 KDMLDRYFKGE  285 (304)
Q Consensus       275 ~~~l~~~~~g~  285 (304)
                      .+.|-++..-+
T Consensus       214 A~aLA~~~~~~  224 (279)
T cd05312         214 AEALASLVTDE  224 (279)
T ss_pred             HHHHHHhCCcc
Confidence            55555554433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=97.00  E-value=0.016  Score=54.93  Aligned_cols=133  Identities=14%  Similarity=0.124  Sum_probs=82.9

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++..+|+|.|.-+....++  .+|+=++.+.+++         |         .+..+.|.+|+++|- .++.++++..
T Consensus       114 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g---------~g~~l~glkv~~vGD~~~v~~Sl~~~  173 (338)
T PRK02255        114 LAKYATVPVINGMSDYNHPT--QELGDLFTMIEHL---------P---------EGKKLEDCKVVFVGDATQVCVSLMFI  173 (338)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh---------C---------CCCCCCCCEEEEECCCchHHHHHHHH
Confidence            35567899999654332221  2333344443321         0         012588999999996 6789999999


Q ss_pred             hccCCCeEEEEcCCCC-C-hhHH-------HhcC--ceecCCHHhhcCcCCEEEEcC-----CCC---hh------hhcc
Q 021995          136 LKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVNT-----PLT---EK------TRGM  190 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~-~~~~-------~~~g--~~~~~~l~ell~~aDvVi~~~-----p~~---~~------t~~~  190 (304)
                      +..+|++|.++.|... . .+..       +..|  +...+++++.++++|+|..-.     ...   ++      -...
T Consensus       174 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~  253 (338)
T PRK02255        174 ATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQ  253 (338)
T ss_pred             HHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCce
Confidence            9999999999987642 2 1221       1224  445689999999999998833     110   00      0134


Q ss_pred             ccHHHHhcCCCCCEEEEcC
Q 021995          191 FDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~  209 (304)
                      ++++.++.+|++++|..+.
T Consensus       254 v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        254 VTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             ECHHHHhccCCCCEEeCCC
Confidence            5677777777777666553

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.00  E-value=0.0017  Score=63.43  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCcee-------cCCHHhh-cCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~-------~~~l~el-l~~aDvVi~~~p~~~~  186 (304)
                      ++|.|+|+|.+|+.+++.|...|++|+++++++...+..++ .++..       ...++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            47999999999999999999999999999987654444433 33321       1234455 7889999999886543

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.99  E-value=0.0046  Score=60.80  Aligned_cols=114  Identities=14%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC--CCC-h----h
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~--p~~-~----~  186 (304)
                      ++.|++|.|+|+|..|..+|+.|+..|++|.++|..........+.|+.....-.+.+.++|+|+..-  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            47789999999999999999999999999999997543222233446543211123356899887642  321 1    1


Q ss_pred             hh---c----cccH-HHHhc-C-----CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          187 TR---G----MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       187 t~---~----~i~~-~~l~~-m-----k~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      ..   .    ++.+ +.+.. +     +...+-|--+.|+.-...-|...|+...
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g  140 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG  140 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            11   1    1222 22222 2     3345667777899988888888887643

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.97  E-value=0.013  Score=55.01  Aligned_cols=95  Identities=9%  Similarity=0.024  Sum_probs=70.3

Q ss_pred             hhHHHHHHhccCCCeEEEEcCCCCChh-------HH-----------HhcC-------------ceecCC--HHhhcCcC
Q 021995          128 IGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LE-----------KETG-------------AKFEED--LDTMLPKC  174 (304)
Q Consensus       128 IG~~lA~~l~~~G~~V~~~dr~~~~~~-------~~-----------~~~g-------------~~~~~~--l~ell~~a  174 (304)
                      ||..+|..+...|++|..||+++...+       ..           .+.|             +....+  +.+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            689999999988999999999874210       00           0111             222222  55788999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      |+|+-++|.+.+.+..+-.+..+.++++++|  ++.-+.+....|.+.+.
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            9999999999998888877888889999999  55556667777777664

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.96  E-value=0.0041  Score=57.91  Aligned_cols=113  Identities=18%  Similarity=0.245  Sum_probs=66.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHh---c----C----ceecCCHHhhcCcCCEEEEcCC--
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE---T----G----AKFEEDLDTMLPKCDIVVVNTP--  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~---~----g----~~~~~~l~ell~~aDvVi~~~p--  182 (304)
                      ++|+|||.|.+|..+|..+...|. +|..+|++...... ..+   .    +    +....+. +.+++||+|+++..  
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p   81 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP   81 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence            589999999999999999887654 99999986543211 111   0    1    1122355 45789999999863  


Q ss_pred             CChh---------hhccccHHHH---hcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEEE
Q 021995          183 LTEK---------TRGMFDKDRI---AKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS  232 (304)
Q Consensus       183 ~~~~---------t~~~i~~~~l---~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga~  232 (304)
                      ..+.         +..++ .+.+   ....+++++|+.+...-+-...+.+.  +...++.|.+
T Consensus        82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence            2211         11111 2222   22346788888876554444444442  2234566654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.95  E-value=0.0023  Score=58.49  Aligned_cols=89  Identities=17%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCC---HHh----hc--CcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEED---LDT----ML--PKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~---l~e----ll--~~aDvVi~~~p~~~  185 (304)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++.+.+.++++|+..+-+   ..+    +.  ...|+++-++....
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~  199 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA  199 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence            688999999999999999999999997 888887766666777777643211   111    11  24788877764322


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .     -.+.++.++++..++.++
T Consensus       200 ~-----~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       200 A-----VRACLESLDVGGTAVLAG  218 (280)
T ss_pred             H-----HHHHHHHhcCCCEEEEec
Confidence            1     145567778888888776

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.94  E-value=0.0045  Score=58.89  Aligned_cols=95  Identities=16%  Similarity=0.196  Sum_probs=60.3

Q ss_pred             CEEEEEee-ChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcC----c--eecC--CHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETG----A--KFEE--DLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g----~--~~~~--~l~ell~~aDvVi~~~p~~~  185 (304)
                      ++|+|+|. |.+|+.+++.|... ++++. .+++.....+ ....++    .  ..+.  +.++++.++|++++|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            47999998 99999999999876 77877 4454331111 111111    0  0112  45666678999999999542


Q ss_pred             hhhccccHHHHhcC-CCCCEEEEcCCCchhchHH
Q 021995          186 KTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQA  218 (304)
Q Consensus       186 ~t~~~i~~~~l~~m-k~g~ilVn~~rg~~vd~~a  218 (304)
                      .      .+....+ +.|..+||.|..--.+..+
T Consensus        81 s------~~~~~~~~~~G~~VIDlS~~fR~~~~~  108 (346)
T TIGR01850        81 S------AELAPELLAAGVKVIDLSADFRLKDPE  108 (346)
T ss_pred             H------HHHHHHHHhCCCEEEeCChhhhcCChh
Confidence            2      3333333 5789999999655555433

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.94  E-value=0.00032  Score=62.10  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----------C------------------ceecC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----------G------------------AKFEE  165 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----------g------------------~~~~~  165 (304)
                      ..-+.|+|||.|.||+.+|+.....|+.|+.+|++......+.+.           +                  ++...
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            345689999999999999999999999999999976433322210           0                  11124


Q ss_pred             CHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHHcCCceEEEeecCCCC
Q 021995          166 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  239 (304)
Q Consensus       166 ~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~e  239 (304)
                      ++.++++.+|+|+=+.--+.+.+.-+-++.=..+|+.+++. |++   .+...++..+++.... .++|--|.+-
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~sr-f~GlHFfNPv  159 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRPSR-FAGLHFFNPV  159 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccChhh-hceeeccCCc
Confidence            45566777777765554332222222223333457777775 333   3445566666655443 3677766543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.92  E-value=0.0034  Score=59.09  Aligned_cols=116  Identities=16%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHH----h---cC----ceecCCHHhhcCcCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEK----E---TG----AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~----~---~g----~~~~~~l~ell~~aDvVi~~~  181 (304)
                      +..++|+|||.|.+|..+|..+...|. +|+.+|.++.... ...    .   .+    +....+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            345799999999999999998877774 8999998764321 011    0   11    2223466 4679999999976


Q ss_pred             CCC--h--------------hhhccccHHH---HhcCCCCCEEEEcCCCchhchHHHHHHHH--cCCceEEE
Q 021995          182 PLT--E--------------KTRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS  232 (304)
Q Consensus       182 p~~--~--------------~t~~~i~~~~---l~~mk~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~  232 (304)
                      -..  +              .+..++ .+.   +....|.+++|+++...-+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            321  1              111111 122   23335778999998655444555544332  34566655

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.91  E-value=0.002  Score=56.50  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~  149 (304)
                      ..|.+++|.|+|+|.+|..+++.|...|. +++.+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46899999999999999999999999998 68999876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.91  E-value=0.0023  Score=50.43  Aligned_cols=85  Identities=24%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCH---Hh-hcCcCCEEEEcCCCChhhhccc
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DT-MLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l---~e-ll~~aDvVi~~~p~~~~t~~~i  191 (304)
                      |.|+|+|.+|+.+++.|+..+.+|+++++++...+.+.+.|+...    .+.   ++ -++++|.++++.+....+  +.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence            579999999999999999977799999987755566666664321    122   22 357899999998855443  33


Q ss_pred             cHHHHhcCCCCCEEE
Q 021995          192 DKDRIAKMKKGVLIV  206 (304)
Q Consensus       192 ~~~~l~~mk~g~ilV  206 (304)
                      -...++.+-+...+|
T Consensus        79 ~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   79 IALLARELNPDIRII   93 (116)
T ss_dssp             HHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHCCCCeEE
Confidence            245555555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.89  E-value=0.002  Score=64.09  Aligned_cols=113  Identities=18%  Similarity=0.232  Sum_probs=72.2

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecC--CHHhhcCcCCEEEEcCCCChhhh----
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTR----  188 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~--~l~ell~~aDvVi~~~p~~~~t~----  188 (304)
                      +.|++|.|+|+|.+|.+.++.|+..|++|+++|..+...+.+++.|+....  ...+.++++|+|+.+-.-.+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            478999999999999999999999999999999754333334445664431  23456778998887642222111    


Q ss_pred             ------ccccHHHHh-cC--------CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          189 ------GMFDKDRIA-KM--------KKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       189 ------~~i~~~~l~-~m--------k~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                            .++.+-.+. .+        +...+-|--+-|+.-...-+.+.|+...
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g  143 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG  143 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence                  122222221 11        1124455556788888887888887643

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.88  E-value=0.0018  Score=63.28  Aligned_cols=107  Identities=13%  Similarity=0.022  Sum_probs=67.3

Q ss_pred             CEEEEEeeChhhHHHHH---Hh---ccCCCeEEEEcCCCCChhHHHh--------c----CceecCCHHhhcCcCCEEEE
Q 021995          118 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLEKE--------T----GAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~---~l---~~~G~~V~~~dr~~~~~~~~~~--------~----g~~~~~~l~ell~~aDvVi~  179 (304)
                      .+|+|||.|.+|...+-   .+   ...|.+|..||+++...+....        .    .+....++++.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998554   22   3447799999997643322111        1    12345688899999999999


Q ss_pred             cCCCCh--h-hh--------c-------------c--------ccHHHHhcC---CCCCEEEEcCCCchhchHHHHHHHH
Q 021995          180 NTPLTE--K-TR--------G-------------M--------FDKDRIAKM---KKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       180 ~~p~~~--~-t~--------~-------------~--------i~~~~l~~m---k~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +.|...  . .+        +             +        +-.+..+.+   .|+++++|.+...-+-..++.+...
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            998310  0 00        0             0        111233333   3689999998777666666665543

linked to 3D####ucture

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.87  E-value=0.0067  Score=54.96  Aligned_cols=88  Identities=18%  Similarity=0.335  Sum_probs=60.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  197 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~  197 (304)
                      .++-|+|.|.+++.+++.++.+|++|+++|..+.   ..          ....+..++.+....|          .+.+.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~----------~~~~~~~~~~~~~~~~----------~~~~~  157 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EF----------PEDLPDGVATLVTDEP----------EAEVA  157 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---cc----------cccCCCCceEEecCCH----------HHHHh
Confidence            4899999999999999999999999999997542   00          0011234443332222          23333


Q ss_pred             cCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          198 KMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       198 ~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      .+.++..+|=+.++.-.|.+.|..+|.+...
T Consensus       158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       158 EAPPGSYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             cCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence            4567778888889999999999999854433

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.87  E-value=0.013  Score=55.39  Aligned_cols=132  Identities=14%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++..+|+|.|.-+....++  .+|+=++.+.+++                   .+..+.|.+|++||-+  ++.++++.
T Consensus       117 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-------------------g~~~l~g~~ia~vGD~~~~v~~Sl~~  175 (336)
T PRK03515        117 LAEYAGVPVWNGLTNEFHPT--QLLADLLTMQEHL-------------------PGKAFNEMTLAYAGDARNNMGNSLLE  175 (336)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------CCCCcCCCEEEEeCCCcCcHHHHHHH
Confidence            45667899999754332221  2344444444321                   0124789999999976  68999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCcCCEEEEcCCCCh-------------hhhcc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVNTPLTE-------------KTRGM  190 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVi~~~p~~~-------------~t~~~  190 (304)
                      .+..+|+++.++.|... +.+        .++..|  +...+++++.++++|+|....=...             .....
T Consensus       176 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~  255 (336)
T PRK03515        176 AAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQ  255 (336)
T ss_pred             HHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCc
Confidence            99999999999987542 221        122234  4456899999999999987521100             01123


Q ss_pred             ccHHHHhcC-CCCCEEEEcC
Q 021995          191 FDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~m-k~g~ilVn~~  209 (304)
                      ++++.++.. |++++|..+.
T Consensus       256 v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        256 VNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             cCHHHHhcccCCCCEEECCC
Confidence            456666653 5666666553

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.86  E-value=0.038  Score=50.14  Aligned_cols=159  Identities=14%  Similarity=0.107  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCC-----------eEE
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLL  144 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-----------~V~  144 (304)
                      +|--+++.+|+.+|-                    .+..|...+|.|+|.|..|-.+|+.+...+.           +++
T Consensus         4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~   63 (254)
T cd00762           4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW   63 (254)
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence            455678888888872                    2346889999999999999999999987655           688


Q ss_pred             EEcCCCC----C--h-hHHHh---c--CceecCCHHhhcC--cCCEEEEcCCCChhhhccccHHHHhcCC---CCCEEEE
Q 021995          145 YHDRVKM----D--P-QLEKE---T--GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVN  207 (304)
Q Consensus       145 ~~dr~~~----~--~-~~~~~---~--g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~~~l~~mk---~g~ilVn  207 (304)
                      .+|+...    .  . ...+.   +  ......+|.|+++  +.|+++=...    ..+++.++.++.|.   +..++.=
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEE
Confidence            8887631    0  0 00011   1  1122358999999  9999875432    23789999999998   8999999


Q ss_pred             cCCCchhchHHHHHHHHc--C-CceEEEeecCCCCCCCCCC---CccCCCCeEEccCCCc
Q 021995          208 NARGAIMDTQAVVDACSS--G-HIAGYSGDVWNPQPAPKDH---PWRYMPNQAMTPHVSG  261 (304)
Q Consensus       208 ~~rg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~ep~~~~~---~l~~~~nv~lTPHia~  261 (304)
                      .|+....-|-.=.++.+-  | .|.+-+.   ...|..-+.   ..-+..|+++=|=++-
T Consensus       140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGs---pf~pv~~~g~~~~~~Q~NN~~iFPGigl  196 (254)
T cd00762         140 LSNPTSKAECTAEEAYTATEGRAIFASGS---PFHPVELNGGTYKPGQGNNLYIFPGVAL  196 (254)
T ss_pred             CCCcCCccccCHHHHHhhcCCCEEEEECC---CCCCcccCCceeecccccceeeccchhh
Confidence            999887444333333333  3 3433222   111221111   1124568888887754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.85  E-value=0.0037  Score=59.32  Aligned_cols=67  Identities=27%  Similarity=0.314  Sum_probs=44.7

Q ss_pred             CEEEEEeeChhhHHHHHHhcc-CCCeEEEE-cCCCCChh-HHHhc------------------CceecCCHHhhcCcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDPQ-LEKET------------------GAKFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~-dr~~~~~~-~~~~~------------------g~~~~~~l~ell~~aDv  176 (304)
                      .+|||+|+|.||+.+++.+.. -++++.+. ++++.... .++..                  ++....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            389999999999999998874 47887655 43321111 11111                  22233567788889999


Q ss_pred             EEEcCCCC
Q 021995          177 VVVNTPLT  184 (304)
Q Consensus       177 Vi~~~p~~  184 (304)
                      |+.|.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998743

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=96.85  E-value=0.0038  Score=58.54  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=67.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHH-hhcCcCCEEEEcCCCChhhhccccHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD-TMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~-ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      .|.+|.|.|.|.+|..+++.++.+|++|++.++++.+.+.++++|+..+-+.. +.-...|+++.+.... .   . -..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence            58899999999999999999999999999998887777888888875432211 1123468777665532 1   2 256


Q ss_pred             HHhcCCCCCEEEEcCC
Q 021995          195 RIAKMKKGVLIVNNAR  210 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~r  210 (304)
                      .++.++++..++.++.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            7788999999988874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.85  E-value=0.0082  Score=55.84  Aligned_cols=106  Identities=13%  Similarity=0.193  Sum_probs=74.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh-------
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~-------  188 (304)
                      .|++++|||--.--..++++|.+.|++|.++.-...  + -...|+...++.+++++++|+|++-.|.+.+..       
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~   77 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--D-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS   77 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--c-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence            378999999999999999999999999987653211  1 122366666678899999999999888653221       


Q ss_pred             ---ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          189 ---GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       189 ---~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                         --++.+.+++|++++.++ ++.+..-    +-+.+.+.++.
T Consensus        78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~  116 (296)
T PRK08306         78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK  116 (296)
T ss_pred             ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence               113678999999998544 4443322    33556677776

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.82  E-value=0.0067  Score=57.64  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--CCeEE-EEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCC-hhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-EKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--G~~V~-~~dr~~~~-~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~-~~t~~~i~  192 (304)
                      .+|||||. .+|+..++.++..  +++++ ++|++... .+.++++|+..++++++++.+.|++++++|.+ +...|.  
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~--   80 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS--   80 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence            58999999 6799999888764  57755 67876543 34556678777789999999999999998742 221221  


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  231 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga  231 (304)
                      +-..+.|+.|.-++.=---..-+.++|+++.++..+...
T Consensus        81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            233344555544443222224566778888887776633

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.82  E-value=0.019  Score=54.24  Aligned_cols=131  Identities=15%  Similarity=0.188  Sum_probs=83.3

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++..+|+|.|.-+....++  .+|+=++.+.+++                   .| .+.|++|++||-+  ++.++++.
T Consensus       117 ~a~~s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~-------------------~g-~l~g~kia~vGD~~~~v~~Sl~~  174 (332)
T PRK04284        117 LAEYSGVPVWNGLTDEDHPT--QVLADFLTAKEHL-------------------KK-PYKDIKFTYVGDGRNNVANALMQ  174 (332)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------cC-CcCCcEEEEecCCCcchHHHHHH
Confidence            45667899999754433222  2344444444321                   01 3789999999975  88999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-H-------HHhcC--ceecCCHHhhcCcCCEEEEcCCCC--h------h-----hhcc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-L-------EKETG--AKFEEDLDTMLPKCDIVVVNTPLT--E------K-----TRGM  190 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~-------~~~~g--~~~~~~l~ell~~aDvVi~~~p~~--~------~-----t~~~  190 (304)
                      .+..+|++|.+..|... +.+ .       ++..|  +....++++.++++|+|..-.=..  .      +     -...
T Consensus       175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~  254 (332)
T PRK04284        175 GAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQ  254 (332)
T ss_pred             HHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCc
Confidence            99999999999987542 211 1       12344  345689999999999998752100  0      0     1223


Q ss_pred             ccHHHHhcCC-CCCEEEEcC
Q 021995          191 FDKDRIAKMK-KGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~mk-~g~ilVn~~  209 (304)
                      ++++.++.++ ++++|..+.
T Consensus       255 v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        255 VNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             CCHHHHhhcCCCCcEEECCC
Confidence            5667777775 477766654

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.81  E-value=0.0099  Score=55.47  Aligned_cols=96  Identities=21%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             ccCCCEEEEEeeC---hhhHHHHHHhccCCCeEEEEcCCCC--Chh---HHHhcCc--eecCCHHhhcCcCCEEEEcCCC
Q 021995          114 DLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQ---LEKETGA--KFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       114 ~L~g~~vgIIG~G---~IG~~lA~~l~~~G~~V~~~dr~~~--~~~---~~~~~g~--~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .+.|.+|+++|-|   ++.++++..+..+|++|.+..|...  +.+   .+++.|.  ...+++++.++++|+|....-.
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~  226 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ  226 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence            4789999999985   9999999999999999999987653  222   1223353  3467999999999999774211


Q ss_pred             C-----h-h-----hhccccHHHHhcCCCCCEEEEcC
Q 021995          184 T-----E-K-----TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~-----~-~-----t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .     . +     ...-++++.++.++++++|..+.
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence            0     0 0     02235667777777777776554

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.81  E-value=0.003  Score=57.39  Aligned_cols=101  Identities=27%  Similarity=0.233  Sum_probs=65.4

Q ss_pred             cccccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhH------HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995          111 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL------EKETGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~------~~~~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .|.+|+..+++|+|+ |.||..+|+.|.+.++.....-|.......      ..+.+.....+++..+.+.|+++-....
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            467899999999996 999999999999988886666543321111      1122333334566555555555433221


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCchhch
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  216 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~  216 (304)
                        .+-..|+.+.   +|||+.+||-++..=+|+
T Consensus       241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             --CCCceechhh---ccCCeEEEcCCcCccccc
Confidence              1234555554   699999999998775544

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.80  E-value=0.0064  Score=56.85  Aligned_cols=93  Identities=20%  Similarity=0.277  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEee---ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh----
Q 021995          114 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----  186 (304)
Q Consensus       114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~----  186 (304)
                      .+.|++|+++|-   +++.++++..+..+|++|.+..|....++...  .....+++++.++++|+|....-..+.    
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~  230 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLRVQKERMDGG  230 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECCccccccccc
Confidence            478999999997   58999999999999999999987542221111  135568999999999999775411000    


Q ss_pred             ----h-----hccccHHHHhcCCCCCEEEEc
Q 021995          187 ----T-----RGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       187 ----t-----~~~i~~~~l~~mk~g~ilVn~  208 (304)
                          .     ...++++.++.+|++++|..+
T Consensus       231 ~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc  261 (305)
T PRK00856        231 LLPSYEEYKRSYGLTAERLALAKPDAIVMHP  261 (305)
T ss_pred             chHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence                0     123566666666666666544

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.78  E-value=0.0068  Score=56.42  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=60.2

Q ss_pred             CCEEEEEeeChhhHHHHHHhcc-CCCeEE-EEcCCCCCh--hHHHhcCcee-cCCHHhhcC-----cCCEEEEcCCCChh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK  186 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~--~~~~~~g~~~-~~~l~ell~-----~aDvVi~~~p~~~~  186 (304)
                      ..++||||.|+||+.+...+.. -++++. ++|+++...  ..++++|+.. +++++++++     +.|+|+.++|....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4589999999999997766654 467755 667765432  4566678754 468888884     58889999985322


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .     +......+.|..+|+-+
T Consensus        84 ~-----e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 V-----RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             H-----HHHHHHHHcCCeEEECC
Confidence            1     22233356788888876

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.78  E-value=0.026  Score=53.33  Aligned_cols=130  Identities=17%  Similarity=0.230  Sum_probs=82.1

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++..+|+|.|.-+....++  .+|+=++.+.+++                    | .+.|++|++||-+  ++.++++.
T Consensus       118 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~g~~va~vGd~~~~v~~Sl~~  174 (331)
T PRK02102        118 LAKYSGVPVWNGLTDEWHPT--QMLADFMTMKEHF--------------------G-PLKGLKLAYVGDGRNNMANSLMV  174 (331)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEECCCcccHHHHHHH
Confidence            45567899999855332221  2333344443311                    1 3789999999987  79999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh--------HHHhcCc--eecCCHHhhcCcCCEEEEcCCC--C-----hh-----hhccc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ--------LEKETGA--KFEEDLDTMLPKCDIVVVNTPL--T-----EK-----TRGMF  191 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~--------~~~~~g~--~~~~~l~ell~~aDvVi~~~p~--~-----~~-----t~~~i  191 (304)
                      .+..+|++|.+..|... ..+        .++..|.  ...++++++++++|+|..-+=.  .     ++     ...-+
T Consensus       175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~v  254 (331)
T PRK02102        175 GGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQV  254 (331)
T ss_pred             HHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcC
Confidence            99999999999987542 221        1223343  3457899999999999875311  0     00     11235


Q ss_pred             cHHHHh-cCCCCCEEEEcC
Q 021995          192 DKDRIA-KMKKGVLIVNNA  209 (304)
Q Consensus       192 ~~~~l~-~mk~g~ilVn~~  209 (304)
                      +++.++ .+|++++|..+.
T Consensus       255 t~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        255 NMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             CHHHHhhhcCCCCEEECCC
Confidence            666666 367777766553

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.76  E-value=0.0097  Score=55.17  Aligned_cols=72  Identities=18%  Similarity=0.232  Sum_probs=49.2

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCC---Chh-HHHhcCc-----eecCCH------HhhcCcCCE
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DPQ-LEKETGA-----KFEEDL------DTMLPKCDI  176 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~---~~~-~~~~~g~-----~~~~~l------~ell~~aDv  176 (304)
                      ..+.|+++.|+|.|..+++++..|...|+ +|++++|+..   +.+ .+...+.     ....++      .+.+.++|+
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi  199 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI  199 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence            45789999999999999999998888887 6999999853   221 2222211     011222      234567899


Q ss_pred             EEEcCCCC
Q 021995          177 VVVNTPLT  184 (304)
Q Consensus       177 Vi~~~p~~  184 (304)
                      |+.++|..
T Consensus       200 vINaTp~G  207 (288)
T PRK12749        200 LTNGTKVG  207 (288)
T ss_pred             EEECCCCC
Confidence            99988853

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.76  E-value=0.0025  Score=60.39  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~  150 (304)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|+..
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46899999999999999999999999998 688888863

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.74  E-value=0.027  Score=52.81  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             ccCCCEEEEEee---ChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~  180 (304)
                      .+.|.+|+++|-   +++.++++..+..+|+ +|.+..|....++......+...+++++.++++|+|...
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~  224 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTL  224 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEEC
Confidence            378999999997   6999999999999999 899988754222211112345568999999999999773

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.74  E-value=0.0036  Score=63.85  Aligned_cols=92  Identities=21%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHH---h-hcCcCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD---T-MLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~---e-ll~~aDvVi~~~p~~~~t~  188 (304)
                      ..+|.|+|+|++|+.+++.|...|.++++.|.++...+..++.|...+    .+.+   + -+++||.++++.+..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            457999999999999999999999999999998766666666664321    2222   2 2678999999999776654


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .++  ...+.+.|...+|--+|
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeC
Confidence            442  34455556655655443

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.73  E-value=0.037  Score=52.39  Aligned_cols=132  Identities=14%  Similarity=0.134  Sum_probs=84.3

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++..+|+|.|.-+....++  .+|+=++.+.+++                   .+..+.|.+|++||-+  ++.++++.
T Consensus       117 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-------------------g~~~l~gl~va~vGD~~~~v~~S~~~  175 (334)
T PRK12562        117 LAEYAGVPVWNGLTNEFHPT--QLLADLLTMQEHL-------------------PGKAFNEMTLVYAGDARNNMGNSMLE  175 (334)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------CCCCcCCcEEEEECCCCCCHHHHHHH
Confidence            45667899999865433332  2344444444321                   1124789999999975  78999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-H-------HHhcC--ceecCCHHhhcCcCCEEEEcCC----C-Ch---h-----hhcc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-L-------EKETG--AKFEEDLDTMLPKCDIVVVNTP----L-TE---K-----TRGM  190 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~-------~~~~g--~~~~~~l~ell~~aDvVi~~~p----~-~~---~-----t~~~  190 (304)
                      .+..+|++|.+..|... +.+ .       ++..|  +...+++++.++++|+|....=    . .+   +     -..-
T Consensus       176 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~  255 (334)
T PRK12562        176 AAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQ  255 (334)
T ss_pred             HHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCc
Confidence            99999999999887542 211 1       12234  3446799999999999987541    0 00   0     1223


Q ss_pred             ccHHHHhcC-CCCCEEEEcC
Q 021995          191 FDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~m-k~g~ilVn~~  209 (304)
                      ++++.++.. +++++|..+.
T Consensus       256 v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        256 VNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             CCHHHHHhhcCCCCEEECCC
Confidence            567777774 6777777664

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=96.73  E-value=0.0062  Score=55.00  Aligned_cols=91  Identities=13%  Similarity=0.190  Sum_probs=72.5

Q ss_pred             hHHHHHHhccCCCeEEEEcCCCCC--h---hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995          129 GKLLLQRLKPFNCNLLYHDRVKMD--P---QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  203 (304)
Q Consensus       129 G~~lA~~l~~~G~~V~~~dr~~~~--~---~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~  203 (304)
                      |..+|-.+...|+.|+..+|+..-  .   +...+.|++.+++-.+..+.+.+.++..|....|.++. ++.+..++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            667888888889999999987632  2   22345688887777789999999999999998887775 78999999999


Q ss_pred             EEEEcCCCchhchHHHHHHH
Q 021995          204 LIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       204 ilVn~~rg~~vd~~aL~~aL  223 (304)
                      ++.|+..-+.+   .|+..|
T Consensus       112 VicnTCT~sp~---vLy~~L  128 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             EecccccCchh---HHHHHh
Confidence            99999876544   455555

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.70  E-value=0.0032  Score=59.63  Aligned_cols=63  Identities=22%  Similarity=0.385  Sum_probs=47.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCc-eec---CCHHhhcCcCCEEEE
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFE---EDLDTMLPKCDIVVV  179 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~-~~~---~~l~ell~~aDvVi~  179 (304)
                      +++|||||-|-.|+.++.....+|++|++.|+++..+... .+.-+ ..+   ..+.++.+.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999999999999999999877543221 11111 112   257789999999976

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.69  E-value=0.0042  Score=57.94  Aligned_cols=92  Identities=18%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhH-HHhc-------Cc--e-ecCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------GA--K-FEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~-~~~~-------g~--~-~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||.|.+|+.+|..|...|  .+|..+|++....+. +.++       +.  . ...+. +.+++||+|+++....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence            48999999999999999998888  479999997643321 1111       11  1 12234 4578999999987642


Q ss_pred             hh---hh--------cccc--HHHHhcCCCCCEEEEcCC
Q 021995          185 EK---TR--------GMFD--KDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~---t~--------~~i~--~~~l~~mk~g~ilVn~~r  210 (304)
                      ..   ++        .++.  .+.+....+.+++++++.
T Consensus        80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            11   11        1110  112334467889999873

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.68  E-value=0.0055  Score=56.95  Aligned_cols=111  Identities=19%  Similarity=0.293  Sum_probs=63.8

Q ss_pred             EEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-----HHHh---cC----ceecCCHHhhcCcCCEEEEcCCC--C
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---TG----AKFEEDLDTMLPKCDIVVVNTPL--T  184 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-----~~~~---~g----~~~~~~l~ell~~aDvVi~~~p~--~  184 (304)
                      |+|||.|.||..+|..+...|. +|+.+|+++....     ....   .+    +....+.+ .+++||+|+++...  .
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~   79 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence            6899999999999998876554 9999998754221     0000   01    12224554 58999999997632  1


Q ss_pred             h---------hhhccccHHH---HhcCCCCCEEEEcCCCchhchHHHHHHH--HcCCceEEE
Q 021995          185 E---------KTRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDAC--SSGHIAGYS  232 (304)
Q Consensus       185 ~---------~t~~~i~~~~---l~~mk~g~ilVn~~rg~~vd~~aL~~aL--~~g~i~ga~  232 (304)
                      +         .+..++ .+.   +....+++++|+.+...-+-...+.+..  ...++.|.+
T Consensus        80 ~~~~r~e~~~~n~~i~-~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          80 PGMSRDDLLGTNAKIV-KEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             cCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence            1         111111 122   2334567888888855444444444432  223455555

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.68  E-value=0.034  Score=49.58  Aligned_cols=93  Identities=19%  Similarity=0.230  Sum_probs=59.4

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCCh-------------------hHH----HhcC----cee-
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QLE----KETG----AKF-  163 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~-------------------~~~----~~~g----~~~-  163 (304)
                      ..|..++|.|+|+|.+|..+|+.|...|. +++.+|......                   +.+    ++..    ++. 
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 477776542100                   000    0110    111 


Q ss_pred             -----cCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          164 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       164 -----~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                           .++++++++++|+|+.|+. +..++..+++...+   .+.-+|+++
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence                 1234567888999888865 45566666544443   344566664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.68  E-value=0.0037  Score=60.25  Aligned_cols=100  Identities=15%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcC-------ceecCCHH-hhcCcCCEEEEcCCCC
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETG-------AKFEEDLD-TMLPKCDIVVVNTPLT  184 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~-ell~~aDvVi~~~p~~  184 (304)
                      ...++|+|+|. |.+|+.+.+.|... +++|..+.+.....+......       .....+++ +.++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            35569999996 99999999999876 778887765332211111101       11112222 2258899999999953


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  220 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~  220 (304)
                            ...+..+.|+.|..+||.+..--.+.++.+
T Consensus       116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y  145 (381)
T PLN02968        116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEY  145 (381)
T ss_pred             ------HHHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence                  224555556788999999976666555433

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.67  E-value=0.014  Score=57.88  Aligned_cols=102  Identities=15%  Similarity=0.173  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----------------------Cc
Q 021995          114 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA  161 (304)
Q Consensus       114 ~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g~  161 (304)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+.-...+....+                      .+
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            588999999997          5578899999999999999999863221111111                      12


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhccccH-HHHhcCCCCCEEEEcCCCchhchHHH
Q 021995          162 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK-DRIAKMKKGVLIVNNARGAIMDTQAV  219 (304)
Q Consensus       162 ~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~-~~l~~mk~g~ilVn~~rg~~vd~~aL  219 (304)
                      ....++++.++++|+|+++....+ .+. ++- +..+.|++..+++|. |+- +|.+.+
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~  455 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKL  455 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            445567789999999999988543 223 333 335667766688885 443 354444

>PLN02342 ornithine carbamoyltransferase

Probab=96.67  E-value=0.055  Score=51.51  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=83.8

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++..+++|.|.-+....++  .+|+-++.+.+++                    | .+.|++|+++|- .++.++++..
T Consensus       157 la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~~--------------------G-~l~glkva~vGD~~nva~Sli~~  213 (348)
T PLN02342        157 LAEYSSVPVINGLTDYNHPC--QIMADALTIIEHI--------------------G-RLEGTKVVYVGDGNNIVHSWLLL  213 (348)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CcCCCEEEEECCCchhHHHHHHH
Confidence            45667899999855332221  2344444443321                    1 478999999996 4688888899


Q ss_pred             hccCCCeEEEEcCCCC-Chh-H---HHhcC---ceecCCHHhhcCcCCEEEEcC----CCChh--------hhccccHHH
Q 021995          136 LKPFNCNLLYHDRVKM-DPQ-L---EKETG---AKFEEDLDTMLPKCDIVVVNT----PLTEK--------TRGMFDKDR  195 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~-~---~~~~g---~~~~~~l~ell~~aDvVi~~~----p~~~~--------t~~~i~~~~  195 (304)
                      +..+|++|.+..|... +.+ .   +++.|   +...+++++.++++|+|....    ...+.        ....++++.
T Consensus       214 ~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~el  293 (348)
T PLN02342        214 AAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEAL  293 (348)
T ss_pred             HHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHH
Confidence            9999999999987642 221 1   22233   345689999999999998763    11111        113467777


Q ss_pred             HhcCCCCCEEEEcC
Q 021995          196 IAKMKKGVLIVNNA  209 (304)
Q Consensus       196 l~~mk~g~ilVn~~  209 (304)
                      ++.+|++++|..+.
T Consensus       294 l~~ak~~aivMHpL  307 (348)
T PLN02342        294 MKLAGPQAYFMHCL  307 (348)
T ss_pred             HhccCCCcEEeCCC
Confidence            77778777776553

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.66  E-value=0.0078  Score=57.17  Aligned_cols=95  Identities=22%  Similarity=0.304  Sum_probs=58.7

Q ss_pred             CEEEEEee-ChhhHHHHHHhccC-CCeEEE-EcCCCCChhHHHhcC-ce-----ecCCHHh-hcCcCCEEEEcCCCChhh
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~-G~~V~~-~dr~~~~~~~~~~~g-~~-----~~~~l~e-ll~~aDvVi~~~p~~~~t  187 (304)
                      ++|+|+|. |.+|+.+++.|... ++++.+ +++...........+ ..     .++++++ ...++|+|++|+|.... 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence            58999996 99999999999876 678654 554322111111111 10     1223332 45789999999996432 


Q ss_pred             hccccHHHHh-cCCCCCEEEEcCCCchhchHH
Q 021995          188 RGMFDKDRIA-KMKKGVLIVNNARGAIMDTQA  218 (304)
Q Consensus       188 ~~~i~~~~l~-~mk~g~ilVn~~rg~~vd~~a  218 (304)
                           .+... .++.|..+||.|-.--.+..+
T Consensus        82 -----~~~v~~a~~aG~~VID~S~~fR~~~~~  108 (343)
T PRK00436         82 -----MDLAPQLLEAGVKVIDLSADFRLKDPE  108 (343)
T ss_pred             -----HHHHHHHHhCCCEEEECCcccCCCCch
Confidence                 22222 235789999999666554433

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.65  E-value=0.0065  Score=56.87  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------------CCHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------------~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ++|.|+|.|.||.-++.+|...|..|+.+.|++. .+..++.|....            ....+.+..+|+|++++-...
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence            4899999999999999999999977888888553 444454443211            122355668999999987543


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      . ...+ +...+.+++.+.++-.-.| +=.++.+...+...++.
T Consensus        80 ~-~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il  120 (307)
T COG1893          80 L-EEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL  120 (307)
T ss_pred             H-HHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE
Confidence            2 2332 5666777888776644333 22334555555555444

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.64  E-value=0.0073  Score=55.87  Aligned_cols=71  Identities=21%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hc----Cc---eec--CCHHhhcCcCCEEEEcCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET----GA---KFE--EDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~----g~---~~~--~~l~ell~~aDvVi~~~p  182 (304)
                      .+.++++.|+|.|..|++++..|...|+ +|.++||+..+.+... ..    +.   ...  .++++.+..+|+|+.++|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            4678999999999999999999998898 5899999764433222 11    11   111  112345667899999888


Q ss_pred             CC
Q 021995          183 LT  184 (304)
Q Consensus       183 ~~  184 (304)
                      ..
T Consensus       204 ~G  205 (283)
T PRK14027        204 MG  205 (283)
T ss_pred             CC
Confidence            54

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.62  E-value=0.004  Score=61.64  Aligned_cols=114  Identities=17%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCceecC--CHHhhcCcCCEEEEcC--CC-Chhh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEE--DLDTMLPKCDIVVVNT--PL-TEKT  187 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~--~l~ell~~aDvVi~~~--p~-~~~t  187 (304)
                      .+.+++|.|+|+|..|+++|+.|...|++|.++|++..... ...+.|+....  ...+.+.++|+|+..-  |. .+..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            57889999999999999999999999999999997543222 12345665432  2234567899887762  32 2211


Q ss_pred             h-------ccccHHHHhc-------C-CC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          188 R-------GMFDKDRIAK-------M-KK-GVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       188 ~-------~~i~~~~l~~-------m-k~-g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      .       .++.+-.+..       + .+ ..+-|--+-|+.-...-|.+.|+...
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1       1222222221       1 12 24555555788888888888887644

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.61  E-value=0.0046  Score=62.44  Aligned_cols=87  Identities=16%  Similarity=0.213  Sum_probs=60.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCH---Hh-hcCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DT-MLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l---~e-ll~~aDvVi~~~p~~~~t~~  189 (304)
                      .++-|+|+|++|+.+++.|+..|.+|++.|.++...+..++.|....    .+.   ++ -++++|.++++++.++++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            57899999999999999999999999999998766666666664321    122   21 25689999999987766544


Q ss_pred             cccHHHHhcCCCCCEEE
Q 021995          190 MFDKDRIAKMKKGVLIV  206 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilV  206 (304)
                      ++. . ...+.++..+|
T Consensus       498 iv~-~-~~~~~~~~~ii  512 (558)
T PRK10669        498 IVA-S-AREKRPDIEII  512 (558)
T ss_pred             HHH-H-HHHHCCCCeEE
Confidence            432 2 23334454554

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.60  E-value=0.013  Score=51.98  Aligned_cols=92  Identities=27%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh-----cCcCCEEEEcCCCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM-----LPKCDIVVVNTPLT  184 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~el-----l~~aDvVi~~~p~~  184 (304)
                      ..|++|.|.|.|.+|+.+++.++..|.+|++.+++....+..++.|....     .+..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            36789999999999999999999999999999886544444444443211     011111     24578888777632


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      .     .....+..|+++..+++++..
T Consensus       213 ~-----~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         213 E-----TLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             H-----HHHHHHHhcccCCEEEEEccC
Confidence            1     124567778888888888754

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK04148 hypothetical protein; Provisional

Probab=96.59  E-value=0.0046  Score=50.73  Aligned_cols=69  Identities=13%  Similarity=0.136  Sum_probs=52.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhcCcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~~aDvVi~~~p~~~  185 (304)
                      .++++..||+| -|..+|..|...|++|++.|.++...+.+++.+....     +.-.++-+.+|+|-..-|..+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e   89 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD   89 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence            56799999999 9999999999999999999998766665666554321     222367788999887777443

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.57  E-value=0.012  Score=54.41  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=56.5

Q ss_pred             CEEEEEeeChhhHHHHHHhc-cCCCeEE-EEcCCCCC--hhHHHhcCce-ecCCHHhhcC--cCCEEEEcCCCChhhhcc
Q 021995          118 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~-~~G~~V~-~~dr~~~~--~~~~~~~g~~-~~~~l~ell~--~aDvVi~~~p~~~~t~~~  190 (304)
                      .+|||||.|.||+.++..+. .-++++. ++|+++.+  ...++++|+. .+.+.+++++  +.|+|++++|.....   
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~---   78 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA---   78 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence            37999999999998876555 4467765 56776644  2456667764 3457888885  578899999854321   


Q ss_pred             ccHHHHhcCCCCCEEEEcC
Q 021995          191 FDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~  209 (304)
                        +.....++.|..+++-.
T Consensus        79 --e~a~~al~aGk~VIdek   95 (285)
T TIGR03215        79 --RHARLLAELGKIVIDLT   95 (285)
T ss_pred             --HHHHHHHHcCCEEEECC
Confidence              22233345565564443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.55  E-value=0.0044  Score=57.31  Aligned_cols=96  Identities=22%  Similarity=0.249  Sum_probs=71.8

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------------------------CCHH
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------------------EDLD  168 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------------------------~~l~  168 (304)
                      -...+.++.++|+|-+|-..+-..+..|+-|..+|-.+...+..+..|.+..                        +-+.
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            3567788999999999999999999999999999876544343333332110                        1134


Q ss_pred             hhcCcCCEEEEc--CCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          169 TMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       169 ell~~aDvVi~~--~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +..++.|+|+.+  .|..+. ..++.++..+.||||+++||.+
T Consensus       240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            568899999876  465544 4688899999999999999986

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=96.54  E-value=0.027  Score=52.23  Aligned_cols=149  Identities=17%  Similarity=0.269  Sum_probs=88.7

Q ss_pred             cchhhhccccceeeccccccchhchhHHH---hcC-CCcEEEEEeeecccCCCCcccHHHHHhCCc-EEEEcCCCC-hhH
Q 021995            2 AMKRVASSAINAFASSGFLRSSSRFSRHY---ASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGL-TVAEVTGSN-VVS   75 (304)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI-~v~n~~g~~-~~~   75 (304)
                      ||+|.-.+-+|..-.+.-...+..+...+   ... ...=+|--+..|.-       ..++..-++ +|.|+.... ..+
T Consensus        67 A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa-------~~~a~~~~~~pvINaGDG~~qHP  139 (316)
T COG0540          67 AMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAA-------RLLAEFSGVNPVINAGDGSHQHP  139 (316)
T ss_pred             HHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHH-------HHHHHhcCCCceEECCCCCCCCc
Confidence            56666666666655222225555554443   332 33334443444443       224555566 688875432 222


Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEe---eChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG---~G~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      +  .++--++...+.+                    | .+.|++|+|+|   .|+..++.++.|+.||.+|..+.|....
T Consensus       140 T--Q~LLDl~TI~~~~--------------------G-~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~  196 (316)
T COG0540         140 T--QALLDLYTIREEF--------------------G-RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLL  196 (316)
T ss_pred             c--HHHHHHHHHHHHh--------------------C-CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhC
Confidence            1  2333334443321                    2 38999999999   8999999999999999999999986533


Q ss_pred             h-----hHHHhcC-c-eecCCHHhhcCcCCEEEEc
Q 021995          153 P-----QLEKETG-A-KFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       153 ~-----~~~~~~g-~-~~~~~l~ell~~aDvVi~~  180 (304)
                      .     +.....| . ...+..+|.++++|++.+.
T Consensus       197 ~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l  231 (316)
T COG0540         197 PPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML  231 (316)
T ss_pred             CchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence            3     2233332 2 3455666699999999664

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.54  E-value=0.0042  Score=54.97  Aligned_cols=91  Identities=23%  Similarity=0.230  Sum_probs=64.8

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH---hcCce---ecCCHHhhcCcCCEEEEcCCCCh
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAK---FEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~---~~g~~---~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ..+|.|++|.|||-|.+|..=++.|...|++|+++.+.. .++...   +.++.   ...+.++ +..+++|+.+++.. 
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~-   83 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE-   83 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH-
Confidence            347999999999999999999999999999999999865 222211   11111   1113333 44599999988743 


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                          -+|+..+..+++-.++||+.
T Consensus        84 ----~ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          84 ----ELNERIAKAARERRILVNVV  103 (210)
T ss_pred             ----HHHHHHHHHHHHhCCceecc
Confidence                34567777777778889884

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.53  E-value=0.014  Score=55.57  Aligned_cols=91  Identities=23%  Similarity=0.270  Sum_probs=66.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHh-cCceecCCH-H--------hhc--CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~-~g~~~~~~l-~--------ell--~~aDvVi~~~p  182 (304)
                      .+.+|.|+|.|.||...++.++.+|.. |++.|+++...+.+++ .+.....+. +        ++.  ..+|+++-|+.
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            344999999999999999999999965 7788998877888877 454422111 1        233  34999999987


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      .. .   . -.+.++.++++..++.+|-.
T Consensus       248 ~~-~---~-~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         248 SP-P---A-LDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CH-H---H-HHHHHHHhcCCCEEEEEecc
Confidence            22 2   1 25778889999999998843

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.52  E-value=0.062  Score=52.45  Aligned_cols=133  Identities=19%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             HHHhCCcEEEEcC-CCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee---ChhhHHH
Q 021995           57 AAAAAGLTVAEVT-GSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC---GRIGKLL  132 (304)
Q Consensus        57 ~~~~~gI~v~n~~-g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~---G~IG~~l  132 (304)
                      .++..+|+|.|.- |....++  .+|+=++.+.+++         |.        .+..+.|++|+++|-   +++.+++
T Consensus       199 ~A~~s~vPVINAgdg~~~HPt--QaLaDl~Ti~E~~---------g~--------~g~~l~G~kIa~vGD~~~~rv~~Sl  259 (429)
T PRK11891        199 FARATNLPVINGGDGPGEHPS--QALLDLYTIQREF---------SR--------LGKIVDGAHIALVGDLKYGRTVHSL  259 (429)
T ss_pred             HHHhCCCCEEECCCCCCCCcH--HHHHHHHHHHHHh---------Cc--------cCCCcCCCEEEEECcCCCChHHHHH
Confidence            4566789999986 4332221  1233333333321         11        122488999999998   5899999


Q ss_pred             HHHhccC-CCeEEEEcCCCC-C-hhH---HHhcC--ceecCCHHhhcCcCCEEEEcCCCChh----------hhccccHH
Q 021995          133 LQRLKPF-NCNLLYHDRVKM-D-PQL---EKETG--AKFEEDLDTMLPKCDIVVVNTPLTEK----------TRGMFDKD  194 (304)
Q Consensus       133 A~~l~~~-G~~V~~~dr~~~-~-~~~---~~~~g--~~~~~~l~ell~~aDvVi~~~p~~~~----------t~~~i~~~  194 (304)
                      +..+..+ |++|.+..|... . .+.   +++.|  +...+++++.++++|+|....-..+.          ....++++
T Consensus       260 ~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~e  339 (429)
T PRK11891        260 VKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQA  339 (429)
T ss_pred             HHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHH
Confidence            9988876 999999887542 2 221   22234  34568999999999999875421110          01235666


Q ss_pred             HHhc-CCCCCEEEEc
Q 021995          195 RIAK-MKKGVLIVNN  208 (304)
Q Consensus       195 ~l~~-mk~g~ilVn~  208 (304)
                      .++. .|++++|..+
T Consensus       340 ll~~~ak~dai~MHc  354 (429)
T PRK11891        340 LVDAVCKPDTLIMHP  354 (429)
T ss_pred             HHhCccCCCcEEECC
Confidence            7766 6777766654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.52  E-value=0.01  Score=59.68  Aligned_cols=71  Identities=21%  Similarity=0.243  Sum_probs=47.7

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCce--ecCCHHhh-cCcCCEEEEcCCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAK--FEEDLDTM-LPKCDIVVVNTPLT  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~--~~~~l~el-l~~aDvVi~~~p~~  184 (304)
                      .+.++++.|+|.|.+|++++..|...|++|++++|+..+.+.. ...+..  ...++.+. ...+|+|+.++|..
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG  450 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence            5778999999999999999999999999999999975332222 222211  11222222 23467777777643

>PLN02527 aspartate carbamoyltransferase

Probab=96.52  E-value=0.022  Score=53.33  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=65.3

Q ss_pred             ccCCCEEEEEeeC---hhhHHHHHHhccC-CCeEEEEcCCCC-C-hhH---HHhcCc--eecCCHHhhcCcCCEEEEcCC
Q 021995          114 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM-D-PQL---EKETGA--KFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       114 ~L~g~~vgIIG~G---~IG~~lA~~l~~~-G~~V~~~dr~~~-~-~~~---~~~~g~--~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+.|.+|+++|-+   ++.++++..+..+ |++|.+..|... . .+.   +++.|.  ...+++++.++++|+|....-
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~  227 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI  227 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence            4789999999975   6899999988887 999998887542 2 222   222243  346799999999999988542


Q ss_pred             CCh------h-h-----hccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTE------K-T-----RGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~------~-t-----~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..+      . .     ...++++.++.++++++|..+.
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl  266 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL  266 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence            111      0 1     1345666777777777766553

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.51  E-value=0.019  Score=52.57  Aligned_cols=106  Identities=20%  Similarity=0.259  Sum_probs=63.1

Q ss_pred             CEEEEEe-eChhhHHHHHHhcc-CCCeEE-EEcCCCCCh---hHHH-----hcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP---QLEK-----ETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~---~~~~-----~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .+|+|+| +|.||+.+++.+.. -++++. ++|+.....   ....     ..++..+.+++++...+|+|+.+.|....
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~~   81 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEGV   81 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHHH
Confidence            3899999 69999999998874 588865 577432111   1111     13455567888886679999998863211


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHI  228 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i  228 (304)
                           .......++.|.-+|-...|-.. +.+.|.++.++..+
T Consensus        82 -----~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~  119 (266)
T TIGR00036        82 -----LNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI  119 (266)
T ss_pred             -----HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence                 12333445556555554445433 23334555455433

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.50  E-value=0.0073  Score=56.70  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc--------Ccee-cCCHHhhcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAKF-EEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~--------g~~~-~~~l~ell~~aDvVi~~~p~  183 (304)
                      .+++|+|||.|.+|..+|..+...|.  ++..+|++....+ ...++        .... ..+. +.+++||+|+++.-.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            56799999999999999999987777  7999998654321 11111        1111 1233 558999999997643


Q ss_pred             --Ch-hhh--------cccc--HHHHhcCCCCCEEEEcCC
Q 021995          184 --TE-KTR--------GMFD--KDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 --~~-~t~--------~~i~--~~~l~~mk~g~ilVn~~r  210 (304)
                        .+ .++        .++.  .+.+....+++++|+++-
T Consensus        84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence              21 111        1111  112222346889999984

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.50  E-value=0.026  Score=55.12  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCc-CCEEEEcC--CCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--PLT  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~----~~~~~~g~~~~--~~l~ell~~-aDvVi~~~--p~~  184 (304)
                      ++.|+++.|+|.|.+|.++|+.|...|++|+++|++....    +.....|+...  ....+++.. +|+|+...  |.+
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            3678999999999999999999999999999999754221    22334455432  223344454 89887754  322


Q ss_pred             -hhh-------hccccH-HHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          185 -EKT-------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       185 -~~t-------~~~i~~-~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                       +..       ..++.+ +++..+ +...+-|--+.|+.-...-+...|+...
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence             210       112322 232333 3345556666788888888888887543

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.50  E-value=0.009  Score=55.82  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-C----C---HHhhcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----D---LDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-~----~---l~ell~--~aDvVi~~~p~~  184 (304)
                      .|.+|.|+|.|.+|..+++.++.+|++ |++.+++..+.+.++++|+..+ .    +   +.++..  ..|+++-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            489999999999999999999999999 9999887666666667775321 1    1   112222  478888776532


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ..     ....+..++++..++.++.
T Consensus       243 ~~-----~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         243 AA-----RRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             HH-----HHHHHHHhhcCCEEEEEcC
Confidence            11     1355677888888887764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK11579 putative oxidoreductase; Provisional

Probab=96.48  E-value=0.0094  Score=56.43  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=46.3

Q ss_pred             CEEEEEeeChhhHH-HHHHhcc-CCCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~-~G~~V~-~~dr~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+. .+..++. -++++. ++|++...  ....+ +...+++++++++  +.|+|++++|...
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~   76 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK--VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT   76 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH--HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            48999999999984 5665554 478876 57775422  22233 3455689999996  5799999999643

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.48  E-value=0.019  Score=54.51  Aligned_cols=112  Identities=18%  Similarity=0.259  Sum_probs=67.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccC----------CCeEE-EEcCCC-------CChhHH----HhcCc-e------ecCCHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVK-------MDPQLE----KETGA-K------FEEDLD  168 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~----------G~~V~-~~dr~~-------~~~~~~----~~~g~-~------~~~~l~  168 (304)
                      .+|||+|+|.||+.+++.+...          +.+|. ++|++.       ...+..    ...+. .      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            3799999999999999998644          56755 556432       112111    11121 1      123778


Q ss_pred             hhc--CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch-hchHHHHHHHHcCCce
Q 021995          169 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  229 (304)
Q Consensus       169 ell--~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~aL~~g~i~  229 (304)
                      +++  .+.|+|+.++|....+...--.-....|+.|.-+|-...+.+ ...++|.++.++....
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            887  468999999986543222212233566777877776544443 2456777777776554

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.47  E-value=0.014  Score=55.41  Aligned_cols=90  Identities=13%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec---C---CHHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~---~---~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|.|.|.+|..+++.++.+|.+|++.+.+... .+.++++|+...   .   .+.+.....|+++-++.....  
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~--  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHA--  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHH--
Confidence            6889999999999999999999999998887765433 234456676321   1   123333457888877652211  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                        + .+.++.++++..+|.++.
T Consensus       261 --~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 --L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             --H-HHHHHHhcCCcEEEEeCC
Confidence              1 456778899999988864

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.46  E-value=0.0075  Score=61.78  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHH----hhcCcCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD----TMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~----ell~~aDvVi~~~p~~~~t~  188 (304)
                      ..+|-|+|+|++|+.+++.|.+.|.++++.|.++...+..++.|...+    .+.+    .-++++|.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            468999999999999999999999999999988766666666665321    2222    23568999999998766654


Q ss_pred             ccccHHHHhcCCCCCEEEE
Q 021995          189 GMFDKDRIAKMKKGVLIVN  207 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn  207 (304)
                      .++  ...+.+.|+..++-
T Consensus       480 ~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             HHH--HHHHHhCCCCeEEE
Confidence            442  34444555544543

>PRK12862 malic enzyme; Reviewed

Probab=96.43  E-value=0.042  Score=57.45  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             CCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995           61 AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN  140 (304)
Q Consensus        61 ~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G  140 (304)
                      .+|+|.|.. .  .-+|--+++.+++.+|-                    .++.|...+|.|.|.|..|-.+++.|...|
T Consensus       160 ~~ip~f~DD-~--~GTa~v~la~l~~a~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G  216 (763)
T PRK12862        160 MKIPVFHDD-Q--HGTAIIVAAALLNGLKL--------------------VGKDIEDVKLVASGAGAAALACLDLLVSLG  216 (763)
T ss_pred             CCCceEecC-c--ccHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcC
Confidence            369999984 2  34566678888888883                    245789999999999999999999999889


Q ss_pred             C---eEEEEcCCCC------------ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEE
Q 021995          141 C---NLLYHDRVKM------------DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI  205 (304)
Q Consensus       141 ~---~V~~~dr~~~------------~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~il  205 (304)
                      .   +++.+|+...            +...++..   ...+|+|+++.+|+++=+.-     .+++.++.++.|.+..++
T Consensus       217 ~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~pii  288 (763)
T PRK12862        217 VKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPLI  288 (763)
T ss_pred             CCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCEE
Confidence            8   6889996531            11112221   23589999999999875432     379999999999999999


Q ss_pred             EEcCCCch
Q 021995          206 VNNARGAI  213 (304)
Q Consensus       206 Vn~~rg~~  213 (304)
                      .-.|....
T Consensus       289 falsNP~~  296 (763)
T PRK12862        289 FALANPTP  296 (763)
T ss_pred             EeCCCCcc
Confidence            99998885

>PRK10206 putative oxidoreductase; Provisional

Probab=96.42  E-value=0.0072  Score=57.33  Aligned_cols=67  Identities=19%  Similarity=0.213  Sum_probs=46.7

Q ss_pred             EEEEEeeChhhHH-HHHHh-cc-CCCeEE-EEcCCCCChhHHHhcC-ceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          119 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       119 ~vgIIG~G~IG~~-lA~~l-~~-~G~~V~-~~dr~~~~~~~~~~~g-~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      ++||||+|.+++. .+..+ .. -++++. ++|+++...+...+++ ...+++++++++  +.|+|++++|...
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~   76 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS   76 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            7999999998753 34434 32 367865 6888654444444554 456678999996  5799999999653

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.41  E-value=0.0052  Score=48.79  Aligned_cols=100  Identities=21%  Similarity=0.316  Sum_probs=60.7

Q ss_pred             eeChhhHHHHHHhccC----CCeEE-EEcCC--CCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccccHH
Q 021995          124 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       124 G~G~IG~~lA~~l~~~----G~~V~-~~dr~--~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      |+|.||+.+++.+...    +++|. +++++  ..........+.....++++++.  ..|+|+=|.+..+.     .+-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-----~~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-----AEY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-----HHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-----HHH
Confidence            8999999999999764    67755 66765  11111112223345678999998  89999988654322     233


Q ss_pred             HHhcCCCCCEEEEcCCCchh---chHHHHHHHHcCCc
Q 021995          195 RIAKMKKGVLIVNNARGAIM---DTQAVVDACSSGHI  228 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~v---d~~aL~~aL~~g~i  228 (304)
                      ..+.|+.|.-+|-.+-+.+.   ..+.|.++.+++..
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            45667889999999988888   33344454444443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.40  E-value=0.0096  Score=58.64  Aligned_cols=113  Identities=19%  Similarity=0.179  Sum_probs=73.8

Q ss_pred             cCCCEEEEEeeChhhHH-HHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcC--CC-Chhhh
Q 021995          115 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNT--PL-TEKTR  188 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~-lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~-~~l~ell~~aDvVi~~~--p~-~~~t~  188 (304)
                      .++++|.|+|+|..|.+ +|+.|+..|++|.++|..... .+...+.|+... ..-.+.+.++|+|+..-  |. ++...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 799999999999999975432 122334465442 12234567899987753  32 22221


Q ss_pred             -------ccccH-HHHhcC-CC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          189 -------GMFDK-DRIAKM-KK-GVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       189 -------~~i~~-~~l~~m-k~-g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                             .++.+ +++..+ ++ ..+-|--+.|+.-...-+.+.|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   23333 343333 32 35566666799888888888887654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.40  E-value=0.007  Score=56.58  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=46.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhcC-ce--------ecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKETG-AK--------FEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~g-~~--------~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||.|.+|..+|..|...|  .+|..+|++....+ .+.++. ..        ...+. +.+++||+++++.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            37999999999999999998888  57999998764332 122111 11        11344 558999999999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.40  E-value=0.0098  Score=55.62  Aligned_cols=68  Identities=26%  Similarity=0.340  Sum_probs=50.5

Q ss_pred             CEEEEEeeChhhH-HHHHHhccCC--Ce-EEEEcCCCCC-hhHHHhcCce-ecCCHHhhcCc--CCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKMD-PQLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~-~lA~~l~~~G--~~-V~~~dr~~~~-~~~~~~~g~~-~~~~l~ell~~--aDvVi~~~p~~~  185 (304)
                      .+|||||+|.+++ ..+..+...+  ++ |.++|+++.. ...++++++. .+.+++++++.  .|+|++++|...
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~   79 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL   79 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh
Confidence            5899999997764 5777777765  35 5577887744 3455667763 67799999987  589999999654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.39  E-value=0.01  Score=56.80  Aligned_cols=67  Identities=25%  Similarity=0.378  Sum_probs=53.5

Q ss_pred             cCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--CceecCCHHhhcCcCCEEEEcCC
Q 021995          115 LEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      |.||+|||+|+          ..-...++++|+..|++|.+|||...  +.+...  ++.+..++++++++||+++++..
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~--~~~~~~~~~~~~~~~~~~~~~~aDaivi~te  385 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM--ENAFRNFPDVELESDAEEALKGADAIVINTE  385 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh--HHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence            88999999997          35577889999999999999998542  222221  35778899999999999999876


Q ss_pred             C
Q 021995          183 L  183 (304)
Q Consensus       183 ~  183 (304)
                      .
T Consensus       386 w  386 (414)
T COG1004         386 W  386 (414)
T ss_pred             H
Confidence            4

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.39  E-value=0.02  Score=55.57  Aligned_cols=89  Identities=26%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             ccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995          114 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       114 ~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+|||.-.... ....  ....++++.++++|+|+++.+.
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~~--~~~~~~~~~~~~ad~~v~~t~~  386 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKGL--PLIDDLEEALKGADALVILTDH  386 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhhc--ccCCCHHHHHhCCCEEEEecCC
Confidence            478999999997          45678999999999999999998643222 2222  2246888999999999999875


Q ss_pred             ChhhhccccHHHHh-cCCCCCEEEEc
Q 021995          184 TEKTRGMFDKDRIA-KMKKGVLIVNN  208 (304)
Q Consensus       184 ~~~t~~~i~~~~l~-~mk~g~ilVn~  208 (304)
                      .+ .+. ++-+.+. .|+ ..+++|.
T Consensus       387 ~~-~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       387 DE-FKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HH-Hhc-cCHHHHHHhcC-CCEEEeC
Confidence            43 222 3444444 344 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.39  E-value=0.017  Score=54.11  Aligned_cols=113  Identities=14%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhc----------CceecCCHHhhcCcCCEEEEcCCC-
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTPL-  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~----------g~~~~~~l~ell~~aDvVi~~~p~-  183 (304)
                      .+|+|||.|.+|..+|..|...|  -++..+|.+....+ .+.++          .+....+.++ +++||+|+++.-. 
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence            48999999999999999886555  46999998653221 11111          1122245554 8999999997542 


Q ss_pred             -Ch-hhhc-cc--cH-------HHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          184 -TE-KTRG-MF--DK-------DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       184 -~~-~t~~-~i--~~-------~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                       .+ .++. ++  |.       +.+....+++++|+++..-=+-...+.+.  +...++.|.
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence             21 1221 11  11       22333478899999984433333333333  444555555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.38  E-value=0.013  Score=56.20  Aligned_cols=89  Identities=17%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|.|.|.+|..+++.++.+|.+|++.+++... .+.++++|+...   .+   +.+.....|+++-++.....  
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~--  255 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA--  255 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence            5889999999999999999999999999888765432 345556666322   11   22233456888877642211  


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                         -.+.++.++++..++.++
T Consensus       256 ---~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        256 ---LLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             ---HHHHHHhhcCCCEEEEEc
Confidence               135566778888888776

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.38  E-value=0.081  Score=55.15  Aligned_cols=126  Identities=13%  Similarity=0.103  Sum_probs=94.2

Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC
Q 021995           60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF  139 (304)
Q Consensus        60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~  139 (304)
                      +.+|+|.|.. .  .-+|--+++.+++.+|-                    .+..+...+|.|.|.|..|-.+++.|...
T Consensus       151 ~~~ip~f~DD-~--~GTa~v~lA~l~na~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~  207 (752)
T PRK07232        151 RMDIPVFHDD-Q--HGTAIISAAALLNALEL--------------------VGKKIEDVKIVVSGAGAAAIACLNLLVAL  207 (752)
T ss_pred             hcCCCeeccc-c--chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECccHHHHHHHHHHHHc
Confidence            3479999874 2  44566678888888883                    24578899999999999999999999988


Q ss_pred             CC---eEEEEcCCCC----C---hhHHH-hcCc-eecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEE
Q 021995          140 NC---NLLYHDRVKM----D---PQLEK-ETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN  207 (304)
Q Consensus       140 G~---~V~~~dr~~~----~---~~~~~-~~g~-~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn  207 (304)
                      |.   +++.+|+...    .   ....+ .+-. ....+|+|+++.+|+++=..     +.+++.++.++.|.+..++.-
T Consensus       208 G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifa  282 (752)
T PRK07232        208 GAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADNPIIFA  282 (752)
T ss_pred             CCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEe
Confidence            88   6889987631    0   01111 1110 22358999999999887432     137999999999999999999


Q ss_pred             cCCCch
Q 021995          208 NARGAI  213 (304)
Q Consensus       208 ~~rg~~  213 (304)
                      .+....
T Consensus       283 lsNP~~  288 (752)
T PRK07232        283 LANPDP  288 (752)
T ss_pred             cCCCCc
Confidence            999886

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.37  E-value=0.026  Score=53.11  Aligned_cols=90  Identities=13%  Similarity=0.140  Sum_probs=61.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i  191 (304)
                      .|.+|.|+|.|.+|...++.++. +| .+|++.++++.+.+.++..+....  .+++..  ..|+|+-++... .+...+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~-~~~~~~  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGR-GSQSAI  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCC-ccHHHH
Confidence            58899999999999999988875 54 679999987766666655444321  222222  479998887631 011112


Q ss_pred             cHHHHhcCCCCCEEEEcC
Q 021995          192 DKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~  209 (304)
                       .+.++.++++..++.++
T Consensus       240 -~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         240 -NQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             -HHHHHhCcCCcEEEEEe
Confidence             46778899999988876

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.35  E-value=0.0096  Score=56.14  Aligned_cols=90  Identities=14%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----C----CHHhhcC------cCC----EE
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----E----DLDTMLP------KCD----IV  177 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~----~l~ell~------~aD----vV  177 (304)
                      .|.+|.|+|.|.+|..+++.++..|.+|++.++++...+.++++|+...    +    ++.+.+.      ..|    ++
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v  245 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI  245 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence            5889999999999999999999999999999887766666667775321    0    1111111      233    56


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +-+......     ....++.++++..++.++.
T Consensus       246 ~d~~g~~~~-----~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       246 FECSGSKPG-----QESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             EECCCChHH-----HHHHHHHHhcCCeEEEECc
Confidence            655543211     1345677788888888775

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.34  E-value=0.012  Score=63.33  Aligned_cols=69  Identities=16%  Similarity=0.278  Sum_probs=47.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccC-CCe-------------EEEEcCCCCChhHH-Hhc-Cc---ee-cCCHHh---hcC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQLE-KET-GA---KF-EEDLDT---MLP  172 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~-G~~-------------V~~~dr~~~~~~~~-~~~-g~---~~-~~~l~e---ll~  172 (304)
                      ..++|+|||.|.||+.+++.|... +++             |.+.|++....+.. +.. ++   .. +.+.++   +++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            467999999999999999999653 334             88889876433322 222 31   22 335444   447


Q ss_pred             cCCEEEEcCCCC
Q 021995          173 KCDIVVVNTPLT  184 (304)
Q Consensus       173 ~aDvVi~~~p~~  184 (304)
                      ++|+|++++|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999963

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.33  E-value=0.01  Score=59.11  Aligned_cols=116  Identities=18%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHhc--Cceec--CCHHhhcCcCCEEEEc--CCCC-
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN--TPLT-  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~~--g~~~~--~~l~ell~~aDvVi~~--~p~~-  184 (304)
                      ++.+++|.|+|+|..|.++|+.|+..|++|.++|......  +.....  |+...  ....+.+.++|+|+..  +|.+ 
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~   83 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE   83 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence            3578899999999999999999999999999999754321  112233  33321  1123556789999886  3432 


Q ss_pred             ----hhh-------hccc-cHHHHhc-C--------CCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          185 ----EKT-------RGMF-DKDRIAK-M--------KKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       185 ----~~t-------~~~i-~~~~l~~-m--------k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                          |..       ..++ ..+.+.. +        ++..+-|--+-|+.-...-|.+.|+.....
T Consensus        84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence                211       1122 1222221 2        123455555678888888888888765443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.33  E-value=0.028  Score=54.98  Aligned_cols=113  Identities=21%  Similarity=0.290  Sum_probs=70.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-h----hHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P----QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~----~~~~~~g~~~--~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .+.++++.|+|.|.+|..+|+.|...|++|+++|++... .    +.....|...  .+..++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            368899999999999999999999999999999986421 1    1112234432  22334556789999887543322


Q ss_pred             hhcc----------cc-HHHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          187 TRGM----------FD-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       187 t~~~----------i~-~~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ...+          +. .+.+.. .+...+-|--+.|+.-...-|...|...
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            2111          11 112222 2323444555578888888788888653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.32  E-value=0.035  Score=51.44  Aligned_cols=105  Identities=14%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh--------
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR--------  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~--------  188 (304)
                      |++++|||--.--..+++.|...|++|..|.-...... .  .|+...+..++.++++|+|++=+|.+.+..        
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~   77 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN   77 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence            67999999999999999999999999887764211111 1  155555566777999999999999765421        


Q ss_pred             --ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          189 --GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       189 --~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                        -.++++.+++|+++++ +-+|    ++..++.++.++..|.
T Consensus        78 ~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        78 EKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             CCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence              1257889999998665 3444    4556666677777776

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12861 malic enzyme; Reviewed

Probab=96.28  E-value=0.047  Score=56.87  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=93.2

Q ss_pred             CcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCC
Q 021995           62 GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC  141 (304)
Q Consensus        62 gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~  141 (304)
                      .|+|.|.. .  .-+|=-+++.+|+.+|-                    .+..|...+|.|.|.|..|..+++.+...|.
T Consensus       157 ~ipvf~DD-~--qGTa~v~lA~llnal~~--------------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~  213 (764)
T PRK12861        157 KIPVFHDD-Q--HGTAITVSAAFINGLKV--------------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGL  213 (764)
T ss_pred             CCCeeccc-c--chHHHHHHHHHHHHHHH--------------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCC
Confidence            79999974 2  34566678888988883                    2457889999999999999999999998898


Q ss_pred             ---eEEEEcCCC-----C----C---hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE
Q 021995          142 ---NLLYHDRVK-----M----D---PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  206 (304)
Q Consensus       142 ---~V~~~dr~~-----~----~---~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV  206 (304)
                         +++.+|+..     .    .   .+.++..   ...+|.|+++.+|+++=+.     ..+++.++.++.|.+..++.
T Consensus       214 ~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~advliG~S-----~~g~ft~e~v~~Ma~~PIIF  285 (764)
T PRK12861        214 PVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADVFLGLS-----AGGVLKAEMLKAMAARPLIL  285 (764)
T ss_pred             ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCEEEEcC-----CCCCCCHHHHHHhccCCEEE
Confidence               689999653     1    1   1122221   2358999999999886432     13799999999999999999


Q ss_pred             EcCCCch
Q 021995          207 NNARGAI  213 (304)
Q Consensus       207 n~~rg~~  213 (304)
                      =.|....
T Consensus       286 aLsNPtp  292 (764)
T PRK12861        286 ALANPTP  292 (764)
T ss_pred             ECCCCCc
Confidence            9998875

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.28  E-value=0.0043  Score=52.59  Aligned_cols=63  Identities=16%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             EEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCC
Q 021995          120 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       120 vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~~  184 (304)
                      |.|+|. |.+|+.+++.|...|++|+++.|++.+.+.  ..+++.       .+++.+.++.+|.|+.+++..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence            678995 999999999999999999999997654332  223221       134567788999999998644

...

>PRK05086 malate dehydrogenase; Provisional

Probab=96.26  E-value=0.02  Score=53.74  Aligned_cols=95  Identities=25%  Similarity=0.310  Sum_probs=58.5

Q ss_pred             CEEEEEee-ChhhHHHHHHhc---cCCCeEEEEcCCCCCh----hHHH-h--cCcee--cCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDP----QLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~---~~G~~V~~~dr~~~~~----~~~~-~--~g~~~--~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||. |.+|+.++..+.   ..+.++..+|+++...    +... .  ..+..  .+++.+.++++|+|++|.-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999997773   4566889999865321    1111 1  01111  246667889999999987532


Q ss_pred             hh---hh-cc------ccHHHHhcC---CCCCEEEEcCCCc
Q 021995          185 EK---TR-GM------FDKDRIAKM---KKGVLIVNNARGA  212 (304)
Q Consensus       185 ~~---t~-~~------i~~~~l~~m---k~g~ilVn~~rg~  212 (304)
                      ..   ++ .+      +-++..+.|   .+.+++++++..-
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            11   01 11      112333333   5778999998654

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.26  E-value=0.1  Score=49.91  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=49.8

Q ss_pred             ccCCCEEEEEeeC--------hhhHHHHHHhccCCCeEEEEcCCCC--ChhH-------HHhcCc--eecCCHHhhcCcC
Q 021995          114 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC  174 (304)
Q Consensus       114 ~L~g~~vgIIG~G--------~IG~~lA~~l~~~G~~V~~~dr~~~--~~~~-------~~~~g~--~~~~~l~ell~~a  174 (304)
                      .|.|++|+|+|.|        ++.++++..+..+|++|.+..|...  ..+.       +++.|.  ...+++++.++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999853        4457788888899999999988642  2222       123443  3568999999999


Q ss_pred             CEEEEcC
Q 021995          175 DIVVVNT  181 (304)
Q Consensus       175 DvVi~~~  181 (304)
                      |+|....
T Consensus       247 Dvvyt~~  253 (357)
T TIGR03316       247 DIVYPKS  253 (357)
T ss_pred             CEEEECC
Confidence            9998763

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.25  E-value=0.012  Score=55.91  Aligned_cols=90  Identities=17%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHH----hhcC-cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP-KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell~-~aDvVi~~~p~~  184 (304)
                      .|++|.|.|.|.+|..+++.++..|+ +|++.++++.+.+.++++|+...     .++.    ++.. ..|+++-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            57899999999999999999999999 59899887766677777776321     1111    1111 478888777532


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +.     -...++.++++..+|.++-
T Consensus       271 ~~-----~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 PA-----LETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             HH-----HHHHHHHHhcCCEEEEEcc
Confidence            21     1355677888888888763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.25  E-value=0.012  Score=54.53  Aligned_cols=87  Identities=13%  Similarity=0.035  Sum_probs=57.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      .|+++.|+|.|.+|...++.++.+|++ |.+.+++....+.+....+  ...-++.-...|+++-++....    .+ ..
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~----~~-~~  216 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPS----LI-DT  216 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHH----HH-HH
Confidence            577899999999999999999999998 5566664433333322221  1111112235788888776321    11 45


Q ss_pred             HHhcCCCCCEEEEcC
Q 021995          195 RIAKMKKGVLIVNNA  209 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~  209 (304)
                      .++.++++..++.+|
T Consensus       217 ~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       217 LVRRLAKGGEIVLAG  231 (308)
T ss_pred             HHHhhhcCcEEEEEe
Confidence            678889999988876

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.23  E-value=0.014  Score=55.16  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=63.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~  183 (304)
                      .|++|.|.|.|.+|..+++.++.+|.+ |++.+++....+.++++|+..+     .+.    .++..  ..|+++-++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            588999999999999999999999995 8888887766677777775321     111    12222  47888877653


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ...    + ...+..++++..+|.++-
T Consensus       256 ~~~----~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       256 PET----Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             HHH----H-HHHHHHhccCCEEEEECC
Confidence            211    1 345677788888888764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.22  E-value=0.018  Score=53.87  Aligned_cols=90  Identities=20%  Similarity=0.248  Sum_probs=64.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .|.++.|.|.|.+|+.+++.++.+|++|++.+++....+.+.++|+..+   .+   .++.-...|+++-+.+...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            5779999999999999999999999999999887655566666665321   11   1122345788887776431    


Q ss_pred             cccHHHHhcCCCCCEEEEcCC
Q 021995          190 MFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       ...+.++.++++..+++++.
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEec
Confidence             12566777888888888864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.20  E-value=0.036  Score=54.39  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH----HHhcCceec--CCHHhhcCcCCEEEEc--CCCChh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL----EKETGAKFE--EDLDTMLPKCDIVVVN--TPLTEK  186 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~----~~~~g~~~~--~~l~ell~~aDvVi~~--~p~~~~  186 (304)
                      ..+++|.|+|+|.-|.++++.|...|++|+++|.++.+...    ....++...  .-..+....+|+|+..  +|.+..
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p   84 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP   84 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence            44999999999999999999999999999999976644111    112333221  1112567889999886  333221


Q ss_pred             -h-------hccc-cHHHHhcC-CCC-CEEEEcCCCchhchHHHHHHHHc--------CCceEEEeecCCCC
Q 021995          187 -T-------RGMF-DKDRIAKM-KKG-VLIVNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQ  239 (304)
Q Consensus       187 -t-------~~~i-~~~~l~~m-k~g-~ilVn~~rg~~vd~~aL~~aL~~--------g~i~ga~lDV~~~e  239 (304)
                       .       ..++ +-+++-+. ++. .+-|--+.|+.-.+.-+...|++        |.|...++|+.+++
T Consensus        85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~  156 (448)
T COG0771          85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA  156 (448)
T ss_pred             HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence             0       0122 22334443 123 44455556887777777777766        45677788888763

>PLN02740 Alcohol dehydrogenase-like

Probab=96.19  E-value=0.015  Score=55.62  Aligned_cols=90  Identities=17%  Similarity=0.116  Sum_probs=61.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C----CHHh----hcC-cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDT----MLP-KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~----~l~e----ll~-~aDvVi~~~p  182 (304)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.++++...+.++++|+...   .    ++.+    +.. ..|+++-++.
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G  277 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG  277 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 59999987777777777775321   1    1222    121 4788877765


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ....     -.+.+..++++ ..++.++-
T Consensus       278 ~~~~-----~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        278 NVEV-----LREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             ChHH-----HHHHHHhhhcCCCEEEEEcc
Confidence            3211     13555667665 66666653

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.14  E-value=0.024  Score=55.40  Aligned_cols=108  Identities=17%  Similarity=0.183  Sum_probs=64.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccC----------CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~----------G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      .+|||+|+|.+|+.+++.+...          +.+|. +++++..........+...+.++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4899999999999998877432          45644 5677543322111122345578899985  479999887653


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  229 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~  229 (304)
                      ....    .-..+.|+.|.-+|..--+... .-+.|.++.++....
T Consensus        84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            2211    2223556677666644332222 336677777666654

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.11  E-value=0.015  Score=50.11  Aligned_cols=66  Identities=14%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||. |.+|+.+++-++..|++|+++-|++.+....+..     .+.-.+++.+.+...|+|+.+...
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            58999995 9999999999999999999999987443321111     111123445788999999987643

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.013  Score=57.96  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=72.7

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-----hhHHHhcCceec--CCHHhhcCcCCEEEEcCC--
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-----PQLEKETGAKFE--EDLDTMLPKCDIVVVNTP--  182 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-----~~~~~~~g~~~~--~~l~ell~~aDvVi~~~p--  182 (304)
                      +..+.+++|.|||.|.+|.++|+.|+..|++|+++|+....     .+..++.|+...  ... +....+|+|+++.-  
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR   89 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence            34678999999999999999999999999999999965421     122334566442  111 24457999988753  


Q ss_pred             -CChhh-----hc--cccH-HHH-hcCCC----CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          183 -LTEKT-----RG--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       183 -~~~~t-----~~--~i~~-~~l-~~mk~----g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                       .++..     .+  ++.+ +++ ..+.+    ..+-|--+.|+.-...-+...|+...
T Consensus        90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence             33311     11  2222 333 33322    24556566788887777778887633

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.07  E-value=0.0059  Score=58.59  Aligned_cols=64  Identities=22%  Similarity=0.300  Sum_probs=44.2

Q ss_pred             EEEEeeChhhHHHHHHhccCC-C-eEEEEcCCCCChhHHHh--c--Cce-------ecCCHHhhcCcCCEEEEcCCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLEKE--T--GAK-------FEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G-~-~V~~~dr~~~~~~~~~~--~--g~~-------~~~~l~ell~~aDvVi~~~p~  183 (304)
                      |+|+|.|.+|+.+++.|...+ . +|++.||+..+.+...+  .  .+.       ..++++++++++|+|+.|+|.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999999999999998765 5 89999997654333322  1  111       113477899999999999974

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.03  E-value=0.031  Score=51.45  Aligned_cols=66  Identities=21%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++++.|+|.|..+++++..|...|+. |.+++|+..+.+.. ...+......+  ....+|+|+.|+|..
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G  189 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG  189 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence            57899999999999999999999985 99999986443332 22332211111  124589999999853

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.98  E-value=0.02  Score=53.15  Aligned_cols=89  Identities=22%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------~~l~ell-----~~aDvVi~~~p~  183 (304)
                      .|.+|.|.| .|.+|+.+++.++.+|++|++.+++..+.+.++++|+..+      +++.+.+     ...|+++-++..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence            578999999 5999999999999999999988877666666667775321      1232221     246888776652


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       +.    + .+.++.++++..+|..+.
T Consensus       218 -~~----~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       218 -EF----S-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             -HH----H-HHHHHHhCcCcEEEEecc
Confidence             11    1 567788899999988874

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.97  E-value=0.013  Score=54.54  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=47.3

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+..+.......+++.       .+++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4789999 599999999999999999999998753322222233321       2346678999999987654

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.97  E-value=0.025  Score=52.23  Aligned_cols=90  Identities=18%  Similarity=0.154  Sum_probs=62.7

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEcCCCChhhhcccc
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell--~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      -.|.+|.|.|.|.+|+.+++.++..|.+|++.+.++...+.++++|+....+..+..  ...|+++-+......     -
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~-----~  228 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSG-----L  228 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHH-----H
Confidence            357899999999999999999999999998888766556666667764332222211  347888877643211     1


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 021995          193 KDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~  209 (304)
                      ...++.++++..++..+
T Consensus       229 ~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         229 ELALRLVRPRGTVVLKS  245 (319)
T ss_pred             HHHHHHhhcCCEEEEEc
Confidence            45566778888777654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.95  E-value=0.026  Score=52.71  Aligned_cols=90  Identities=17%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh-h--cCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-M--LPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e-l--l~~aDvVi~~~p~~~~t  187 (304)
                      .|++|.|.|.|.+|+.+++.++.+|.+|++.+++....+.++++|+...     .++.+ +  +...|+++-+.....  
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~--  240 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK--  240 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence            5789999999999999999999999999999887655666666665321     11211 1  134677776543211  


Q ss_pred             hccccHHHHhcCCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                        . -...+..++++..+|+++.
T Consensus       241 --~-~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         241 --A-ISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             --H-HHHHHHHcccCCEEEEEec
Confidence              1 2455677788888887763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.94  E-value=0.028  Score=54.91  Aligned_cols=92  Identities=18%  Similarity=0.128  Sum_probs=59.5

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--Cceec----CC---H-HhhcCcCCEEEEcCCCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----ED---L-DTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--g~~~~----~~---l-~ell~~aDvVi~~~p~~  184 (304)
                      +..+++.|+|+|.+|+.+++.|...|.+|+++|+++...+...+.  +....    .+   | +.-+.++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            346889999999999999999999999999999876543333332  22111    12   2 12357899999888865


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEc
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      ..  +++-....+.+....+++-+
T Consensus       309 ~~--n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EA--NILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HH--HHHHHHHHHHhCCCeEEEEE
Confidence            43  33323333445554455433

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=95.91  E-value=0.022  Score=54.20  Aligned_cols=89  Identities=19%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHh----hc-CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDT----ML-PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~-------~l~e----ll-~~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++.+.+.++++|+...-       ++.+    +. ...|+++-++.
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  264 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG  264 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 799998877666667777753211       1111    11 14677777665


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~  209 (304)
                      ....     -.+.++.++++ ..++.++
T Consensus       265 ~~~~-----~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       265 NVNV-----MRAALECCHKGWGESIIIG  287 (368)
T ss_pred             CHHH-----HHHHHHHhhcCCCeEEEEe
Confidence            3211     13455666664 6666665

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=95.91  E-value=0.028  Score=50.75  Aligned_cols=91  Identities=18%  Similarity=0.104  Sum_probs=63.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcC-ceecCCHH-hh--cCcCCEEEEcCCCChhhhcc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g-~~~~~~l~-el--l~~aDvVi~~~p~~~~t~~~  190 (304)
                      .|.++.|.|.|.+|+.+++.++..|.+ |++.+++....+.+++.| ........ +.  -...|+++.++....    .
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~  172 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A  172 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence            578999999999999999999999999 988887665555556665 22111111 11  135888887765322    1


Q ss_pred             ccHHHHhcCCCCCEEEEcCCC
Q 021995          191 FDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg  211 (304)
                       -...+..++++..+++++-.
T Consensus       173 -~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         173 -LETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             -HHHHHHHhcCCcEEEEEecc
Confidence             25667888999999988754

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.91  E-value=0.0086  Score=49.52  Aligned_cols=65  Identities=18%  Similarity=0.233  Sum_probs=44.9

Q ss_pred             CEEEEEee-ChhhHHHHHHhc--cCCCeEEEEcCCCCChh-HHHhc---------CceecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLK--PFNCNLLYHDRVKMDPQ-LEKET---------GAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~--~~G~~V~~~dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+|+|||. |.+|+.+|..|.  .++-++..+|++....+ .+.++         .........+.+++||+|+++..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            48999999 999999999886  45568999998642111 11111         11222355678899999999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=95.87  E-value=0.023  Score=52.69  Aligned_cols=92  Identities=25%  Similarity=0.230  Sum_probs=62.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCcee-c----CCHH--h--hcCcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKF-E----EDLD--T--MLPKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~-~----~~l~--e--ll~~aDvVi~~~p~~~  185 (304)
                      .|.+|.|+|.|.+|+.+++.+++.|++ |++.+++....+..++.|+.. .    .+..  .  .-...|+++-+.+...
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~  238 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK  238 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence            578999999999999999999999998 788887665445555555421 1    1111  0  1245788887765321


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                           ...+.++.|+++..+|+++...
T Consensus       239 -----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         239 -----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             -----HHHHHHHHHhcCCEEEEEecCC
Confidence                 1245677788888888887543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.87  E-value=0.019  Score=50.75  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~  149 (304)
                      ..|..++|+|||+|.+|..+++.|...|.. +..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            368999999999999999999999988986 8888876

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=95.86  E-value=0.022  Score=53.43  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=58.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec---C--CHH---hhcC--cCC-EEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE---E--DLD---TMLP--KCD-IVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~---~--~l~---ell~--~aD-vVi~~~p~  183 (304)
                      .|++|.|.|.|.+|..+++.++.+|.+ |++.+++....+.++++|+...   .  +.+   ++..  ..| +++-|+..
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~  239 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV  239 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence            578999999999999999999999997 6788876655566666665321   0  111   1221  345 55555542


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      . .   .+ .+.++.++++..++.++
T Consensus       240 ~-~---~~-~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        240 P-Q---TV-ELAIEIAGPRAQLALVG  260 (347)
T ss_pred             H-H---HH-HHHHHHhhcCCEEEEEc
Confidence            1 1   11 45567777777777775

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=95.86  E-value=0.038  Score=51.88  Aligned_cols=90  Identities=21%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~  183 (304)
                      .|++|.|.|.|.+|+.+++.++..|+ +|++.+++....+.+.++|+...     .++    .++..  ..|+++-+...
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            57899999999999999999999999 78888876655555555665321     111    22332  38888887753


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ...     -.+.++.++++..++.++.
T Consensus       252 ~~~-----~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         252 QAT-----LDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             HHH-----HHHHHHhccCCCEEEEEcc
Confidence            221     1456777888888888874

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.85  E-value=0.11  Score=48.61  Aligned_cols=67  Identities=16%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChh-------HHHhcC-ceecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-------~~~~~g-~~~~~~l~ell~~aDvVi~~  180 (304)
                      .+.|++|++||- +++.++++..+..+|++|.+..|.....+       .+++.| +....++++.++++|+|..-
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            478999999997 78999999999999999999988553211       112223 34457899999999999874

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.85  E-value=0.015  Score=55.10  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~  149 (304)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 78899875

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.85  E-value=0.014  Score=56.00  Aligned_cols=63  Identities=21%  Similarity=0.400  Sum_probs=45.0

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCc-eecC---CHHhhcCcCCEEEE
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEE---DLDTMLPKCDIVVV  179 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~-~~~~---~l~ell~~aDvVi~  179 (304)
                      .++|||||-|..|+.++..++.+|++|+++|+++..+.. ..+.-+ ..+.   .+.++++.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            378999999999999999999999999999987643221 111101 0122   35678889998864

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.84  E-value=0.017  Score=52.30  Aligned_cols=37  Identities=27%  Similarity=0.189  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~  149 (304)
                      ..|..++|+|||+|.+|..+++.|...|. ++.++|..
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999998887 57787764

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.82  E-value=0.015  Score=47.91  Aligned_cols=79  Identities=16%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  199 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~m  199 (304)
                      +-|+|.|.+|+++++.++.+|++|+++|+.+.                  .++.++-+ .+.+.. .   +  .+.+ .+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e------------------~~~~~~~~-~~~~~~-~---~--~~~~-~~   54 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE------------------RFPEADEV-ICIPPD-D---I--LEDL-EI   54 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC------------------C-TTSSEE-ECSHHH-H---H--HHHC--S
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc------------------ccCCCCcc-EecChH-H---H--Hhcc-CC
Confidence            46899999999999999999999999998532                  11233332 222211 0   1  0111 34


Q ss_pred             CCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          200 KKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       200 k~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      .++..+| ++++.-.|...|.++|++
T Consensus        55 ~~~t~Vv-~th~h~~D~~~L~~~l~~   79 (136)
T PF13478_consen   55 DPNTAVV-MTHDHELDAEALEAALAS   79 (136)
T ss_dssp             -TT-EEE---S-CCCHHHHHHHHTTS
T ss_pred             CCCeEEE-EcCCchhHHHHHHHHHcC
Confidence            5555555 778888888888887777

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.81  E-value=0.022  Score=47.45  Aligned_cols=86  Identities=22%  Similarity=0.324  Sum_probs=55.6

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ..|++|++||+ ..    +++.++..+.++.++|+++....  ...+.......++++++||+|+++-..  -..+-+ .
T Consensus         9 ~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~l~~aD~viiTGsT--lvN~Ti-~   79 (147)
T PF04016_consen    9 GPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIG--EEPGDVPDEDAEEILPWADVVIITGST--LVNGTI-D   79 (147)
T ss_dssp             TTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG----SSCT-EEGGGHHHHGGG-SEEEEECHH--CCTTTH-H
T ss_pred             cCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCC--CCCCcCCHHHHHHHHccCCEEEEEeee--eecCCH-H
Confidence            47899999995 33    67788888999999999762211  111111344678999999999987531  011222 4


Q ss_pred             HHHhcCCCCCEEEEcC
Q 021995          194 DRIAKMKKGVLIVNNA  209 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~  209 (304)
                      ++++..+++..++=.|
T Consensus        80 ~iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   80 DILELARNAREVILYG   95 (147)
T ss_dssp             HHHHHTTTSSEEEEES
T ss_pred             HHHHhCccCCeEEEEe
Confidence            6777788777777665

; PDB: 3L5O_B 3NPG_A.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=95.81  E-value=0.14  Score=50.02  Aligned_cols=96  Identities=14%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             ccccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC
Q 021995          112 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       112 ~~~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~  181 (304)
                      +..+.|++|+|+|+          ..-+..+++.|...|++|.+|||.-...+....++.... + ...++.+|+|++++
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t  386 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAV  386 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEcc
Confidence            34689999999998          567889999999999999999985322222222332111 1 22467899999998


Q ss_pred             CCChhhhccccHHHH-hcCCCCCEEEEcCCCc
Q 021995          182 PLTEKTRGMFDKDRI-AKMKKGVLIVNNARGA  212 (304)
Q Consensus       182 p~~~~t~~~i~~~~l-~~mk~g~ilVn~~rg~  212 (304)
                      ...+ .+. ++-+.+ +.|+...++||+ |+-
T Consensus       387 ~h~~-f~~-~~~~~~~~~~~~~~~iiD~-r~~  415 (425)
T PRK15182        387 GHQQ-FKQ-MGSEDIRGFGKDKHVLYDL-KYV  415 (425)
T ss_pred             CCHH-hhc-CCHHHHHHhcCCCCEEEEC-CCC
Confidence            7543 222 344444 345545688884 544

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.81  E-value=0.024  Score=55.93  Aligned_cols=92  Identities=12%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcC-ceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG-AKFE--EDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g-~~~~--~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .+|.|++|.|||-|.+|..=++.|..+|++|+++.+.-.+.- .....| +...  +-.++.++.+++|+.++...    
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~----   83 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD----   83 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH----
Confidence            479999999999999999989999999999999987542211 111111 1111  11235578899888887543    


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                       -+|++....++...+++|++
T Consensus        84 -~~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         84 -AVNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             -HHhHHHHHHHHHcCcEEEEC
Confidence             34566666666667788875

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.79  E-value=0.033  Score=47.69  Aligned_cols=32  Identities=25%  Similarity=0.254  Sum_probs=28.3

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCe-EEEEcCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK  150 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~  150 (304)
                      +|+|||+|.+|..+++.|...|.. +..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999988985 88888753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=95.79  E-value=0.035  Score=52.58  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCceec---CC---HHhhcCcCCEEEEcCCCChhh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t  187 (304)
                      -.|.++.|.|.|.+|..+++.++..|.+|++.+++....+.+ +++|+...   .+   +.+.....|+++-+++.... 
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-  257 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-  257 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH-
Confidence            368899999999999999999999999988887654333222 34665321   11   22333457999888763221 


Q ss_pred             hccccHHHHhcCCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                          -.+.++.++++..++.++.
T Consensus       258 ----~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 ----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ----HHHHHHHhccCCEEEEECC
Confidence                1456778899999999874

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.79  E-value=0.22  Score=48.14  Aligned_cols=184  Identities=15%  Similarity=0.133  Sum_probs=116.3

Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC
Q 021995           60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF  139 (304)
Q Consensus        60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~  139 (304)
                      +..|+|.|..=   .-+|-.+++.+|+.+|-                    .+..|+..+|.+.|.|.-|-.+++.+++.
T Consensus       165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~--------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~  221 (432)
T COG0281         165 RMNIPVFHDDQ---QGTAIVTLAALLNALKL--------------------TGKKLKDQKIVINGAGAAGIAIADLLVAA  221 (432)
T ss_pred             cCCCCcccccc---cHHHHHHHHHHHHHHHH--------------------hCCCccceEEEEeCCcHHHHHHHHHHHHh
Confidence            45677777643   44667788899998872                    35679999999999999999999999999


Q ss_pred             CC---eEEEEcCCCCChhHH-----HhcCce-------ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCE
Q 021995          140 NC---NLLYHDRVKMDPQLE-----KETGAK-------FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVL  204 (304)
Q Consensus       140 G~---~V~~~dr~~~~~~~~-----~~~g~~-------~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~i  204 (304)
                      |+   +|+.+|+...-.+..     .+....       .... ++.+..+|+++-+.-     .+.+.++.++.|.++.+
T Consensus       222 g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~~Pi  295 (432)
T COG0281         222 GVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAKHPI  295 (432)
T ss_pred             CCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhccCCE
Confidence            98   599999864211100     000000       0111 457889999876542     28899999999999999


Q ss_pred             EEEcCCCchhchHHHHHHHHcC-CceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHH-----HHHHHHHHHHH
Q 021995          205 IVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ-----LRYAAGVKDML  278 (304)
Q Consensus       205 lVn~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~-----~~~~~~~~~~l  278 (304)
                      +.=++....--....+.+-..| .|-+      +.-|..   |- +..|+++-|-+.-..-+++     +.|...+.+-|
T Consensus       296 IfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd~---Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~Ai  365 (432)
T COG0281         296 IFALANPTPEITPEDAKEWGDGAAIVA------TGRSDY---PN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAI  365 (432)
T ss_pred             EeecCCCCccCCHHHHhhcCCCCEEEE------eCCCCC---cc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHH
Confidence            9999887743222222222222 2321      223322   21 5678999998864432221     33333444445


Q ss_pred             HHHH
Q 021995          279 DRYF  282 (304)
Q Consensus       279 ~~~~  282 (304)
                      -++.
T Consensus       366 A~~~  369 (432)
T COG0281         366 ADLA  369 (432)
T ss_pred             Hhhc
Confidence            5553

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.76  E-value=0.017  Score=52.09  Aligned_cols=37  Identities=27%  Similarity=0.181  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~  149 (304)
                      ..|.+++|.|+|+|.+|..+++.|...|.. ++.+|..
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            368999999999999999999999988874 7777765

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=95.73  E-value=0.038  Score=52.42  Aligned_cols=90  Identities=16%  Similarity=0.079  Sum_probs=58.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHh----hcC-cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDT----MLP-KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~-------~l~e----ll~-~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++....+.++++|+...-       ++.+    +.. ..|+++-++.
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G  266 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG  266 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 799998877666667777753211       1111    111 3677766654


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ....     -...+..++++ ..++.++.
T Consensus       267 ~~~~-----~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         267 NIDA-----MISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             ChHH-----HHHHHHHhhcCCCEEEEECc
Confidence            2111     13445566664 66666653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.72  E-value=0.028  Score=52.44  Aligned_cols=87  Identities=20%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHh-cCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL  183 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~-~g~~~~-----~~l~ell-----~~aDvVi~~~p~  183 (304)
                      |++|.|.|. |.+|..+++.++.+|+ +|++.+++..+.+.+++ +|+...     .++.+.+     ...|+++-++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 79988876544444443 665321     1222211     247888877653


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      . .    + .+.++.++++..+|.++
T Consensus       235 ~-~----~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         235 E-I----S-DTVISQMNENSHIILCG  254 (345)
T ss_pred             H-H----H-HHHHHHhccCCEEEEEe
Confidence            1 1    1 56778888888888876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.72  E-value=0.036  Score=51.62  Aligned_cols=91  Identities=18%  Similarity=0.202  Sum_probs=56.4

Q ss_pred             EEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhc-------C---ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          120 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-------G---AKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~-------g---~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      |+|||.|.+|..+|..+...|  .++..+|++....+ ...++       .   +....+ .+.+++||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999988777  57999998653222 11111       0   111233 4678999999998753211


Q ss_pred             ---hh--------cccc--HHHHhcCCCCCEEEEcCCC
Q 021995          187 ---TR--------GMFD--KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       187 ---t~--------~~i~--~~~l~~mk~g~ilVn~~rg  211 (304)
                         ++        .++.  .+.+....|++++|+++..
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP  117 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP  117 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence               11        1110  1122334588999999843

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=95.69  E-value=0.033  Score=51.63  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-CC----H-HhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~----l-~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .|.+|.|+|.|.+|+.+++.++.+|++|++.+++....+..++.|.... ..    . .......|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            5789999999999999999999999999999887655555555554211 11    1 111235788887764321    


Q ss_pred             cccHHHHhcCCCCCEEEEcCC
Q 021995          190 MFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       ...+.+..|+++..+|+++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             12566788999999998864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=95.67  E-value=0.035  Score=52.72  Aligned_cols=91  Identities=20%  Similarity=0.128  Sum_probs=59.0

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C----CHHh----hc-CcCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDT----ML-PKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~----~l~e----ll-~~aDvVi~~~  181 (304)
                      -.|.+|.|+|.|.+|..+++.++.+|. +|++.+++..+.+.++++|+..+   .    ++.+    +. ...|+|+-+.
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~  262 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT  262 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence            358899999999999999999999999 68888887655566666665211   0    0111    11 2467777665


Q ss_pred             CCChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          182 PLTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ....    . -.+.+..|+++ ..+|.++.
T Consensus       263 g~~~----~-~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         263 GNAD----L-MNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CChH----H-HHHHHHhcccCCCEEEEEcC
Confidence            4221    1 13456667664 67766653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=95.60  E-value=0.029  Score=52.47  Aligned_cols=88  Identities=25%  Similarity=0.200  Sum_probs=61.4

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCceec------CCHHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~~------~~l~ell-----~~aDvVi~~~p  182 (304)
                      .|++|.|.|. |.+|+.+++.++.+|++|++..++..+.+..++ +|+...      .++.+.+     ...|+++-++.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g  230 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG  230 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence            5889999998 999999999999999999888876655555555 665211      1222211     24678877664


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      . .    . -.+.++.++++..++.++
T Consensus       231 ~-~----~-~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         231 G-K----M-LDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             H-H----H-HHHHHHHhccCcEEEEec
Confidence            2 1    1 146677788888888876

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.60  E-value=0.029  Score=55.51  Aligned_cols=113  Identities=17%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC-Chh---HHHhcCcee-cCCHHhhcCcCCEEEEcC--CCC-hh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--PLT-EK  186 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~---~~~~~g~~~-~~~l~ell~~aDvVi~~~--p~~-~~  186 (304)
                      +.|++|+|+|+|.-|.+.++.|...|++|+++|.+.. ...   ..++.+... .....+.+.++|+|+..-  |.+ |.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5689999999999999999999999999999996432 111   111211111 111235567899987753  322 21


Q ss_pred             h-------hccccHHH--Hhc-CC-----CCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          187 T-------RGMFDKDR--IAK-MK-----KGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       187 t-------~~~i~~~~--l~~-mk-----~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      .       ..++.+-.  +.. ++     ...+-|--+.|+.-...-+.+.|+...
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            1       11343333  333 32     135566666788888888888887643

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.60  E-value=0.093  Score=51.11  Aligned_cols=109  Identities=13%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-----HHH-hcCceec--CCHHhhcCcCCEEEEcC--CC-Chhh
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEK-ETGAKFE--EDLDTMLPKCDIVVVNT--PL-TEKT  187 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-----~~~-~~g~~~~--~~l~ell~~aDvVi~~~--p~-~~~t  187 (304)
                      ++.|||+|.+|.++|+.|+..|++|.++|.......     ..+ ..|+...  .+ .+.+.++|+|+..-  |. +|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            478999999999999999999999999997543211     112 2365432  23 45567899887653  32 2321


Q ss_pred             h-------ccccH-HHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          188 R-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       188 ~-------~~i~~-~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      .       .++.+ +++.. ++...+-|--+.|+.-...-+...|+....
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~  129 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL  129 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            1       12322 33333 344466677778999888888888886543

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=95.57  E-value=0.099  Score=50.58  Aligned_cols=67  Identities=16%  Similarity=0.323  Sum_probs=50.9

Q ss_pred             ccCCCEEEEEee-----C---hhhHHHHHHhccCCCeEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCcC
Q 021995          114 DLEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKC  174 (304)
Q Consensus       114 ~L~g~~vgIIG~-----G---~IG~~lA~~l~~~G~~V~~~dr~~~--~~~~-------~~~~g--~~~~~~l~ell~~a  174 (304)
                      .+.|++|+|+|-     |   ++.++++..+..+|++|.+..|..-  .++.       +++.|  +...+++++.++++
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            478999999985     5   5668999999999999999988642  2221       22334  34568999999999


Q ss_pred             CEEEEc
Q 021995          175 DIVVVN  180 (304)
Q Consensus       175 DvVi~~  180 (304)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999876

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.56  E-value=0.034  Score=52.36  Aligned_cols=69  Identities=23%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhcc--CCCeEEEEcCCCCChhHHHh-------cCceec---CCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKE-------TGAKFE---EDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~--~G~~V~~~dr~~~~~~~~~~-------~g~~~~---~~l~ell~~aDvVi~~  180 (304)
                      -++.++|+|||. |.+|..+|..|..  ...++..+|+..... .+.+       ..+...   .+..+.+++||+|+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit   83 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC   83 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence            467789999999 9999999998874  446799999832111 1111       112212   1225789999999988


Q ss_pred             CCC
Q 021995          181 TPL  183 (304)
Q Consensus       181 ~p~  183 (304)
                      +-.
T Consensus        84 aG~   86 (321)
T PTZ00325         84 AGV   86 (321)
T ss_pred             CCC
Confidence            643

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.034  Score=54.52  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=70.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHh--cCceec---CCHHhhcCcCCEEEEcC--CC-Chh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE---EDLDTMLPKCDIVVVNT--PL-TEK  186 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~--~g~~~~---~~l~ell~~aDvVi~~~--p~-~~~  186 (304)
                      +-+|+|+|+|.+|.++|+.|+..|++|.++|......  +..++  .|+...   .+ .+.+.++|+|+..-  |. +|.
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p~   84 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTPA   84 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCHH
Confidence            4589999999999999999999999999999754321  11222  255432   13 34567899887653  32 221


Q ss_pred             hh-------ccccH-HHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          187 TR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       187 t~-------~~i~~-~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      ..       .++.+ +++.. ++...+-|--+.|+.-...-+...|+...
T Consensus        85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  134 (448)
T PRK03803         85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG  134 (448)
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            11       12322 33333 34345566666798888888888887643

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=95.56  E-value=0.039  Score=51.99  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C--C-------HHhhc--CcCCEEEEc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~--~-------l~ell--~~aDvVi~~  180 (304)
                      .|++|.|.|.|.+|+.+++.++.+|+ +|++.+++....+..+++|+...   .  +       +.++.  ...|+++-+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~  256 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA  256 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence            68899999999999999999999999 89888876655555556665211   1  1       11222  246888776


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .....    . ..+.+..++++..+|.++.
T Consensus       257 ~g~~~----~-~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         257 SGHPA----A-VPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CCChH----H-HHHHHHHhccCCEEEEEcC
Confidence            64211    1 1456677788888887763

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.55  E-value=0.022  Score=52.97  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=26.7

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV  149 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~  149 (304)
                      +|.|+|+|.+|..+|+.|...|.. ++.+|..
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            589999999999999999999975 7777643

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.55  E-value=0.037  Score=52.65  Aligned_cols=86  Identities=23%  Similarity=0.291  Sum_probs=51.6

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCC---eEEEE--cCCCCChhHHHhcCce-ecCCH-HhhcCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYH--DRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~---~V~~~--dr~~~~~~~~~~~g~~-~~~~l-~ell~~aDvVi~~~p~~~~t  187 (304)
                      ...+|+|+| .|.+|+.+.+.|...++   ++.++  .++..+..  ...+.. .+.++ .+.+.++|+|++++|.... 
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~--~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s-   82 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKV--TFEGRDYTVEELTEDSFDGVDIALFSAGGSIS-   82 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCee--eecCceeEEEeCCHHHHcCCCEEEECCCcHHH-
Confidence            456899999 59999999999987554   33333  22211111  111111 11122 2345889999999995422 


Q ss_pred             hccccHHHHhcC-CCCCEEEEcC
Q 021995          188 RGMFDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       188 ~~~i~~~~l~~m-k~g~ilVn~~  209 (304)
                           .+..+.+ +.|+.+||.|
T Consensus        83 -----~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         83 -----KKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             -----HHHHHHHHhCCCEEEECC
Confidence                 3333333 5789999998

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=95.55  E-value=0.042  Score=51.58  Aligned_cols=98  Identities=16%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhcc-------CCCeEEEEcCCCCCh----hHHHh-----------------cCceecC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKMDP----QLEKE-----------------TGAKFEE  165 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~-------~G~~V~~~dr~~~~~----~~~~~-----------------~g~~~~~  165 (304)
                      +..-++|+|||.|+-|+.+|+.+..       |..+|..|-+...-.    ...+-                 ..+..+.
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            3455799999999999999998753       344565554322111    11110                 1134557


Q ss_pred             CHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995          166 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       166 ~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      ++.+.+.+||+++..+|.+ -+..+ -+++....|+++..|.+.-|--
T Consensus        98 dl~ea~~dADilvf~vPhQ-f~~~i-c~~l~g~vk~~~~aISL~KG~e  143 (372)
T KOG2711|consen   98 DLVEAAKDADILVFVVPHQ-FIPRI-CEQLKGYVKPGATAISLIKGVE  143 (372)
T ss_pred             hHHHHhccCCEEEEeCChh-hHHHH-HHHHhcccCCCCeEEEeeccee
Confidence            8999999999999999954 22233 3677788899999999887743

>PLN02827 Alcohol dehydrogenase-like

Probab=95.54  E-value=0.045  Score=52.39  Aligned_cols=89  Identities=18%  Similarity=0.112  Sum_probs=60.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-C------CHHh----hcC-cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E------DLDT----MLP-KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-~------~l~e----ll~-~aDvVi~~~p  182 (304)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.+++..+.+.++++|+... .      +..+    +.. ..|+++-++.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  272 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG  272 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence            589999999999999999999999985 7788876666666677775321 0      1111    111 4677777665


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~  209 (304)
                      ....    + ...+..++++ ..+|.++
T Consensus       273 ~~~~----~-~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        273 DTGI----A-TTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             ChHH----H-HHHHHhhccCCCEEEEEC
Confidence            3211    1 3556667776 7777665

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.53  E-value=0.07  Score=50.62  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=49.8

Q ss_pred             ccCCCEEEEEee---ChhhHHHHHHhc-cCCCeEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~---G~IG~~lA~~l~-~~G~~V~~~dr~~~--~~~~---~~~~g--~~~~~~l~ell~~aDvVi~~  180 (304)
                      .+.|++|+++|-   +++..+++..+. -+|++|.+..|...  +.+.   +++.|  +...+++++.++++|+|...
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            589999999997   588888888766 44999999887542  2221   12334  34567999999999999884

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.53  E-value=0.036  Score=49.49  Aligned_cols=90  Identities=11%  Similarity=0.054  Sum_probs=58.6

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcC-ceec---CCHHhhcCcCCEEEEcCCCChhh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG-AKFE---EDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g-~~~~---~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ..+.|++|.|||.|.+|..=++.|..+|++|+++.+...+.- .....+ ++..   .+ .+.+..+++|+.++...   
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~-~~dl~g~~LViaATdD~---   96 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYD-KEFIKDKHLIVIATDDE---   96 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC-hHHhCCCcEEEECCCCH---
Confidence            467899999999999999988999999999999998543211 111111 2111   12 23467889888887532   


Q ss_pred             hccccHHHHhcCCCCCEEEEc
Q 021995          188 RGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~  208 (304)
                        -+|.......+.-.+++|+
T Consensus        97 --~vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         97 --KLNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             --HHHHHHHHHHHHcCCeEEE
Confidence              3345555555554556665

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.50  E-value=0.045  Score=50.69  Aligned_cols=90  Identities=22%  Similarity=0.300  Sum_probs=62.6

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-hcCcCCEEEEcCCCChhhhccccH
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~e-ll~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ..|.++.|.|.|.+|+.+++.++..|.+|++.+++....+.++++|+....+.++ .-+..|+++.+.+...     .-.
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~~-----~~~  240 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVGA-----LVP  240 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcHH-----HHH
Confidence            3578999999999999999999999999998887665556666667643212111 1134677776654221     135


Q ss_pred             HHHhcCCCCCEEEEcC
Q 021995          194 DRIAKMKKGVLIVNNA  209 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~  209 (304)
                      +.++.++++..++..+
T Consensus       241 ~~~~~l~~~G~~v~~g  256 (329)
T cd08298         241 AALRAVKKGGRVVLAG  256 (329)
T ss_pred             HHHHHhhcCCEEEEEc
Confidence            6778888888888765

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.49  E-value=0.03  Score=52.94  Aligned_cols=88  Identities=25%  Similarity=0.225  Sum_probs=61.0

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDvVi~~~p  182 (304)
                      .|.+|.|.|. |.+|..+++.++.+|++|++.+++..+.+..+ ++|+..+      .++.+.+     ...|+++-++.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG  237 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG  237 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence            5889999999 99999999999999999998887654445444 5665321      1233222     13688877665


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      . +    . -...++.++++..++.++
T Consensus       238 ~-~----~-~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        238 G-D----M-LDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             H-H----H-HHHHHHHhccCCEEEEEC
Confidence            2 1    1 146677788888888776

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.49  E-value=0.043  Score=53.51  Aligned_cols=72  Identities=10%  Similarity=0.047  Sum_probs=53.2

Q ss_pred             ccccCCCEEEEEee----------ChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995          112 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       112 ~~~L~g~~vgIIG~----------G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~  180 (304)
                      +.++.|++|+|+|+          ..-+..+++.|+..| .+|.+|||.-............ ..++++.+++||+|+++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~-~~~~~~~~~~ad~vvi~  393 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVT-LVSLDEALATADVLVML  393 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCcee-eCCHHHHHhCCCEEEEC
Confidence            34688999999997          456789999999986 9999999863221111011122 36899999999999999


Q ss_pred             CCCC
Q 021995          181 TPLT  184 (304)
Q Consensus       181 ~p~~  184 (304)
                      .+..
T Consensus       394 t~~~  397 (415)
T PRK11064        394 VDHS  397 (415)
T ss_pred             CCCH
Confidence            9854

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=95.48  E-value=0.044  Score=50.50  Aligned_cols=89  Identities=15%  Similarity=0.073  Sum_probs=59.9

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCH--------Hhhc-CcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL--------DTML-PKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l--------~ell-~~aDvVi~~~p~~~  185 (304)
                      .|.+|.|+|. |.+|..+++.++..|++|++.+++....+..+++|+...-+.        .++. ...|+++-+... .
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~-~  224 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG-K  224 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH-H
Confidence            3679999998 999999999999999999988887666666666665221110        1111 236777655532 1


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .     ..+.+..++++..+|.++.
T Consensus       225 ~-----~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         225 T-----LAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             H-----HHHHHHHhhcCCEEEEEee
Confidence            1     2456777778888877763

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.47  E-value=0.046  Score=53.93  Aligned_cols=111  Identities=18%  Similarity=0.290  Sum_probs=66.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-Cceec-CCHHhhcCcCCEEEEcC--CC-Chhhh--
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDLDTMLPKCDIVVVNT--PL-TEKTR--  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~-~~l~ell~~aDvVi~~~--p~-~~~t~--  188 (304)
                      .|++|+|+|+|.-|.++++.|+. |++|+++|..........+. ..... ....+.+.++|+|+..-  |. ++...  
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            57899999999999999999995 99999999543322211111 00111 11234567899887753  32 22111  


Q ss_pred             -----ccccH-HHH-hcCCC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          189 -----GMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       189 -----~~i~~-~~l-~~mk~-g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                           .++.+ +++ ..+++ ..+=|--+.|+.-...-+...|+...
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  130 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG  130 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence                 12322 333 33333 24555555788888888888888643

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.46  E-value=0.044  Score=52.05  Aligned_cols=89  Identities=20%  Similarity=0.161  Sum_probs=59.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C----CHHh----hcC-cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDT----MLP-KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~----~l~e----ll~-~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.++++|+...   .    ++.+    +.. ..|+|+-++.
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g  265 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG  265 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence            58899999999999999999999999 69999887766666666665321   1    1212    111 4688877664


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~  209 (304)
                      ....     -.+.++.++++ ..++.++
T Consensus       266 ~~~~-----~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         266 NVKV-----MRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             ChHH-----HHHHHHhhccCCCeEEEEc
Confidence            2211     13456667665 6666665

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK15076 alpha-galactosidase; Provisional

Probab=95.45  E-value=0.03  Score=54.85  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CEEEEEeeChhhHHHHH--Hh---ccC-CCeEEEEcCCCCChhHHH--------hcC----ceecCCHHhhcCcCCEEEE
Q 021995          118 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLEK--------ETG----AKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~--~l---~~~-G~~V~~~dr~~~~~~~~~--------~~g----~~~~~~l~ell~~aDvVi~  179 (304)
                      ++|+|||.|.+|...+-  .+   .++ |.+|+.+|.+....+...        ..+    +....++.+.+++||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            48999999999955433  22   233 568999998764333111        112    2335677899999999998


Q ss_pred             cCCCC--hhhh----------ccc---------------------cHH---HHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          180 NTPLT--EKTR----------GMF---------------------DKD---RIAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       180 ~~p~~--~~t~----------~~i---------------------~~~---~l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      +.-..  +.-+          +++                     -.+   .+....|++++||.+..--+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            86542  1110          000                     011   23334689999999987766666665 33


Q ss_pred             HcCCceEEE
Q 021995          224 SSGHIAGYS  232 (304)
Q Consensus       224 ~~g~i~ga~  232 (304)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            444565544

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=95.42  E-value=0.064  Score=49.88  Aligned_cols=92  Identities=22%  Similarity=0.253  Sum_probs=63.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceecCC--------HHhhcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEED--------LDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~--------l~ell~--~aDvVi~~~p~~  184 (304)
                      .|++|.|.|.|.+|..+++.++..| .+|++..+++...+..+++|+...-+        +.++..  ..|+++-+.+..
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~  246 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD  246 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence            5789999999999999999999998 89988887665555556666422111        223332  478888776532


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +.     ..+.++.++++..+|.++..+
T Consensus       247 ~~-----~~~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         247 ET-----LALAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             HH-----HHHHHHHhhcCCEEEEEcCCC
Confidence            11     255677788888888887543

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.40  E-value=0.046  Score=53.54  Aligned_cols=114  Identities=16%  Similarity=0.194  Sum_probs=72.2

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHh--cCceec--CCHHhhcCcCCEEEEcC--C-CCh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNT--P-LTE  185 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~--~g~~~~--~~l~ell~~aDvVi~~~--p-~~~  185 (304)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|......  ....+  .|+...  ...++...++|+|+...  | ..|
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            578999999999999999999999999999999765432  11222  254432  11234456899998753  2 222


Q ss_pred             hhhc-------cc-cHHHHhc-CC---CCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          186 KTRG-------MF-DKDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       186 ~t~~-------~i-~~~~l~~-mk---~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      ....       ++ ..+++.. ++   ...+-|--+.|+.-...-+...|+....
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~  137 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence            2211       22 2234333 32   2355566667888888888888876443

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=95.35  E-value=0.073  Score=48.60  Aligned_cols=90  Identities=23%  Similarity=0.186  Sum_probs=60.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p~  183 (304)
                      .|.+|.|.|.|.+|+.+++.++..|++ |++..++....+..+++|+...     .++    .++.  ...|+++-+...
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~  208 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH  208 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            578999999999999999999999999 8888776544444455554211     122    2222  247888776542


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ..     .....++.|+++..+++++.
T Consensus       209 ~~-----~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         209 QW-----PLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             HH-----HHHHHHHHhccCCEEEEEcc
Confidence            21     12456677888888888864

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK10083 putative oxidoreductase; Provisional

Probab=95.32  E-value=0.064  Score=49.94  Aligned_cols=91  Identities=23%  Similarity=0.289  Sum_probs=61.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CCCe-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC----cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~----~aDvVi~~~p~~  184 (304)
                      .|.+|.|+|.|.+|..+++.++. +|.+ |++.+++..+.+.++++|+...     .++.+.+.    +.|+++-+....
T Consensus       160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~  239 (339)
T PRK10083        160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHP  239 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCH
Confidence            57899999999999999999986 6986 6677876656666666776322     12323332    235666665422


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ..     -.+.++.++++..+|+++..
T Consensus       240 ~~-----~~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        240 SI-----LEEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             HH-----HHHHHHHhhcCCEEEEEccC
Confidence            11     25667788888889888753

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.32  E-value=0.12  Score=48.78  Aligned_cols=65  Identities=18%  Similarity=0.186  Sum_probs=44.2

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCCCC---hhHHHhc---------CceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~~~---~~~~~~~---------g~~~~~~l~ell~~aDvV  177 (304)
                      ++|+|||. |.+|..+|..|...|.       ++..+|.....   ...+.++         .+....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            48999999 9999999998876554       78999984321   1111111         112223456789999999


Q ss_pred             EEcCC
Q 021995          178 VVNTP  182 (304)
Q Consensus       178 i~~~p  182 (304)
                      +++.-
T Consensus        83 vitaG   87 (322)
T cd01338          83 LLVGA   87 (322)
T ss_pred             EEeCC
Confidence            99864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=95.31  E-value=0.16  Score=41.67  Aligned_cols=98  Identities=14%  Similarity=0.249  Sum_probs=69.2

Q ss_pred             HHHHHhccCCCeEEEEcCCCC----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE
Q 021995          131 LLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  206 (304)
Q Consensus       131 ~lA~~l~~~G~~V~~~dr~~~----~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV  206 (304)
                      ..+++|...|++|++=.-...    +.+.-.+.|+...++.++++++||+|+-.-|.+        .+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            567888888999887654322    223334458877777779999999998766543        56778899999999


Q ss_pred             EcCCCchhchHHHHHHHHcCCceEEEeecCCC
Q 021995          207 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  238 (304)
Q Consensus       207 n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (304)
                      -.....  ....+++.|.+.++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            887655  588899999999999887776543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.30  E-value=0.033  Score=49.29  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      ++.++++.|+|. |.+|+.+++.|...|++|++.+|++..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            467899999995 899999999999999999999997643

>PRK08223 hypothetical protein; Validated

Probab=95.30  E-value=0.039  Score=51.09  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~  149 (304)
                      ..|..++|.|||+|.+|..+++.|...|.. +..+|..
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999998874 7777754

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.27  E-value=0.068  Score=50.46  Aligned_cols=110  Identities=20%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             EEEEEeeChhhHHHHHHhcc--------CCCeEE-EEcCCCC-------ChhHH---HhcC-c--eecC--CHHhhc-Cc
Q 021995          119 TVGTVGCGRIGKLLLQRLKP--------FNCNLL-YHDRVKM-------DPQLE---KETG-A--KFEE--DLDTML-PK  173 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~--------~G~~V~-~~dr~~~-------~~~~~---~~~g-~--~~~~--~l~ell-~~  173 (304)
                      +|+|+|||++|+.+++.|..        ++.+|+ +.|++..       ..+..   .+.+ .  ....  ++++++ .+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~   81 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK   81 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence            79999999999999999865        566755 4455421       01111   0101 1  1112  455553 46


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  229 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~  229 (304)
                      +|+|+=|.|....-... -..+.+.|+.|.-+|-..-|.+. ..+.|.++.+++...
T Consensus        82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            89999998753210001 12345667888888888877775 455666666665544

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=95.25  E-value=0.063  Score=50.17  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C---CHHh----hcC-cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---DLDT----MLP-KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~---~l~e----ll~-~aDvVi~~~p~~  184 (304)
                      .|++|.|.|.|.+|+.+++.++..|++|++..++....+..+++|+...   .   ++.+    +.. ..|+++-+....
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~  244 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIP  244 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCH
Confidence            5789999999999999999999999999988876655555566665211   1   1211    121 478888776421


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      .     .-...+..|+++..+|+++..
T Consensus       245 ~-----~~~~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         245 E-----TCRNSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             H-----HHHHHHHHhhcCCEEEEeCCc
Confidence            1     124567788888889888743

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.25  E-value=0.093  Score=48.97  Aligned_cols=53  Identities=23%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecCCHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD  168 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~l~  168 (304)
                      .|++++|.|+|.+|-++++-++++|. +++++|.++.+-+.++++|+..+-+..
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~  245 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK  245 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence            58999999999999999999999997 599999998888888888875443443

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.24  E-value=0.06  Score=48.92  Aligned_cols=128  Identities=16%  Similarity=0.135  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC----CC-------eEE
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLL  144 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~----G~-------~V~  144 (304)
                      +|--+++.+|+.+|-                    .+..|...+|.|+|.|..|-.+|+.+...    |.       +++
T Consensus         4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~   63 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW   63 (255)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence            456678888888873                    24568999999999999999999998776    87       488


Q ss_pred             EEcCCCC------Chh-----HHHhcCc-eecCCHHhhcCcC--CEEEEcCCCChhhhccccHHHHhcCCC---CCEEEE
Q 021995          145 YHDRVKM------DPQ-----LEKETGA-KFEEDLDTMLPKC--DIVVVNTPLTEKTRGMFDKDRIAKMKK---GVLIVN  207 (304)
Q Consensus       145 ~~dr~~~------~~~-----~~~~~g~-~~~~~l~ell~~a--DvVi~~~p~~~~t~~~i~~~~l~~mk~---g~ilVn  207 (304)
                      .+|+...      ...     .++...- ....+|.|+++.+  |+++=+..    ..+++.++.++.|.+   ..++.=
T Consensus        64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~  139 (255)
T PF03949_consen   64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFP  139 (255)
T ss_dssp             EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE
T ss_pred             EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEE
Confidence            9988631      111     1111110 1114899999999  99976542    347899999999977   899999


Q ss_pred             cCCCchhchHHHHHHHHcCC
Q 021995          208 NARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       208 ~~rg~~vd~~aL~~aL~~g~  227 (304)
                      .|.....-|-.-.++.+-+.
T Consensus       140 LSNPt~~aE~~peda~~~t~  159 (255)
T PF03949_consen  140 LSNPTPKAECTPEDAYEWTD  159 (255)
T ss_dssp             -SSSCGGSSS-HHHHHHTTT
T ss_pred             CCCCCCcccCCHHHHHhhCC
Confidence            99988855555555555544

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.23  E-value=0.033  Score=48.97  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      ++.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            368899999996 77999999999999999999998753

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.23  E-value=0.021  Score=50.47  Aligned_cols=65  Identities=23%  Similarity=0.235  Sum_probs=49.1

Q ss_pred             EEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC--hhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCC
Q 021995          120 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       120 vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~--~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~~  184 (304)
                      |.|+|. |.+|+.+++.|...+++|.+.-|+..+  .+..+..|++.       .+++.+.++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678985 999999999999899999999886522  22234455532       245667899999999999843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.22  E-value=0.044  Score=51.86  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             CCEEEEEe-eChhhHHHHHHhccCCCe---EEEEcCCCCChhHHHhcCce-ecCCHH-hhcCcCCEEEEcCCCChhhhcc
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDLD-TMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~~~G~~---V~~~dr~~~~~~~~~~~g~~-~~~~l~-ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +++|+|+| .|.+|+.+++.|...|+.   +.+..+.....+...-.+.. .+.+++ +.+.++|+|++|+|....    
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s----   76 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS----   76 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH----
Confidence            46899999 599999999999886654   45554332221111111111 111222 234789999999985422    


Q ss_pred             ccHHHHhc-CCCCCEEEEcCC
Q 021995          191 FDKDRIAK-MKKGVLIVNNAR  210 (304)
Q Consensus       191 i~~~~l~~-mk~g~ilVn~~r  210 (304)
                        .+..+. ++.|+.+||.+.
T Consensus        77 --~~~~~~~~~~G~~VIDlS~   95 (334)
T PRK14874         77 --KKYAPKAAAAGAVVIDNSS   95 (334)
T ss_pred             --HHHHHHHHhCCCEEEECCc
Confidence              333332 367889998884

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.18  E-value=0.067  Score=50.23  Aligned_cols=89  Identities=20%  Similarity=0.209  Sum_probs=61.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p~  183 (304)
                      .|++|.|.|.|.+|..+++.++..|.+ |++.+++..+.+.++++|+...     .++    .++.  ...|+++-+...
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG  245 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence            578999999999999999999999995 7888876655556666665321     111    1223  247888776653


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .+    . -.+.++.++++..+|+++
T Consensus       246 ~~----~-~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         246 QD----T-FEQALKVLKPGGTISNVN  266 (351)
T ss_pred             HH----H-HHHHHHHhhcCCEEEEec
Confidence            21    1 146677788888888775

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.17  E-value=0.071  Score=51.24  Aligned_cols=37  Identities=22%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~  149 (304)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 58888876

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.14  E-value=0.039  Score=48.27  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~  150 (304)
                      ..|..++|.|+|+|.+|.++++.|...|.. +..+|...
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            468999999999999999999999999986 88888653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.11  E-value=0.082  Score=49.46  Aligned_cols=49  Identities=29%  Similarity=0.347  Sum_probs=43.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE  164 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~  164 (304)
                      .|.+|.|+|.|.||-.....++++|+. |++.|..+...+.++++|++.+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~  218 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT  218 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE
Confidence            589999999999999999999999985 8899988878888888887643

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.08  E-value=0.013  Score=46.86  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----C----CHHhhcC--cCCEEEEcCCCChhhhccccHHH
Q 021995          127 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----E----DLDTMLP--KCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       127 ~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~----~l~ell~--~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+|...++.++.+|++|++.+++..+.+.++++|+..+     .    .+.++..  ..|+++-|++..+    . -...
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~----~-~~~~   75 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGD----T-LQEA   75 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHH----H-HHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHH----H-HHHH
Confidence            37888899999999999999998777788888885422     1    1234444  4999999987322    2 2577


Q ss_pred             HhcCCCCCEEEEcCC
Q 021995          196 IAKMKKGVLIVNNAR  210 (304)
Q Consensus       196 l~~mk~g~ilVn~~r  210 (304)
                      ++.++++..++.++-
T Consensus        76 ~~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   76 IKLLRPGGRIVVVGV   90 (130)
T ss_dssp             HHHEEEEEEEEEESS
T ss_pred             HHHhccCCEEEEEEc
Confidence            888999999999973

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=95.04  E-value=0.092  Score=48.77  Aligned_cols=90  Identities=24%  Similarity=0.320  Sum_probs=60.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHHhcCceec------CC----HHhhcCcCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------ED----LDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~------~~----l~ell~~aDvVi~~~p~~  184 (304)
                      .|.+|.|.|.|.+|..+++.++. +|.+|++.+++....+.++++|+...      .+    +.+.....|+++++... 
T Consensus       162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~-  240 (338)
T PRK09422        162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVA-  240 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCC-
Confidence            57899999999999999999997 59999999887766666666665221      11    11223345755555432 


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ..   . -.+.++.++++..++.++.
T Consensus       241 ~~---~-~~~~~~~l~~~G~~v~~g~  262 (338)
T PRK09422        241 KA---A-FNQAVDAVRAGGRVVAVGL  262 (338)
T ss_pred             HH---H-HHHHHHhccCCCEEEEEee
Confidence            11   1 2566777888888887763

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.02  E-value=0.08  Score=48.84  Aligned_cols=88  Identities=20%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hc-CcCCEEEEcCCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML-PKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll-~~aDvVi~~~p~~  184 (304)
                      .|.+|.|.| .|.+|+.+++.++.+|++|++.+++..+.+..+++|+...     .++.+    +. ...|+++-++.. 
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~-  221 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG-  221 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence            578999999 6999999999999999999988876655566666665321     12211    11 236777766542 


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +.     ..+.++.++++..++.++
T Consensus       222 ~~-----~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         222 EF-----SSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             HH-----HHHHHHhhccCCEEEEEc
Confidence            11     156677788888888775

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=94.98  E-value=0.081  Score=48.58  Aligned_cols=87  Identities=16%  Similarity=0.173  Sum_probs=55.9

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CCH----Hhhc--CcCCEEEEcCCCChh
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL----DTML--PKCDIVVVNTPLTEK  186 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~l----~ell--~~aDvVi~~~p~~~~  186 (304)
                      +.+|.|.|. |.+|..+++.++..|.+|++.+++....+.++++|+...   .+.    ....  ...|+++-+... + 
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-~-  224 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGG-D-  224 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCch-H-
Confidence            468999998 999999999999999999988887655555555664221   111    1111  235666554331 1 


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                          ...+.++.++++..+|.++
T Consensus       225 ----~~~~~~~~l~~~g~~v~~g  243 (325)
T cd05280         225 ----VLANLLKQTKYGGVVASCG  243 (325)
T ss_pred             ----HHHHHHHhhcCCCEEEEEe
Confidence                1245566667777777665

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.98  E-value=0.2  Score=41.01  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=28.6

Q ss_pred             EEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK  150 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~  150 (304)
                      +|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 588998763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=94.97  E-value=0.017  Score=49.90  Aligned_cols=67  Identities=19%  Similarity=0.243  Sum_probs=45.2

Q ss_pred             CEEEEEeeChhhHHHHHHh--ccCCCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l--~~~G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      -++.|||.|++|++++.+=  +..|++++ +||..+.... ......+...+++++.++  +.|+.++|+|..
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~  157 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE  157 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence            3699999999999999643  46789854 8887653111 111122334567777777  577899999943

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.97  E-value=0.085  Score=48.05  Aligned_cols=89  Identities=16%  Similarity=0.113  Sum_probs=62.2

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhhc-CcCCEEEEcCCCChhhhcccc
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-~~~l~ell-~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .|.++.|.|. |.+|+.+++.++.+|++|++.+++....+..+++|+.. ....+++. ...|+++-++...    .  .
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~~----~--~  205 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGGP----Q--L  205 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCcH----H--H
Confidence            5899999998 99999999999999999998887665555666666421 11111111 2477777665421    1  2


Q ss_pred             HHHHhcCCCCCEEEEcCC
Q 021995          193 KDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~r  210 (304)
                      ...++.|+++..+|.++.
T Consensus       206 ~~~~~~l~~~G~~v~~g~  223 (305)
T cd08270         206 ARALELLAPGGTVVSVGS  223 (305)
T ss_pred             HHHHHHhcCCCEEEEEec
Confidence            567788888888888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=94.96  E-value=0.17  Score=49.89  Aligned_cols=107  Identities=13%  Similarity=0.122  Sum_probs=72.6

Q ss_pred             cCCCEEEEEee----ChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          115 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       115 L~g~~vgIIG~----G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      +.-++|+|||.    |++|..+.+.|+..|+  +|+.+++...     .-.|...+.+++++-...|++++++|.. .+.
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~   78 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVPAK-YVP   78 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecCHH-HHH
Confidence            56689999998    8899999999998887  6888887542     2246667778999988899999999943 223


Q ss_pred             ccccHHHHhcCCCCCEEE-EcCCCc-----hhchHHHHHHHHcCCce
Q 021995          189 GMFDKDRIAKMKKGVLIV-NNARGA-----IMDTQAVVDACSSGHIA  229 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilV-n~~rg~-----~vd~~aL~~aL~~g~i~  229 (304)
                      .++ ++..+ .+-..++| .-+-++     ...+++|.+..+++.+.
T Consensus        79 ~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir  123 (447)
T TIGR02717        79 QVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR  123 (447)
T ss_pred             HHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence            333 23332 33334433 222222     23457788888887766

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=94.96  E-value=0.078  Score=49.76  Aligned_cols=92  Identities=22%  Similarity=0.241  Sum_probs=56.8

Q ss_pred             EEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHh--cC-----cee-c--CCHHhhcCcCCEEEEcCCCC-
Q 021995          119 TVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE--TG-----AKF-E--EDLDTMLPKCDIVVVNTPLT-  184 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~--~g-----~~~-~--~~l~ell~~aDvVi~~~p~~-  184 (304)
                      +|+|||. |.+|..+|-.|...+  -++..+|... ....+.+  .+     +.. .  +++.+.+++||+|+++.... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~   79 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPR   79 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCC
Confidence            5899999 999999999886555  4799999865 2211111  11     121 1  13467899999999886432 


Q ss_pred             -h-h--------hhcccc--HHHHhcCCCCCEEEEcCCC
Q 021995          185 -E-K--------TRGMFD--KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 -~-~--------t~~~i~--~~~l~~mk~g~ilVn~~rg  211 (304)
                       + .        +..++.  .+.+....|++++|+++..
T Consensus        80 ~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        80 KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence             2 1        111110  0123334689999999854

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=94.94  E-value=0.1  Score=48.99  Aligned_cols=94  Identities=27%  Similarity=0.305  Sum_probs=58.5

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHh--cC-----cee--c-CCHHhhcCcCCEEEEcCCC-
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE--TG-----AKF--E-EDLDTMLPKCDIVVVNTPL-  183 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~--~g-----~~~--~-~~l~ell~~aDvVi~~~p~-  183 (304)
                      ++|+|||. |.+|..+|-.|...|  -++..+|.+ .....+.+  .+     +..  . +++.+.+++||+|+++... 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            48999999 999999999887666  478999986 22211111  11     121  1 2346789999999988643 


Q ss_pred             -Ch-hhhc-cc--cHH-------HHhcCCCCCEEEEcCCCc
Q 021995          184 -TE-KTRG-MF--DKD-------RIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       184 -~~-~t~~-~i--~~~-------~l~~mk~g~ilVn~~rg~  212 (304)
                       .+ .++- ++  |.+       .+....|++++|+++..-
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv  120 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV  120 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence             22 1111 11  111       233346899999998653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=94.92  E-value=0.08  Score=49.25  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=60.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C--CHHhhc---CcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--DLDTML---PKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~--~l~ell---~~aDvVi~~~p~~~~  186 (304)
                      .|.+|.|.|.|.+|+.+++.++.+|. +|++.+++....+..++.|...+   .  ++.++.   ...|+++-+......
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~  244 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAA  244 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHHH
Confidence            78999999999999999999999999 78888876544445555554211   1  121222   226787776542211


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                           ..+.++.|+++..+|+++.
T Consensus       245 -----~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         245 -----LASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             -----HHHHHHHHhcCCEEEEEec
Confidence                 2456777888888888763

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.92  E-value=0.088  Score=49.08  Aligned_cols=87  Identities=21%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecC-----CHH--hhc--CcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLD--TML--PKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~-----~l~--ell--~~aDvVi~~~p~~~  185 (304)
                      .|.+|.|.|. |.+|+.+++.++..|++|++.+.+. ..+.+++.|+....     ...  ...  ...|+++-+... +
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~  254 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P  254 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence            5789999998 9999999999999999988777544 44455555542111     111  111  347777766652 1


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                           .....+..|+++..+|+++
T Consensus       255 -----~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         255 -----LFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             -----HHHHHHHHhccCCEEEEec
Confidence                 1245667778888887765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PLN00106 malate dehydrogenase

Probab=94.91  E-value=0.067  Score=50.42  Aligned_cols=96  Identities=23%  Similarity=0.323  Sum_probs=59.8

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHh-------cCce---ecCCHHhhcCcCCEEEEcCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE-------TGAK---FEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~-------~g~~---~~~~l~ell~~aDvVi~~~p  182 (304)
                      ..++|+|+|. |.+|..+|..|...+  -++..+|... ....+.+       ..+.   ..+++.+.+++||+|+++.-
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            4469999999 999999999887444  4799999865 2111111       0111   12345788999999998754


Q ss_pred             C--Ch-hhhc-cc--c----HHH---HhcCCCCCEEEEcCCCc
Q 021995          183 L--TE-KTRG-MF--D----KDR---IAKMKKGVLIVNNARGA  212 (304)
Q Consensus       183 ~--~~-~t~~-~i--~----~~~---l~~mk~g~ilVn~~rg~  212 (304)
                      .  .+ .++. ++  |    .+.   +....+++++++++..-
T Consensus        96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            2  21 1111 11  1    122   23335889999998655

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=94.90  E-value=0.087  Score=49.07  Aligned_cols=93  Identities=16%  Similarity=0.166  Sum_probs=62.7

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec----CCH----Hhhc--CcCCEEEEcCCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPL  183 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~----~~l----~ell--~~aDvVi~~~p~  183 (304)
                      ..|++|.|.|.|.+|+.+++.++..|+ +|++.+++..+.....++|+...    .++    .++.  ...|+++-+...
T Consensus       166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~  245 (344)
T cd08284         166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG  245 (344)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            357899999999999999999999997 78887665444444555663211    111    2233  347888777653


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ..     .....+..|+++..+|.++...
T Consensus       246 ~~-----~~~~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         246 AA-----ALDLAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             HH-----HHHHHHHhcccCCEEEEECcCC
Confidence            21     1246677888888999887543

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=94.90  E-value=0.16  Score=50.81  Aligned_cols=96  Identities=18%  Similarity=0.195  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEee---ChhhHHHHHHhccCC-CeEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCcCCEE--EE-
Q 021995          114 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIV--VV-  179 (304)
Q Consensus       114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G-~~V~~~dr~~~--~~~~---~~~~g--~~~~~~l~ell~~aDvV--i~-  179 (304)
                      .+.|++|+++|-   +++.++++..+..|| ++|.+..|...  +.+.   +++.|  +....++++.++++|+.  +. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            588999999997   689999999999998 99999887543  2221   22334  34568999999999952  22 


Q ss_pred             ------cCCCC-----hh--hhccccHHHHhcCCCCCEEEEcC
Q 021995          180 ------NTPLT-----EK--TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       180 ------~~p~~-----~~--t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                            ..+..     ..  -...++++.++.+|++++|..+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  12111     01  12357889999999999999876

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.89  E-value=0.17  Score=47.33  Aligned_cols=64  Identities=23%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC--eEEEEcCCC--CChh-----HHH---hcC----ceecCCHHhhcCcCCEEEEc
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDPQ-----LEK---ETG----AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~--~V~~~dr~~--~~~~-----~~~---~~g----~~~~~~l~ell~~aDvVi~~  180 (304)
                      ++|+|+|. |.+|..++..|...|.  +|+.+|+..  ...+     ...   ..+    +....+. +.+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            48999998 9999999999987775  499999843  1111     000   111    1122344 459999999999


Q ss_pred             CC
Q 021995          181 TP  182 (304)
Q Consensus       181 ~p  182 (304)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            75

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.87  E-value=0.065  Score=55.26  Aligned_cols=69  Identities=23%  Similarity=0.264  Sum_probs=51.2

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E  165 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~  165 (304)
                      -.|++|.|||.|..|-..|..|...|++|++|++....                     .+..++.|++..        .
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            36899999999999999999999999999999875421                     122344565421        1


Q ss_pred             CHHhhcCcCCEEEEcCCC
Q 021995          166 DLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       166 ~l~ell~~aDvVi~~~p~  183 (304)
                      +++++..+.|.|++++..
T Consensus       405 ~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            455666789999997654

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.87  E-value=0.22  Score=48.35  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEc--CCC-Chhh---hc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVN--TPL-TEKT---RG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell--~~aDvVi~~--~p~-~~~t---~~  189 (304)
                      ++|.|+|+|..|.++|+.|+ .|++|+++|..+.... ..+.|+... + ++.+  .++|+|+..  +|. ++..   +.
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            36899999999999999999 9999999996432221 223455443 2 2233  468988665  232 2221   11


Q ss_pred             cccH-HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          190 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       190 ~i~~-~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ++.+ +++..+.+..+-|--+.|+.-...-+...|+..
T Consensus        77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~  114 (401)
T PRK03815         77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDF  114 (401)
T ss_pred             HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHC
Confidence            2222 233332233566666779888888888888763

>PLN02602 lactate dehydrogenase

Probab=94.85  E-value=0.086  Score=50.26  Aligned_cols=92  Identities=16%  Similarity=0.245  Sum_probs=56.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc-------C-cee--cCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET-------G-AKF--EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~-------g-~~~--~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||.|.+|..+|..+...|.  ++..+|.+....+ .+.++       + ...  ..+.+ .+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCC
Confidence            699999999999999998875554  6999998653221 11111       1 111  12444 489999999985432


Q ss_pred             --h-hhh-ccc--cH-------HHHhcCCCCCEEEEcCC
Q 021995          185 --E-KTR-GMF--DK-------DRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 --~-~t~-~~i--~~-------~~l~~mk~g~ilVn~~r  210 (304)
                        + .++ .++  |.       +.+....+++++|+++.
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              1 122 111  11       12333467899999984

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.84  E-value=0.061  Score=50.69  Aligned_cols=87  Identities=22%  Similarity=0.246  Sum_probs=61.8

Q ss_pred             CCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCC-----HH----hhcC--cCCEEEEcCCCC
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED-----LD----TMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~-----l~----ell~--~aDvVi~~~p~~  184 (304)
                      |++|.|.| .|.+|....+.++++|..+++...+..+.+.++++|+...-+     +.    ++..  ..|+|+-++-..
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~  222 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGD  222 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHH
Confidence            89999999 899999999999999966555554454455777888643222     33    3332  589998877522


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                           .+ .+.++.|+++..++.++
T Consensus       223 -----~~-~~~l~~l~~~G~lv~ig  241 (326)
T COG0604         223 -----TF-AASLAALAPGGRLVSIG  241 (326)
T ss_pred             -----HH-HHHHHHhccCCEEEEEe
Confidence                 12 45778888888888876

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.84  E-value=0.082  Score=51.62  Aligned_cols=112  Identities=15%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCceecC--CHHhhcCcCCEEEEcCCCChhhhc-
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTRG-  189 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~--~l~ell~~aDvVi~~~p~~~~t~~-  189 (304)
                      ++.+++|.|+|+|..|.+.++.|+..|++|.++|....... ...+.|+....  ...+.++..|+|+.. |.-+.... 
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~   81 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPS   81 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHH
Confidence            35688999999999999999999999999999997543221 11122543321  122456778977654 32221111 


Q ss_pred             ----------cccH-HHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          190 ----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       190 ----------~i~~-~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                                ++.+ +++..+ +...+-|--+.|+.-...-|.+.|+..
T Consensus        82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~  130 (438)
T PRK03806         82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  130 (438)
T ss_pred             HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence                      2222 344333 333455666678888888888888753

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.78  E-value=0.24  Score=48.49  Aligned_cols=111  Identities=22%  Similarity=0.291  Sum_probs=68.9

Q ss_pred             cCC-CEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCCh--hHHHhcCceec---CCHHhhcCcCCEEEEcC--CC-
Q 021995          115 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE---EDLDTMLPKCDIVVVNT--PL-  183 (304)
Q Consensus       115 L~g-~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~--~~~~~~g~~~~---~~l~ell~~aDvVi~~~--p~-  183 (304)
                      +.+ ++|.|+|+|..|.+.++.|...  |++|.++|......  +..+. |+...   .+. +.+.++|+|+..-  |. 
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~   81 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNL-EWLLEADLVVTNPGIALA   81 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCCh-HHhccCCEEEECCCCCCC
Confidence            456 7899999999999999999876  58999999754322  11222 55432   132 4457899887653  32 


Q ss_pred             Chhhh-------ccccH-HHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          184 TEKTR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       184 ~~~t~-------~~i~~-~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      +|...       .++.+ +++.. ++...+-|--+.|+.-...-|...|+...
T Consensus        82 ~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g  134 (438)
T PRK04663         82 TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG  134 (438)
T ss_pred             CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence            22211       12222 33333 34345556566788888887888887543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.78  E-value=0.084  Score=48.73  Aligned_cols=67  Identities=24%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh---c-----Cce-------ecCCHHhhcCcCCEEEE
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~---~-----g~~-------~~~~l~ell~~aDvVi~  179 (304)
                      .|++|.|.| .|-||+.+++.|...|++|.+.+|+.........   .     .++       ....++++++++|+|+-
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            368999999 6999999999999999999988876533211110   0     111       11346677888998876


Q ss_pred             cCC
Q 021995          180 NTP  182 (304)
Q Consensus       180 ~~p  182 (304)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            653

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.72  E-value=0.059  Score=47.13  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~  149 (304)
                      ..|..++|.|+|+|.+|.++++.|...|.. ++.+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468899999999999999999999988986 8888865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.71  E-value=0.13  Score=48.24  Aligned_cols=75  Identities=16%  Similarity=0.228  Sum_probs=51.3

Q ss_pred             EEEEEee-ChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          119 TVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      +|+|+|. |-.|.++.++|... .+++........         ... .+.+++++++|++++++|....      .+..
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~~-~~~~~~~~~~D~vFlalp~~~s------~~~~   66 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KDA-AERAKLLNAADVAILCLPDDAA------REAV   66 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cCc-CCHhHhhcCCCEEEECCCHHHH------HHHH
Confidence            7999995 99999999999865 556665543221         111 2456777899999999995422      2333


Q ss_pred             hcC-CCCCEEEEcC
Q 021995          197 AKM-KKGVLIVNNA  209 (304)
Q Consensus       197 ~~m-k~g~ilVn~~  209 (304)
                      +.+ ..|+.+||.|
T Consensus        67 ~~~~~~g~~VIDlS   80 (310)
T TIGR01851        67 SLVDNPNTCIIDAS   80 (310)
T ss_pred             HHHHhCCCEEEECC
Confidence            322 5688999998

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.70  E-value=0.056  Score=54.93  Aligned_cols=69  Identities=19%  Similarity=0.351  Sum_probs=49.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCc-eecCC---HHhhcCcCCEEEEcCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEED---LDTMLPKCDIVVVNTP  182 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~-~~~~~---l~ell~~aDvVi~~~p  182 (304)
                      ....++|||||-|..|+.+++.++.+|++|+++|+++..+.. ..+..+ ..+.+   +.++.+++|+|.....
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            478899999999999999999999999999999987642221 111111 11233   4556788999876544

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.69  E-value=0.045  Score=51.84  Aligned_cols=62  Identities=21%  Similarity=0.402  Sum_probs=44.0

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCc-eecCC---HHhhcCcCCEEEEc
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEED---LDTMLPKCDIVVVN  180 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~-~~~~~---l~ell~~aDvVi~~  180 (304)
                      +|||||.|..|+.+++.++.+|++|+++|.++..+.. ..+..+ ..+.+   +.++++.||+|...
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e   67 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE   67 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence            5899999999999999999999999999987643321 111111 11233   66788889987543

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=94.69  E-value=0.16  Score=48.10  Aligned_cols=91  Identities=20%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCHHh-h---c-CcCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDT-M---L-PKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l~e-l---l-~~aDvVi~~~p~~  184 (304)
                      .|++|.|.|.|.+|..+++.++..|.+ |++.+++..+.+.+++.|+...     .++.+ +   . ...|+++-++...
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~  265 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP  265 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence            578999999999999999999999995 8888876655555555554221     12211 1   1 3578888776532


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +.     -...++.++++..+|.++..
T Consensus       266 ~~-----~~~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         266 AV-----IEQAVDALAPRGTLALVGAP  287 (365)
T ss_pred             HH-----HHHHHHHhccCCEEEEeCcC
Confidence            21     14667778888888888753

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK05442 malate dehydrogenase; Provisional

Probab=94.68  E-value=0.26  Score=46.57  Aligned_cols=65  Identities=20%  Similarity=0.239  Sum_probs=43.1

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCCCC---hhHHHhc---------CceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~~~---~~~~~~~---------g~~~~~~l~ell~~aDvV  177 (304)
                      .+|+|||. |.+|..+|..|...|.       ++..+|.....   ...+.++         ......+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999988765433       78999974321   1111110         122223556789999999


Q ss_pred             EEcCC
Q 021995          178 VVNTP  182 (304)
Q Consensus       178 i~~~p  182 (304)
                      +++.-
T Consensus        85 VitaG   89 (326)
T PRK05442         85 LLVGA   89 (326)
T ss_pred             EEeCC
Confidence            98764

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=94.68  E-value=0.15  Score=49.26  Aligned_cols=95  Identities=16%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p  182 (304)
                      -.|++|.|.|.|.+|..+++.++.+|.+++ +.+++....+.++++|+..+     .++.    ++.  ...|+++-++.
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G  263 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG  263 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence            358899999999999999999999999854 45665556667777776422     1222    222  24788888775


Q ss_pred             CChh----------hhccccHHHHhcCCCCCEEEEcCC
Q 021995          183 LTEK----------TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       183 ~~~~----------t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ....          ....+ .+.++.++++..++.+|-
T Consensus       264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       264 FEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CccccccccccccchHHHH-HHHHHHhhCCCEEEEeee
Confidence            3210          00112 456788888888888874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=94.67  E-value=0.11  Score=48.50  Aligned_cols=89  Identities=20%  Similarity=0.232  Sum_probs=60.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p~  183 (304)
                      .|.+|.|.|.|.+|+.+++.++.+| .+|++++++..+....+++|+...     .++    .++.  ...|+++-++..
T Consensus       166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (345)
T cd08286         166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI  245 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence            5789999999999999999999999 788888775544445555554211     111    1222  247888877642


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .+.     -...++.++++..+|+++
T Consensus       246 ~~~-----~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         246 PAT-----FELCQELVAPGGHIANVG  266 (345)
T ss_pred             HHH-----HHHHHHhccCCcEEEEec
Confidence            111     245557788888888876

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd00704 MDH Malate dehydrogenase

Probab=94.66  E-value=0.17  Score=47.68  Aligned_cols=65  Identities=18%  Similarity=0.151  Sum_probs=43.1

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCC--CChhH-----HHhc-----CceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQL-----EKET-----GAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~--~~~~~-----~~~~-----g~~~~~~l~ell~~aDvV  177 (304)
                      .+|+|+|. |.+|+.++..|...|.       ++..+|++.  ...+.     ....     +.....+..+.+++||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999998875442       588999864  21110     0000     111114566889999999


Q ss_pred             EEcCC
Q 021995          178 VVNTP  182 (304)
Q Consensus       178 i~~~p  182 (304)
                      +++.-
T Consensus        81 VitAG   85 (323)
T cd00704          81 ILVGA   85 (323)
T ss_pred             EEeCC
Confidence            88753

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.65  E-value=0.1  Score=48.99  Aligned_cols=76  Identities=18%  Similarity=0.264  Sum_probs=51.1

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+|+|+| .|-.|+++.+.|.... .++.....+..+ .      .   .+.++.++++|++++++|....      .+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~s------~~~   66 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDAA------REA   66 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHHH------HHH
Confidence            4899999 6999999999997653 455544432211 0      1   2334566789999999995422      333


Q ss_pred             HhcC-CCCCEEEEcC
Q 021995          196 IAKM-KKGVLIVNNA  209 (304)
Q Consensus       196 l~~m-k~g~ilVn~~  209 (304)
                      .+.+ +.|+.+||.|
T Consensus        67 ~~~~~~~g~~VIDlS   81 (313)
T PRK11863         67 VALIDNPATRVIDAS   81 (313)
T ss_pred             HHHHHhCCCEEEECC
Confidence            3333 5688999998

>PRK08324 short chain dehydrogenase; Validated

Probab=94.64  E-value=0.054  Score=56.12  Aligned_cols=40  Identities=28%  Similarity=0.302  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995          113 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus       113 ~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      ..+.|+++.|.| .|.||+.+++.|...|++|++.+++...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence            357899999999 5999999999999999999999987643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.60  E-value=0.051  Score=54.92  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh---------cC------ce-------ecCCHHhhc
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------TG------AK-------FEEDLDTML  171 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~---------~g------~~-------~~~~l~ell  171 (304)
                      -.|++|.|.|. |.||+.+++.|...|++|.+++|+.........         .|      +.       ..+++++.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            46889999995 999999999999999999999987543321110         01      11       112344567


Q ss_pred             CcCCEEEEcCCC
Q 021995          172 PKCDIVVVNTPL  183 (304)
Q Consensus       172 ~~aDvVi~~~p~  183 (304)
                      .++|+|+.+...
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            889999888643

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=94.58  E-value=0.095  Score=47.38  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C--C----HHhhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E--D----LDTML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~--~----l~ell--~~aDvVi~~~p~  183 (304)
                      .|++|.|.| .|.+|+.+++.++.+|.+|++.+++....+.+++.|+...   .  +    +.++.  ...|+++-++..
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~  215 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGK  215 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCc
Confidence            578999999 6999999999999999999988876544445555554211   0  1    11222  236777766542


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                       .     .....++.++++..++.++..
T Consensus       216 -~-----~~~~~~~~l~~~g~~v~~g~~  237 (320)
T cd05286         216 -D-----TFEGSLDSLRPRGTLVSFGNA  237 (320)
T ss_pred             -H-----hHHHHHHhhccCcEEEEEecC
Confidence             1     124566777888888877654

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=94.55  E-value=0.39  Score=45.52  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=66.5

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccccccccccc-CCCEEEEEeeC-------hh
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDL-EGKTVGTVGCG-------RI  128 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L-~g~~vgIIG~G-------~I  128 (304)
                      .++..+++|.|.... ..++  .+|+=++.+.+++                    | .+ .|++|+|+|.|       ++
T Consensus       132 ~a~~s~vPVINa~~~-~HPt--QaLaDl~Ti~e~~--------------------g-~~~~g~ki~i~~~gd~~~~~~~v  187 (335)
T PRK04523        132 FAKYSTVPVINMETI-THPC--QELAHALALQEHF--------------------G-TTLRGKKYVLTWTYHPKPLNTAV  187 (335)
T ss_pred             HHHhCCCCEEECCCC-CChH--HHHHHHHHHHHHh--------------------C-CccCCCEEEEEEeccCcccccHH
Confidence            455678999998553 2221  2344445554421                    1 36 78999887644       78


Q ss_pred             hHHHHHHhccCCCeEEEEcC-CCC--ChhH-------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 021995          129 GKLLLQRLKPFNCNLLYHDR-VKM--DPQL-------EKETG--AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       129 G~~lA~~l~~~G~~V~~~dr-~~~--~~~~-------~~~~g--~~~~~~l~ell~~aDvVi~~~  181 (304)
                      .++++..+..+|++|.+..| ...  +.+.       ++..|  +....++++.++++|+|..-.
T Consensus       188 ~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  252 (335)
T PRK04523        188 ANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS  252 (335)
T ss_pred             HHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence            88999989999999999988 431  2211       12334  345679999999999998754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=94.48  E-value=0.11  Score=46.58  Aligned_cols=88  Identities=23%  Similarity=0.383  Sum_probs=61.2

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----Cce--e-cCCHHhhcC---cCCEEEE-----
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK--F-EEDLDTMLP---KCDIVVV-----  179 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~--~-~~~l~ell~---~aDvVi~-----  179 (304)
                      +.|++|.=||||  |..++.-+...|.+|++.|-+....+.++..    |+.  + ..+.+++.+   +.|+|++     
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            789999999998  4478888888899999999987766666532    332  2 234556555   7999876     


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEc
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      |+|..+    .+-....+++|||++++-.
T Consensus       136 Hv~dp~----~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         136 HVPDPE----SFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             ccCCHH----HHHHHHHHHcCCCcEEEEe
Confidence            455321    1335577888999877643

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.46  E-value=0.07  Score=51.24  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~  149 (304)
                      ..|.+++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46899999999999999999999999997 68888875

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.43  E-value=0.14  Score=45.29  Aligned_cols=37  Identities=30%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 8999999999999999999888754

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=94.43  E-value=0.18  Score=47.48  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=42.1

Q ss_pred             EEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCCCC--hh-HHHhc---------CceecCCHHhhcCcCCEEE
Q 021995          119 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD--PQ-LEKET---------GAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~~~--~~-~~~~~---------g~~~~~~l~ell~~aDvVi  178 (304)
                      +|+|||. |.+|..++..|...|.       ++..+|+.+..  .+ ...++         ......+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999998876443       58899985421  11 11000         1111124467899999999


Q ss_pred             EcCC
Q 021995          179 VNTP  182 (304)
Q Consensus       179 ~~~p  182 (304)
                      ++.-
T Consensus        81 itAG   84 (324)
T TIGR01758        81 LVGA   84 (324)
T ss_pred             EcCC
Confidence            8754

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=94.42  E-value=0.14  Score=49.08  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=38.8

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA  161 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~  161 (304)
                      -.|.+|.|.|. |.+|..+++.++.+|+++++.+++....+.++++|+
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~  239 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGA  239 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCC
Confidence            35789999997 999999999999999998888876655566666664

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=94.42  E-value=0.16  Score=47.05  Aligned_cols=88  Identities=19%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             CCEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceec----CCHHh----hc-CcCCEEEEcCCCCh
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE----EDLDT----ML-PKCDIVVVNTPLTE  185 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~----~~l~e----ll-~~aDvVi~~~p~~~  185 (304)
                      |.+|.|+| .|.+|+.+++.++..| .+|++.+.+....+.++++|+...    .+..+    .- ...|+++-+++...
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~  229 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQ  229 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHH
Confidence            78999999 5999999999999999 999998876655555665654211    11211    11 24677776654211


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                           .....+..++++..+|+++
T Consensus       230 -----~~~~~~~~l~~~g~~v~~g  248 (336)
T cd08252         230 -----HWDAMAELIAPQGHICLIV  248 (336)
T ss_pred             -----HHHHHHHHhcCCCEEEEec
Confidence                 1245667778888888775

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>PRK13529 malate dehydrogenase; Provisional

Probab=94.39  E-value=1.5  Score=44.25  Aligned_cols=146  Identities=11%  Similarity=0.105  Sum_probs=100.0

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHh
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL  136 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l  136 (304)
                      .--+..|.+.|..=   .-+|--+++.+|+.+|-                    .+..|...+|.|.|.|..|-.+|+.+
T Consensus       258 ~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgiGia~ll  314 (563)
T PRK13529        258 ERYRDEICTFNDDI---QGTGAVTLAGLLAALKI--------------------TGEPLSDQRIVFLGAGSAGCGIADQI  314 (563)
T ss_pred             HHhccCCCeecccc---chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHH
Confidence            33445788887653   34566678888988882                    24568999999999999999999988


Q ss_pred             cc----CCC-------eEEEEcCCCC---C---h-----hHHHhcCc-------eecCCHHhhcCcC--CEEEEcCCCCh
Q 021995          137 KP----FNC-------NLLYHDRVKM---D---P-----QLEKETGA-------KFEEDLDTMLPKC--DIVVVNTPLTE  185 (304)
Q Consensus       137 ~~----~G~-------~V~~~dr~~~---~---~-----~~~~~~g~-------~~~~~l~ell~~a--DvVi~~~p~~~  185 (304)
                      ..    .|.       +++.+|+...   .   .     ..++...-       ....+|.|+++.+  |+++=+..   
T Consensus       315 ~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~---  391 (563)
T PRK13529        315 VAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSG---  391 (563)
T ss_pred             HHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecC---
Confidence            75    577       7889987631   1   0     11111100       0114789999988  98875432   


Q ss_pred             hhhccccHHHHhcCCC---CCEEEEcCCCchhchHHHHHHHH--cCCce
Q 021995          186 KTRGMFDKDRIAKMKK---GVLIVNNARGAIMDTQAVVDACS--SGHIA  229 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~---g~ilVn~~rg~~vd~~aL~~aL~--~g~i~  229 (304)
                       .-+.+.++.++.|.+   ..++.-.|+....-|-.-.+|.+  +|+..
T Consensus       392 -~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai  439 (563)
T PRK13529        392 -QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRAL  439 (563)
T ss_pred             -CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEE
Confidence             236889999999976   89999999988755544444444  45433

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.38  E-value=0.058  Score=49.68  Aligned_cols=65  Identities=14%  Similarity=0.131  Sum_probs=45.6

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|.|.| .|.+|+.+++.|...|++|++.+|++.........+++.       .+++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4788998 599999999999999999999998654322211122221       1245677888999887654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.37  E-value=0.16  Score=47.93  Aligned_cols=90  Identities=19%  Similarity=0.148  Sum_probs=66.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCCH----------HhhcC-cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL----------DTMLP-KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l----------~ell~-~aDvVi~~~p~  183 (304)
                      .|.++.|+|+|.+|-+..+.++..|+. +++.|.++.+.+.++++|+...-+.          .++-. .+|+.+-+.-.
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~  264 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN  264 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence            589999999999999999999998985 8899999988999999987432111          23444 68888877764


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .+.     -++.|....++...|-++=
T Consensus       265 ~~~-----~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         265 VEV-----MRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             HHH-----HHHHHHHHhcCCeEEEEec
Confidence            432     1556666666666555553

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.36  E-value=0.1  Score=53.62  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E  165 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~  165 (304)
                      ..|++|.|||.|..|...|..|+..|++|++|++.+..                     .+.....|++..        .
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            36999999999999999999999999999999876521                     122344454321        2


Q ss_pred             CHHhhcCcCCEEEEcCCCC
Q 021995          166 DLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       166 ~l~ell~~aDvVi~~~p~~  184 (304)
                      +++++....|.|++++...
T Consensus       388 ~~~~l~~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSDLTSEYDAVFIGVGTY  406 (639)
T ss_pred             CHHHHHhcCCEEEEeCCCC
Confidence            4556777899999987643

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=94.35  E-value=0.14  Score=47.23  Aligned_cols=89  Identities=18%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             CCC-EEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CC----HHhhc-CcCCEEEEcCCCCh
Q 021995          116 EGK-TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED----LDTML-PKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~-~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~----l~ell-~~aDvVi~~~p~~~  185 (304)
                      .|. +|.|.|. |.+|+.+++.++.+|++|++...+....+.+++.|+...   .+    +..+. ...|+++-++... 
T Consensus       144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~-  222 (323)
T TIGR02823       144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGH-  222 (323)
T ss_pred             CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccHH-
Confidence            466 9999998 999999999999999998877665554555555554211   11    11121 1357776665421 


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                          . ..+.++.++++..+|+++.
T Consensus       223 ----~-~~~~~~~l~~~G~~v~~g~  242 (323)
T TIGR02823       223 ----T-LANVLAQLKYGGAVAACGL  242 (323)
T ss_pred             ----H-HHHHHHHhCCCCEEEEEcc
Confidence                1 2467778888888888874

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=94.32  E-value=0.14  Score=47.91  Aligned_cols=91  Identities=26%  Similarity=0.279  Sum_probs=60.3

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CC-------HHhhcC--cCCEEEE
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----ED-------LDTMLP--KCDIVVV  179 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~-------l~ell~--~aDvVi~  179 (304)
                      -.|++|.|.|.|.+|..+++.++.+|.+ |++..++....+..+++|....     .+       +.+...  ..|+|+-
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld  240 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE  240 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence            4688999999999999999999999998 8888766544444444554211     11       222332  2688877


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +....+     .-...++.++++..+|.++-
T Consensus       241 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         241 CTGAES-----CIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             CCCCHH-----HHHHHHHHhhcCCEEEEEcc
Confidence            765321     12456777888888887763

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=94.29  E-value=0.39  Score=44.62  Aligned_cols=95  Identities=18%  Similarity=0.285  Sum_probs=69.7

Q ss_pred             cCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCCh-----h----HHHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 021995          115 LEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDP-----Q----LEKETG--AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~-----~----~~~~~g--~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      |.|+|+..+|=| +++.++......+|++|.+..|....+     +    .+++.|  +...+++++.++.+|+|..-+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            899999999965 589999998899999999988765222     1    122234  4556799999999999987654


Q ss_pred             CC--hhhh-----------ccccHHHHhcCCCCCEEEEcC
Q 021995          183 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~--~~t~-----------~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .+  ++.+           .-+|.++++.-+++++|..|-
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL  270 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL  270 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence            32  2221           346778888888888888884

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=94.23  E-value=0.14  Score=47.13  Aligned_cols=88  Identities=13%  Similarity=0.091  Sum_probs=57.6

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C--C----HHhhcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E--D----LDTMLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~--~----l~ell~--~aDvVi~~~p~  183 (304)
                      .|.+|.|.|. |.+|+.+++.++.+|++|++...+....+..++.|+...   .  +    +.++..  ..|+++-++..
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  218 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGG  218 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCC
Confidence            5789999986 999999999999999999888765544444444454211   0  1    112222  47777766542


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .     . ..+.++.++++..+|.++
T Consensus       219 ~-----~-~~~~~~~l~~~g~~v~~g  238 (324)
T cd08292         219 K-----L-AGELLSLLGEGGTLVSFG  238 (324)
T ss_pred             h-----h-HHHHHHhhcCCcEEEEEe
Confidence            1     1 145677777777777775

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.17  E-value=0.035  Score=42.62  Aligned_cols=66  Identities=20%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             CEEEEEeeChhhHHHHHHhc-cCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLK-PFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~-~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~  184 (304)
                      .++.|+|+|+.|++++..+. ..|+. +.++|.++..... .-.|+..+.+++++.+.  .|+-++++|..
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-~i~gipV~~~~~~l~~~~~i~iaii~VP~~   73 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-EIGGIPVYGSMDELEEFIEIDIAIITVPAE   73 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-EETTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-EECCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence            47999999999999985443 45666 3466665532221 11244444467666555  99999999943

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=94.17  E-value=0.2  Score=46.42  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             CCCEEEEE--eeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCC
Q 021995          116 EGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgII--G~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p  182 (304)
                      .+.++.|+  |.|.+|..+++.++.+|.+|++.+++..+.+.++++|+..+     .++.    ++.  ...|+++-++.
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g  221 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG  221 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence            45566665  88999999999999999999988877666666666665321     1221    222  24788877664


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .. .   .  ...+..++++..+|.++
T Consensus       222 ~~-~---~--~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         222 GG-L---T--GQILLAMPYGSTLYVYG  242 (324)
T ss_pred             cH-H---H--HHHHHhhCCCCEEEEEE
Confidence            21 1   1  34567788888888876

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=94.14  E-value=1.6  Score=40.78  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC-hhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG-RIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G-~IG~~lA~~  135 (304)
                      .++..+++|.|.-.....++  .+|+=++.+..++                    | .+.|++|+++|-+ ++.++++..
T Consensus       110 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~--------------------g-~l~g~kva~vGD~~~v~~S~~~~  166 (302)
T PRK14805        110 LAEHGSVPVINALCDLYHPC--QALADFLTLAEQF--------------------G-DVSKVKLAYVGDGNNVTHSLMYG  166 (302)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEEcCCCccHHHHHHH
Confidence            35567899999855332221  2344444443311                    1 4789999999974 577888999


Q ss_pred             hccCCCeEEEEcCCCC-Chh--------HHHhcCce--ecCCHHhhcCcCCEEEEcC
Q 021995          136 LKPFNCNLLYHDRVKM-DPQ--------LEKETGAK--FEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~--------~~~~~g~~--~~~~l~ell~~aDvVi~~~  181 (304)
                      +..+|++|.+..|... +.+        .++..|..  ..+++ +.++++|+|....
T Consensus       167 ~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        167 AAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence            9999999999987542 221        12334543  34565 5689999998743

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=94.13  E-value=0.16  Score=47.56  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=60.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~  183 (304)
                      .|.+|.|.|.|.+|+.+++.++..|+. |++.++++.+.....++|+...     .++    .++..  ..|+++-+++.
T Consensus       174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~  253 (350)
T cd08256         174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGH  253 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            578999999999999999999999987 5677776554555555664221     111    22222  37888877653


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ...     -...++.++++..+|+++
T Consensus       254 ~~~-----~~~~~~~l~~~G~~v~~g  274 (350)
T cd08256         254 PSA-----VEQGLNMIRKLGRFVEFS  274 (350)
T ss_pred             hHH-----HHHHHHHhhcCCEEEEEc
Confidence            211     145677788888888875

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=94.13  E-value=0.075  Score=50.41  Aligned_cols=85  Identities=20%  Similarity=0.246  Sum_probs=49.9

Q ss_pred             EEEEEe-eChhhHHHHHHhccCCCe---EEEEcCCCCChhHHHhcCce-ecCCH-HhhcCcCCEEEEcCCCChhhhcccc
Q 021995          119 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       119 ~vgIIG-~G~IG~~lA~~l~~~G~~---V~~~dr~~~~~~~~~~~g~~-~~~~l-~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      +|+|+| .|.+|+.+++.|...++.   +.++.+.....+.....+.. .+.++ .+.+.++|+++.|+|....      
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s------   74 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVS------   74 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHH------
Confidence            589999 799999999999886665   33333322111111111211 11111 2345889999999985422      


Q ss_pred             HHHHhc-CCCCCEEEEcC
Q 021995          193 KDRIAK-MKKGVLIVNNA  209 (304)
Q Consensus       193 ~~~l~~-mk~g~ilVn~~  209 (304)
                      .+..+. ++.|+.+||.+
T Consensus        75 ~~~a~~~~~~G~~VID~s   92 (339)
T TIGR01296        75 KEFAPKAAKCGAIVIDNT   92 (339)
T ss_pred             HHHHHHHHHCCCEEEECC
Confidence            222222 35688899887

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.09  E-value=0.14  Score=50.26  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=67.6

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-----HHHhcCceec--CCHH-----hhcCcCCEEEEcCCCChh
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-----~~~~~g~~~~--~~l~-----ell~~aDvVi~~~p~~~~  186 (304)
                      +|.|||.|..|.+.|+.|...|++|.++|+...+..     ...+.|+...  ...+     +.+.+.|.|+......+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            689999999999999999999999999997653211     1234455432  1111     467789988874322221


Q ss_pred             hh----------ccccH-HHH-hcCCC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          187 TR----------GMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       187 t~----------~~i~~-~~l-~~mk~-g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      ..          .++.+ +.+ ..+++ ..+-|--+.|+.-...-|.+.|+...
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            11          11222 222 33333 34556666788888887777777643

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=94.09  E-value=0.21  Score=46.78  Aligned_cols=89  Identities=20%  Similarity=0.207  Sum_probs=57.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-C----C----HHhhcC-cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----D----LDTMLP-KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-~----~----l~ell~-~aDvVi~~~p~~  184 (304)
                      .|.+|.|.|.|.+|..+++.++..|+ +|++.+++....+...++|+..+ .    +    +.+... ..|+++-+.+..
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~  254 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNS  254 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCH
Confidence            58899999999999999999999999 67777765544455555554211 0    1    112222 367777655421


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..     -...+..|+++..+|.++
T Consensus       255 ~~-----~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         255 AT-----ASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             HH-----HHHHHHHhhcCCeEEEEC
Confidence            11     245567777777777764

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=94.08  E-value=0.13  Score=50.49  Aligned_cols=108  Identities=17%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             EEEEeeChhhHH-HHHHhccCCCeEEEEcCCCCC-hhHHHhcCceecCC-HHhhcCcCCEEEEcC--CC-Chhhh-----
Q 021995          120 VGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEED-LDTMLPKCDIVVVNT--PL-TEKTR-----  188 (304)
Q Consensus       120 vgIIG~G~IG~~-lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~-l~ell~~aDvVi~~~--p~-~~~t~-----  188 (304)
                      +-+||.|.+|.+ +|+.|+..|++|.++|..... .+..++.|+..... -.+.+.++|+|+..-  |. +|...     
T Consensus         2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~   81 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER   81 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence            679999999998 999999999999999975432 12233446554321 124567899988752  32 22211     


Q ss_pred             --ccccH-HHHhc-CC-CCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          189 --GMFDK-DRIAK-MK-KGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       189 --~~i~~-~~l~~-mk-~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                        .++.+ +++.. ++ ...+-|--+.|+.-...-+...|+...
T Consensus        82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  125 (448)
T TIGR01082        82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG  125 (448)
T ss_pred             CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence              12322 33323 32 335566666799888888888887654

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.06  E-value=0.1  Score=49.90  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             cccccCCCEEEEEe-eChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhc-------Ccee-------cCCHHhhcCcC
Q 021995          111 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKET-------GAKF-------EEDLDTMLPKC  174 (304)
Q Consensus       111 ~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~-------g~~~-------~~~l~ell~~a  174 (304)
                      .|..++.++|.|.| .|-||+.+++.|... |++|++++++..........       +++.       ...++++++++
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            35567888999999 599999999999877 69999999764322111111       1111       12456778889


Q ss_pred             CEEEEcC
Q 021995          175 DIVVVNT  181 (304)
Q Consensus       175 DvVi~~~  181 (304)
                      |+|+-+.
T Consensus        88 d~ViHlA   94 (386)
T PLN02427         88 DLTINLA   94 (386)
T ss_pred             CEEEEcc
Confidence            9886554

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.04  E-value=0.14  Score=47.22  Aligned_cols=90  Identities=22%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh---h--cCcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT---M--LPKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e---l--l~~aDvVi~~~p~~~  185 (304)
                      .|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+..++.|+...     .+..+   .  -...|+++.++...+
T Consensus       165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~  244 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQP  244 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHH
Confidence            5679999999999999999999999999988876654555555554211     11111   1  134788777654221


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                           .-.+.+..|++++.+|.++-
T Consensus       245 -----~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         245 -----TFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             -----HHHHHHHHhhcCCEEEEECC
Confidence                 12456778888888888864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=94.03  E-value=0.15  Score=47.58  Aligned_cols=89  Identities=21%  Similarity=0.197  Sum_probs=57.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~  183 (304)
                      .|.+|.|.|.|.+|+.+++.++..|.+ +++.+++....+..+++|+...     .+.    ..+..  ..|+++-++..
T Consensus       168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~  247 (345)
T cd08287         168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGT  247 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCC
Confidence            578999999999999999999999996 7777765544445555564221     011    11222  37777766532


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      . .   . -...++.++++..++..+
T Consensus       248 ~-~---~-~~~~~~~l~~~g~~v~~g  268 (345)
T cd08287         248 Q-E---S-MEQAIAIARPGGRVGYVG  268 (345)
T ss_pred             H-H---H-HHHHHHhhccCCEEEEec
Confidence            1 1   1 145566677777777765

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.03  E-value=0.33  Score=50.10  Aligned_cols=69  Identities=20%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------CC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------ED  166 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~~  166 (304)
                      .+++|.|||.|..|-..|..|...|++|+++++....                     .+.....|++..        .+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~  271 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT  271 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence            6789999999999999999999999999999875421                     112234454321        13


Q ss_pred             HHhhcCcCCEEEEcCCCC
Q 021995          167 LDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       167 l~ell~~aDvVi~~~p~~  184 (304)
                      ++++....|.|++++...
T Consensus       272 ~~~~~~~~DaVilAtGa~  289 (652)
T PRK12814        272 LEELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             HHHHHhhcCEEEEEcCCC
Confidence            455555699999987654

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=94.02  E-value=2.1  Score=43.23  Aligned_cols=173  Identities=11%  Similarity=0.064  Sum_probs=108.7

Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhcc-
Q 021995           60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP-  138 (304)
Q Consensus        60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~-  138 (304)
                      +..|.+.|..=   .-+|-.+++.+|+.+|-                    .+..|...+|.|.|.|..|-.+|+.+.. 
T Consensus       263 r~~i~~FnDDi---QGTaaV~lAgll~Alr~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~  319 (559)
T PTZ00317        263 QNKYRCFNDDI---QGTGAVIAAGFLNALKL--------------------SGVPPEEQRIVFFGAGSAAIGVANNIADL  319 (559)
T ss_pred             ccCCCEecccc---hhHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence            34588777653   44566778889998883                    2346899999999999999999998863 


Q ss_pred             ---CCC-------eEEEEcCCCC----C---hh-----HHHhcCcee---cCCHHhhcCcC--CEEEEcCCCChhhhccc
Q 021995          139 ---FNC-------NLLYHDRVKM----D---PQ-----LEKETGAKF---EEDLDTMLPKC--DIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       139 ---~G~-------~V~~~dr~~~----~---~~-----~~~~~g~~~---~~~l~ell~~a--DvVi~~~p~~~~t~~~i  191 (304)
                         .|.       +++.+|+...    .   ..     .++...-..   ..+|.|+++..  |+++=+..    ..+.+
T Consensus       320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~----~~g~F  395 (559)
T PTZ00317        320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSG----VGGVF  395 (559)
T ss_pred             HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecC----CCCCC
Confidence               577       6888887631    0   00     111110011   34899999998  99875432    13688


Q ss_pred             cHHHHhcCC---CCCEEEEcCCCchhchHHHHHHHH--cCCceEEEeecCCCCCCCCCCC---ccCCCCeEEccCCCc
Q 021995          192 DKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGHIAGYSGDVWNPQPAPKDHP---WRYMPNQAMTPHVSG  261 (304)
Q Consensus       192 ~~~~l~~mk---~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~lDV~~~ep~~~~~~---l~~~~nv~lTPHia~  261 (304)
                      .++.++.|.   +..++.-.|+....-|-.-.++.+  +|+...|.=--|  +|..-+..   .-+..|+++=|=++-
T Consensus       396 t~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf--~pv~~~G~~~~p~Q~NN~~iFPGigl  471 (559)
T PTZ00317        396 TEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPF--PPVTLNGKTIQPSQGNNLYVFPGVGL  471 (559)
T ss_pred             CHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCC--CCcccCCeeeccCcCcceeeccchhh
Confidence            899999987   489999999887544444444444  455332211111  12111111   123457888887653

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.00  E-value=0.11  Score=49.08  Aligned_cols=72  Identities=18%  Similarity=0.149  Sum_probs=48.9

Q ss_pred             cccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHH-Hhc----Ccee-------cCCHHhhcCcCCEE
Q 021995          111 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GAKF-------EEDLDTMLPKCDIV  177 (304)
Q Consensus       111 ~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~----g~~~-------~~~l~ell~~aDvV  177 (304)
                      .+++..+++|.|.| .|-||+.+++.|...|++|++.+++....... ...    .+..       ...+++++++.|+|
T Consensus         4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            35678999999999 59999999999999999999888754322211 110    1111       12345667788988


Q ss_pred             EEcCC
Q 021995          178 VVNTP  182 (304)
Q Consensus       178 i~~~p  182 (304)
                      +-+..
T Consensus        84 ih~A~   88 (353)
T PLN02896         84 FHVAA   88 (353)
T ss_pred             EECCc
Confidence            76553

>PLN02702 L-idonate 5-dehydrogenase

Probab=94.00  E-value=0.14  Score=48.38  Aligned_cols=90  Identities=16%  Similarity=0.182  Sum_probs=61.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-------CCHHh----h----cCcCCEEEE
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-------EDLDT----M----LPKCDIVVV  179 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-------~~l~e----l----l~~aDvVi~  179 (304)
                      .|.+|.|+|.|.+|..+++.++.+|++ |++.+++..+.+.++++|+...       .++.+    +    -...|+++-
T Consensus       181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid  260 (364)
T PLN02702        181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFD  260 (364)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEE
Confidence            678999999999999999999999986 6777775544455555664321       12222    1    124788887


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +......     -.+.++.++++..++.++.
T Consensus       261 ~~g~~~~-----~~~~~~~l~~~G~~v~~g~  286 (364)
T PLN02702        261 CVGFNKT-----MSTALEATRAGGKVCLVGM  286 (364)
T ss_pred             CCCCHHH-----HHHHHHHHhcCCEEEEEcc
Confidence            7653211     2566777888888888764

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.00  E-value=0.11  Score=49.11  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=24.4

Q ss_pred             EEEEEeeChhhHHHHHHhccC----CCeEEEEcC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR  148 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~----G~~V~~~dr  148 (304)
                      +|||+|+|+||+.+.+.|...    +++|...+.
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            589999999999999998754    378776654

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.99  E-value=0.12  Score=48.31  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=42.6

Q ss_pred             EEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc----------CceecCCHHhhcCcCCEEEEcCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~----------g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      +|+|||.|.+|..+|..|...|.  ++..+|.+....+ .+.++          .+....+-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            58999999999999998865554  6999998653221 11111          11111122467899999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.99  E-value=0.15  Score=45.44  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+.||++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999995 9999999999999999999998864

>cd05281 TDH Threonine dehydrogenase

Probab=93.99  E-value=0.17  Score=47.21  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH---HhhcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL---DTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l---~ell~--~aDvVi~~~p~~  184 (304)
                      .|.+|.|.|.|.+|+.+++.++.+|+ +|++.+++..+.+..+++|...+     .++   .++..  ..|+++-+....
T Consensus       163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~  242 (341)
T cd05281         163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNP  242 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCH
Confidence            57899999999999999999999999 68777655444444455554221     111   12222  477777766422


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ..     ..+.+..++++..++.++.
T Consensus       243 ~~-----~~~~~~~l~~~G~~v~~g~  263 (341)
T cd05281         243 KA-----IEQGLKALTPGGRVSILGL  263 (341)
T ss_pred             HH-----HHHHHHHhccCCEEEEEcc
Confidence            11     2455677788888887763

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK06182 short chain dehydrogenase; Validated

Probab=93.97  E-value=0.089  Score=47.54  Aligned_cols=67  Identities=18%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-------cCCEEEEc
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-------KCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-------~aDvVi~~  180 (304)
                      .++++.|.|. |.||+.+++.|...|++|++.+|+....+.....++...       ++++++++       ..|+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            4789999995 899999999999999999999986533322222222211       12233333       67999887


Q ss_pred             CC
Q 021995          181 TP  182 (304)
Q Consensus       181 ~p  182 (304)
                      ..
T Consensus        82 ag   83 (273)
T PRK06182         82 AG   83 (273)
T ss_pred             CC
Confidence            64

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=93.94  E-value=0.11  Score=49.08  Aligned_cols=64  Identities=17%  Similarity=0.096  Sum_probs=43.6

Q ss_pred             EEEEEee-ChhhHHHHHHhccCC-------CeEEEEcCCCCC--hhH-HHhc---------CceecCCHHhhcCcCCEEE
Q 021995          119 TVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMD--PQL-EKET---------GAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~~G-------~~V~~~dr~~~~--~~~-~~~~---------g~~~~~~l~ell~~aDvVi  178 (304)
                      +|+|+|. |.+|+.++..|...+       .+|..+|+....  .+. ..+.         .+....++.+.+++||+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            7999999 999999999987633       489999985421  110 0000         1112346678899999998


Q ss_pred             EcCC
Q 021995          179 VNTP  182 (304)
Q Consensus       179 ~~~p  182 (304)
                      .+.-
T Consensus        84 ~tAG   87 (325)
T cd01336          84 LVGA   87 (325)
T ss_pred             EeCC
Confidence            8754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=93.93  E-value=0.083  Score=47.80  Aligned_cols=90  Identities=19%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             EEEEEeeChhhHHHHHHhccCCC----eEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~----~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++|+||.|.|..++++-+.+.|.    +++.+.++...... ++..|++.+.+-.+.++.+|++++++-  |.   + -.
T Consensus         2 ~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~---~-i~   75 (267)
T KOG3124|consen    2 KVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQ---V-IE   75 (267)
T ss_pred             ceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--ch---h-HH
Confidence            68999999999999999988774    46666664433344 566777665455788889999999984  21   1 13


Q ss_pred             HHHhc----CCCCCEEEEcCCCchh
Q 021995          194 DRIAK----MKKGVLIVNNARGAIM  214 (304)
Q Consensus       194 ~~l~~----mk~g~ilVn~~rg~~v  214 (304)
                      ..+..    ...+.+++.+.-|..+
T Consensus        76 ~vls~~~~~~~~~~iivS~aaG~tl  100 (267)
T KOG3124|consen   76 SVLSEIKPKVSKGKIIVSVAAGKTL  100 (267)
T ss_pred             HHhhcCccccccceEEEEEeecccH
Confidence            33333    4556788888877654

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.91  E-value=0.096  Score=56.48  Aligned_cols=93  Identities=9%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC-------------------------ChhHHHhcC---------
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-------------------------DPQLEKETG---------  160 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~-------------------------~~~~~~~~g---------  160 (304)
                      +.-.++.|+|.|++|+..++.+..+|++ . .++...                         ..+.....+         
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~  278 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD  278 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence            4457899999999999999999988776 2 222110                         000000000         


Q ss_pred             -----ceecCC-HHhhcCcCCEEEEcCCCChhhhccccHH-HHhcCCCCC----EEEEcC
Q 021995          161 -----AKFEED-LDTMLPKCDIVVVNTPLTEKTRGMFDKD-RIAKMKKGV----LIVNNA  209 (304)
Q Consensus       161 -----~~~~~~-l~ell~~aDvVi~~~p~~~~t~~~i~~~-~l~~mk~g~----ilVn~~  209 (304)
                           -.+.+. +++.++.+|+++.|+-..+.+..++.++ ..+.||+|.    +++|++
T Consensus       279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                 001111 3568889999999997777788889888 778899998    899886

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.91  E-value=0.21  Score=47.38  Aligned_cols=107  Identities=18%  Similarity=0.295  Sum_probs=61.0

Q ss_pred             CEEEEEeeChhhHHHHHHhcc--------CC--CeEEEE-cCCC-------CChhHHH----hcCc-e-e-------cCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLLYH-DRVK-------MDPQLEK----ETGA-K-F-------EED  166 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~--------~G--~~V~~~-dr~~-------~~~~~~~----~~g~-~-~-------~~~  166 (304)
                      .+|+|+|||++|+.+++.|..        +|  .+|.++ |++.       ...+...    +.+. . .       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            489999999999999998865        56  555533 4431       1111111    1110 0 0       115


Q ss_pred             HHhhc--CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995          167 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  229 (304)
Q Consensus       167 l~ell--~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~  229 (304)
                      +++++  ..+|+|+-+.+..+ .    ..-..+.++.|.-+|-...|.+- ..++|.+..+++...
T Consensus        83 ~~ell~~~~~DVvVd~t~~~~-a----~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~  143 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDKN-A----HEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP  143 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcHH-H----HHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence            67777  47999997775321 1    12333456677777766665443 455666655555443

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=93.91  E-value=0.24  Score=46.16  Aligned_cols=89  Identities=24%  Similarity=0.274  Sum_probs=60.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec--------CCHHhhcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE--------EDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~--~aDvVi~~~p~~  184 (304)
                      .|.+|.|.|.|.+|+.+++.++.+|.+ |++.+++....+...+.|....        ..+.....  ..|+++-+....
T Consensus       159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~  238 (343)
T cd08236         159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSP  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCH
Confidence            467999999999999999999999998 8888876544444444453211        01122332  378888776421


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .     .....+..|+++..++.++
T Consensus       239 ~-----~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         239 A-----TIEQALALARPGGKVVLVG  258 (343)
T ss_pred             H-----HHHHHHHHhhcCCEEEEEc
Confidence            1     1245677788888888886

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.90  E-value=0.084  Score=38.79  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      ++.|||.|.+|-.+|..|+.+|.+|+.+.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999999999999999999999999988763

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.88  E-value=2.9  Score=42.41  Aligned_cols=168  Identities=13%  Similarity=0.085  Sum_probs=108.4

Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhcc-
Q 021995           60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP-  138 (304)
Q Consensus        60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~-  138 (304)
                      +..|.+.|..=   .-+|--+++.+|+.+|-                    .+..|...+|.|+|.|..|-.+|+.+.. 
T Consensus       287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~  343 (581)
T PLN03129        287 RTTHLCFNDDI---QGTAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALA  343 (581)
T ss_pred             ccCCCEecccc---chHHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHH
Confidence            45788777653   44566678888888883                    2446899999999999999999998876 


Q ss_pred             ----CCC-------eEEEEcCCCC-----C--h-----hHHHhcCceecCCHHhhcCc--CCEEEEcCCCChhhhccccH
Q 021995          139 ----FNC-------NLLYHDRVKM-----D--P-----QLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       139 ----~G~-------~V~~~dr~~~-----~--~-----~~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~~~t~~~i~~  193 (304)
                          .|.       +++.+|+...     .  .     ..++.  .....+|.|+++.  .|+++=+..    .-+++.+
T Consensus       344 ~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~--~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~  417 (581)
T PLN03129        344 MSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD--HEPGASLLEAVKAIKPTVLIGLSG----VGGTFTK  417 (581)
T ss_pred             HHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh--cccCCCHHHHHhccCCCEEEEecC----CCCCCCH
Confidence                466       6888887641     0  1     11111  1234589999998  899875442    1268889


Q ss_pred             HHHhcCC---CCCEEEEcCCCchhchHHHHHHHH--cCCceEEEeecCCCCCCCC---CC---CccCCCCeEEccCCCc
Q 021995          194 DRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGHIAGYSGDVWNPQPAPK---DH---PWRYMPNQAMTPHVSG  261 (304)
Q Consensus       194 ~~l~~mk---~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~lDV~~~ep~~~---~~---~l~~~~nv~lTPHia~  261 (304)
                      +.++.|.   +..++.-.|.....-|-.-.++.+  +|+...|     ..-|.++   +.   ..-+..|+++=|=++-
T Consensus       418 evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~A-----tGSPf~pv~~~Gr~~~p~Q~NN~~iFPGigl  491 (581)
T PLN03129        418 EVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFA-----SGSPFDPVEYNGKTFHPGQANNAYIFPGIGL  491 (581)
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEE-----eCCCCCCeeeCCeeecCccccceeeccchhh
Confidence            9999995   889999999887444433333333  3553322     1123221   10   1123457888887753

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=93.87  E-value=0.11  Score=50.36  Aligned_cols=37  Identities=22%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~  149 (304)
                      ..|...+|.|||+|.+|..+++.|...|.. +..+|..
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            368999999999999999999999988874 7788764

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=93.85  E-value=0.19  Score=46.87  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=61.1

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p  182 (304)
                      ..|.+|.|.|.|.+|+.+++.++..|.+ |++.++++.+.+..+++|+...     .++    .++.  +..|+++-+..
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g  239 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSG  239 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCC
Confidence            3688999999999999999999999997 8777665544444555554221     122    1222  24788877654


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ...    . ..+.++.|++++.++.++.
T Consensus       240 ~~~----~-~~~~~~~l~~~g~~v~~g~  262 (340)
T TIGR00692       240 APK----A-LEQGLQAVTPGGRVSLLGL  262 (340)
T ss_pred             CHH----H-HHHHHHhhcCCCEEEEEcc
Confidence            221    1 2456778888888888874

E. coli His-90 modulates substrate specificity and is believed part of the active site.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		1e-120
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		1e-120
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		1e-63
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		1e-62
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		9e-61
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		2e-60
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		2e-60
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		2e-57
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		2e-57
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		1e-25
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		1e-25
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		2e-25
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		6e-24
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-23
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-23
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		5e-23
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-22
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		2e-22
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		5e-22
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		3e-20
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		3e-20
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		4e-19
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-17
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		5e-17
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		1e-16
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		2e-16
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-16
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-16
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		1e-15
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		2e-15
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		2e-15
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		2e-15
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		3e-15
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		4e-15
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		6e-15
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		6e-15
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		8e-15
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		3e-14
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		3e-14
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		4e-14
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		9e-14
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		1e-13
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-13
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		3e-13
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		6e-13
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		6e-13
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		8e-13
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		9e-13
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		1e-11
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		6e-11
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		6e-11
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		1e-10
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		2e-10
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		8e-10
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		2e-09
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-08
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		6e-07
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		5e-06

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 196/234 (83%), Positives = 217/234 (92%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGK
Sbjct: 124 SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGK 183
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
           LLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGM
Sbjct: 184 LLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM 243
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
           F+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYM
Sbjct: 244 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYM 303
Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 304
           PNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 304 PNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 357

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score =  427 bits (1098), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 196/234 (83%), Positives = 217/234 (92%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGK
Sbjct: 118 SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGK 177
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
           LLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGM
Sbjct: 178 LLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM 237
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
           F+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYM
Sbjct: 238 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYM 297
Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 304
           PNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 298 PNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 162/235 (68%), Gaps = 7/235 (2%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SNVVSVAE  +M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG 
Sbjct: 119 SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGY 178
Query: 131 LLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
            +L+RL PFN   LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G
Sbjct: 179 RVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG 238
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
           + +K+ ++K KKG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR 
Sbjct: 239 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRD 298
Query: 250 MPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 298
           M N+     AMTPH SGTT+DAQ RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct: 299 MRNKYGAGNAMTPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGE 353

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 161/235 (68%), Gaps = 7/235 (2%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SNVVSVAE  +M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG 
Sbjct: 118 SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGY 177
Query: 131 LLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
            +L+RL PFN   LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G
Sbjct: 178 RVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG 237
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
           + +K+ ++K KKG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR 
Sbjct: 238 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRD 297
Query: 250 MPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 298
           M N+     AMTPH SGTT+DAQ RYA G  ++L+ +F G+ D+  Q+ I+  GE
Sbjct: 298 MRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGE 352

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score =  230 bits (586), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 144/229 (62%)
Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N +SVAE  +M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  
Sbjct: 147 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLA 206
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M 
Sbjct: 207 VLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 266
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
           + + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP
Sbjct: 267 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMP 326
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
              MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 327 YNGMTPHISGTTLTAQARYAAGTREILEXFFEGRPIRDEYLIVQGGALA 375

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 144/229 (62%)
Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N +SVAE  +M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  
Sbjct: 146 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLA 205
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M 
Sbjct: 206 VLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 265
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
           + + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP
Sbjct: 266 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMP 325
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
              MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 326 YNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 374

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 144/229 (62%)
Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N +SVAE  +M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  
Sbjct: 147 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLA 206
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M 
Sbjct: 207 VLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 266
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
           + + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP
Sbjct: 267 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMP 326
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
              MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 327 YNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 145/229 (63%)
Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N  SVAE  +M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  
Sbjct: 146 NSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLR 205
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           +L+ L PF+ +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M 
Sbjct: 206 VLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMI 265
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
           + + +   K+G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP
Sbjct: 266 NDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMP 325
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
           +  MTPH+SGT++ AQ RYAAG +++L+ YF+G     +  IV+ G LA
Sbjct: 326 HNGMTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 374

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 145/229 (63%)
Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N  SVAE  +M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  
Sbjct: 147 NSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLR 206
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           +L+ L PF+ +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M 
Sbjct: 207 VLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMI 266
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
           + + +   K+G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP
Sbjct: 267 NDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMP 326
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
           +  MTPH+SGT++ AQ RYAAG +++L+ YF+G     +  IV+ G LA
Sbjct: 327 HNGMTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 375

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 3/180 (1%)
Query: 109 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 168
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 134 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 191
Query: 169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 192 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 251
Query: 229 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
                DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct: 252 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 310

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 3/180 (1%)
Query: 109 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 168
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 133 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 190
Query: 169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250
Query: 229 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
                DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct: 251 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY----RAYDLEGKTVGTVGCGRIGK 130
           +VAE  +  I+ L+R        +  GEW      +    R   L GK VG +G G IGK
Sbjct: 100 AVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGK 159
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            + +RL PF   L Y  R +    +EKE  A++  D+D +L K DIV++  PLT  T  +
Sbjct: 160 AIARRLIPFGVKLYYWSRHR-KVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHI 217
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
            +++R+ K++ G  +VN  RGA++D +AV +A   G + GY+ DV+  +P  +   ++Y 
Sbjct: 218 INEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYE 276
Query: 251 PNQAMTPHVSGTTIDAQ 267
               +TPH +G  ++AQ
Sbjct: 277 WETVLTPHYAGLALEAQ 293

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 4/210 (1%)
Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           SVAE  +  +  + R       ++  G W  A       +LEGKT+G +G GRIG  + +
Sbjct: 102 SVAELAVGLMFSVARKIAFADRKMREGVW--AKKEAMGIELEGKTIGIIGFGRIGYQVAK 159
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
                  N+L +D    + +  KE   KF  DL+T+L + D+V ++ PL E T  + +++
Sbjct: 160 IANALGMNILLYDPYP-NEERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINEE 217
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA 254
           R+  MKK  +++N +RG ++DT A+V A   G IAG   DV+  +P PKDHP     N  
Sbjct: 218 RLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVV 277
Query: 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
           +TPH+  +T++AQ R    V + + +  KG
Sbjct: 278 LTPHIGASTVEAQERAGVEVAEKVVKILKG 307

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 118/205 (57%), Gaps = 8/205 (3%)
Query: 89  RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 143
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 144 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+  MKK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTA 234
Query: 204 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 263
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 264 IDAQLRYAAGVKDMLDRYFKGEDFP 288
             A+   A  V   L  + +GE  P
Sbjct: 294 FGAREGMAELVAKNLIAFKRGEIPP 318

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 5/216 (2%)
Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ 
Sbjct: 122 NSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGRE 179
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ 
Sbjct: 180 VATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLL 237
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
           + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       
Sbjct: 238 NDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHE 296
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287
           N    PH+  +T +AQ R    +        KG+  
Sbjct: 297 NVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSL 332

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 10/215 (4%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SN  SVAE  +  I++L+R   P      +G W    +  R  ++ GKT+G VG G IG 
Sbjct: 112 SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSR--EVRGKTLGIVGYGNIGS 169
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            +    +     + Y+D      +L+     K    LD +L   D+V ++ P ++ T  +
Sbjct: 170 QVGNLAESLGMTVRYYD---TSDKLQYGN-VKPAASLDELLKTSDVVSLHVPSSKSTSKL 225
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH----P 246
             + ++ KMKKG  ++NNARG+ +D +A+      GH+AG + DV+  +PA        P
Sbjct: 226 ITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTP 285
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
            + + N  +TPH+ G+T +AQ R    V   L  Y
Sbjct: 286 LQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEY 320

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 8/202 (3%)
Query: 89  RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 143
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 144 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+   KK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTA 234
Query: 204 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 263
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 264 IDAQLRYAAGVKDMLDRYFKGE 285
             A+   A  V   L  + +GE
Sbjct: 294 FGAREGXAELVAKNLIAFKRGE 315

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 123 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 182
           VG GRIG+ + +R   F   ++YH R        K     F   L+ +L + D+V ++TP
Sbjct: 150 VGMGRIGQAVAKRALAFGMRVVYHARTP------KPLPYPFL-SLEELLKEADVVSLHTP 202
Query: 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 242
           LT +T  + +++R+  MK+G +++N ARGA++DT+A+V+A   GH+ G   DV +P+P P
Sbjct: 203 LTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLP 261
Query: 243 KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
             HP   +PN  +TPH+       + R A    + L    +G + P
Sbjct: 262 PGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query: 72  NVVSVAEDELMRILIL--VRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRI 128
           +V+S A  E+  +L+L   R        V SG W   G        L G+ +G  G GRI
Sbjct: 125 DVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRI 184
Query: 129 GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 188
           G+ +  R + F   + YH+R ++   LE+  GA + + LD++L   DI ++  P   + +
Sbjct: 185 GRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELK 242
Query: 189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 248
           G  D DRIAK+ +G +++N +RG +++  A+++A  S H+     DV+  +PA  D  +R
Sbjct: 243 GFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPA-IDPRYR 301
Query: 249 YMPNQAMTPHVSGTT 263
            + N  +TPH+   T
Sbjct: 302 SLDNIFLTPHIGSAT 316

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 4/216 (1%)
Query: 74  VSVAEDELMRILIL--VRNFLPGHHQVISGEW-NVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           V+VA  E+  +L+L   R    G   + +  W     +      L+ KT+G  G G IG+
Sbjct: 100 VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 159
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            L +R + F+ ++ Y D  +     E    A F + LD++L       +N P T +TR  
Sbjct: 160 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 219
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
           F+K  I  + +G ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +
Sbjct: 220 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYD-L 278
Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 286
           PN  + PH+      A+   A    D++D  F G D
Sbjct: 279 PNTFLFPHIGSAATQAREDMAHQANDLIDALFGGAD 314

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 10/221 (4%)
Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA-YDLEGKTVGTVGCGRIGKLLL 133
           + AE  +  +L   R       +V +G W      +   Y L   TVG +G GRIG+ + 
Sbjct: 112 TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIA 171
Query: 134 QRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT---MLPKCDIVVVNTPLTEKTRG 189
           +RLKPF     LY  R     Q   E  A+F+ +  +   +  + D +VV   LT  T G
Sbjct: 172 RRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEG 226
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
           + +KD   KMK+  + +N +RG +++   +  A +SG IA    DV +P+P P +HP   
Sbjct: 227 LCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLT 286
Query: 250 MPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQ 290
           + N  + PH+   T   +   +    + L    +GE  P +
Sbjct: 287 LKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 327

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 10/194 (5%)
Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA-YDLEGKTVGTVGCGRIGKLLL 133
           + AE  +  +L   R       +V +G W      +   Y L   TVG +G GRIG+ + 
Sbjct: 110 TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIA 169
Query: 134 QRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT---MLPKCDIVVVNTPLTEKTRG 189
           +RLKPF     LY  R     Q   E  A+F+ +  +   +  + D +VV   LT  T G
Sbjct: 170 RRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEG 224
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
           + +KD   K K+  + +N +RG +++   +  A +SG IA    DV +P+P P +HP   
Sbjct: 225 LCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLT 284
Query: 250 MPNQAMTPHVSGTT 263
           + N  + PH+   T
Sbjct: 285 LKNCVILPHIGSAT 298

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SN  SVAE  +  +L+L+R     + +   G WN   +A  +++  GK +G +G G IG 
Sbjct: 107 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 164
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            L    +     + ++D     P L   T  +   DL  M    D+V ++ P    T+ M
Sbjct: 165 QLGILAESLGMYVYFYDIENKLP-LGNATQVQHLSDLLNM---SDVVSLHVPENPSTKNM 220
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
                I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P
Sbjct: 221 MGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP 280
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
                N  +TPH+ G+T +AQ      V   L +Y
Sbjct: 281 LAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SN  SVAE  +  +L+L+R     + +   G WN   +A  +++  GK +G +G G IG 
Sbjct: 107 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 164
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            L    +     + ++D     P L   T  +   DL  M    D+V ++ P    T+ M
Sbjct: 165 QLGILAESLGMYVYFYDIENKLP-LGNATQVQHLSDLLNM---SDVVSLHVPENPSTKNM 220
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
                I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P
Sbjct: 221 MGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP 280
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
                N  +TPH+ G+T +AQ      V   L +Y
Sbjct: 281 LAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SN  SVAE  +  +L+L+R     + +   G WN   +A  +++  GK +G +G G IG 
Sbjct: 106 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 163
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            L    +     + ++D     P L   T  +   DL  M    D+V ++ P    T+ M
Sbjct: 164 QLGILAESLGMYVYFYDIENKLP-LGNATQVQHLSDLLNM---SDVVSLHVPENPSTKNM 219
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
                I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P
Sbjct: 220 MGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP 279
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
                N  +TPH+ G+T +AQ      V   L +Y
Sbjct: 280 LCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 314

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 234 DVWNPQPAPKDHPWR-------------YMPNQAMTPHVSGTTIDA 266
           DV+  +    +  W                PN  +TPH +  T  A
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHA 305

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
           ++V   A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G 
Sbjct: 120 ASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 179
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
           GR+G+ +  R K F  N+L++D    D  +E+  G +    L  +L   D V ++  L E
Sbjct: 180 GRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTLQDLLFHSDCVTLHCGLNE 238
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
               + +   + +M++G  +VN ARG ++D +A+  A   G I G + DV   +P +   
Sbjct: 239 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 298
Query: 245 HPWRYMPNQAMTPHVS 260
            P +  PN   TPH +
Sbjct: 299 GPLKDAPNLICTPHAA 314

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
           ++V   A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G 
Sbjct: 120 ASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 179
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
           GR+G+ +  R K F  N+L++D    D  +E+  G +    L  +L   D V ++  L E
Sbjct: 180 GRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTLQDLLFHSDCVTLHCGLNE 238
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
               + +   + +M++G  +VN ARG ++D +A+  A   G I G + DV   +P +   
Sbjct: 239 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 298
Query: 245 HPWRYMPNQAMTPHVS 260
            P +  PN   TPH +
Sbjct: 299 GPLKDAPNLICTPHAA 314

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
           ++V   A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G 
Sbjct: 117 ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 176
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
           GR+G+ +  R K F  N+L++D    D  +E+  G +    L  +L   D V ++  L E
Sbjct: 177 GRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNE 235
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
               + +   + +M++G  +VN ARG ++D +A+  A   G I G + DV   +P +   
Sbjct: 236 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 295
Query: 245 HPWRYMPNQAMTPHVS 260
            P +  PN   TPH +
Sbjct: 296 GPLKDAPNLICTPHAA 311

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 234 DVWNPQPAPKDHPWR 248
           DV+  +    +  W 
Sbjct: 260 DVYEGEVGIFNEDWE 274

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
           ++V   A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G 
Sbjct: 120 ASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 179
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
            R+G+ +  R K F  N+L++D    D  +E+  G +    L  +L   D V ++  L E
Sbjct: 180 ERVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTLQDLLFHSDCVTLHCGLNE 238
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
               + +   + +M++G  +VN ARG ++D +A+  A   G I G + DV   +P +   
Sbjct: 239 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 298
Query: 245 HPWRYMPNQAMTPHVS 260
            P +  PN   TPH +
Sbjct: 299 GPLKDAPNLICTPHAA 314

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 98  VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 157
           V SG++      +    L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+
Sbjct: 126 VRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQ 185
Query: 158 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 217
             G + +     +    D +++  PL   T  + + + +A ++ G L+VN  RG+++D  
Sbjct: 186 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 218 AVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
           AV+ A   G + GY+ DV+  +       P   D      PN   TPH+ G+ + A
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 98  VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 157
           V SG++      +    L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+
Sbjct: 126 VRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQ 185
Query: 158 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 217
             G + +     +    D +++  PL   T  + + + +A ++ G L+VN  RG+++D  
Sbjct: 186 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 218 AVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
           AV+ A   G + GY+ DV+  +       P   D      PN   TPH+ G+ + A
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71  SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
           SN  SVAE  +  +L+L+R     + +   G WN   +A  +++  GK +G +G G IG 
Sbjct: 107 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 164
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
            L    +     + ++D   ++ +L      + +  L  +L   D+V ++ P    T+  
Sbjct: 165 QLGILAESLGXYVYFYD---IENKLPLGNATQVQH-LSDLLNXSDVVSLHVPENPSTKNX 220
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
                I+  K G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P
Sbjct: 221 XGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP 280
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
                N  +TPH+ G+T +AQ      V   L +Y
Sbjct: 281 LCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 2/178 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 167
           VA  A  + G+T+G +G GR G+ +  R K F  +++++D    D  +E+  G +    L
Sbjct: 143 VASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDG-IERSLGVQRVYTL 201
Query: 168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227
             +L + D V ++  L E    + +   I +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 202 QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGR 261
Query: 228 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
           I G + DV   +P +    P +  PN   TPH +  +  A L         + R   G
Sbjct: 262 IRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITG 319

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 235 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
           V+  +       P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 235 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
           V+  +       P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
           ++  + VG VG G IG++ ++ ++ F   ++ +D  K +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFK-NPELEKK--GYYVDSLDDLYKQ 199
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            D++ ++ P       M +   IA+MK GV+IVN +RG ++DT AV+    SG I G+  
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 234 D-------VWNPQPAPKDHPWRYM------PNQAMTPHVSGTTIDA 266
           D       V+N     K+ P + +      PN  +TPH +  T  A
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHA 305

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 98  VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 157
           V SG++      +    L+  TVG +G G IG     RL+ +   L YH    +D Q E+
Sbjct: 127 VRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQ 186
Query: 158 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 217
             G + +     +    D +++  PL   T  + + + +A ++ G L+VN  RG+++D  
Sbjct: 187 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 245
Query: 218 AVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
           AV+ A   G + GY+ DV+  +       P   D      PN   TPH+ G+ + A
Sbjct: 246 AVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 300

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 8/178 (4%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 167
           +A  +++  GK +G +G G IG  L    +     + ++D   ++ +L      + +  L
Sbjct: 136 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNATQVQH-L 191
Query: 168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227
             +L   D+V ++ P    T+       I+  K G L++N +RG ++D  A+ DA +S H
Sbjct: 192 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKH 251
Query: 228 IAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
           +AG + DV+  +PA    P   P     N  +TPH+ G+T +AQ      V   L +Y
Sbjct: 252 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 309

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 19/206 (9%)
Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           ++AE  + + ++L+R+      +     + V    + + ++   TVG VG GRIG++  Q
Sbjct: 105 AIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMF-SKEVRNCTVGVVGLGRIGRVAAQ 163
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
                   ++  D  ++    +  T    +  LD +L K DI+ ++ P  ++   +  +D
Sbjct: 164 IFHGMGATVIGEDVFEIKGIEDYCT----QVSLDEVLEKSDIITIHAPYIKENGAVVTRD 219
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA--PKDHPWRYM-- 250
            + KMK G ++VN ARG ++DT+AV++A  SG + GY  DV + + +   KD   + +  
Sbjct: 220 FLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLEN 279
Query: 251 ----------PNQAMTPHVSGTTIDA 266
                     P   +TPH+   T +A
Sbjct: 280 PLFEKLVDLYPRVLITPHLGSYTDEA 305

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 23/227 (10%)
Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           ++AE  L   L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++
Sbjct: 104 AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIK 162
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
             K F   ++ +D   M     K     F+   L+ +  + D++ ++ P  E+   + ++
Sbjct: 163 LFKGFGAKVIAYDPYPM-----KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINE 217
Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP----------APK 243
                MK G +++N AR  ++DTQA++    SG +AG   D +  +           + K
Sbjct: 218 AAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFK 277
Query: 244 DHPWRY---MPNQAMTPHVSGTTIDA--QLRYAAGVKDMLDRYFKGE 285
           D  W     MPN  ++PH++  T  A   + Y + ++ ++D   KGE
Sbjct: 278 DPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFS-LQHLVDFLTKGE 323

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK 162
           W    ++   Y+L   TVG +G G IG  + +        ++ +D V  +P+ E      
Sbjct: 137 WPSNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAYD-VAYNPEFEPFLTYT 192
Query: 163 FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 222
              D DT+L + DIV ++TPL   T  M  + ++ +MKK   ++N ARG ++DT A++ A
Sbjct: 193 ---DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKA 249
Query: 223 CSSGHIAGYSGDVWNPQPAPKDH--------PWRY-----MPNQAMTPH 258
              G IAG   D    + +   H        P  Y     MPN  +TPH
Sbjct: 250 LQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 10/215 (4%)
Query: 76  VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR 135
           VA+  +   L ++R    G   V  G W         +  +GK +G +G G+IG+ L  R
Sbjct: 130 VADLGIALXLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASR 189
Query: 136 LKPFNCNLLYHDRVKMD--PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
            + F  ++ Y +R  +     +  ++      D        D++ V    +  T+ + D 
Sbjct: 190 AEAFGXSVRYWNRSTLSGVDWIAHQSPVDLARD-------SDVLAVCVAASAATQNIVDA 242
Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253
             +  +    ++VN ARG ++D  A+++A  SG IAG   DV+  +PA +   +   PN 
Sbjct: 243 SLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNT 301
Query: 254 AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
            + PH    T++ +      V   L  +F GE  P
Sbjct: 302 VLXPHQGSATVETRXAXGKLVLANLAAHFAGEKAP 336

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 9/211 (4%)
Query: 76  VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR 135
           VA+  +  IL ++R        V  G W   G         GK VG +G GRIG  + +R
Sbjct: 124 VADLAIGLILAVLRRICECDKYVRRGAWKF-GDFKLTTKFSGKRVGIIGLGRIGLAVAER 182
Query: 136 LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 195
            + F+C + Y  R K     +  T   +   +  +    DI+VV  PLT +T  + +++ 
Sbjct: 183 AEAFDCPISYFSRSK-----KPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREV 237
Query: 196 IAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA 254
           I  +  KGVLI N  RG  +D   +V A   G + G   DV+  +P   +  +  + N  
Sbjct: 238 IDALGPKGVLI-NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFG-LENVV 295
Query: 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           + PHV   T++ +   A  V   L+ +F G+
Sbjct: 296 LLPHVGSGTVETRKVMADLVVGNLEAHFSGK 326

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 166
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 167 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 227 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
            +     DV   +P         M +  +T H+ G  I+    +       +DR+ 
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 166
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 167 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 227 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
            +     DV   +P         M +  +T H+ G  I+    +       +DR+ 
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 166
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 167 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 227 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
            +     DV   +P         M +  +T H+ G  I+    +       +DR+ 
Sbjct: 274 KLLSAGLDVHEFEPNVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           SVAE     IL LV+       +V    ++       A +L   T+G +G GRIG  +  
Sbjct: 100 SVAEHTFAXILTLVKRLKRIEDRVKKLNFS-QDSEILARELNRLTLGVIGTGRIGSRVAX 158
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
               F   +L +D VK +    KE G  +   LD +L + D++ ++ P T++T    +++
Sbjct: 159 YGLAFGXKVLCYDVVKREDL--KEKGCVYT-SLDELLKESDVISLHVPYTKETHHXINEE 215
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 239
           RI+  K GV ++N ARG ++DT A+  A   G  +G   DV+  +
Sbjct: 216 RISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 1/145 (0%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           L+G+T+G  G G+IG+L+    + F  N+L   R +   +  +  G    E  D +  + 
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQS 216
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           D++ V+  L ++TR +     + +MK   L VN +R  +++   +V A + G     + D
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHV 259
           V+  +P  + H    M N   TPH+
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHI 301

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
           +L GKT+G VG GRIG  +          +L +D + +  + EK         L+ +L  
Sbjct: 139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV--SLEELLKN 196
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            D++ ++  +++  + + D  +   MK  V+IVN +R   ++ +A++D    G +  Y+ 
Sbjct: 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYAT 256
Query: 234 DVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTTIDAQLRYA 271
           DV+  +P  ++     + ++   +T H+   T +AQ R A
Sbjct: 257 DVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVA 296

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTML 171
           Y  E  +VG  G G +G  + + L+ +   L    R +   P +E   G    E+L   L
Sbjct: 135 YTREEFSVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFL 191
Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
            +  +++   P T +T G+ + + + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251
Query: 232 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQ 267
             DV++ +P P++ P WR+ P  A TPH++  T  A+
Sbjct: 252 XLDVFSQEPLPQESPLWRH-PRVAXTPHIAAVTRPAE 287

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           + G  +G VG G +GK L + L  F   +   D       LE E G +    L+ +L K 
Sbjct: 174 IAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLE-ENGVE-PASLEDVLTKS 231
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           D + V   +T + +     +  +  ++G   +  +R  ++D  A+  A SSGHI   S D
Sbjct: 232 DFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-D 290
Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVSGT 262
           V+  +P P DHP R +     + H +G 
Sbjct: 291 VYPEEPLPLDHPVRSLKGFIRSAHRAGA 318

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT 169
           L+G+T+  +G G IG+ +    K F   +L   R            A F++      L+ 
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSR-------SGRERAGFDQVYQLPALNK 190
Query: 170 MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229
           ML + D++V   P T +T  +F   R    K G ++ N  RG  ++   ++ A  +G + 
Sbjct: 191 MLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250
Query: 230 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTI 264
               DV+  +P P D P    PN  +TPH S  + 
Sbjct: 251 MAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSF 285

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 153 PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TRGMFDKDRIAKMKKGVLIVNN 208
           P+  +E   +F   L+ +L + D++ ++TPL       TR + D+ R+A ++ G  +VN 
Sbjct: 148 PRQAREPDGEFVS-LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNA 206
Query: 209 ARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL 268
           +RGA++D QA+      G     + DVW  +  P+  P         TPH++G +++ +L
Sbjct: 207 SRGAVVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARCLIATPHIAGYSLEGKL 264
Query: 269 RYAAGV 274
           R  A +
Sbjct: 265 RGTAQI 270

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172
           + L  +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++ 
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCD----PPRAARGDEGDFRT-LDELVQ 169
Query: 173 KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228
           + D++  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G  
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229
Query: 229 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269
                DVW  +P         +     T H++G T++ + R
Sbjct: 230 LSVVLDVWEGEPDLNVALLEAV--DIGTSHIAGYTLEGKAR 268

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
           + +V   PLT  T  +F  +   + K+  +++N  RG  +DT A++ A     ++  + D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVSG 261
           V  P+P P DHP     +  +TPH+SG
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHISG 279

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 12/188 (6%)
Query: 74  VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLL 133
           +SVAE     +L   +N L  +    +G +  +        L GK +G +G G IG+ + 
Sbjct: 83  ISVAEHAFALLLAHAKNILENNELXKAGIFRQSPTTL----LYGKALGILGYGGIGRRVA 138
Query: 134 QRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
              K F   ++ + R  +D  ++        E    +  + D V++  PLT+KTRG  + 
Sbjct: 139 HLAKAFGXRVIAYTRSSVDQNVDV-----ISESPADLFRQSDFVLIAIPLTDKTRGXVNS 193
Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253
             +A  +K + IVN AR  ++     +          Y  DVW  +P   +   R   N 
Sbjct: 194 RLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR---NA 250
Query: 254 AMTPHVSG 261
            ++PHV+G
Sbjct: 251 ILSPHVAG 258

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
           ++G+ V  +G G IG  + + L      +    R        KE   +F   L+  L + 
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP------KEGPWRFTNSLEEALREA 175
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
              V   PL + TRG+     +A   +  + VN  R  ++D   V+          ++ D
Sbjct: 176 RAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 235
Query: 235 V-WNPQPAPKDHPWRYMPNQAMTPHVSG 261
           V W      KD  +  +PN   TP V+G
Sbjct: 236 VWWGRNDFAKDAEFFSLPNVVATPWVAG 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-128
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	1e-123
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-115
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-64
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	5e-64
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-63
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	4e-63
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	5e-62
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-60
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	5e-60
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	8e-60
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-59
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-59
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	1e-58
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-58
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	3e-58
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	3e-56
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	3e-56
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-55
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	3e-55
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-55
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-55
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	4e-55
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	1e-54
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-54
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	9e-51
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	8e-50
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	2e-49
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	4e-49
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	8e-49
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	2e-46
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	3e-44
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	7e-04

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  369 bits (949), Expect = e-128
 Identities = 210/248 (84%), Positives = 231/248 (93%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AAAAAGLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLE
Sbjct: 104 AAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLE 163

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+GTVG GRIGKLLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD+
Sbjct: 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 223

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           +V+N PLTEKTRGMF+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW
Sbjct: 224 IVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVW 283

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
           +PQPAPKDHPWRYMPNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK 
Sbjct: 284 DPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKD 343

Query: 297 GELAPQYR 304
           GELAPQYR
Sbjct: 344 GELAPQYR 351

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  356 bits (916), Expect = e-123
 Identities = 118/246 (47%), Positives = 153/246 (62%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           +A    +TVAEVT  N +SVAE  +M IL LVRN+LP H     G WN+A     AYDLE
Sbjct: 131 SAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLE 190

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
              VGTV  GRIG  +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+
Sbjct: 191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDV 250

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V +N PL  +T  M + + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW
Sbjct: 251 VTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVW 310

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
            PQPAPKDHPWR MP   MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ 
Sbjct: 311 FPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQG 370

Query: 297 GELAPQ 302
           G LA  
Sbjct: 371 GALAGT 376

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  335 bits (860), Expect = e-115
 Identities = 124/255 (48%), Positives = 168/255 (65%), Gaps = 9/255 (3%)

Query: 57  AAAAAGL--TVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYD 114
                G   +V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+I+ +W VA +A  AYD
Sbjct: 102 YINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYD 161

Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
           +EGKT+ T+G GRIG  +L+RL PFN   LLY+D   +    E++ GA+  E+++ ++ +
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQ 221

Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            DIV VN PL   T+G+ +K+ ++K KKG  +VN ARGAI   + V  A  SG + GY G
Sbjct: 222 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGG 281

Query: 234 DVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DF 287
           DVW PQPAPKDHPWR M N      AMTPH SGTT+DAQ RYA G  ++L+ +F G+ D+
Sbjct: 282 DVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDY 341

Query: 288 PVQNYIVKAGELAPQ 302
             Q+ I+  GE   +
Sbjct: 342 RPQDIILLNGEYGTK 356

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  203 bits (519), Expect = 3e-64
 Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 14/239 (5%)

Query: 56  LAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDL 115
             +    +TVA   GSN  +VAE  L  +L   +  +    ++  G++           +
Sbjct: 66  WESIPPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD---VEIPLI 122

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
           +G+ V  +G G IG  + + L      +    R        KE   +F   L+  L +  
Sbjct: 123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT------PKEGPWRFTNSLEEALREAR 176

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
             V   PL + TRG+     +A M +  + VN  R  ++D   V+          ++ DV
Sbjct: 177 AAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV 236

Query: 236 -WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAG--VKDMLDRYFKGEDFPVQN 291
            W      KD  +  +PN   TP V+G   + ++           L  Y  G     +N
Sbjct: 237 WWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGG--RPRN 293

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  203 bits (520), Expect = 5e-64
 Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 8/239 (3%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           A  A G+ +  V     V  AE  +   + L R+       V SG++      +    L+
Sbjct: 85  ACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLD 144

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
             TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G +       +    D 
Sbjct: 145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDF 203

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV- 235
           +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ DV 
Sbjct: 204 ILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVF 263

Query: 236 ------WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
                    +P   D      PN   TPH+       +L         + +   GE   
Sbjct: 264 EMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  200 bits (511), Expect = 3e-63
 Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
                 +  +   G+  +SVAE     +L   +N L  +  + +G +           L 
Sbjct: 67  GIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFR----QSPTTLLY 121

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GK +G +G G IG+ +    K F   ++ + R      +++      E     +  + D 
Sbjct: 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRS----SVDQNVDVISE-SPADLFRQSDF 176

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V++  PLT+KTRGM +   +A  +K + IVN AR  ++    ++          Y  DVW
Sbjct: 177 VLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVW 236

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGV-KDMLDRYFKGEDFPVQN 291
             +P   +     + N  ++PHV+G      +  A  +  + +  +F+GE     +
Sbjct: 237 WNEPEITETN---LRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEGHHHHH 289

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  202 bits (515), Expect = 4e-63
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 7/235 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN-----VAGVAYR 111
           +A   G+ V  V  ++V   A+  L  IL L R     H  +  G        +  VA  
Sbjct: 103 SAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASG 162

Query: 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 171
           A  + G+T+G +G GR+G+ +  R K F  N+L++D   +   +E+  G +    L  +L
Sbjct: 163 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP-YLSDGVERALGLQRVSTLQDLL 221

Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
              D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G I G 
Sbjct: 222 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGA 281

Query: 232 SGDVWNPQP-APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           + DV   +P +    P +  PN   TPH +  +  A +         + R   G 
Sbjct: 282 ALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGR 336

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  198 bits (505), Expect = 5e-62
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 4/228 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V     ++  SVAE  +  +  + R       ++  G W          +LE
Sbjct: 84  AAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKK--EAMGIELE 141

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G +G GRIG  + +       N+L +D    + +  KE   KF  DL+T+L + D+
Sbjct: 142 GKTIGIIGFGRIGYQVAKIANALGMNILLYDPY-PNEERAKEVNGKFV-DLETLLKESDV 199

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ PL E T  + +++R+  MKK  +++N +RG ++DT A+V A   G IAG   DV+
Sbjct: 200 VTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVF 259

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
             +P PKDHP     N  +TPH+  +T++AQ R    V + + +  KG
Sbjct: 260 EEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  195 bits (497), Expect = 1e-60
 Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 7/236 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN----VAGVAYRA 112
            A   G+ V +V+G    +VAE  +  I+ L+R        +  GEW     +     R 
Sbjct: 82  EATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRI 141

Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172
             L GK VG +G G IGK + +RL PF   L Y  R      +EKE  A++  D+D +L 
Sbjct: 142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSR-HRKVNVEKELKARYM-DIDELLE 199

Query: 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
           K DIV++  PLT  T  + +++R+ K++ G  +VN  RGA++D +AV +A   G + GY+
Sbjct: 200 KSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYA 258

Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
            DV+  +P  +   ++Y     +TPH +G  ++AQ        + L +  +GE   
Sbjct: 259 TDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPE 314

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  194 bits (494), Expect = 5e-60
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 7/239 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN-----VAGVAYR 111
           A    G+  A   G+   + ++  L  IL + R          +G+          +   
Sbjct: 98  ALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKS 157

Query: 112 AYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 170
           A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + L+ +
Sbjct: 158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEEL 217

Query: 171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230
             + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG +  
Sbjct: 218 ARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLS 277

Query: 231 YSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPV 289
              DV   +P         M +  +T H+ G  I+    +       +DR+       +
Sbjct: 278 AGLDVHEFEPQV-SKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLL 335

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  192 bits (491), Expect = 8e-60
 Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 2/233 (0%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN-VAGVAYRAYDL 115
           A  A G+ V        V+ AE  ++ +L   R    G   + +  W     +      L
Sbjct: 85  ACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKL 144

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
           + KT+G  G G IG+ L +R + F+ ++ Y D  +     E    A F + LD++L    
Sbjct: 145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQ 204

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
              +N P T +TR  F+K  I  + +G ++VN ARG ++D + VV A  +G +A    DV
Sbjct: 205 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 264

Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
           +  +P   +  +  +PN  + PH+      A+   A    D++D  F G D  
Sbjct: 265 FAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMS 316

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  192 bits (491), Expect = 1e-59
 Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 8/237 (3%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA---- 112
            A   G+ V         + A+     +L   R+ + G   V SGEW   GVA+      
Sbjct: 85  EATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFL 144

Query: 113 -YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 171
            YD+ GKT+G +G GRIG+ + +R K FN  +LY+ R     ++E+E  A+F+  L+ +L
Sbjct: 145 GYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSR-TRKEEVERELNAEFK-PLEDLL 202

Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
            + D VV+  PLT +T  + +++R+  MKK  +++N ARG ++DT A+V A   G IAG 
Sbjct: 203 RESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGA 262

Query: 232 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
             DV+  +P   +     + N  +TPH+   +  A+   A  V   L  + +GE  P
Sbjct: 263 GLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPP 318

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  192 bits (489), Expect = 2e-59
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 5/235 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           A  AAG+ VA  +G +  +++E  L  +L +VR +                +      L 
Sbjct: 79  ALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTS--TLT 136

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           G+ +   G G+IG+ L  +      +++  +     P         F       L   + 
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNT-TGHPADHFHETVAFT-ATADALATANF 194

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           +V   PLT  T  +F  +   + K+  +++N  RG  +DT A++ A     ++  + DV 
Sbjct: 195 IVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVT 254

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQN 291
            P+P P DHP     +  +TPH+SG     +            ++ K     V+N
Sbjct: 255 EPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGT-LVRN 308

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  190 bits (484), Expect = 1e-58
 Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 7/235 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V      N +S AE     I+ L R        +  G+W      +   +L 
Sbjct: 107 AATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELN 164

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G +G GRIG+ +  R++ F    + +D + + P++    G +    L+ + P CD 
Sbjct: 165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQQL-PLEEIWPLCDF 222

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + V+TPL   T G+ + +  A+ KKGV +VN ARG I+D  A++ A  SG  AG + DV+
Sbjct: 223 ITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVF 282

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQN 291
             +P P+D       N    PH+  +T +AQ R    +        KG+   +  
Sbjct: 283 TEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGK--SLTG 334

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  188 bits (480), Expect = 2e-58
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 8/231 (3%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
            A    + V    G++  S  E  +  ++   R          SG +          +L 
Sbjct: 86  EAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK----KIEGLELA 141

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G VG GRIG  +          +L +D +    +  ++  AK    L+ +L   D+
Sbjct: 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDIL-DIREKAEKINAKAV-SLEELLKNSDV 199

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++  +++  + + D  +   MK  V+IVN +R   ++ +A++D    G +  Y+ DV+
Sbjct: 200 ISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVF 259

Query: 237 NPQPAPKDH--PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
             +P  ++            +T H+   T +AQ R A      L    K  
Sbjct: 260 WNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKEL 310

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  189 bits (483), Expect = 3e-58
 Identities = 59/275 (21%), Positives = 111/275 (40%), Gaps = 11/275 (4%)

Query: 20  LRSSSRFSRHYASSGSK-KIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAE 78
           +R  +R +R       K KI+    + +  A  + +  A    G+ V E    + V+ AE
Sbjct: 55  IRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLE-GKGSPVAPAE 113

Query: 79  DELMRILILVRNFLPGHHQVISGEWNVAGVAYRAY--------DLEGKTVGTVGCGRIGK 130
                ++   R        +  G W  +G+              L+G+T+G  G G+IG+
Sbjct: 114 LTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQ 173

Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
           L+    + F  N+L   R +   +  +  G    E  D +  + D++ V+  L ++TR +
Sbjct: 174 LVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSI 232

Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
                + +MK   L VN +R  +++   +V A + G     + DV+  +P  + H    M
Sbjct: 233 ITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRM 292

Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
            N   TPH+     ++   Y       +    +G 
Sbjct: 293 ENCICTPHIGYVERESYEMYFGIAFQNILDILQGN 327

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  183 bits (468), Expect = 3e-56
 Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 21/254 (8%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
            A   G  +  V   +  ++AE   ++   ++R       +V   +   A       ++ 
Sbjct: 88  KAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVR 145

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
            + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+ G   +  LD +  + D+
Sbjct: 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK-GYYVD-SLDDLYKQADV 202

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ DV+
Sbjct: 203 ISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY 262

Query: 237 -------------NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFK 283
                           P  +       PN  +TP  +  T  A         D      +
Sbjct: 263 EGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVE 322

Query: 284 GEDFPVQNYIVKAG 297
           G++       VK G
Sbjct: 323 GKEAE---TPVKVG 333

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  181 bits (463), Expect = 1e-55
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 2/233 (0%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDL 115
                G+ V         + AE  +  +L   R       +V +G W     +    Y L
Sbjct: 94  EIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGL 153

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
              TVG +G GRIG+ + +RLKPF      +   +  P+   E  A+F      +  + D
Sbjct: 154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSD 212

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
            +VV   LT  T G+ +KD   KMK+  + +N +RG +++   +  A +SG IA    DV
Sbjct: 213 FIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV 272

Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
            +P+P P +HP   + N  + PH+   T   +   +    + L    +GE  P
Sbjct: 273 TSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMP 325

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  180 bits (460), Expect = 3e-55
 Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 9/233 (3%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDL 115
           AA   G+ V    G    + A+  L  +L + R  + G      G W           DL
Sbjct: 83  AARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDL 142

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
           +G T+G VG GRIG+ + +R   F   ++YH R        K     F   L+ +L + D
Sbjct: 143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHART------PKPLPYPFL-SLEELLKEAD 195

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
           +V ++TPLT +T  + +++R+  MK+G +++N ARGA++DT+A+V+A   GH+ G   DV
Sbjct: 196 VVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDV 254

Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
            +P+P P  HP   +PN  +TPH+       + R A    + L    +G + P
Sbjct: 255 TDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  186 bits (474), Expect = 3e-55
 Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 5/238 (2%)

Query: 51  MNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY 110
            N +  AA A G+ V     SN+ S AE  L  +L   R        +    W  +  ++
Sbjct: 78  DNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SF 135

Query: 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 170
              ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD +
Sbjct: 136 SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY-VSPARAAQLGIELL-SLDDL 193

Query: 171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230
           L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+  
Sbjct: 194 LARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRA 253

Query: 231 YSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
              DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct: 254 AGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 310

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  183 bits (466), Expect = 3e-55
 Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 10/233 (4%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AAA  G+ V     SN  SVAE  +  +L+L+R     + +   G  N   +A  +++  
Sbjct: 87  AAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN--KLAAGSFEAR 144

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GK +G +G G IG  L    +     + ++D      +L      + +  L  +L   D+
Sbjct: 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE---NKLPLGNATQVQ-HLSDLLNMSDV 200

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+
Sbjct: 201 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 260

Query: 237 NPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
             +PA    P   P     N  +TPH+ G+T +AQ      V   L +Y    
Sbjct: 261 PTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 313

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  180 bits (460), Expect = 4e-55
 Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 18/245 (7%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           A    G+ ++ V   +  ++AE  L   L L+RN      Q+ +G++  AG  +   +L 
Sbjct: 86  AMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELG 144

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
            +TVG +G G IG++ ++  K F   ++ +D     P         +   L+ +  + D+
Sbjct: 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY---PMKGDHPDFDYV-SLEDLFKQSDV 200

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + ++ P  E+   + ++     MK G +++N AR  ++DTQA++    SG +AG   D +
Sbjct: 201 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 260

Query: 237 -------------NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFK 283
                             P       MPN  ++PH++  T  A           L  +  
Sbjct: 261 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT 320

Query: 284 GEDFP 288
             +  
Sbjct: 321 KGETS 325

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  182 bits (463), Expect = 1e-54
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 10/233 (4%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
           AA   G+ V     SN  SVAE  +  I++L+R   P      +G W     A  + ++ 
Sbjct: 98  AARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE--KTAIGSREVR 155

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GKT+G VG G IG  +    +     + Y+D              K    LD +L   D+
Sbjct: 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYG----NVKPAASLDELLKTSDV 211

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           V ++ P ++ T  +  + ++ KMKKG  ++NNARG+ +D +A+      GH+AG + DV+
Sbjct: 212 VSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVF 271

Query: 237 NPQPAPK----DHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
             +PA        P + + N  +TPH+ G+T +AQ R    V   L  Y    
Sbjct: 272 PVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVG 324

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  178 bits (455), Expect = 2e-54
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 19/246 (7%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
            A   G  +A V   +  ++AE  + + ++L+R+      +     + V      + ++ 
Sbjct: 87  YAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVR 145

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
             TVG VG GRIG++  Q        ++  D          E        LD +L K DI
Sbjct: 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVF---EIKGIEDYCTQV-SLDEVLEKSDI 201

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV- 235
           + ++ P  ++   +  +D + KMK G ++VN ARG ++DT+AV++A  SG + GY  DV 
Sbjct: 202 ITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVL 261

Query: 236 ----------WNPQPAPKDHPWRYM---PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
                        Q        + +   P   +TPH+   T +A           L    
Sbjct: 262 DGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLA 321

Query: 283 KGEDFP 288
           +  D P
Sbjct: 322 ETGDCP 327

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  170 bits (432), Expect = 9e-51
 Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 4/230 (1%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDL 115
           AA + G+ V         + AE  ++ +L   R        V SG W            L
Sbjct: 112 AARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGL 171

Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
            G+ +G  G GRIG+ +  R + F   + YH+R ++      E GA + + LD++L   D
Sbjct: 172 TGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSH--ALEEGAIYHDTLDSLLGASD 229

Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
           I ++  P   + +G  D DRIAK+ +G +++N +RG +++  A+++A  S H+     DV
Sbjct: 230 IFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDV 289

Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
           +  +P   D  +R + N  +TPH+   T + +      +   ++   + +
Sbjct: 290 FANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSD 338

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  168 bits (428), Expect = 8e-50
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 31/233 (13%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
               AG+  +   G N ++V E     +L+L                         + L 
Sbjct: 79  WLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER--------------------DGFSLR 118

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
            +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++ + D+
Sbjct: 119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDP----PRAARGDEGDFR-TLDELVQEADV 173

Query: 177 VVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
           +  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G      
Sbjct: 174 LTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVV 233

Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
            DVW  +P   +       +   T H++G T++ + R    V +    +   E
Sbjct: 234 LDVWEGEP-DLNVALLEAVDIG-TSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  166 bits (423), Expect = 2e-49
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 6/232 (2%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
            A    + V    G     VA+  +  +L ++R    G   V  G W         +  +
Sbjct: 111 RARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPK 170

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GK +G +G G+IG+ L  R + F  ++ Y +R  +             +    +    D+
Sbjct: 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDV 225

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           + V    +  T+ + D   +  +    ++VN ARG ++D  A+++A  SG IAG   DV+
Sbjct: 226 LAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVF 285

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
             +PA     +   PN  + PH    T++ ++     V   L  +F GE  P
Sbjct: 286 VNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAP 336

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  166 bits (423), Expect = 4e-49
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 31/233 (13%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
             A AG+  +   G N   V +                   V+     +A    R  DL 
Sbjct: 76  YFAEAGIAWSSAPGCNARGVVD------------------YVLGCLLAMA--EVRGADLA 115

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
            +T G VG G++G  L++ L+     +L  D     P+  +E   +F   L+ +L + D+
Sbjct: 116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP----PRQAREPDGEFV-SLERLLAEADV 170

Query: 177 VVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
           + ++TPL       TR + D+ R+A ++ G  +VN +RGA++D QA+      G     +
Sbjct: 171 ISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVA 230

Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
            DVW  +P     P         TPH++G +++ +LR  A +      +    
Sbjct: 231 LDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIA 281

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  164 bits (418), Expect = 8e-49
 Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 7/232 (3%)

Query: 57  AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
                G+ V          VA+  +  IL ++R        V  G W   G         
Sbjct: 105 KCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FGDFKLTTKFS 163

Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
           GK VG +G GRIG  + +R + F+C + Y  R K        T   +   +  +    DI
Sbjct: 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP-----NTNYTYYGSVVELASNSDI 218

Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
           +VV  PLT +T  + +++ I  +    +++N  RG  +D   +V A   G + G   DV+
Sbjct: 219 LVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVF 278

Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
             +P         + N  + PHV   T++ +   A  V   L+ +F G+   
Sbjct: 279 EREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLL 329

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  157 bits (400), Expect = 2e-46
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 10/235 (4%)

Query: 55  FLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYD 114
             A       +  V G     ++E     +L L+R       Q     W     ++    
Sbjct: 82  LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQ----SHPYQG 137

Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPK 173
           L+G+T+  +G G IG+ +    K F   +L   R  +     ++         L+ ML +
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQ---LPALNKMLAQ 194

Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
            D++V   P T +T  +F   R    K G ++ N  RG  ++   ++ A  +G +     
Sbjct: 195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVL 254

Query: 234 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
           DV+  +P P D P    PN  +TPH S  +    +  A        R+  G+   
Sbjct: 255 DVFEQEPLPADSPLWGQPNLIITPHNSAYSFPDDV--AQIFVRNYIRFIDGQPLD 307

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  152 bits (386), Expect = 3e-44
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 10/216 (4%)

Query: 74  VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLL 133
           + + E  + ++L   R F           W         Y  E  +VG +G G +G  + 
Sbjct: 100 LQMQEYAVSQVLHWFRRFDDYQALKNQALWK----PLPEYTREEFSVGIMGAGVLGAKVA 155

Query: 134 QRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192
           + L+ +   L    R  K  P +E   G    E+L   L +  +++   P T +T G+ +
Sbjct: 156 ESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFLNQTRVLINLLPNTAQTVGIIN 212

Query: 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 252
            + + ++  G  ++N ARG  +    ++ A  SG + G   DV++ +P P++ P    P 
Sbjct: 213 SELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPR 272

Query: 253 QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
            AMTPH++  T  A+      +   + +  KGE   
Sbjct: 273 VAMTPHIAAVTRPAEA--IDYISRTITQLEKGEPVT 306

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 12/156 (7%)

Query: 86  ILVRNFLPGHHQVISGEWNVAGVAYRAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNL 143
           ++ R+ +  ++ + + E  +  +A +  D  + G  V  +G GR+G  + ++       +
Sbjct: 123 LMERDDIAIYNSIPTAEGTIM-MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKV 181

Query: 144 LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 201
               R         E G +          L   D+ +   P       +   + +A+M  
Sbjct: 182 KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-----VVTANVLAEMPS 236

Query: 202 GVLIVNNARG--AIMDTQAVVDACSSGHIAGYSGDV 235
              +++ A          A      +  + G  G V
Sbjct: 237 HTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIV 272

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 27/128 (21%)

Query: 90  NFLPGHH---QVISGEWNVAGVAYRAYD-LEGK--TVGTVGCGRIGKL-LLQRLKPFNCN 142
           + + GHH           +  + +  +  LE K     T        L  LQ+LK     
Sbjct: 475 SHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK----- 528

Query: 143 LLYHDRV-KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 201
             Y   +   DP+ E+         +   LPK +  ++ +  T       D  RIA M +
Sbjct: 529 -FYKPYICDNDPKYER-----LVNAILDFLPKIEENLICSKYT-------DLLRIALMAE 575

Query: 202 GVLIVNNA 209
              I   A
Sbjct: 576 DEAIFEEA 583

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 18/75 (24%)

Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 169
            G  G G  G +L+         + +H   +     DP  +       E G      L  
Sbjct: 5   FGICGLGFAGSVLMAPA------MRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAE 58

Query: 170 ML--PKCDIVVVNTP 182
           M+   + D V + +P
Sbjct: 59  MMQHVQMDAVYIASP 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.92
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.9
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.89
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.86
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.79
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.75
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.7
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.65
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.64
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.59
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.55
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.55
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.5
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.47
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.46
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.46
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.45
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.45
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.44
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.43
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.42
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.41
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.4
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.39
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.36
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.36
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.35
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.34
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.29
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.26
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.26
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.26
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.24
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.24
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.23
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.23
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.22
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.22
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.22
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.21
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.2
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.2
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.19
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.17
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.16
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.15
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.14
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.11
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.08
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.06
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.06
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.63
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.05
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.04
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.02
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.0
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.98
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.98
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.97
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.94
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.93
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.92
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.92
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.92
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.9
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.88
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.87
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.87
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.87
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.84
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.84
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.79
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.79
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.76
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.74
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.73
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.71
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.7
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.7
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.69
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.69
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.69
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.68
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.67
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.63
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.62
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.62
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.62
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.61
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.59
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.58
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.56
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.55
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.54
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.53
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.51
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.5
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.5
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.48
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.48
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.47
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.46
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.45
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.44
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.43
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.43
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.41
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.4
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.39
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.39
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.39
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.39
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.38
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.36
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.34
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.34
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.32
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.32
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.31
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.31
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.3
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.3
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.29
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.26
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.21
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.2
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.17
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.15
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.14
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.14
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.12
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.1
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.1
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.1
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.07
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.05
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.04
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.02
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.02
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.01
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.01
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.96
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.94
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.94
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.93
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.93
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.92
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.91
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.88
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.88
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.88
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.88
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.88
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.87
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.86
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.86
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.86
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.84
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.84
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.83
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.83
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.81
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.8
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.8
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.78
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.77
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.77
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.75
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.75
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.74
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.74
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.72
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.7
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.69
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.69
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.68
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.68
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.67
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.66
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.66
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.64
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.64
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.63
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.63
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.63
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.63
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.62
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.6
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.59
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.58
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.58
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.57
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.57
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.57
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.57
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.54
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.53
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.53
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.53
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.51
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.5
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.48
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.46
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	97.45
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.45
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.45
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.44
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.44
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.43
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.43
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.42
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	97.42
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.42
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.42
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.42
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.41
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.41
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.4
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.4
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.4
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.39
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	97.38
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.37
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.36
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.35
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.35
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	97.34
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.33
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.32
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.32
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	97.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.31
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.31
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.31
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.31
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.31
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.3
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.28
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.28
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.27
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	97.25
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.24
4had_A	350	Probable oxidoreductase protein; structural genomi	97.24
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.22
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.22
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.22
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.22
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	97.21
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.21
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.21
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	97.2
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.19
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.19
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.18
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.16
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.16
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.16
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.14
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.13
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.13
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.13
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.12
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.12
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.11
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.1
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.1
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.1
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.1
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	97.1
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.09
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.08
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.08
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.08
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.06
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.05
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	97.05
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.05
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.04
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.03
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	97.02
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.02
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.97
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.97
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.95
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.95
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.94
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.94
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.93
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.92
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.91
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.9
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.89
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.89
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.88
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.88
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.88
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.87
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.86
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.86
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.86
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.85
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.85
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.85
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	96.84
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.84
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.84
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.83
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.81
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.81
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.8
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.79
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.79
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.78
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.77
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.77
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.77
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.77
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.77
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.76
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.76
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.75
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.75
1lnq_A	336	MTHK channels, potassium channel related protein;	96.75
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.74
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.71
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.71
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	96.71
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.7
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.7
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.69
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.69
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.66
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.65
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.65
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.64
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.63
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.63
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.62
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.62
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.62
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	96.62
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.62
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.61
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.57
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.57
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.56
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.56
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.53
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.52
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.52
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.51
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.5
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.48
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	96.46
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.46
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.45
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.45
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.44
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.44
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.44
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.43
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.42
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.42
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.4
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.4
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.39
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.37
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.36
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.36
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.35
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.35
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.35
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.35
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.34
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.34
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.33
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.32
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.31
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.3
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.29
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.28
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.27
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.27
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.26
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.25
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.24
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.23
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.21
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.21
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.21
3on5_A	362	BH1974 protein; structural genomics, joint center	96.2
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.19
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.19
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.18
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.18
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.17
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.14
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.12
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.09
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.09
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.09
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.09
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.08
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.08
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.08
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.08
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.06
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.04
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	96.03
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.02
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.01
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.97
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.95
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.94
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.94
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.91
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.89
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.87
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.83
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.83
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.81
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.8
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.79
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.79
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.79
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.77
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.7
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.68
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.67
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.66
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.66
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	95.64
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.62
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	95.6
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.59
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.58
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.57
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.56
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	95.55
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.52
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.51
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.5
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.48
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.43
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.42
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.4
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.39
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.39
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.36
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.35
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.33
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.3
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.29
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.28
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.28
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.28
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.26
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.23

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=4.6e-66  Score=486.87  Aligned_cols=277  Identities=77%  Similarity=1.219  Sum_probs=261.4

Q ss_pred             hchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCC
Q 021995           24 SRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGE  102 (304)
Q Consensus        24 ~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~  102 (304)
                      ..+++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.
T Consensus        74 ~~~~~~~l~~~p~Lk~i~~~g~G~d~----id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~  149 (351)
T 3jtm_A           74 AYVTAERIKKAKNLKLLLTAGIGSDH----IDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGE  149 (351)
T ss_dssp             CCBCHHHHHHCSSCCEEEESSSCCTT----BCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred             CCCCHHHHhhCCCCeEEEEeCeeecc----cCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCC
Confidence            4688776 789999999999999985    55999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       103 w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      |........+++|+|++|||||+|.||+.+|++|++|||+|++|||++.+.+.+.+.|+...+++++++++||+|++|+|
T Consensus       150 W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P  229 (351)
T 3jtm_A          150 WNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMP  229 (351)
T ss_dssp             CCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSC
T ss_pred             CccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCC
Confidence            98643323467899999999999999999999999999999999998777777777888887899999999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~  262 (304)
                      ++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+|.++|||.+|||++|||+||+
T Consensus       230 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~  309 (351)
T 3jtm_A          230 LTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGT  309 (351)
T ss_dssp             CCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGG
T ss_pred             CCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCCCCC
Q 021995          263 TIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  304 (304)
Q Consensus       263 t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~~~~  304 (304)
                      |.+++.++...+.+||.+|++|++++..|.|+..+.+.+|||
T Consensus       310 t~ea~~~~~~~~~~nl~~~~~g~~~~~~~~i~~~~~~~~~~~  351 (351)
T 3jtm_A          310 TIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR  351 (351)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEECGGGC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCCCceEEecCCccccccC
Confidence            999999999999999999999999888999999999999998

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=4.6e-65  Score=477.61  Aligned_cols=267  Identities=25%  Similarity=0.344  Sum_probs=242.6

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      +++.+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||+++++|++.|++...++.+
T Consensus        48 v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~  123 (334)
T 3kb6_A           48 VFVYDKLTEELLSKMPRLKLIHTRSVGFDH----IDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRV  123 (334)
T ss_dssp             ECTTSCBCHHHHHTCTTCCEEEESSSCCTT----BCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             EeCCCCCCHHHHhcCCCCcEEEECCcccch----hcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccc
Confidence            56678899887 789999999999999985    4599999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      +++.|..... ..+++|.|+|+||||+|+||+.+|+++++|||+|++||+...  +...+.++.+ .++++++++||+|+
T Consensus       124 ~~~~~~~~~~-~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~--~~~~~~~~~~-~~l~ell~~sDivs  199 (334)
T 3kb6_A          124 KKLNFSQDSE-ILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKR--EDLKEKGCVY-TSLDELLKESDVIS  199 (334)
T ss_dssp             HTTCCCCCGG-GCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHTTCEE-CCHHHHHHHCSEEE
T ss_pred             cccccccccc-cccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccc--hhhhhcCcee-cCHHHHHhhCCEEE
Confidence            9999875432 357899999999999999999999999999999999998642  3344556665 48999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCC-------------
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH-------------  245 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~-------------  245 (304)
                      +|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++.++             
T Consensus       200 lh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~  279 (334)
T 3kb6_A          200 LHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLK  279 (334)
T ss_dssp             ECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHH
T ss_pred             EcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999987666             


Q ss_pred             --CccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCC-CCceee
Q 021995          246 --PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP-VQNYIV  294 (304)
Q Consensus       246 --~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~-~~n~~~  294 (304)
                        |||.+|||++|||+||+|.|+++++...+.+||.+|++|++.+ ..|.|+
T Consensus       280 ~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~v~  331 (334)
T 3kb6_A          280 ILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFVV  331 (334)
T ss_dssp             HHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGEEE
T ss_pred             chhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCcCC
Confidence              6788999999999999999999999999999999999999873 345543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=3.6e-63  Score=465.88  Aligned_cols=263  Identities=24%  Similarity=0.410  Sum_probs=241.6

Q ss_pred             ccc-cchhchhHHH-hcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchh
Q 021995           18 GFL-RSSSRFSRHY-ASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPG   94 (304)
Q Consensus        18 ~~~-~~~~~~~~~l-~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~   94 (304)
                      +++ ++.+++++++ +++ |+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+
T Consensus        74 ~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~D~----id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~  149 (345)
T 4g2n_A           74 VLFVTATEAITAEVIRKLQPGLKTIATLSVGYDH----IDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEA  149 (345)
T ss_dssp             EEEECTTSCBCHHHHHHTTTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEEEeCCCCCCHHHHHhhcCCceEEEEcCCcccc----cCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHH
Confidence            444 4457899887 665 799999999999985    569999999999999999999999999999999999999999


Q ss_pred             hHHHHhCCccccc-ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc
Q 021995           95 HHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK  173 (304)
Q Consensus        95 ~~~~~~~~w~~~~-~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~  173 (304)
                      .+.+++|.|.... ....+++|+|+||||||+|.||+.+|++|++|||+|++|||++.+.+...  ++.+.+++++++++
T Consensus       150 ~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~  227 (345)
T 4g2n_A          150 DRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGA  227 (345)
T ss_dssp             HHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHT
T ss_pred             HHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhh
Confidence            9999999997532 12347899999999999999999999999999999999999865544332  77776799999999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCe
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  253 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv  253 (304)
                      ||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++|| +.++|||.+|||
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nv  306 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNI  306 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTE
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 889999999999


Q ss_pred             EEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          254 AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       254 ~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ++|||+|++|.+++.++...+.+||.+|++|+++
T Consensus       307 ilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~  340 (345)
T 4g2n_A          307 FLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP  340 (345)
T ss_dssp             EECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999987

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=7.1e-62  Score=459.76  Aligned_cols=274  Identities=22%  Similarity=0.258  Sum_probs=240.7

Q ss_pred             chhchhHHH-hcCCCcEEEEEe-eecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           22 SSSRFSRHY-ASSGSKKIVGVF-YKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        22 ~~~~~~~~l-~~~~~lk~i~~~-~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      +.+++++++ +++|+||+|+.+ ++|+|+    +|+++|+++||.|+|+||+++.+||||+++++|++.|++..+.+.++
T Consensus        82 ~~~~i~~~~l~~~p~Lk~I~~~~~~G~d~----iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r  157 (365)
T 4hy3_A           82 GQPPLSAETLARMPALRSILNVESNLLNN----MPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQ  157 (365)
T ss_dssp             ECCCCCHHHHTTCTTCCEEECCSSSCCSC----SCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             eCCCCCHHHHhhCCCCeEEEEecccccCc----ccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            557888887 789999999975 788985    55889999999999999999999999999999999999999999999


Q ss_pred             hCCcccccc-cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995          100 SGEWNVAGV-AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       100 ~~~w~~~~~-~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      +|.|.+... ...+.+|+|+||||||+|.||+.+|+++++||++|++||++. +.+.+...|+.. .++++++++||+|+
T Consensus       158 ~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~  235 (365)
T 4hy3_A          158 EGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENGVEP-ASLEDVLTKSDFIF  235 (365)
T ss_dssp             HTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEE
T ss_pred             cCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcCeee-CCHHHHHhcCCEEE
Confidence            999554321 234679999999999999999999999999999999999975 455556677765 48999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccC
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH  258 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPH  258 (304)
                      +|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|. |+||||++||+|.++|||.+|||++|||
T Consensus       236 l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPH  314 (365)
T 4hy3_A          236 VVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAH  314 (365)
T ss_dssp             ECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCS
T ss_pred             EcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCc
Confidence            999999999999999999999999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCCCCC
Q 021995          259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  304 (304)
Q Consensus       259 ia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~~~~  304 (304)
                      +||+|.|++.++...+.+||.+|++|+|+.  +.++.+.+..+++|
T Consensus       315 ia~~t~e~~~~~~~~~~~ni~~~~~G~~~~--~~vn~~~~~~~~~r  358 (365)
T 4hy3_A          315 RAGALDSAFKKMGDMVLEDMDLMDRGLPPM--RCKRAERETVSRMR  358 (365)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHTTCCCC--SSEECCSCCC----
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCCCcc--cccccchhhhhhcc
Confidence            999999999999999999999999999983  43443556666655

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=4.4e-62  Score=456.85  Aligned_cols=265  Identities=24%  Similarity=0.376  Sum_probs=245.2

Q ss_pred             cccc-chhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhh
Q 021995           18 GFLR-SSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGH   95 (304)
Q Consensus        18 ~~~~-~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~   95 (304)
                      +++. ..+++++++ +++|+||+|++.++|+|+    +|+++|.++||.|+|+||+++.+||||+++++|++.|++..++
T Consensus        48 ~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~  123 (330)
T 4e5n_A           48 AMMAFMPDRVDADFLQACPELRVIGCALKGFDN----FDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAAD  123 (330)
T ss_dssp             EEEECTTCCBCHHHHHHCTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             EEEEeCCCCCCHHHHhhCCCCcEEEECCCcccc----cCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHH
Confidence            4443 677898886 778999999999999985    5599999999999999999999999999999999999999999


Q ss_pred             HHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCC
Q 021995           96 HQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD  175 (304)
Q Consensus        96 ~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aD  175 (304)
                      +.+++|.|........+++|.|+||||||+|.||+.+|+++++||++|++|||++.+.+.+...|+... ++++++++||
T Consensus       124 ~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aD  202 (330)
T 4e5n_A          124 AFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSD  202 (330)
T ss_dssp             HHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCS
T ss_pred             HHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCC
Confidence            999999997322223467999999999999999999999999999999999998756666667787665 8999999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCC-------CCCCCCCcc
Q 021995          176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWR  248 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~e-------p~~~~~~l~  248 (304)
                      +|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++|       |++.++|||
T Consensus       203 vV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~  282 (330)
T 4e5n_A          203 FILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALL  282 (330)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHH
T ss_pred             EEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999       999999999


Q ss_pred             CCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          249 YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       249 ~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      .+|||++|||+||+|.++++++...+.+||.+|++|+++
T Consensus       283 ~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~  321 (330)
T 4e5n_A          283 AHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERP  321 (330)
T ss_dssp             TCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999887

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=7.3e-62  Score=458.58  Aligned_cols=270  Identities=23%  Similarity=0.309  Sum_probs=247.8

Q ss_pred             cchhchhHHH-hcCCCcEEEEEeeecc----cCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhh
Q 021995           21 RSSSRFSRHY-ASSGSKKIVGVFYKGN----EYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGH   95 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~----d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~   95 (304)
                      ++.+++++++ +++|+||+|++.++|+    |    ++|+++|+++||.|+|+||+ +.+||||+++++|++.|++..+.
T Consensus        56 ~~~~~~~~~~l~~~~~Lk~I~~~g~G~~~~~d----~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~  130 (352)
T 3gg9_A           56 RERTRVTRQLLDRLPKLKIISQTGRVSRDAGG----HIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYV  130 (352)
T ss_dssp             TTSSCBCHHHHTTCTTCCEEEESSCCCCSSSC----SBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CCCCCCCHHHHhhCCCCeEEEEeCcccCCccC----cccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHH
Confidence            4568898887 7789999999999999    6    56799999999999999999 99999999999999999999999


Q ss_pred             HHHHhCCccccc-----c---cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCH
Q 021995           96 HQVISGEWNVAG-----V---AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL  167 (304)
Q Consensus        96 ~~~~~~~w~~~~-----~---~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l  167 (304)
                      +.+++|.|....     +   ...+++|.|+||||||+|.||+.+|+++++||++|++||++. +.+.+...|+...+++
T Consensus       131 ~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~~~g~~~~~~l  209 (352)
T 3gg9_A          131 ASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN-SKERARADGFAVAESK  209 (352)
T ss_dssp             HHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH-HHHHHHHTTCEECSSH
T ss_pred             HHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC-CHHHHHhcCceEeCCH
Confidence            999999998642     1   124679999999999999999999999999999999999864 3344556788877799


Q ss_pred             HhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCc
Q 021995          168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW  247 (304)
Q Consensus       168 ~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l  247 (304)
                      ++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+|.++||
T Consensus       210 ~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL  289 (352)
T 3gg9_A          210 DALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTL  289 (352)
T ss_dssp             HHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGG
T ss_pred             HHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecC
Q 021995          248 RYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA  296 (304)
Q Consensus       248 ~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~  296 (304)
                      |.+|||++|||+|++|.++++++...+.+||.+|++|+|++.+|....+
T Consensus       290 ~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~~~Vn~~~~~  338 (352)
T 3gg9_A          290 LRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVDSVANPTALA  338 (352)
T ss_dssp             GGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCTTBSCGGGSS
T ss_pred             hcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcccCHHHHH
Confidence            9999999999999999999999999999999999999988777754444

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=9.5e-62  Score=460.17  Aligned_cols=276  Identities=46%  Similarity=0.769  Sum_probs=252.0

Q ss_pred             hchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhC--CcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995           24 SRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAA--GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIS  100 (304)
Q Consensus        24 ~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~--gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~  100 (304)
                      +.+++++ +.+|+||+|++.++|+|+    +|+++|.++  ||.|+|+||+++.+||||++++||++.|++..+++.+++
T Consensus        72 ~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~  147 (364)
T 2j6i_A           72 AYITKERIDKAKKLKLVVVAGVGSDH----IDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIIN  147 (364)
T ss_dssp             CCBCHHHHHHCTTCCEEEESSSCCTT----BCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred             CCCCHHHHhhCCCCeEEEECCccccc----ccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHh
Confidence            3577775 778999999999999985    458999999  999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          101 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       101 ~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                      |.|........+.+|.|++|||||+|+||+.+|++|++||++ |++||+++.+.+.+.+.|+....++++++++||+|++
T Consensus       148 g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l  227 (364)
T 2j6i_A          148 HDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTV  227 (364)
T ss_dssp             TCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEE
T ss_pred             CCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEE
Confidence            999753222246789999999999999999999999999997 9999998766666677787776789999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCC--C---CeE
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM--P---NQA  254 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~--~---nv~  254 (304)
                      |+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+|.++|||.+  |   ||+
T Consensus       228 ~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvi  307 (364)
T 2j6i_A          228 NAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNA  307 (364)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEE
T ss_pred             CCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999  9   999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHcCC-CCCCCceeecCCccCCCC
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQY  303 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~-~~~~~n~~~~~~~~~~~~  303 (304)
                      +|||+|++|.+++.++...+.+|+.+|++|+ |++..|.++.+..|++|.
T Consensus       308 lTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n~v~~~~~y~~~~  357 (364)
T 2j6i_A          308 MTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTKA  357 (364)
T ss_dssp             ECCSCGGGSHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEBTTBC----
T ss_pred             ECCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCceecCCcCcchhh
Confidence            9999999999999999999999999999998 557799999999998873

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1e-61  Score=455.23  Aligned_cols=259  Identities=22%  Similarity=0.358  Sum_probs=212.8

Q ss_pred             ccc-cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhh
Q 021995           18 GFL-RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGH   95 (304)
Q Consensus        18 ~~~-~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~   95 (304)
                      +++ ++.+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||+++|++..+.
T Consensus        74 ~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~----id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~  149 (340)
T 4dgs_A           74 AVATGGGAGLSNEWMEKLPSLGIIAINGVGTDK----VDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGD  149 (340)
T ss_dssp             EEEEETTTCBCHHHHHHCSSCCEEEEESSCCTT----BCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             EEEEcCCCCCCHHHHhhCCCCEEEEECCCCccc----cCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHH
Confidence            444 4667899887 789999999999999984    5699999999999999999999999999999999999999999


Q ss_pred             HHHHhCCcccc-cccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcC
Q 021995           96 HQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC  174 (304)
Q Consensus        96 ~~~~~~~w~~~-~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a  174 (304)
                      +.+++|.|.+. .. ..+++|+|+||||||+|.||+.+|+++++||++|++|||++..     ..+.....++++++++|
T Consensus       150 ~~~~~g~W~~~~~~-~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~a  223 (340)
T 4dgs_A          150 RLVREGRWAAGEQL-PLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDS  223 (340)
T ss_dssp             HHHHTTCC-------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTC
T ss_pred             HHHhcCCcccccCc-CccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcC
Confidence            99999999864 22 2367999999999999999999999999999999999997643     22445567999999999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeE
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA  254 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~  254 (304)
                      |+|++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++|+|.||+||||++||++. +|||.+|||+
T Consensus       224 DvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvi  302 (340)
T 4dgs_A          224 DVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTV  302 (340)
T ss_dssp             SEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCC-SHHHHSSSEE
T ss_pred             CEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999876 4999999999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      +|||+|++|.|+++++...+.+||.+|++|+++
T Consensus       303 lTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~  335 (340)
T 4dgs_A          303 LMPHQGSATVETRMAMGKLVLANLAAHFAGEKA  335 (340)
T ss_dssp             ECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             EcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999987

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=6e-62  Score=454.44  Aligned_cols=270  Identities=21%  Similarity=0.312  Sum_probs=237.8

Q ss_pred             ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchh-h
Q 021995           18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPG-H   95 (304)
Q Consensus        18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~-~   95 (304)
                      .++....++.+.+ +++|+||+|++.++|+|+    +|+++|.++||.|+|+||+++.+||||+++++|++.|++..+ .
T Consensus        43 ~l~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~  118 (324)
T 3evt_A           43 VMYGNHPLLKTILARPTNQLKFVQVISAGVDY----LPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWL  118 (324)
T ss_dssp             EEESCCTHHHHHHHSTTCCCCEEECSSSCCTT----SCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             EEEECCcChHHHHHhhCCCceEEEECCccccc----cCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHH
Confidence            4455445563445 578999999999999985    459999999999999999999999999999999999999998 8


Q ss_pred             HHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCC
Q 021995           96 HQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD  175 (304)
Q Consensus        96 ~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aD  175 (304)
                      +.++++.|.+..   .+++|+|+||||||+|.||+.+|++|++||++|++|||++.+.+....  .....++++++++||
T Consensus       119 ~~~~~~~W~~~~---~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aD  193 (324)
T 3evt_A          119 NQRGARQWALPM---TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATAN  193 (324)
T ss_dssp             HHTTTCCSSCSS---CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCS
T ss_pred             HHHhcCCcccCC---CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCC
Confidence            889999998642   467999999999999999999999999999999999998654332211  123458999999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      +|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+|.++|||.+|||++
T Consensus       194 vV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvil  273 (324)
T 3evt_A          194 FIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLI  273 (324)
T ss_dssp             EEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEE
T ss_pred             EEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCC
Q 021995          256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG  297 (304)
Q Consensus       256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~  297 (304)
                      |||+||+|.++++++...+.+||.+|++|+++ ..|.++.+.
T Consensus       274 TPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~-~~n~V~~~~  314 (324)
T 3evt_A          274 TPHISGQIAHFRATVFPIFAANFAQFVKDGTL-VRNQVDLNR  314 (324)
T ss_dssp             CCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCC-CSCBCC---
T ss_pred             cCccccChHHHHHHHHHHHHHHHHHHHhCCCC-CCceECccc
Confidence            99999999999999999999999999976542 256666553

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=6.2e-61  Score=459.06  Aligned_cols=267  Identities=29%  Similarity=0.450  Sum_probs=238.6

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      +++.+++++++ +++|+||+|++.++|+|    ++|+++|+++||.|+|+||+++.+||||+++++|+++|++....+.+
T Consensus        64 v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d----~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~  139 (416)
T 3k5p_A           64 IRSRTQLTEEIFAAANRLIAVGCFSVGTN----QVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSA  139 (416)
T ss_dssp             ECSSCCBCHHHHHHCTTCCEEEECSSCCT----TBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             EcCCCCCCHHHHHhCCCcEEEEECccccC----ccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhh
Confidence            67888999887 78999999999999998    45699999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      ++|.|.+..  ..+++|+|+|+||||+|.||+.+|+++++|||+|++||+++....    .+.....++++++++||+|+
T Consensus       140 ~~g~W~~~~--~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~  213 (416)
T 3k5p_A          140 HAGGWEKTA--IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVS  213 (416)
T ss_dssp             HTTCCCCCC--TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEE
T ss_pred             hcccccccC--CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEE
Confidence            999998754  246799999999999999999999999999999999998753221    13455679999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCC----CCccCCCCeE
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD----HPWRYMPNQA  254 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~----~~l~~~~nv~  254 (304)
                      +|+|++++|+++++++.|++||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++.+    +|||.+|||+
T Consensus       214 lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvi  293 (416)
T 3k5p_A          214 LHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVI  293 (416)
T ss_dssp             ECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEE
T ss_pred             EeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999998765    7999999999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHc-CCCCCCCceeecC
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFK-GEDFPVQNYIVKA  296 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~-g~~~~~~n~~~~~  296 (304)
                      +|||+||+|.|+++++...+.+||.+|++ |.+.+.+|.+...
T Consensus       294 lTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn~p~~~  336 (416)
T 3k5p_A          294 LTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQ  336 (416)
T ss_dssp             ECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBSSSCCCC
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCceeeCCCcC
Confidence            99999999999999999999999999995 5555777765443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.8e-60  Score=454.07  Aligned_cols=274  Identities=44%  Similarity=0.737  Sum_probs=248.4

Q ss_pred             hchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCC
Q 021995           24 SRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGE  102 (304)
Q Consensus        24 ~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~  102 (304)
                      +.+++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++...++.+++|.
T Consensus       101 ~~i~~~~l~~~p~Lk~I~~~g~G~d~----iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~  176 (393)
T 2nac_A          101 AYLTPERIAKAKNLKLALTAGIGSDH----VDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGG  176 (393)
T ss_dssp             CCBCHHHHHHCTTCCEEEESSSCCTT----BCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             CCCCHHHHhhCCCCcEEEEcCccccc----cCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCC
Confidence            4677776 789999999999999985    56999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       103 w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      |........+.+|.|++|||||+|.||+.+|+++++|||+|++||++..+.+.+...|+....++++++++||+|++|+|
T Consensus       177 W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~P  256 (393)
T 2nac_A          177 WNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCP  256 (393)
T ss_dssp             CCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSC
T ss_pred             CCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecC
Confidence            97532112357899999999999999999999999999999999998766666677788776789999999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~  262 (304)
                      ++++|+++++++.|+.||+|++|||++||+++|+++|.++|++|+|.||+||||++||++.++|||.+||+++|||++++
T Consensus       257 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~  336 (393)
T 2nac_A          257 LHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT  336 (393)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTC
T ss_pred             CchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCC
Q 021995          263 TIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  301 (304)
Q Consensus       263 t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~  301 (304)
                      |.+++.++...+.+||++|++|+++.....++..+.+.|
T Consensus       337 T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~~v~~~~~~~  375 (393)
T 2nac_A          337 TLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAG  375 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEEC-
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCcceeEeccCCcccc
Confidence            999999999999999999999998843333455555554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=5.2e-61  Score=447.71  Aligned_cols=258  Identities=21%  Similarity=0.257  Sum_probs=229.8

Q ss_pred             chhHH-HhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCc
Q 021995           25 RFSRH-YASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEW  103 (304)
Q Consensus        25 ~~~~~-l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w  103 (304)
                      .++++ ++++|+||||++.++|+|+++    ++++. +||.|+|+||+++.+||||+++++|++.|++..+.+.+++|.|
T Consensus        56 ~~~~~~l~~~~~Lk~I~~~~~G~d~id----~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W  130 (324)
T 3hg7_A           56 ARAKPLLAKANKLSWFQSTYAGVDVLL----DARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLW  130 (324)
T ss_dssp             HHHGGGGGGCTTCCEEEESSSCCGGGS----CTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC
T ss_pred             CCCHHHHhhCCCceEEEECCCCCCccC----hHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCC
Confidence            44444 578999999999999999654    55664 5999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995          104 NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       104 ~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ...    .+++|+|+||||||+|.||+.+|++|++||++|++|||++...+...  +.....++++++++||+|++|+|+
T Consensus       131 ~~~----~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPl  204 (324)
T 3hg7_A          131 QSH----PYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPA  204 (324)
T ss_dssp             CCC----CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCC
T ss_pred             cCC----CCcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCC
Confidence            853    35799999999999999999999999999999999999764332211  112346899999999999999999


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT  263 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t  263 (304)
                      +++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+|.++|||.+|||++|||+|++|
T Consensus       205 t~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t  284 (324)
T 3hg7_A          205 TRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS  284 (324)
T ss_dssp             CSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCC
T ss_pred             CHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCC
Q 021995          264 IDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG  297 (304)
Q Consensus       264 ~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~  297 (304)
                      .+  .++...+.+||.+|++|+++  .|.++.+.
T Consensus       285 ~~--~~~~~~~~~nl~~~~~G~~~--~~~V~~~~  314 (324)
T 3hg7_A          285 FP--DDVAQIFVRNYIRFIDGQPL--DGKIDFDK  314 (324)
T ss_dssp             CH--HHHHHHHHHHHHHHHTTCCC--TTBCCCC-
T ss_pred             HH--HHHHHHHHHHHHHHHcCCCC--cceEChhh
Confidence            76  57888999999999999987  46565553

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=2.2e-60  Score=456.02  Aligned_cols=264  Identities=28%  Similarity=0.397  Sum_probs=232.0

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      +++.+++++++ +.+|+||+|++.++|+|    ++|+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+
T Consensus        53 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d----~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~  128 (404)
T 1sc6_A           53 LRSRTHLTEDVINAAEKLVAIGAFAIGTN----QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKA  128 (404)
T ss_dssp             ECSSCCBCHHHHHHCSSCCEEEECSSCCT----TBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             EcCCCCCCHHHHhhCCCCcEEEECCcccC----ccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            57788999887 77899999999999998    55699999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      ++|.|.+..  ..+.+|+|+|+||||+|.||+.+|+++++|||+|++|||+....    ..++....++++++++||+|+
T Consensus       129 ~~g~W~~~~--~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~  202 (404)
T 1sc6_A          129 HRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVS  202 (404)
T ss_dssp             HHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEE
T ss_pred             HcCCccccC--CCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEE
Confidence            999997643  24679999999999999999999999999999999999975432    113555668999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCC----CCCccCCCCeE
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK----DHPWRYMPNQA  254 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~----~~~l~~~~nv~  254 (304)
                      +|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||++.    ++|||.+|||+
T Consensus       203 l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvi  282 (404)
T 1sc6_A          203 LHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVL  282 (404)
T ss_dssp             ECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEE
T ss_pred             EccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999874    57999999999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCcee
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYI  293 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~  293 (304)
                      +|||+|++|.|+++++...+.+|+.+|++|+++ +.+|.+
T Consensus       283 lTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~vn~p  322 (404)
T 1sc6_A          283 LTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFP  322 (404)
T ss_dssp             EECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTBSSSC
T ss_pred             ECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcceeccc
Confidence            999999999999999999999999999997665 555543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=2.2e-60  Score=446.69  Aligned_cols=259  Identities=23%  Similarity=0.264  Sum_probs=232.2

Q ss_pred             ccchhchhHH-H-hcC--CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhh
Q 021995           20 LRSSSRFSRH-Y-ASS--GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGH   95 (304)
Q Consensus        20 ~~~~~~~~~~-l-~~~--~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~   95 (304)
                      +++.++++++ + +++  ++||+|++.++|+|++    |+++|+++||.|+|+||+++.+||||+++++|++.|++..+.
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~i----d~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~  126 (343)
T 2yq5_A           51 LKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTI----NFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFR  126 (343)
T ss_dssp             ECCSSCBCCHHHHHHHHHTTCCEEEESSSCCTTB----CSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             EcCCCCcCHHHHHHhccccCceEEEECceeeccc----chhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHH
Confidence            3456889888 6 555  4699999999999855    588999999999999999999999999999999999999999


Q ss_pred             HHHH-hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcC
Q 021995           96 HQVI-SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC  174 (304)
Q Consensus        96 ~~~~-~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a  174 (304)
                      +.++ +|.|.+.. ...+++|+|+||||||+|.||+.+|+++++||++|++|||++.+   ..+.++.+. ++++++++|
T Consensus       127 ~~~~~~g~~~w~~-~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~~~~~~~~-~l~ell~~a  201 (343)
T 2yq5_A          127 YRMDHDHDFTWPS-NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP---EFEPFLTYT-DFDTVLKEA  201 (343)
T ss_dssp             HHHHHHCCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG---GGTTTCEEC-CHHHHHHHC
T ss_pred             HHHHHcCCccccc-CCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh---hhhcccccc-CHHHHHhcC
Confidence            9999 89876532 23578999999999999999999999999999999999997643   122234444 899999999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC--CCCC--------
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP--APKD--------  244 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep--~~~~--------  244 (304)
                      |+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||  ++.+        
T Consensus       202 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~  281 (343)
T 2yq5_A          202 DIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIP  281 (343)
T ss_dssp             SEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSC
T ss_pred             CEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999  4555        


Q ss_pred             ---CCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          245 ---HPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       245 ---~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                         +|||.+|||++|||+|++|.++++++...+.+||.+|++|+++
T Consensus       282 ~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~  327 (343)
T 2yq5_A          282 EDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKGGRP  327 (343)
T ss_dssp             HHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHHHHHcCCCC
Confidence               4899999999999999999999999999999999999999987

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=4.2e-59  Score=437.47  Aligned_cols=262  Identities=21%  Similarity=0.297  Sum_probs=235.3

Q ss_pred             cchhchhHHH-hcCCC--cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHH
Q 021995           21 RSSSRFSRHY-ASSGS--KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQ   97 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~--lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~   97 (304)
                      .+.+++++++ +++|+  ||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.
T Consensus        53 ~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~  128 (333)
T 1j4a_A           53 YQQLDYIAETLQALADNGITKMSLRNVGVDN----IDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEK  128 (333)
T ss_dssp             CCSSCBCHHHHHHHHHTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cCCCCCCHHHHHhccccCCeEEEECCccccc----ccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHH
Confidence            3456788776 66776  9999999999985    459999999999999999999999999999999999999999999


Q ss_pred             HHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEE
Q 021995           98 VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus        98 ~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV  177 (304)
                      +++|.|.+..  ..+.++.|++|||||+|.||+.+|+++++||++|++||+++.+.  +.+ .+...+++++++++||+|
T Consensus       129 ~~~g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV  203 (333)
T 1j4a_A          129 VARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVI  203 (333)
T ss_dssp             HHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEE
T ss_pred             HHcCCCccCC--cccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEE
Confidence            9999996532  34678999999999999999999999999999999999976432  233 244445899999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC--CCCCC----------
Q 021995          178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP--APKDH----------  245 (304)
Q Consensus       178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep--~~~~~----------  245 (304)
                      ++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++|+|.||+||||++||  +|.++          
T Consensus       204 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~  283 (333)
T 1j4a_A          204 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARL  283 (333)
T ss_dssp             EECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHH
T ss_pred             EEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccch
Confidence            999999999999999999999999999999999999999999999999999999999999999  45544          


Q ss_pred             -CccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcee
Q 021995          246 -PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI  293 (304)
Q Consensus       246 -~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~  293 (304)
                       |||.+|||++|||+|++|.+++.++...+.+|+.+|++|+++  .|.+
T Consensus       284 ~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~--~~~v  330 (333)
T 1j4a_A          284 ADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA--ETPV  330 (333)
T ss_dssp             HHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--SSBC
T ss_pred             hhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCC--Cccc
Confidence             599999999999999999999999999999999999999886  4544

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-58  Score=434.21  Aligned_cols=258  Identities=29%  Similarity=0.465  Sum_probs=234.5

Q ss_pred             cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           21 RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      ++.+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||+++++|++.|++..+.+.++
T Consensus        74 ~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~  149 (335)
T 2g76_A           74 RSATKVTADVINAAEKLQVVGRAGTGVDN----VDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMK  149 (335)
T ss_dssp             CSSSCBCHHHHHHCSSCCEEEESSSSCTT----BCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cCCCCCCHHHHhhCCCCcEEEECCCCcch----hChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            4556788886 779999999999999985    56999999999999999999999999999999999999999999999


Q ss_pred             hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                      +|.|.+..  ..+.+|.|++|||||+|.||+.+|+++++||++|++||++..+ +.+...|+.. .++++++++||+|++
T Consensus       150 ~g~W~~~~--~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l  225 (335)
T 2g76_A          150 DGKWERKK--FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITV  225 (335)
T ss_dssp             TTCCCTGG--GCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEE
T ss_pred             cCCCCccC--CCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEE
Confidence            99997542  2467899999999999999999999999999999999997643 4556677765 489999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV  259 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHi  259 (304)
                      |+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.|| +.++|||.+||+++|||+
T Consensus       226 ~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nvilTPH~  304 (335)
T 2g76_A          226 HTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHL  304 (335)
T ss_dssp             CCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-CSCCHHHHSTTEEECSSC
T ss_pred             ecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-CCCchHHhCCCEEECCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999 567999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          260 SGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       260 a~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      +++|.+++.++...+.+|+.+|++|+++
T Consensus       305 ~~~t~e~~~~~~~~~~~nl~~~~~g~~~  332 (335)
T 2g76_A          305 GASTKEAQSRCGEEIAVQFVDMVKGKSL  332 (335)
T ss_dssp             TTCBHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999986

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=3.8e-59  Score=434.14  Aligned_cols=258  Identities=21%  Similarity=0.290  Sum_probs=226.3

Q ss_pred             hHHH-hcCCCcEEEEEeeecccCCCCccc-HHH---HHhCCcEEEEcCCCC-hhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995           27 SRHY-ASSGSKKIVGVFYKGNEYASMNPN-FLA---AAAAGLTVAEVTGSN-VVSVAEDELMRILILVRNFLPGHHQVIS  100 (304)
Q Consensus        27 ~~~l-~~~~~lk~i~~~~~G~d~~~~~~d-~~~---~~~~gI~v~n~~g~~-~~~vAE~al~~~L~~~R~~~~~~~~~~~  100 (304)
                      ++++ +. |+||+|++.++|+|++.   | +++   +.++||.|+|+++++ +.+||||+++++|++.|++..+.+.+++
T Consensus        51 ~~~~l~~-~~Lk~I~~~~aG~d~i~---d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~  126 (315)
T 3pp8_A           51 PVEMLAG-RRLKAVFVLGAGVDAIL---SKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQ  126 (315)
T ss_dssp             CHHHHTT-CCCSEEEESSSCCHHHH---HHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred             CHHHhCC-CCceEEEECCEeccccc---chhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHh
Confidence            4554 66 99999999999998531   4 665   678999999999875 7999999999999999999999999999


Q ss_pred             CCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995          101 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       101 ~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~  180 (304)
                      |.|...    .+++++|+||||||+|.||+.+|++|++||++|++|||++...+.....  ....++++++++||+|++|
T Consensus       127 g~W~~~----~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~  200 (315)
T 3pp8_A          127 ALWKPL----PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINL  200 (315)
T ss_dssp             TCCCCC----CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEEC
T ss_pred             cccCCC----CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEe
Confidence            999754    3578999999999999999999999999999999999976543221111  1125799999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS  260 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia  260 (304)
                      +|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+|.++|||.+|||++|||+|
T Consensus       201 ~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia  280 (315)
T 3pp8_A          201 LPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIA  280 (315)
T ss_dssp             CCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCS
T ss_pred             cCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCc
Q 021995          261 GTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGE  298 (304)
Q Consensus       261 ~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~  298 (304)
                      ++|.+  +++...+.+||.+|++|+++  .|.|+.+..
T Consensus       281 ~~t~~--~~~~~~~~~ni~~~~~G~~~--~~~V~~~~G  314 (315)
T 3pp8_A          281 AVTRP--AEAIDYISRTITQLEKGEPV--TGQVDRARG  314 (315)
T ss_dssp             SCCCH--HHHHHHHHHHHHHHHHTCCC--CCBCCCC--
T ss_pred             cccHH--HHHHHHHHHHHHHHHcCCCC--CceECcccC
Confidence            99986  57888999999999999987  576666543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.6e-58  Score=425.37  Aligned_cols=255  Identities=31%  Similarity=0.498  Sum_probs=236.5

Q ss_pred             chhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995           22 SSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIS  100 (304)
Q Consensus        22 ~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~  100 (304)
                      +.+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++
T Consensus        52 ~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~  127 (307)
T 1wwk_A           52 SKPKVTRRVIESAPKLKVIARAGVGLDN----IDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE  127 (307)
T ss_dssp             SCSCBCHHHHTTCTTCCEEEESSSCCTT----BCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred             CCCCCCHHHHhhCCCCeEEEECCccccc----cCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHc
Confidence            344688776 778999999999999985    459999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995          101 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       101 ~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~  180 (304)
                      |.|.+..  ..+.+|.|++|||||+|.||+.+|+++++||++|++||+++.+ +.+.+.|+... ++++++++||+|++|
T Consensus       128 g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~  203 (307)
T 1wwk_A          128 GVWAKKE--AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIH  203 (307)
T ss_dssp             TCCCTTT--CCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEEC
T ss_pred             CCCCccC--cCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEe
Confidence            9997522  2467999999999999999999999999999999999997754 45566777664 899999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS  260 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia  260 (304)
                      +|++++|+++++++.|+.||+|++|||++||+++|+++|.++|++|+|.||+||||++||++.++|||.+||+++|||++
T Consensus       204 ~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~  283 (307)
T 1wwk_A          204 VPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIG  283 (307)
T ss_dssp             CCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCT
T ss_pred             cCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHcC
Q 021995          261 GTTIDAQLRYAAGVKDMLDRYFKG  284 (304)
Q Consensus       261 ~~t~e~~~~~~~~~~~~l~~~~~g  284 (304)
                      ++|.+++.++...+.+|+.+|++|
T Consensus       284 ~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          284 ASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             TCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999976

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.1e-58  Score=434.65  Aligned_cols=263  Identities=21%  Similarity=0.337  Sum_probs=235.2

Q ss_pred             cchhchhHHH-hcCCC--cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHH
Q 021995           21 RSSSRFSRHY-ASSGS--KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQ   97 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~--lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~   97 (304)
                      ++.+++++++ +++|+  ||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.
T Consensus        51 ~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~  126 (333)
T 1dxy_A           51 LQTTPYAAGVFEKMHAYGIKFLTIRNVGTDN----IDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQ  126 (333)
T ss_dssp             CCSSCBCHHHHHHHHHTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             cCCCCCCHHHHHhCcccCceEEEEcCcccCc----cCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4457888886 66777  9999999999985    569999999999999999999999999999999999999999999


Q ss_pred             HHhCCccc-ccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCE
Q 021995           98 VISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI  176 (304)
Q Consensus        98 ~~~~~w~~-~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv  176 (304)
                      +++|.|.+ ..  ..+.+|.|++|||||+|.||+.+|+++++||++|++||++..+.  ..+ .+.. .++++++++||+
T Consensus       127 ~~~g~w~~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~-~~l~ell~~aDv  200 (333)
T 1dxy_A          127 LQAGDYEKAGT--FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--DHP-DFDY-VSLEDLFKQSDV  200 (333)
T ss_dssp             HHTTCHHHHTC--CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--CCT-TCEE-CCHHHHHHHCSE
T ss_pred             HHcCCcccccC--CCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--hHh-cccc-CCHHHHHhcCCE
Confidence            99999964 22  24679999999999999999999999999999999999976433  122 2343 489999999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCC--C--------CC--
Q 021995          177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA--P--------KD--  244 (304)
Q Consensus       177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~--~--------~~--  244 (304)
                      |++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+  +        .+  
T Consensus       201 V~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~  280 (333)
T 1dxy_A          201 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPL  280 (333)
T ss_dssp             EEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHH
T ss_pred             EEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999983  1        12  


Q ss_pred             -CCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeec
Q 021995          245 -HPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  295 (304)
Q Consensus       245 -~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~  295 (304)
                       +|||.+|||++|||+|++|.+++.++...+.+|+.+|++|+++  .|.+++
T Consensus       281 ~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~--~~~v~~  330 (333)
T 1dxy_A          281 WDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET--STEVTG  330 (333)
T ss_dssp             HHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCC--TTEECC
T ss_pred             hhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHcCCCC--CceeCC
Confidence             5899999999999999999999999999999999999999876  455554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.8e-57  Score=422.95  Aligned_cols=260  Identities=24%  Similarity=0.353  Sum_probs=238.4

Q ss_pred             cchhchhHHH-hcCCC-cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           21 RSSSRFSRHY-ASSGS-KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~-lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      ++.+++++++ +++|+ ||||++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+.+.+
T Consensus        51 ~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~  126 (320)
T 1gdh_A           51 TLNEKCRKEVIDRIPENIKCISTYSIGFDH----IDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMI  126 (320)
T ss_dssp             ETTSCBCHHHHHHSCTTCCEEEEESSCCTT----BCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCCCCCHHHHHhCCccceEEEECCccccc----ccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            3446888876 77899 9999999999985    5699999999999999999999999999999999999999999999


Q ss_pred             HhCCccccc-ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcC-CCCChhHHHhcCceecCCHHhhcCcCCE
Q 021995           99 ISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDI  176 (304)
Q Consensus        99 ~~~~w~~~~-~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr-~~~~~~~~~~~g~~~~~~l~ell~~aDv  176 (304)
                      ++|.|.... ....+.++.|++|||||+|.||+.+|+++++||++|++||+ ++.+ ..+.+.|+....++++++++||+
T Consensus       127 ~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDv  205 (320)
T 1gdh_A          127 RTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQF  205 (320)
T ss_dssp             HTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSE
T ss_pred             HcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCE
Confidence            999996321 11246789999999999999999999999999999999999 7644 44556787766689999999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEc
Q 021995          177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT  256 (304)
Q Consensus       177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lT  256 (304)
                      |++|+|.+++|+++++++.++.||+|++|||++||+++|+++|.++|++|+|.||++|||+.|| +.++|||.+||+++|
T Consensus       206 Vil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nvilt  284 (320)
T 1gdh_A          206 FSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLF  284 (320)
T ss_dssp             EEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEEC
T ss_pred             EEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999999999 889999999999999


Q ss_pred             cCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          257 PHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       257 PHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ||++++|.+++.++...+ +|+.+|++|+++
T Consensus       285 PH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~  314 (320)
T 1gdh_A          285 PHIGSAATQAREDMAHQA-NDLIDALFGGAD  314 (320)
T ss_dssp             SSCTTCBHHHHHHHHHHH-HHHHHHHHTTSC
T ss_pred             CcCCcCcHHHHHHHHHHH-HHHHHHHcCCCC
Confidence            999999999999999999 999999999886

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=3.7e-57  Score=425.88  Aligned_cols=270  Identities=24%  Similarity=0.358  Sum_probs=242.6

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      +...+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+.+.+
T Consensus        69 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~  144 (347)
T 1mx3_A           69 MYHTITLTREDLEKFKALRIIVRIGSGFDN----IDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQAL  144 (347)
T ss_dssp             ECSSSCBCHHHHTTCSSCCEEEESSSCCTT----BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             EeCCCCCCHHHHhhCCCCCEEEEcccccCc----ccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            44556788776 778999999999999984    5699999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccc-----cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc
Q 021995           99 ISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK  173 (304)
Q Consensus        99 ~~~~w~~~~~-----~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~  173 (304)
                      ++|.|.....     ...+.+|.|++|||||+|.||+.+|++|++||++|++||++..+ ......|+..+.++++++++
T Consensus       145 ~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~  223 (347)
T 1mx3_A          145 REGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGLQRVSTLQDLLFH  223 (347)
T ss_dssp             HTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THHHHHTCEECSSHHHHHHH
T ss_pred             HcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhHhhcCCeecCCHHHHHhc
Confidence            9999953210     01125899999999999999999999999999999999997643 34456677766789999999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPN  252 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~n  252 (304)
                      ||+|++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++|+|.||++|||+.||++ .++||+.+||
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~n  303 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPN  303 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSS
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999987 4789999999


Q ss_pred             eEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCceee
Q 021995          253 QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV  294 (304)
Q Consensus       253 v~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~~  294 (304)
                      +++|||++++|.+++.++...+.+|+.+|++|+++ +..|.++
T Consensus       304 vi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v~  346 (347)
T 1mx3_A          304 LICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVN  346 (347)
T ss_dssp             EEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC
T ss_pred             EEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCC
Confidence            99999999999999999999999999999999876 3456543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=4.3e-58  Score=430.28  Aligned_cols=258  Identities=24%  Similarity=0.330  Sum_probs=232.3

Q ss_pred             cchhchhHHH-hcCCC--cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHH
Q 021995           21 RSSSRFSRHY-ASSGS--KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQ   97 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~--lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~   97 (304)
                      ++.+++++++ +++|+  ||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+.+.
T Consensus        52 ~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~  127 (331)
T 1xdw_A           52 RGNCFANKQNLDIYKKLGVKYILTRTAGTDH----IDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSR  127 (331)
T ss_dssp             CTTCCBCHHHHHHHHHHTCCEEEESSSCCTT----BCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             eCCCCCCHHHHhhCcccCceEEEEccccccc----cCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3457888886 66777  9999999999985    569999999999999999999999999999999999999999999


Q ss_pred             HHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEE
Q 021995           98 VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus        98 ~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV  177 (304)
                      +++|.|.+.. ...+.++.|++|||||+|.||+.+|+++++||++|++||++..+.  ..+ .+.. .++++++++||+|
T Consensus       128 ~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~-~~l~ell~~aDvV  202 (331)
T 1xdw_A          128 TAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--IED-YCTQ-VSLDEVLEKSDII  202 (331)
T ss_dssp             HTTTCCCCCS-TTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--CTT-TCEE-CCHHHHHHHCSEE
T ss_pred             HHcCCCcccc-CcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--HHh-cccc-CCHHHHHhhCCEE
Confidence            9999996411 124678999999999999999999999999999999999976443  122 2343 4899999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCC--CCC-------C---
Q 021995          178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA--PKD-------H---  245 (304)
Q Consensus       178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~--~~~-------~---  245 (304)
                      ++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+  +.+       +   
T Consensus       203 ~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~  282 (331)
T 1xdw_A          203 TIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLF  282 (331)
T ss_dssp             EECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHH
T ss_pred             EEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccch
Confidence            9999999999999999999999999999999999999999999999999999999999999994  332       3   


Q ss_pred             -CccCC-CCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          246 -PWRYM-PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       246 -~l~~~-~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                       |||.+ |||++|||+|++|.+++.++...+.+||.+|++|+++
T Consensus       283 ~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~  326 (331)
T 1xdw_A          283 EKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDC  326 (331)
T ss_dssp             HHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence             79999 9999999999999999999999999999999999876

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.8e-57  Score=422.99  Aligned_cols=256  Identities=21%  Similarity=0.304  Sum_probs=237.4

Q ss_pred             cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           21 RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      ++.+++++++ +++|+||+|++.++|+|+    +|+++|.++||.|+|+||+++.+||||++++||++.|++..+++.++
T Consensus        53 ~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~  128 (313)
T 2ekl_A           53 RSRTKVTKDVIEKGKKLKIIARAGIGLDN----IDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAK  128 (313)
T ss_dssp             CSSSCBCHHHHHHCTTCCEEEECSSCCTT----BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cCCCCCCHHHHhhCCCCeEEEEcCCCCCc----cCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            3456788876 788999999999999985    45999999999999999999999999999999999999999999999


Q ss_pred             hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                      +|.|..    ..+.++.|++|||||+|.||+.+|++++++|++|++||+++.+ ..+.+.|+... ++++++++||+|++
T Consensus       129 ~g~w~~----~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvVvl  202 (313)
T 2ekl_A          129 SGIFKK----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR-EKAEKINAKAV-SLEELLKNSDVISL  202 (313)
T ss_dssp             TTCCCC----CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEE
T ss_pred             cCCCCC----CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcch-hHHHhcCceec-CHHHHHhhCCEEEE
Confidence            999962    3467899999999999999999999999999999999997754 34556777754 89999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCC---CccCCCCeEEc
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH---PWRYMPNQAMT  256 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~---~l~~~~nv~lT  256 (304)
                      |+|.+++|+++++++.++.||+|++|||++||+++|+++|.++|++|++.||+||||++||++ ++   |||.+||+++|
T Consensus       203 ~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nvilt  281 (313)
T 2ekl_A          203 HVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVT  281 (313)
T ss_dssp             CCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEEC
T ss_pred             eccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEEC
Confidence            999999999999999999999999999999999999999999999999999999999999988 56   99999999999


Q ss_pred             cCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          257 PHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       257 PHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ||++++|.++++++...+.+|+.+|++|+|+
T Consensus       282 PH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          282 THIGAQTKEAQKRVAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             CSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999986

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=7.2e-57  Score=418.54  Aligned_cols=255  Identities=29%  Similarity=0.480  Sum_probs=234.2

Q ss_pred             cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           21 RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      +..+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.++
T Consensus        50 ~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~----id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~  125 (311)
T 2cuk_A           50 TVEDRIDAEVMDRAKGLKVIACYSVGVDH----VDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYAR  125 (311)
T ss_dssp             CTTSCBCHHHHHHSTTCCEEECSSSCCTT----BCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCCCCCCHHHHhhCCCCeEEEECCcCccc----cCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            3445788876 778999999999999985    45999999999999999999999999999999999999999999999


Q ss_pred             hCCccccc-ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995          100 SGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       100 ~~~w~~~~-~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      +|.|.... ....+.++.|++|||||+|.||+.+|+++++||++|++|||+..+..      +. ..++++++++||+|+
T Consensus       126 ~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~~-~~~l~ell~~aDvV~  198 (311)
T 2cuk_A          126 DGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------YP-FLSLEELLKEADVVS  198 (311)
T ss_dssp             TTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------SC-BCCHHHHHHHCSEEE
T ss_pred             cCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------cc-cCCHHHHHhhCCEEE
Confidence            99996321 11236789999999999999999999999999999999999775432      22 458999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccC
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH  258 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPH  258 (304)
                      +|+|.+++|+++++++.++.||+|+++||+|||+++|+++|.++|+ |++.||++|||++||++.++|||.+||+++|||
T Consensus       199 l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh  277 (311)
T 2cuk_A          199 LHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPH  277 (311)
T ss_dssp             ECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCS
T ss_pred             EeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCc
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       259 ia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ++++|.+++.++...+.+|+.+|++|+++
T Consensus       278 ~~~~t~~~~~~~~~~~~~nl~~~~~g~~~  306 (311)
T 2cuk_A          278 IGSAGRTTRERMAEVAVENLLAVLEGREP  306 (311)
T ss_dssp             CTTCBHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999876

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.6e-56  Score=419.47  Aligned_cols=256  Identities=23%  Similarity=0.373  Sum_probs=236.1

Q ss_pred             cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           21 RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      ++.+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+.+.++
T Consensus        72 ~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~  147 (333)
T 3ba1_A           72 NSNAGADAELIDALPKLEIVSSFSVGLDK----VDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVR  147 (333)
T ss_dssp             CSSSCBCHHHHHHCTTCCEEEESSSCCTT----BCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCCCCCCHHHHhhCCCCcEEEEcCccccc----cCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4556788876 779999999999999985    56999999999999999999999999999999999999999999999


Q ss_pred             hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                      +|.|.+... ..+.+|.|++|||||+|.||+.+|++++++|++|++||+++....     ++....++++++++||+|++
T Consensus       148 ~g~w~~~~~-~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil  221 (333)
T 3ba1_A          148 RGAWKFGDF-KLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVV  221 (333)
T ss_dssp             TTGGGGCCC-CCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEE
T ss_pred             cCCCCcccc-ccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEE
Confidence            999975321 236789999999999999999999999999999999999764321     55556789999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV  259 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHi  259 (304)
                      |+|.+++|+++++++.++.||++++|||++||.++|+++|.++|++|++.||++|||++||++. +|||.+|||++|||+
T Consensus       222 ~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~  300 (333)
T 3ba1_A          222 ACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHV  300 (333)
T ss_dssp             CSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECSSC
T ss_pred             ecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999876 899999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          260 SGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       260 a~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ++.|.+++.++...+.+|+.+|++|+++
T Consensus       301 ~~~t~e~~~~~~~~~~~nl~~~~~g~~~  328 (333)
T 3ba1_A          301 GSGTVETRKVMADLVVGNLEAHFSGKPL  328 (333)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999886

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=6.5e-57  Score=417.34  Aligned_cols=257  Identities=21%  Similarity=0.283  Sum_probs=232.3

Q ss_pred             HHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccc
Q 021995           28 RHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG  107 (304)
Q Consensus        28 ~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~  107 (304)
                      +.++++|+||+|++.++|+|++|    +++ .++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|....
T Consensus        43 ~~l~~~~~Lk~I~~~~~G~d~id----~~~-~~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~  117 (303)
T 1qp8_A           43 EELAKMPRLKFIQVVTAGLDHLP----WES-IPPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV  117 (303)
T ss_dssp             HHHHHCTTCCCEEBSSSCCTTSC----CTT-SCTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS
T ss_pred             HHHhhCCCCcEEEECCcCccccc----HHH-HhcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC
Confidence            55688999999999999999764    555 4799999999999999999999999999999999999999999996431


Q ss_pred             ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       108 ~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                         ...+|.|++|||||+|.||+.+|++|++||++|++|||++. ..     +.....++++++++||+|++|+|++++|
T Consensus       118 ---~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~-----~~~~~~~l~ell~~aDvV~l~~P~~~~t  188 (303)
T 1qp8_A          118 ---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG-----PWRFTNSLEEALREARAAVCALPLNKHT  188 (303)
T ss_dssp             ---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS-----SSCCBSCSHHHHTTCSEEEECCCCSTTT
T ss_pred             ---CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc-----CcccCCCHHHHHhhCCEEEEeCcCchHH
Confidence               23489999999999999999999999999999999999764 21     3444568999999999999999999999


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC-CCCCCCCCCCccCCCCeEEccCCCcC--CH
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQPAPKDHPWRYMPNQAMTPHVSGT--TI  264 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~-~~ep~~~~~~l~~~~nv~lTPHia~~--t~  264 (304)
                      +++++++.|+.||+|++|||+|||+++|+++|.++|++|+|.||++||| ++||++.++|||.+||+++|||++++  |.
T Consensus       189 ~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~  268 (303)
T 1qp8_A          189 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNE  268 (303)
T ss_dssp             TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCH
T ss_pred             HHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999 88999999999999999999999998  99


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCC
Q 021995          265 DAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  301 (304)
Q Consensus       265 e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~  301 (304)
                      ++++++...+.+||.+|++|+++  .|.++.+ .|++
T Consensus       269 e~~~~~~~~~~~nl~~~~~g~~~--~~~v~~~-~y~~  302 (303)
T 1qp8_A          269 RVWRQMVMEAVRNLITYATGGRP--RNIAKRE-DYIG  302 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCC--SCBCCGG-GTC-
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCC--CceeCHH-HcCC
Confidence            99999999999999999999876  5666555 5543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=2.8e-55  Score=413.80  Aligned_cols=266  Identities=23%  Similarity=0.298  Sum_probs=240.2

Q ss_pred             hhchhHHH-hcCC-CcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995           23 SSRFSRHY-ASSG-SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIS  100 (304)
Q Consensus        23 ~~~~~~~l-~~~~-~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~  100 (304)
                      .+++++++ +++| +||+|++.++|+|    ++|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++
T Consensus        66 ~~~~~~~~l~~~~~~Lk~I~~~~~G~d----~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~  141 (348)
T 2w2k_A           66 SYPWNADLISHLPSSLKVFAAAGAGFD----WLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART  141 (348)
T ss_dssp             GCCBCHHHHTTSCTTCCEEEESSSCCT----TBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTT
T ss_pred             cCCCCHHHHHhcccCceEEEECCcccc----ccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHc
Confidence            45788887 7777 6999999999998    4569999999999999999999999999999999999999999999999


Q ss_pred             CC---ccccc--ccccccccCCCEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcC
Q 021995          101 GE---WNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC  174 (304)
Q Consensus       101 ~~---w~~~~--~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a  174 (304)
                      |.   |....  ....+.+|.|++|||||+|.||+.+|++++ +||++|++||+++.+.+.+.+.|+....++++++++|
T Consensus       142 g~~~~w~~~~~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~a  221 (348)
T 2w2k_A          142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRS  221 (348)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHC
T ss_pred             CCCcccccccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccC
Confidence            99   94211  012357899999999999999999999999 9999999999987666656666777666899999999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeE
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA  254 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~  254 (304)
                      |+|++|+|.+++|+++++++.++.||++++|||++||+++|+++|.++|++|++.||++|||++|| +.++||+.+|||+
T Consensus       222 DvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nvi  300 (348)
T 2w2k_A          222 DCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVT  300 (348)
T ss_dssp             SEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEE
T ss_pred             CEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999 6678899999999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeec
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  295 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~  295 (304)
                      +|||+++.|.+++.++...+.+||.+|++|+++  .|.++.
T Consensus       301 ltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~v~~  339 (348)
T 2w2k_A          301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKP--LLTPAG  339 (348)
T ss_dssp             ECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCC--CSSBCS
T ss_pred             EcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--cceecc
Confidence            999999999999999999999999999999765  344443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.2e-55  Score=411.08  Aligned_cols=267  Identities=29%  Similarity=0.496  Sum_probs=240.9

Q ss_pred             ccc-cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhh
Q 021995           18 GFL-RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGH   95 (304)
Q Consensus        18 ~~~-~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~   95 (304)
                      +++ ++.+++++++ +.+|+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+.
T Consensus        45 ~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~  120 (333)
T 2d0i_A           45 GIIVSPTTKITREVLENAERLKVISCHSAGYDN----IDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD  120 (333)
T ss_dssp             EEEECTTSCBCHHHHTTCTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             EEEECCCCCCCHHHHhhCCCceEEEECCccccc----ccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHH
Confidence            455 6667898886 778999999999999985    4599999999999999999999999999999999999999999


Q ss_pred             HHHHhCCcccccccccc----cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc
Q 021995           96 HQVISGEWNVAGVAYRA----YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML  171 (304)
Q Consensus        96 ~~~~~~~w~~~~~~~~~----~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell  171 (304)
                      +.+++|.|........+    .+|.|++|||||+|.||+.+|+.++++|++|++||+++.. +.+.+.|+... ++++++
T Consensus       121 ~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l  198 (333)
T 2d0i_A          121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELL  198 (333)
T ss_dssp             HHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHH
T ss_pred             HHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHH
Confidence            99999999631101124    6899999999999999999999999999999999997754 44556677654 899999


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCC
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP  251 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~  251 (304)
                      ++||+|++|+|.+++|+++++++.++.||+| +|||++||.++|+++|.++|+++++.||++|||++||++ ++||+.+|
T Consensus       199 ~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~  276 (333)
T 2d0i_A          199 EKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYE  276 (333)
T ss_dssp             HHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCT
T ss_pred             hhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCC
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999988 89999999


Q ss_pred             -CeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceee
Q 021995          252 -NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIV  294 (304)
Q Consensus       252 -nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~  294 (304)
                       |+++|||+++.|.++..++...+.+|+.+|++|+++  .|.++
T Consensus       277 ~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~  318 (333)
T 2d0i_A          277 WETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVP--EDLVN  318 (333)
T ss_dssp             TTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCC--TTBSC
T ss_pred             CCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC--cCccC
Confidence             999999999999999999999999999999999876  34443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.6e-54  Score=405.92  Aligned_cols=266  Identities=24%  Similarity=0.366  Sum_probs=242.2

Q ss_pred             cchhchhHHH-hcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           21 RSSSRFSRHY-ASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        21 ~~~~~~~~~l-~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      ...+++++++ +++ |+||+|++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+.+.+
T Consensus        60 ~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~  135 (330)
T 2gcg_A           60 LLSDHVDKRILDAAGANLKVISTMSVGIDH----LALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV  135 (330)
T ss_dssp             CTTSCBCHHHHHHHCTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCCCCCHHHHHhcCCCceEEEECCccccc----ccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3456788876 677 999999999999985    4599999999999999999999999999999999999999999999


Q ss_pred             HhCCcccc-cccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEE
Q 021995           99 ISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus        99 ~~~~w~~~-~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV  177 (304)
                      ++|.|... .....+.++.|++|||||+|.||+.+|+.++++|++|++||++....+...+.|+... ++++++++||+|
T Consensus       136 ~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvV  214 (330)
T 2gcg_A          136 KNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFI  214 (330)
T ss_dssp             HTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEE
T ss_pred             HcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEE
Confidence            99999642 1112357899999999999999999999999999999999997765555556677665 899999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEcc
Q 021995          178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP  257 (304)
Q Consensus       178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTP  257 (304)
                      ++|+|.+++|+++++++.++.||+|++|||++||+++|+++|.++|++|++.|+++|||++||++.++||+.++|+++||
T Consensus       215 i~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tP  294 (330)
T 2gcg_A          215 VVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILP  294 (330)
T ss_dssp             EECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECC
T ss_pred             EEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcee
Q 021995          258 HVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI  293 (304)
Q Consensus       258 Hia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~  293 (304)
                      |+++.|.+++.++...+.+|+.+|++|+++  .|.+
T Consensus       295 h~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v  328 (330)
T 2gcg_A          295 HIGSATHRTRNTMSLLAANNLLAGLRGEPM--PSEL  328 (330)
T ss_dssp             SCTTCBHHHHHHHHHHHHHHHHHHHHTCCC--TTEE
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--CCCC
Confidence            999999999999999999999999999986  4544

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.4e-54  Score=406.95  Aligned_cols=265  Identities=29%  Similarity=0.466  Sum_probs=239.7

Q ss_pred             cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           21 RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      .+.+++++++ +++|+||||++.++|+|+    +|+++|+++||.|+|+||+++.+||||++++||++.|++..+.+.++
T Consensus        52 ~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~  127 (334)
T 2dbq_A           52 MLSERIDKEVFENAPKLRIVANYAVGYDN----IDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVR  127 (334)
T ss_dssp             CTTSCBCHHHHHTCTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cCCCCCCHHHHhhCCCceEEEECCccccc----ccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4456788876 789999999999999985    55999999999999999999999999999999999999999999999


Q ss_pred             hCCccc-----ccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcC
Q 021995          100 SGEWNV-----AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC  174 (304)
Q Consensus       100 ~~~w~~-----~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a  174 (304)
                      +|.|..     ......+.+|.|++|||||+|.||+.+|+.++++|++|++||++... +...+.|+.. .++++++++|
T Consensus       128 ~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~a  205 (334)
T 2dbq_A          128 SGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRES  205 (334)
T ss_dssp             TSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHC
T ss_pred             cCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhC
Confidence            999961     11112357899999999999999999999999999999999997754 4455667765 4899999999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeE
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA  254 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~  254 (304)
                      |+|++|+|.+++|+++++++.++.||++++|||++||.++|+++|.++|++|++.||++|||++|| +.++||+.+|||+
T Consensus       206 DvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi  284 (334)
T 2dbq_A          206 DFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVV  284 (334)
T ss_dssp             SEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEE
T ss_pred             CEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999 8889999999999


Q ss_pred             EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCceee
Q 021995          255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIV  294 (304)
Q Consensus       255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~  294 (304)
                      +|||+++.|.++..++...+.+||.+|++|+++  .|.++
T Consensus       285 ~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~  322 (334)
T 2dbq_A          285 LTPHIGSASFGAREGMAELVAKNLIAFKRGEIP--PTLVN  322 (334)
T ss_dssp             ECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCC--TTBSC
T ss_pred             ECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC--ccccC
Confidence            999999999999999999999999999999876  34444

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.6e-55  Score=405.09  Aligned_cols=238  Identities=23%  Similarity=0.360  Sum_probs=216.9

Q ss_pred             cCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccccccc
Q 021995           32 SSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR  111 (304)
Q Consensus        32 ~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~  111 (304)
                      ++|+||+|++.++|+|++    |+++|.+++|.++| +|.++.+||||++++||++.|++..+.+.+++|.|.+..    
T Consensus        46 ~~~~Lk~I~~~~~G~d~i----d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----  116 (290)
T 3gvx_A           46 LGKRTKMIQAISAGVDHI----DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP----  116 (290)
T ss_dssp             CCSSCCEEEECSSCCTTS----CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC----
T ss_pred             hhhhhHHHHHHhcCCcee----ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC----
Confidence            789999999999999965    47788887666555 588899999999999999999999999999999998642    


Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      .++|.|+||||||+|.||+.+|++|++||++|++|||++.+.+.     ....+++++++++||+|++|+|++++|++++
T Consensus       117 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li  191 (290)
T 3gvx_A          117 TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMV  191 (290)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhh
Confidence            36899999999999999999999999999999999998654322     3456699999999999999999999999999


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCC-cCCHHHHHHH
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS-GTTIDAQLRY  270 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia-~~t~e~~~~~  270 (304)
                      +++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+   +|||.+||+++|||+| ++|.++++++
T Consensus       192 ~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTPHiag~~t~e~~~~~  268 (290)
T 3gvx_A          192 NSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSPHVAGGMSGEIMDIA  268 (290)
T ss_dssp             SHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECCSCSSCBTTBCCHHH
T ss_pred             hHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCccccCCccchHHHHH
Confidence            99999999999999999999999999999999999999999999999997   8999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 021995          271 AAGVKDMLDRYFKGED  286 (304)
Q Consensus       271 ~~~~~~~l~~~~~g~~  286 (304)
                      ...+.+||.+|++|+-
T Consensus       269 ~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          269 IQLAFENVRNFFEGEG  284 (290)
T ss_dssp             HHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHhhhcCCC
Confidence            9999999999999875

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=7.6e-54  Score=405.88  Aligned_cols=236  Identities=23%  Similarity=0.385  Sum_probs=212.7

Q ss_pred             ccchhchhHHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           20 LRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        20 ~~~~~~~~~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      .++.+++++++..+++||+|++.++|+|++    |+++|+++||.|+|+||+++.+||||+++++|++.|+.        
T Consensus        46 ~~~~~~v~~~ll~~~~Lk~I~~~~~G~D~i----D~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~--------  113 (381)
T 3oet_A           46 VRSVTKVNESLLSGTPINFVGTATAGTDHV----DEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD--------  113 (381)
T ss_dssp             ECTTSCBSHHHHTTSCCCEEEESSSCCTTB----CHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT--------
T ss_pred             ECCCCCCCHHHHcCCCCEEEEEcccccccc----CHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc--------
Confidence            456678999985577899999999999855    59999999999999999999999999999999999852        


Q ss_pred             hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                                  +.+|.|+||||||+|.||+.+|++|++|||+|++||+...    ....+. ...++++++++||+|++
T Consensus       114 ------------g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~----~~~~~~-~~~sl~ell~~aDiV~l  176 (381)
T 3oet_A          114 ------------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRA----ARGDEG-DFRTLDELVQEADVLTF  176 (381)
T ss_dssp             ------------TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHH----HTTCCS-CBCCHHHHHHHCSEEEE
T ss_pred             ------------CCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChH----HhccCc-ccCCHHHHHhhCCEEEE
Confidence                        3479999999999999999999999999999999997421    111222 34689999999999999


Q ss_pred             cCCCChh----hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          180 NTPLTEK----TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       180 ~~p~~~~----t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      |+|++++    |+++++++.|+.||+|++|||+|||++||+++|+++|++|++.||+||||++||++. ++||.++ +++
T Consensus       177 ~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~-~~L~~~~-~i~  254 (381)
T 3oet_A          177 HTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLN-VALLEAV-DIG  254 (381)
T ss_dssp             CCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC-HHHHHHS-SEE
T ss_pred             cCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCc-chhhhCC-EEE
Confidence            9999999    999999999999999999999999999999999999999999999999999999875 4688764 899


Q ss_pred             ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCC
Q 021995          256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGED  286 (304)
Q Consensus       256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~  286 (304)
                      |||+||+|.|++.++...+.+|+.+|+.+.+
T Consensus       255 TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          255 TSHIAGYTLEGKARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             CSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999998854

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=6.7e-52  Score=410.32  Aligned_cols=259  Identities=32%  Similarity=0.486  Sum_probs=240.7

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV   98 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~   98 (304)
                      .++.+++++++ +++|+||+|++.++|+|    ++|+++|.++||.|+|+||+|+.+||||++++||+++|+++.+++.+
T Consensus        50 ~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d----~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~  125 (529)
T 1ygy_A           50 VRSATTVDAEVLAAAPKLKIVARAGVGLD----NVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASL  125 (529)
T ss_dssp             ECSSSCBCHHHHHTCTTCCEEEESSSCCT----TBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             EcCCCCCCHHHHhhCCCCcEEEECCcCcC----ccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            46678898886 78899999999999998    45699999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi  178 (304)
                      ++|.|.+..  +.+.+|.|++|||||+|.||+.+|++|+++|++|++||++. ..+.+.+.|+... ++++++++||+|+
T Consensus       126 ~~g~w~~~~--~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~e~~~~aDvV~  201 (529)
T 1ygy_A          126 REHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV-SPARAAQLGIELL-SLDDLLARADFIS  201 (529)
T ss_dssp             HTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS-CHHHHHHHTCEEC-CHHHHHHHCSEEE
T ss_pred             HhCCCcccC--cCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCcEEc-CHHHHHhcCCEEE
Confidence            999997643  34679999999999999999999999999999999999976 3455667788766 8999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccC
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH  258 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPH  258 (304)
                      +|+|.++.|+++++++.++.||+|+++||++||.++|+++|+++|++|++.||++|||+.||. .++|||+++|+++|||
T Consensus       202 l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh  280 (529)
T 1ygy_A          202 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPH  280 (529)
T ss_dssp             ECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSS
T ss_pred             ECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccc
Confidence            999999999999999899999999999999999999999999999999999999999999996 6899999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       259 ia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      ++++|.++++++...+.+++.+|+.|+++
T Consensus       281 ~~~~t~ea~~~~~~~~~~~l~~~l~~~~~  309 (529)
T 1ygy_A          281 LGASTAEAQDRAGTDVAESVRLALAGEFV  309 (529)
T ss_dssp             CSSCBHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999875

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.1e-51  Score=389.92  Aligned_cols=237  Identities=26%  Similarity=0.402  Sum_probs=213.5

Q ss_pred             ccchhchhHHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995           20 LRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI   99 (304)
Q Consensus        20 ~~~~~~~~~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~   99 (304)
                      .++.+++++++..+|+||+|++.++|+|++    |+++|+++||.|+|+||+++.+||||+++++|++.|+.        
T Consensus        43 ~~~~~~~~~~~l~~~~Lk~I~~~~~G~D~i----D~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~--------  110 (380)
T 2o4c_A           43 VRSVTEVSRAALAGSPVRFVGTCTIGTDHL----DLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR--------  110 (380)
T ss_dssp             ECTTSCBCHHHHTTSCCCEEEECSSCSTTB----CHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH--------
T ss_pred             EcCCCCCCHHHhcCCCceEEEEcCcccchh----hHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh--------
Confidence            356678988874489999999999999855    58999999999999999999999999999999999862        


Q ss_pred             hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995          100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~  179 (304)
                                  +.+|.|++|||||+|+||+.+|++|++||++|++||++...    ...+.. ..++++++++||+|++
T Consensus       111 ------------~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~----~~~g~~-~~~l~ell~~aDvV~l  173 (380)
T 2o4c_A          111 ------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQA----REPDGE-FVSLERLLAEADVISL  173 (380)
T ss_dssp             ------------TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHH----HSTTSC-CCCHHHHHHHCSEEEE
T ss_pred             ------------hcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhh----hccCcc-cCCHHHHHHhCCEEEE
Confidence                        24799999999999999999999999999999999975311    123433 4589999999999999


Q ss_pred             cCCCChh----hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          180 NTPLTEK----TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       180 ~~p~~~~----t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      |+|++++    |+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++ +++|+. +|+++
T Consensus       174 ~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~  251 (380)
T 2o4c_A          174 HTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-DPELAA-RCLIA  251 (380)
T ss_dssp             CCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEE
T ss_pred             eccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCC-chhhcc-CCEEE
Confidence            9999999    99999999999999999999999999999999999999999999999999999965 456776 59999


Q ss_pred             ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      |||+||+|.+++.++...+.+|+.+|++|++.
T Consensus       252 TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~  283 (380)
T 2o4c_A          252 TPHIAGYSLEGKLRGTAQIYQAYCAWRGIAER  283 (380)
T ss_dssp             CSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999863

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=6.4e-36  Score=290.42  Aligned_cols=225  Identities=14%  Similarity=0.115  Sum_probs=193.7

Q ss_pred             CCcEEEE-EeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccc
Q 021995           34 GSKKIVG-VFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA  112 (304)
Q Consensus        34 ~~lk~i~-~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~  112 (304)
                      ++++.|+ ..++|+|+      +.+|.++||.|+|+++++. +|||       ++.|++....+.+++| |.+.    .+
T Consensus       192 ~~l~gi~eet~~Gvd~------l~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r~----~~  252 (479)
T 1v8b_A          192 KKIIGVSEETTTGVLR------LKKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMRA----TD  252 (479)
T ss_dssp             TTCCEEEECSHHHHHH------HHHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHHH----HC
T ss_pred             cCeEEEEEeeCccHhH------HHHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhhc----cc
Confidence            7888888 67889984      4689999999999999999 9999       3456666666666777 8642    35


Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++.|++|||||+|.||+.+|+++++||++|++||+++.....+...|+.. .++++++++||+|++|+    .|+++|+
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~----~t~~lI~  327 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCT----GNVDVIK  327 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECC----SSSSSBC
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECC----ChhhhcC
Confidence            689999999999999999999999999999999999764333445567654 48999999999999995    5789999


Q ss_pred             HHHHhcCCCCCEEEEcCCCch-hchHHHHH--HHHcCCceEEEeecCCCCCCCCCCCccCC--CCeEEccCCC-cCCHH-
Q 021995          193 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD--ACSSGHIAGYSGDVWNPQPAPKDHPWRYM--PNQAMTPHVS-GTTID-  265 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~--aL~~g~i~ga~lDV~~~ep~~~~~~l~~~--~nv~lTPHia-~~t~e-  265 (304)
                      ++.|+.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||   |+|.++|||.+  ||+++| |+| |.+.+ 
T Consensus       328 ~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~t-H~atghp~e~  402 (479)
T 1v8b_A          328 LEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLNL-GCATGHPAFV  402 (479)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HSSCCSCHHH
T ss_pred             HHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEEE-eccCCCCchh
Confidence            999999999999999999999 99999999  99999999 899998   45568899988  999999 999 66766 


Q ss_pred             HHHHHHHHHHHHHHHHHcCC--CC
Q 021995          266 AQLRYAAGVKDMLDRYFKGE--DF  287 (304)
Q Consensus       266 ~~~~~~~~~~~~l~~~~~g~--~~  287 (304)
                      +..++...+.+|+..|++|+  ++
T Consensus       403 ~~~s~a~~~~~ni~~~~~g~~~~l  426 (479)
T 1v8b_A          403 MSFSFCNQTFAQLDLWQNKDTNKY  426 (479)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcC
Confidence            67788889999999999998  76

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=3.4e-36  Score=293.34  Aligned_cols=224  Identities=14%  Similarity=0.143  Sum_probs=188.3

Q ss_pred             CCcEEEE-EeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccc
Q 021995           34 GSKKIVG-VFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA  112 (304)
Q Consensus        34 ~~lk~i~-~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~  112 (304)
                      |+++.|+ ..++|+|+      +.+|.++||.|+|+++++. +|||+.       .|++....+...+| |.+    ..+
T Consensus       212 ~~l~gi~eet~~Gvd~------l~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~----~~g  272 (494)
T 3d64_A          212 AHIKGVTEETTTGVHR------LYQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR----ATD  272 (494)
T ss_dssp             TTCCCEEECSHHHHHH------HHHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH----HHC
T ss_pred             hCcEEEEEEcccCHhh------HHHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh----ccc
Confidence            7888888 77889984      4689999999999999999 999954       35554444444555 753    235


Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++.|++|||||+|.||+.+|++|++||++|++||+++.....+...|+... ++++++++||+|++|+    .|+++|+
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~-~l~ell~~aDiVi~~~----~t~~lI~  347 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVV-TMEYAADKADIFVTAT----GNYHVIN  347 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEEC-CHHHHTTTCSEEEECS----SSSCSBC
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeC-CHHHHHhcCCEEEECC----CcccccC
Confidence            6899999999999999999999999999999999997643323345566654 8999999999999998    4789999


Q ss_pred             HHHHhcCCCCCEEEEcCCCch-hchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCC--CCeEEccCCC-cCCHH-HH
Q 021995          193 KDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM--PNQAMTPHVS-GTTID-AQ  267 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~--~nv~lTPHia-~~t~e-~~  267 (304)
                      ++.|+.||+|++|||+|||++ ||+++| ++|++|+|+ +++|+|   |+|.++|||.+  ||+++| |+| +.+.+ +.
T Consensus       348 ~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~  421 (494)
T 3d64_A          348 HDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPDGKRVILLAEGRLVNL-GCATGHPSFVMS  421 (494)
T ss_dssp             HHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHH
T ss_pred             HHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCCCCchhhcCCCCEEEE-eCcCCCCHHHHH
Confidence            999999999999999999999 699999 999999998 555654   77788999998  999999 999 66755 67


Q ss_pred             HHHHHHHHHHHHHHHcCCCC
Q 021995          268 LRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       268 ~~~~~~~~~~l~~~~~g~~~  287 (304)
                      .++...+.+|+..|++|+++
T Consensus       422 ~~~a~~~~~ni~~~~~g~~~  441 (494)
T 3d64_A          422 NSFTNQTLAQIELFTRGGEY  441 (494)
T ss_dssp             HHHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHHHHcCCCC
Confidence            88888999999999999887

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.92  E-value=5.8e-25  Score=202.06  Aligned_cols=157  Identities=15%  Similarity=0.199  Sum_probs=133.2

Q ss_pred             chhchhHHH-hcCCCcEEEEEeeecccCCCCcccH-HHHHhCCcEEEEcC------CCChhHHHHHHHHHHHHHHhCcch
Q 021995           22 SSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNF-LAAAAAGLTVAEVT------GSNVVSVAEDELMRILILVRNFLP   93 (304)
Q Consensus        22 ~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~-~~~~~~gI~v~n~~------g~~~~~vAE~al~~~L~~~R~~~~   93 (304)
                      .++++++++ +.+|+||+|.   +|+|    ++|+ ++|+++||.|+|+|      ++++.+|||++++++|..      
T Consensus        82 ~~~~~~~~~l~~~~~l~~i~---~G~d----~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~------  148 (293)
T 3d4o_A           82 ESIVLTEEMIEKTPNHCVVY---SGIS----NTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH------  148 (293)
T ss_dssp             CCCBCCHHHHHTSCTTCEEE---ESSC----CHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             CCccchHHHHHhCCCCCEEE---ecCC----CHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh------
Confidence            345687765 7899999997   7887    5667 79999999999998      889999999999998863      


Q ss_pred             hhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhhc
Q 021995           94 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTML  171 (304)
Q Consensus        94 ~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~l~ell  171 (304)
                                       .+.++.|++|||||+|.||+.+++.++++|++|++|||++.+.+...+.|+..  ..++++++
T Consensus       149 -----------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l  211 (293)
T 3d4o_A          149 -----------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQEL  211 (293)
T ss_dssp             -----------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHT
T ss_pred             -----------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHh
Confidence                             12468999999999999999999999999999999999764444445566654  25788999


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      +++|+|++|+|.     ++++++.++.||+++++||++||+.
T Consensus       212 ~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          212 RDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             TTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             cCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            999999999995     6888899999999999999999764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.90  E-value=1.8e-25  Score=218.36  Aligned_cols=217  Identities=18%  Similarity=0.179  Sum_probs=171.6

Q ss_pred             EeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEE
Q 021995           41 VFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTV  120 (304)
Q Consensus        41 ~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~v  120 (304)
                      ..++|+|+      +.++.++||.++|+++.+. +|||+.+       |++.........+ |.+.    .+..+.|++|
T Consensus       217 etgtGVd~------l~a~~~~Gilv~~~~~vn~-sVae~~~-------r~l~~~~~s~~~g-~~r~----~~~~l~GktV  277 (494)
T 3ce6_A          217 ETTTGVLR------LYQFAAAGDLAFPAINVND-SVTKSKF-------DNKYGTRHSLIDG-INRG----TDALIGGKKV  277 (494)
T ss_dssp             CSHHHHHH------HHHHHHTTCCCSCEEECTT-SHHHHTT-------HHHHHHHHHHHHH-HHHH----HCCCCTTCEE
T ss_pred             EeCCChhH------HHHHHHcCCEEEecCCccH-HHHHHHH-------hhhhhhhhhhhHH-HHhc----cCCCCCcCEE
Confidence            45678874      4688999999999999998 9999533       3332222222222 4321    2346899999


Q ss_pred             EEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCC
Q 021995          121 GTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK  200 (304)
Q Consensus       121 gIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk  200 (304)
                      +|+|+|.||+.+|+.++++|++|+++|+++.+.+.+.+.|+.. .+++++++++|+|+.|++    +.++++.+.++.||
T Consensus       278 ~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk  352 (494)
T 3ce6_A          278 LICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATG----NKDIIMLEHIKAMK  352 (494)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSC
T ss_pred             EEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcC
Confidence            9999999999999999999999999999776556667788875 489999999999999986    45688889999999


Q ss_pred             CCCEEEEcCCCch-hchHHHHH-HHHcCCceEEEeecCCCCCCCCCCC--ccCCCCeE----EccCCCcCCHHHHHHHHH
Q 021995          201 KGVLIVNNARGAI-MDTQAVVD-ACSSGHIAGYSGDVWNPQPAPKDHP--WRYMPNQA----MTPHVSGTTIDAQLRYAA  272 (304)
Q Consensus       201 ~g~ilVn~~rg~~-vd~~aL~~-aL~~g~i~ga~lDV~~~ep~~~~~~--l~~~~nv~----lTPHia~~t~e~~~~~~~  272 (304)
                      +|+++||+||++. +|..+|.. +|+++.+. ..+|+|+.++.  .++  ++..++++    +|||+++.+.++   +..
T Consensus       353 ~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~~~  426 (494)
T 3ce6_A          353 DHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLLNLGNATGHPSFVMSNS---FAN  426 (494)
T ss_dssp             TTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCHHHHHSCCSCHHHHHHH---HHH
T ss_pred             CCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEEeccCCCCCccccchHH---HHH
Confidence            9999999999999 89999998 88888888 56798865331  344  55567887    999999987765   356


Q ss_pred             HHHHHHHHHHcCCCC
Q 021995          273 GVKDMLDRYFKGEDF  287 (304)
Q Consensus       273 ~~~~~l~~~~~g~~~  287 (304)
                      .+.+++..|.+|+++
T Consensus       427 qa~~ai~~~~~g~~~  441 (494)
T 3ce6_A          427 QTIAQIELWTKNDEY  441 (494)
T ss_dssp             HHHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            788899999998776

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.89  E-value=1e-22  Score=193.54  Aligned_cols=219  Identities=14%  Similarity=0.148  Sum_probs=162.1

Q ss_pred             eee--ccccccchhchhHHHh-cCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEE----------EcCCCChhHHHHH
Q 021995           13 AFA--SSGFLRSSSRFSRHYA-SSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVA----------EVTGSNVVSVAED   79 (304)
Q Consensus        13 ~~~--~~~~~~~~~~~~~~l~-~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~----------n~~g~~~~~vAE~   79 (304)
                      ..|  .+.++....++.+++. ..+...++.....+.|    ...++++.++||++.          |.|.+  .++||+
T Consensus        63 ~~~~~adii~~vk~p~~~e~~~l~~~~~l~~~~~~~~~----~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~  136 (377)
T 2vhw_A           63 QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAAS----RACTDALLDSGTTSIAYETVQTADGALPLL--APMSEV  136 (377)
T ss_dssp             HHHHHCSEEECSSCCCGGGGGGCCTTCEEEECCCGGGC----HHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHH
T ss_pred             HHhccCCEEEEeCCCChHHHhhcCCCCEEEEEecccCC----HHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHH
Confidence            445  3456666777888874 4577777776655554    455788999999998          55554  466799


Q ss_pred             HHHHHHHHH-hCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh
Q 021995           80 ELMRILILV-RNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE  158 (304)
Q Consensus        80 al~~~L~~~-R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~  158 (304)
                      +..+++.+. |++.    ....|+|....   ...++.|++|+|+|+|.||+.+++.++++|++|+++|+++...+.+.+
T Consensus       137 ag~~a~~~a~r~l~----~~~~g~~~~~~---~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~  209 (377)
T 2vhw_A          137 AGRLAAQVGAYHLM----RTQGGRGVLMG---GVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDA  209 (377)
T ss_dssp             HHHHHHHHHHHHTS----GGGTSCCCCTT---CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HhcCCCccccc---CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            986555554 6663    23344433211   123689999999999999999999999999999999997654444444


Q ss_pred             -cCce------ecCCHHhhcCcCCEEEEcC--CCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          159 -TGAK------FEEDLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       159 -~g~~------~~~~l~ell~~aDvVi~~~--p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       .|..      ...+++++++++|+|+.++  |.+ ++.++++++.++.||+|+++||++..             .|   
T Consensus       210 ~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~G---  272 (377)
T 2vhw_A          210 EFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QG---  272 (377)
T ss_dssp             HTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TT---
T ss_pred             hcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CC---
Confidence             4543      1235778888999999976  544 67889999999999999999999921             11   


Q ss_pred             EEEeecCCC-CCCCCCCCccCCCCeE--EccCCCcCCHH
Q 021995          230 GYSGDVWNP-QPAPKDHPWRYMPNQA--MTPHVSGTTID  265 (304)
Q Consensus       230 ga~lDV~~~-ep~~~~~~l~~~~nv~--lTPHia~~t~e  265 (304)
                      |    ||+. ||.+.++|++..+|++  .|||+++.+..
T Consensus       273 g----v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          273 G----CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             C----SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHH
T ss_pred             C----ccccccCCCCCCCEEEECCEEEEecCCcchhhHH
Confidence            1    6787 8988889999999998  89999999866

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.86  E-value=4.3e-22  Score=183.45  Aligned_cols=159  Identities=16%  Similarity=0.224  Sum_probs=124.7

Q ss_pred             hhHHH-hcCCCcEEEEEeeecccCCCCccc-HHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCc
Q 021995           26 FSRHY-ASSGSKKIVGVFYKGNEYASMNPN-FLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEW  103 (304)
Q Consensus        26 ~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d-~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w  103 (304)
                      +++++ +.+|++|+|.   +|+|    ++| +++|.++||.|+|+|+++  ++         ++.|++...     +|.|
T Consensus        88 ~~~~~l~~~~~l~~i~---~g~~----~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~  144 (300)
T 2rir_A           88 LKQDHLDRTPAHCVIF---SGIS----NAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTI  144 (300)
T ss_dssp             CCHHHHHTSCTTCEEE---ESSC----CHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHH
T ss_pred             chHHHHhhcCCCCEEE---EecC----CHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHH
Confidence            76654 7899999988   7885    788 889999999999999974  33         223443322     3445


Q ss_pred             ccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhhcCcCCEEEEcC
Q 021995          104 NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       104 ~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~l~ell~~aDvVi~~~  181 (304)
                      ... ....+.++.|++|||||+|.||+.+++.|+++|++|++|||+..+.+...+.|+..  ..++++++++||+|++|+
T Consensus       145 ~~~-~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~  223 (300)
T 2rir_A          145 MLA-IQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTI  223 (300)
T ss_dssp             HHH-HHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECC
T ss_pred             HHH-HHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECC
Confidence            421 11235689999999999999999999999999999999999764333334456543  357899999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      |.     ++++++.++.||+++++||++||+.
T Consensus       224 p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          224 PS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             SS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             Ch-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            96     6888899999999999999999864

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.80  E-value=5.1e-21  Score=183.62  Aligned_cols=155  Identities=14%  Similarity=0.183  Sum_probs=122.0

Q ss_pred             ccc-cCCCEEEEEeeChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCE-EEEcCCCChhhh
Q 021995          112 AYD-LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI-VVVNTPLTEKTR  188 (304)
Q Consensus       112 ~~~-L~g~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv-Vi~~~p~~~~t~  188 (304)
                      +.+ |+|+||||+|+|+||+.+|++|++ ||++|++++++...     .+..... +++++++.+|. .++ +|+ ++|+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~-----~~~~~gv-dl~~L~~~~d~~~~l-~~l-~~t~  277 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG-----IYNPDGL-NADEVLKWKNEHGSV-KDF-PGAT  277 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE-----EEEEEEE-CHHHHHHHHHHHSSS-TTC-TTSE
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc-----ccCccCC-CHHHHHHHHHhcCEe-ecC-ccCe
Confidence            446 999999999999999999999999 99999999543211     1111222 56666665443 222 465 5677


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCC-CCccCCCCeEEccCC----C---
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD-HPWRYMPNQAMTPHV----S---  260 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~-~~l~~~~nv~lTPHi----a---  260 (304)
                      + ++.+.|..||+ .+|||++||.+||+++ +++|+.+.|.+++     +||++++ ++|+..+||++|||+    +   
T Consensus       278 ~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt  349 (419)
T 1gtm_A          278 N-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVT  349 (419)
T ss_dssp             E-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHH
T ss_pred             e-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcce
Confidence            7 78888999998 5999999999999999 6999999999876     7887654 689999999999999    5   


Q ss_pred             --------------cCCHHHHHHHHHHHHHHHHHHH
Q 021995          261 --------------GTTIDAQLRYAAGVKDMLDRYF  282 (304)
Q Consensus       261 --------------~~t~e~~~~~~~~~~~~l~~~~  282 (304)
                                    +.+.|...++...+.+++.+++
T Consensus       350 ~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          350 VSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence                          4566778888888888888776

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.79  E-value=9.3e-20  Score=172.57  Aligned_cols=244  Identities=14%  Similarity=0.111  Sum_probs=157.3

Q ss_pred             eee-ccccccchhchhHHHhcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEE---EcCCC-Ch----hHHHHHHH-
Q 021995           13 AFA-SSGFLRSSSRFSRHYASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVA---EVTGS-NV----VSVAEDEL-   81 (304)
Q Consensus        13 ~~~-~~~~~~~~~~~~~~l~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~---n~~g~-~~----~~vAE~al-   81 (304)
                      ..| .+.++....++.+++..+ +.+++++....+.+    ..+++++.++||++.   +.+.. ..    .++++.+- 
T Consensus        62 ~~~~ad~il~vk~p~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~  137 (369)
T 2eez_A           62 EAWGAEMVVKVKEPLPEEYGFLREGLILFTYLHLAAD----RGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGR  137 (369)
T ss_dssp             HHTTSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGC----HHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHH
T ss_pred             ceecCCEEEEECCCCHHHHhhcCCCcEEEEEecccCC----HHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHH
Confidence            355 335666677778888664 78999998887775    456889999999998   44432 11    45555544 


Q ss_pred             -HHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-c
Q 021995           82 -MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-T  159 (304)
Q Consensus        82 -~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~  159 (304)
                       +.++. .+.+.....  .++.|..     ...++.+++|+|+|.|.||+.+++.++.+|++|+++|+++...+...+ .
T Consensus       138 ~av~~a-~~~l~~~~~--g~~~~~~-----~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~  209 (369)
T 2eez_A          138 MAPQVG-AQFLEKPKG--GRGVLLG-----GVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF  209 (369)
T ss_dssp             HHHHHH-HHHTSGGGT--SCCCCTT-----CBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHH-HHHHHHhcC--CCceecC-----CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc
Confidence             33333 332322211  1112211     123689999999999999999999999999999999997644443333 4


Q ss_pred             Cce------ecCCHHhhcCcCCEEEEcCCCCh-hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995          160 GAK------FEEDLDTMLPKCDIVVVNTPLTE-KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  232 (304)
Q Consensus       160 g~~------~~~~l~ell~~aDvVi~~~p~~~-~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~  232 (304)
                      |..      ..++++++++++|+|+.|++... .+..++.++.++.||+++++||++-.             .|   |+ 
T Consensus       210 g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-  272 (369)
T 2eez_A          210 GGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-  272 (369)
T ss_dssp             TTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-----------------------
T ss_pred             CceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-
Confidence            432      12356778889999999998765 57788899999999999999999822             12   44 


Q ss_pred             eecCCCCCCCCCCCccCCCCeE---------EccCCCcC--CHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995          233 GDVWNPQPAPKDHPWRYMPNQA---------MTPHVSGT--TIDAQLRYAAGVKDMLDRYFKGEDF  287 (304)
Q Consensus       233 lDV~~~ep~~~~~~l~~~~nv~---------lTPHia~~--t~e~~~~~~~~~~~~l~~~~~g~~~  287 (304)
                      +|++  ||.+.+.|++..+|++         +|||+++.  +.+....+...+.++++.++.++++
T Consensus       273 ~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l  336 (369)
T 2eez_A          273 VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAAL  336 (369)
T ss_dssp             ---------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHH
T ss_pred             CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHH
Confidence            8988  6777778899899999         88998885  4566777777777777778777655

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.75  E-value=3.3e-18  Score=163.75  Aligned_cols=145  Identities=14%  Similarity=0.163  Sum_probs=112.3

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHh
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL  136 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l  136 (304)
                      .+.+.+|+|.|++.....+..+...+..-++.+.+       .+         ..+.++.|++|||+|+|.||+.+|++|
T Consensus       167 ~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi-------~r---------atg~~L~GktVgIiG~G~IG~~vA~~L  230 (436)
T 3h9u_A          167 QRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI-------KR---------ATDVMIAGKTACVCGYGDVGKGCAAAL  230 (436)
T ss_dssp             HHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH-------HH---------HHCCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             HcCCCCCceEeechhhhhhhhhccccchHHHHHHH-------HH---------hcCCcccCCEEEEEeeCHHHHHHHHHH
Confidence            34578999999987555554433333222222211       10         124579999999999999999999999


Q ss_pred             ccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch-hc
Q 021995          137 KPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MD  215 (304)
Q Consensus       137 ~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~-vd  215 (304)
                      ++||++|+++|+++.....+...|.... ++++++++||+|+++.    .|.++|+++.|+.||+|++|||+|||.+ ||
T Consensus       231 ka~Ga~Viv~D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~----gt~~iI~~e~l~~MK~gAIVINvgRg~vEID  305 (436)
T 3h9u_A          231 RGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTT----GNDDIITSEHFPRMRDDAIVCNIGHFDTEIQ  305 (436)
T ss_dssp             HHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECS----SCSCSBCTTTGGGCCTTEEEEECSSSGGGBC
T ss_pred             HHCCCEEEEECCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECC----CCcCccCHHHHhhcCCCcEEEEeCCCCCccC
Confidence            9999999999997654445566777654 8999999999999743    4778999999999999999999999997 89


Q ss_pred             hHHHHHH
Q 021995          216 TQAVVDA  222 (304)
Q Consensus       216 ~~aL~~a  222 (304)
                      .++|.+.
T Consensus       306 ~~~L~~~  312 (436)
T 3h9u_A          306 VAWLKAN  312 (436)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.72  E-value=5e-18  Score=162.42  Aligned_cols=193  Identities=18%  Similarity=0.201  Sum_probs=133.8

Q ss_pred             ceee-ccccccchhchhHHHhcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHH---HH
Q 021995           12 NAFA-SSGFLRSSSRFSRHYASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRI---LI   86 (304)
Q Consensus        12 ~~~~-~~~~~~~~~~~~~~l~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~---L~   86 (304)
                      ...| .+.++...++..++++.+ |++++|+....|+|    +++++++.++||+|.+.     +.|+|++.++.   |+
T Consensus        68 ~~~~~adiil~vk~p~~~~i~~l~~~~~li~~~~~~~d----~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~  138 (401)
T 1x13_A           68 NSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQN----PELMQKLAERNVTVMAM-----DSVPRISRAQSLDALS  138 (401)
T ss_dssp             GGGGSSSEEECSSCCCHHHHTTCCTTCEEEECCCGGGC----HHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHH
T ss_pred             HHHhcCCeEEEeCCCCHHHHHHhcCCCcEEEEecCCCC----HHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHH
Confidence            3455 556666666666778765 78999999999886    56799999999999753     34444333332   22


Q ss_pred             HHhCcchhhHHHHhCCcccccc-c---ccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce
Q 021995           87 LVRNFLPGHHQVISGEWNVAGV-A---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK  162 (304)
Q Consensus        87 ~~R~~~~~~~~~~~~~w~~~~~-~---~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~  162 (304)
                      ..+.+. .+..++.+.|..... .   ....++.|++|+|+|+|.||..+++.++.+|++|+++|+++...+.+.++|..
T Consensus       139 ~~a~~a-g~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~  217 (401)
T 1x13_A          139 SMANIA-GYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAE  217 (401)
T ss_dssp             HHHHHH-HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCE
T ss_pred             HHHHHH-HHHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCE
Confidence            222111 112222222211100 0   00115889999999999999999999999999999999987666666677765


Q ss_pred             ecC---------------------------CHHhhcCcCCEEEEc--CCCChhhhccccHHHHhcCCCCCEEEEcC--CC
Q 021995          163 FEE---------------------------DLDTMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA--RG  211 (304)
Q Consensus       163 ~~~---------------------------~l~ell~~aDvVi~~--~p~~~~t~~~i~~~~l~~mk~g~ilVn~~--rg  211 (304)
                      .+.                           ++++++.++|+|+.+  +|.. .+..+++++.++.||+|+++||++  ||
T Consensus       218 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~G  296 (401)
T 1x13_A          218 FLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNG  296 (401)
T ss_dssp             ECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGT
T ss_pred             EEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCC
Confidence            432                           367888899999999  5532 355788899999999999999999  77


Q ss_pred             chhc
Q 021995          212 AIMD  215 (304)
Q Consensus       212 ~~vd  215 (304)
                      ..++
T Consensus       297 g~v~  300 (401)
T 1x13_A          297 GNCE  300 (401)
T ss_dssp             CSBT
T ss_pred             CCcC
Confidence            6543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.70  E-value=2.5e-17  Score=157.59  Aligned_cols=105  Identities=21%  Similarity=0.213  Sum_probs=92.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      +..+.|++|+|+|+|.||+.+|+++++||++|+++++++.....+...|+... ++++++++||+|+++.+    |.++|
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atg----t~~lI  316 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTG----NKDVI  316 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCS----SSSSB
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCC----Ccccc
Confidence            45799999999999999999999999999999999986644444555677654 89999999999998753    67899


Q ss_pred             cHHHHhcCCCCCEEEEcCCCch-hchHHHHH
Q 021995          192 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  221 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~  221 (304)
                      +++.|+.||+|++|||+|||++ +|.++|.+
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999998 99999974

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.65  E-value=3.5e-18  Score=163.61  Aligned_cols=215  Identities=16%  Similarity=0.169  Sum_probs=156.2

Q ss_pred             CCcEEEEEeeecccCCCCcccHHHHH-----hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccc-
Q 021995           34 GSKKIVGVFYKGNEYASMNPNFLAAA-----AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG-  107 (304)
Q Consensus        34 ~~lk~i~~~~~G~d~~~~~~d~~~~~-----~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~-  107 (304)
                      +.+++|..+++|+|+++    +-++.     ++++.+++.+|. ..+++++.+..++.+.|++..... ...+.|.... 
T Consensus        80 ~a~~~i~~v~~Glds~~----vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~-~~~~~~s~a~~  153 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMM----VGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETR-ISEGAVSIGSA  153 (404)
T ss_dssp             HHHHHHHHHHTTTTSSS----TTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSS-TTCSCCSHHHH
T ss_pred             hHhhhheeeccCCCCCc----CCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhh-hcCCCccHHHH
Confidence            45777888889998764    34444     778888888888 478899999999999998755432 2234453210 


Q ss_pred             -cccc---ccccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCCh-hHHHhcCcee--cCCHHhhcCcCCEEEE
Q 021995          108 -VAYR---AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVV  179 (304)
Q Consensus       108 -~~~~---~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~-~~~~~~g~~~--~~~l~ell~~aDvVi~  179 (304)
                       ....   ..++.|++|+|||+|.||+.+++.|+.+|+ +|+++||+..+. +.+.++|...  ..++.+++.++|+|+.
T Consensus       154 av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~  233 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVS  233 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEE
Confidence             0000   114799999999999999999999999999 899999976443 4455667643  2467788889999999


Q ss_pred             cCCCChhhhccccHHHHhc--CC----CCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCe
Q 021995          180 NTPLTEKTRGMFDKDRIAK--MK----KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  253 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~--mk----~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv  253 (304)
                      |+|.+   ..+++.+.++.  ||    ++.++||++                             +|.+.+++++.+|||
T Consensus       234 at~~~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v  281 (404)
T 1gpj_A          234 ATAAP---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDV  281 (404)
T ss_dssp             CCSSS---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTE
T ss_pred             ccCCC---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCe
Confidence            98754   45667777776  32    455666664                             365556789999999


Q ss_pred             EE--ccCCCcCCHHHHH----------HHHHHHHHHHHHHHcCCC
Q 021995          254 AM--TPHVSGTTIDAQL----------RYAAGVKDMLDRYFKGED  286 (304)
Q Consensus       254 ~l--TPHia~~t~e~~~----------~~~~~~~~~l~~~~~g~~  286 (304)
                      ++  +||+++.+.+.++          .+.....+++..|+.+.+
T Consensus       282 ~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          282 EVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99  9999998887654          555566677777876654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.64  E-value=3.9e-16  Score=149.06  Aligned_cols=140  Identities=14%  Similarity=0.203  Sum_probs=105.6

Q ss_pred             hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC
Q 021995           60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF  139 (304)
Q Consensus        60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~  139 (304)
                      +..++|.|+......+.-+-..+.--++...+       ++         ..+..+.|++|+|+|+|.||+.+|++|++|
T Consensus       179 ~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi-------~r---------at~~~L~GktV~ViG~G~IGk~vA~~Lra~  242 (435)
T 3gvp_A          179 KLCVPAMNVNDSVTKQKFDNLYCCRESILDGL-------KR---------TTDMMFGGKQVVVCGYGEVGKGCCAALKAM  242 (435)
T ss_dssp             CCCSCEEECTTCHHHHHHHTHHHHHHHHHHHH-------HH---------HHCCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEecchhhhhhhhhhhhhHHHHHHHH-------HH---------hhCceecCCEEEEEeeCHHHHHHHHHHHHC
Confidence            45699999887655554442222111111110       00         013479999999999999999999999999


Q ss_pred             CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch-hchHH
Q 021995          140 NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQA  218 (304)
Q Consensus       140 G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~-vd~~a  218 (304)
                      |++|+++|+++.....+...|... .+++++++++|+|++|    +.|.++|+++.|+.||+|++|||+|||++ +|.++
T Consensus       243 Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~  317 (435)
T 3gvp_A          243 GSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVAS  317 (435)
T ss_dssp             TCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGG
T ss_pred             CCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHH
Confidence            999999998764444555667655 4899999999999995    34678999999999999999999999998 77777


Q ss_pred             HH
Q 021995          219 VV  220 (304)
Q Consensus       219 L~  220 (304)
                      |.
T Consensus       318 L~  319 (435)
T 3gvp_A          318 LR  319 (435)
T ss_dssp             GC
T ss_pred             HH
Confidence            64

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.59  E-value=4.2e-15  Score=141.33  Aligned_cols=188  Identities=19%  Similarity=0.191  Sum_probs=124.2

Q ss_pred             cccccchhch-----hHHHhcCC-CcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhC
Q 021995           17 SGFLRSSSRF-----SRHYASSG-SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRN   90 (304)
Q Consensus        17 ~~~~~~~~~~-----~~~l~~~~-~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~   90 (304)
                      +.++...+++     .+.+..++ .+++++....+.|    +.+++++.++||++++.. .....+++..+. +|+..+.
T Consensus        69 diil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~----~~~~~~~~~~gi~~~~~e-~~~~~~~~~~l~-~l~~~a~  142 (384)
T 1l7d_A           69 DVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTN----RPVVEALTKRKITAYAME-LMPRISRAQSMD-ILSSQSN  142 (384)
T ss_dssp             SEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGC----HHHHHHHHHTTCEEEEGG-GCCCSGGGGGGC-HHHHHHH
T ss_pred             CEEEEecCcccccCCHHHHHhhccCCEEEEEecccCC----HHHHHHHHHCCCEEEEec-cccccccccccc-hhhHHHH
Confidence            4555555564     45566665 6889887777664    567999999999999842 111111111121 1112111


Q ss_pred             cchhhHHHHhCCcccc----cccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec--
Q 021995           91 FLPGHHQVISGEWNVA----GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--  164 (304)
Q Consensus        91 ~~~~~~~~~~~~w~~~----~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--  164 (304)
                      + ..+..+..+.|...    .......++.|++|+|+|+|.+|..+++.++.+|++|+++|+++...+.++++|....  
T Consensus       143 ~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i  221 (384)
T 1l7d_A          143 L-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITV  221 (384)
T ss_dssp             H-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC
T ss_pred             H-HHHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEee
Confidence            1 11112222222110    0000113689999999999999999999999999999999998877677777776543  


Q ss_pred             CC---------------------------HHhhcCcCCEEEEcC--CCChhhhccccHHHHhcCCCCCEEEEcC--CCc
Q 021995          165 ED---------------------------LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGA  212 (304)
Q Consensus       165 ~~---------------------------l~ell~~aDvVi~~~--p~~~~t~~~i~~~~l~~mk~g~ilVn~~--rg~  212 (304)
                      +.                           ++++++++|+|+.|+  |..+ +.++++++.++.||+|+++||++  ||.
T Consensus       222 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg  299 (384)
T 1l7d_A          222 DDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGG  299 (384)
T ss_dssp             -----------------------CCHHHHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             cccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCC
Confidence            11                           778889999999887  4432 45678899999999999999999  654

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.55  E-value=5.9e-15  Score=135.92  Aligned_cols=115  Identities=18%  Similarity=0.238  Sum_probs=103.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~  195 (304)
                      ++||+||+|.||..+|++|...|++|++|||++.+.+.+.+.|+...+++.|+++.||+|++|+|..+..+.++.  ...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            589999999999999999999999999999988777777788999899999999999999999999888877763  247


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      ++.+++|.++||++..++-+...+.+.+.+..+.  .+|
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lD  120 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLD  120 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence            7889999999999999999999999999998887  566

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.55  E-value=1e-14  Score=134.00  Aligned_cols=115  Identities=13%  Similarity=0.114  Sum_probs=99.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  197 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~  197 (304)
                      ++|||||+|.||..+|++|...|++|++|||++.+.+.+.+.|+...+++.|+++++|+|++|+|..+..+.++..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            58999999999999999999999999999999877777777888888999999999999999999888888888888999


Q ss_pred             cCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          198 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       198 ~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      .++++.++||++....-+...+.+.+.+..+.  .+|
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~ld  120 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVG  120 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eec
Confidence            99999999999999999999999999998887  555

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.50  E-value=1.9e-13  Score=126.51  Aligned_cols=165  Identities=12%  Similarity=0.022  Sum_probs=109.4

Q ss_pred             HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHh-hcCc
Q 021995           99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDT-MLPK  173 (304)
Q Consensus        99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~--~~~~~l~e-ll~~  173 (304)
                      ..+.|.....+. ..++..++|||||+|.||..+|+.|+..|+  +|++||+++...+.+.+.|+  ....++++ ++++
T Consensus        16 ~~~~~~~~~~~~-~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~   94 (314)
T 3ggo_A           16 PRGSHMKNIIKI-LKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS   94 (314)
T ss_dssp             --------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGC
T ss_pred             ccccCcCcCCch-hhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhcc
Confidence            445564433321 224456899999999999999999999999  99999998765666667776  44568888 8999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCC---CCCCCCCccCC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRYM  250 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~e---p~~~~~~l~~~  250 (304)
                      ||+|++|+|... +..++ ++..+.+++++++++++..+....+++.+.+...-+.+.  -++..|   |......|+..
T Consensus        95 aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~h--Pm~G~e~sG~~~A~~~Lf~g  170 (314)
T 3ggo_A           95 PDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGH--PIAGTEKSGVEYSLDNLYEG  170 (314)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEE--ECCCCCCCSGGGCCTTTTTT
T ss_pred             CCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecC--cccCCcccchhhhhhhhhcC
Confidence            999999999653 33444 567778999999999998776556677776654222211  223222   33344567777


Q ss_pred             CCeEEccCCCcCCHHHHHH
Q 021995          251 PNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       251 ~nv~lTPHia~~t~e~~~~  269 (304)
                      ..+++||+-+ .+.+..++
T Consensus       171 ~~~il~~~~~-~~~~~~~~  188 (314)
T 3ggo_A          171 KKVILTPTKK-TDKKRLKL  188 (314)
T ss_dssp             CEEEECCCTT-SCHHHHHH
T ss_pred             CEEEEEeCCC-CCHHHHHH
Confidence            8899999844 34444443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.47  E-value=1.6e-13  Score=125.66  Aligned_cols=111  Identities=14%  Similarity=0.190  Sum_probs=99.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      .++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+....+++++++ +|+|++|+|..+.++.++ ++.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            36899999999999999999999999999999988777777888888889999999 999999999877777766 6788


Q ss_pred             hcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.++++.++||+++......+.+.+.+.+..+.
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            889999999999999999999999999887665

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.46  E-value=6.2e-14  Score=129.10  Aligned_cols=119  Identities=14%  Similarity=0.089  Sum_probs=101.3

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++..++|||||+|.||..+|+.|...|++|++|||++.+.+.+.+.|.....++++++++||+|++++|....++.++..
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            45678999999999999999999999999999999876666666678887889999999999999999987777777643


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      +.+..+++|.++||+++....+...+.+.+.+..+.  .+|
T Consensus        86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vd  124 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVK  124 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEE
T ss_pred             cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence            345667899999999999999999999999887665  445

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.46  E-value=1.3e-13  Score=127.77  Aligned_cols=116  Identities=20%  Similarity=0.172  Sum_probs=99.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ....++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+....++++++++||+|++++|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            34567999999999999999999999999999999876556666668887889999999999999999977676666532


Q ss_pred             -HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          194 -DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 -~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       +.++.++++.++||++++.+.+.+.+.+.+.+..+.
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  144 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA  144 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence             567789999999999999999999999999887666

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.45  E-value=1.2e-13  Score=127.37  Aligned_cols=117  Identities=14%  Similarity=0.101  Sum_probs=100.8

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc-
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-  191 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i-  191 (304)
                      .....++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+....++++++++||+|++|+|....++.++ 
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~   96 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVF   96 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHh
Confidence            3456689999999999999999999999999999998877777777888888899999999999999999776666655 


Q ss_pred             -cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          192 -DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 -~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       ..+.++.++++.++||+++..+...+.+.+.+.+..+.
T Consensus        97 ~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           97 DKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             STTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence             24566789999999999999999999999999887665

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.45  E-value=2.5e-13  Score=125.44  Aligned_cols=129  Identities=12%  Similarity=0.135  Sum_probs=92.8

Q ss_pred             HHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC--CChhHHHhcCceecCCHHhhcC
Q 021995           96 HQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDPQLEKETGAKFEEDLDTMLP  172 (304)
Q Consensus        96 ~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~--~~~~~~~~~g~~~~~~l~ell~  172 (304)
                      +..+.+.|.+............++|||||+|.||..+|+.|...|+ +|++||+++  ...+...+.|+....+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~   82 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAG   82 (312)
T ss_dssp             ----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHH
T ss_pred             cccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHh
Confidence            3455666654321112223456799999999999999999999999 999999963  4445556678888889999999


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      +||+|++|+|....... + .+..+.++++.++||+++.......++.+.+.+.
T Consensus        83 ~aDvVi~~vp~~~~~~~-~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           83 ECDVIFSLVTAQAALEV-A-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             HCSEEEECSCTTTHHHH-H-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEecCchhHHHH-H-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence            99999999997765543 2 6777889999999999999999999999998876

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.44  E-value=1.2e-12  Score=118.55  Aligned_cols=141  Identities=11%  Similarity=0.063  Sum_probs=104.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCce--ecCCHHhhcC-cCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~--~~~~l~ell~-~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ++|||||+|.||..+++.|...|+  +|++||+++...+.+.+.|..  ...+++++++ ++|+|++|+|.. .+..++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHH-
Confidence            589999999999999999999898  999999976555555566763  3457888898 999999999954 344444 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCC---CCCCCCCccCCCCeEEccCCCcC
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~e---p~~~~~~l~~~~nv~lTPHia~~  262 (304)
                      .+..+.++++.++++++++.....+.+.+.+.++.+.+  .-++..|   |....++++...+++++||.++.
T Consensus        80 ~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~  150 (281)
T 2g5c_A           80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD  150 (281)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred             HHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEecCCCCC
Confidence            35667789999999999988777778888887642211  1223222   33344567777789999997754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.43  E-value=1.9e-13  Score=124.36  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--cHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~~~~  195 (304)
                      ++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+....+++++++++|+|++|+|....++.++  .++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            68999999999999999999999999999998877777777788888899999999999999999766666665  2566


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++.++++.++||+++....+...+.+.+.+..+.
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7889999999999999999999999999887665

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.42  E-value=3.1e-13  Score=127.29  Aligned_cols=121  Identities=14%  Similarity=0.183  Sum_probs=102.6

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcC---CEEEEcCCCChhhhccc
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC---DIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a---DvVi~~~p~~~~t~~~i  191 (304)
                      +.+++|||||+|.||..+|+.|...|++|.+|||++.+.+.+.+.|+....+++++++.+   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            567899999999999999999999999999999987666666666887778999999888   9999999977 666666


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                       .+.++.++++.++||++++...+...+.+.+.+..+......|+.
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence             577888999999999999999999999999999888754444443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.40  E-value=2.1e-13  Score=124.07  Aligned_cols=112  Identities=14%  Similarity=0.110  Sum_probs=97.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~  195 (304)
                      ++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+....++++++++||+|++|+|..+.++.++.  ++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            479999999999999999999999999999988777777777888888999999999999999997766666551  456


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++.++++.++||++++...+...+.+.+.+..+.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            6788999999999999999999999998886655

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.39  E-value=3.1e-13  Score=124.03  Aligned_cols=113  Identities=16%  Similarity=0.064  Sum_probs=96.3

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhhcCcCCEEEEcCCCChhhhcccc--H
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTMLPKCDIVVVNTPLTEKTRGMFD--K  193 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~  193 (304)
                      .++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|... ..++++++++||+|++++|..+..+.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            46899999999999999999999999999999876656666667766 67899999999999999997666666542  4


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.++.++++.++||+++........+.+.+.+..+.
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            566788999999999999999999999999887655

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.36  E-value=7.4e-12  Score=113.86  Aligned_cols=140  Identities=12%  Similarity=0.074  Sum_probs=102.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-------------------------CceecCCHHhhcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------------------GAKFEEDLDTMLP  172 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------------g~~~~~~l~ell~  172 (304)
                      ++|+|||.|.||..+|+.+...|++|++||+++...+...+.                         .+....++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999976443333221                         1345578889999


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  252 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~n  252 (304)
                      +||+|+.++|.+.+....+-++..+.+++++++++.+.+-  ...++.+++... ...+++..|.        |.+..+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l  153 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT  153 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCG-GGEEEEEECS--------STTTSCE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCC-cceEEEccCC--------CcccCce
Confidence            9999999999887676666677888899999999665553  456777777443 3445555442        3456677


Q ss_pred             eEEccCCCcCCHHHHHH
Q 021995          253 QAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       253 v~lTPHia~~t~e~~~~  269 (304)
                      +.++||-. .+.+..++
T Consensus       154 vevv~~~~-t~~~~~~~  169 (283)
T 4e12_A          154 AEVMGTTK-TDPEVYQQ  169 (283)
T ss_dssp             EEEEECTT-SCHHHHHH
T ss_pred             EEEEeCCC-CCHHHHHH
Confidence            88999843 34454443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.36  E-value=2.4e-12  Score=117.04  Aligned_cols=142  Identities=14%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             CCEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHhcCc--eecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~~g~--~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      -++|||||+|.||..+++.|...  |++|++||+++...+...+.|.  ....+++++++++|+|++++|.... ..++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~-~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKT-IDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHH-HHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHH-HHHH-
Confidence            36899999999999999999865  7899999997654444555665  3456788888999999999995433 4444 


Q ss_pred             HHHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee---cCCC---CCCCCCCCccCCCCeEEccCCCcC
Q 021995          193 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD---VWNP---QPAPKDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       193 ~~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD---V~~~---ep~~~~~~l~~~~nv~lTPHia~~  262 (304)
                      .+..+. ++++.+++++++......+.+.+.+.+..+.  .++   ++..   .|......++..+.++++||.++.
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence            456667 8999999999998877778888877752333  233   2111   344444567777779999987654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.35  E-value=4.7e-12  Score=118.76  Aligned_cols=108  Identities=21%  Similarity=0.259  Sum_probs=91.2

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~~i~  192 (304)
                      +|.|+||+|+|+|+||+.+|++|+++|++|+++|++....+...+++++.. ++++++. +||+++.|     .+.+.|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhcC
Confidence            699999999999999999999999999999999986432334455677665 6788887 89999854     4678999


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .+.++.|| ..+++|.+++++.++++ .++|+++.+.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 78999999999999777 5888888776

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.34  E-value=3.7e-12  Score=117.87  Aligned_cols=109  Identities=14%  Similarity=0.050  Sum_probs=90.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCC-------ChhHHHhcCceecC-CHHhhcCcCCEEEEcCCCChhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKM-------DPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~-------~~~~~~~~g~~~~~-~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      .++|||||+|.||..+|+.|...| ++|++||+++.       ..+...+.|+  .. ++++++++||+|++|+|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            368999999999999999999999 99999999752       1222334465  45 7889999999999999977665


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ..+  .+..+.++++.++||+++........+.+.+.+..+.
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~  141 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS  141 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            544  6778889999999999999999999999999887665

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.29  E-value=2.7e-12  Score=120.04  Aligned_cols=140  Identities=14%  Similarity=0.076  Sum_probs=97.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc----CCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK----CDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~----aDvVi~~~p~~~~t~~~i~  192 (304)
                      -++|||||+|.||..+|+.|+..|++|++||+++...+.+.+.|+....++++++++    +|+|++|+|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            357999999999999999999999999999998766666777888766788887764    6999999994 3555555 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE-eecCCCC---CCCCCCCccCCCCeEEccCCCc
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS-GDVWNPQ---PAPKDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~-lDV~~~e---p~~~~~~l~~~~nv~lTPHia~  261 (304)
                      ++. ..++++++++|++..+....+++.+.+.  ...... --++-.|   |......|+....+++||+-..
T Consensus        86 ~~l-~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~  155 (341)
T 3ktd_A           86 DAV-HTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLF  155 (341)
T ss_dssp             HHH-HHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGT
T ss_pred             HHH-HccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCC
Confidence            333 3458999999998766544444444332  122111 1122222   2223456777778999997543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.26  E-value=1.2e-11  Score=120.61  Aligned_cols=119  Identities=11%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC-----ceecCCHHhhcC---cCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-----AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g-----~~~~~~l~ell~---~aDvVi~~~p~~~~t~  188 (304)
                      .++|||||+|.||..+|+.|...|++|.+|||++.+.+...+.+     +....+++++++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            35899999999999999999999999999999875555444432     233568888876   5999999999887777


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      .++ .+..+.|++|.++||++++...+...+.+.+.+..+......|.
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVs  130 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVS  130 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCcc
Confidence            776 67888999999999999999999999999999887764443443

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.26  E-value=4.2e-12  Score=115.65  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=93.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~  195 (304)
                      ++|+|||+|.||..+++.|...|++|.+||+++...+...+.|+....+++++++++|+|++++|....++.++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            489999999999999999998999999999976555555556777777899999999999999997666666652  355


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .+.++++.++|+++.+...+.+.|.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6778999999999999988888999988875444

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.26  E-value=1.1e-11  Score=120.89  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=95.1

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----CceecCCHHhhcCc---CCEEEEcCCCChhh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPK---CDIVVVNTPLTEKT  187 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~~~~~l~ell~~---aDvVi~~~p~~~~t  187 (304)
                      ++.++|||||+|.||+.+|+.|...|++|.+|||++...+...+.    |+....+++++++.   +|+|++++|..+.+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            566789999999999999999999999999999986544444433    67777789998876   99999999987777


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.++ ++..+.+++|.++||++.|...+...+.+.+.+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            7777 4677889999999999999999988999989876555

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.24  E-value=1.2e-11  Score=116.78  Aligned_cols=181  Identities=14%  Similarity=0.099  Sum_probs=117.7

Q ss_pred             ee-ccccccchhchhHHHhcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEc---CCCC-------hhHHHHHHH
Q 021995           14 FA-SSGFLRSSSRFSRHYASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEV---TGSN-------VVSVAEDEL   81 (304)
Q Consensus        14 ~~-~~~~~~~~~~~~~~l~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~---~g~~-------~~~vAE~al   81 (304)
                      .| -+-++.-..+..+++... +...+++.+....+    ..-++++.++||+...-   |...       -.+++|.+=
T Consensus        82 ~~~adiIlkVk~p~~~e~~~l~~g~~l~~~lh~~~~----~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAG  157 (381)
T 3p2y_A           82 PWPADVVVKVNPPTSDEISQLKPGSVLIGFLAPRTQ----PELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAG  157 (381)
T ss_dssp             CTTSSEEECSSCCCHHHHTTSCTTCEEEECCCTTTC----HHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHH
T ss_pred             eecCCEEEEeCCCChhHHhhccCCCEEEEEeccccC----HHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHH
Confidence            45 334455555566777554 44555554443332    22246788999998643   2211       134455543


Q ss_pred             HHHH-HHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC
Q 021995           82 MRIL-ILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG  160 (304)
Q Consensus        82 ~~~L-~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g  160 (304)
                      .+.. ..+..+..         ... ........+.+++|+|||+|.||..+++.++++|++|+++|+++...+.+.+.|
T Consensus       158 y~Av~~aa~~l~~---------~~~-~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lG  227 (381)
T 3p2y_A          158 YKAVLLGASLSTR---------FVP-MLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVG  227 (381)
T ss_dssp             HHHHHHHHHHCSS---------CSS-CEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTT
T ss_pred             HHHHHHHHHHhhh---------hhh-hhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence            2221 11121111         100 000112357899999999999999999999999999999999887666777776


Q ss_pred             ceec-------------------------CCHHhhcCcCCEEEEcC--CCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          161 AKFE-------------------------EDLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       161 ~~~~-------------------------~~l~ell~~aDvVi~~~--p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .++.                         .++++.++++|+|+.++  |.. .+..+++++.++.||+|+++||++
T Consensus       228 a~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          228 AQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             CEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             CeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEe
Confidence            6543                         24678999999999875  542 356789999999999999999998

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.24  E-value=1.1e-11  Score=113.04  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=92.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~  195 (304)
                      ++|+|||+|.||+.+++.|...|++|++||+++...+...+.|+....+++++++++|+|++++|....++.++.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            589999999999999999998999999999976544444455777777899999999999999997766666664  356


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .+.++++.++|++++|...+.+.|.+.+.+..+.
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6778999999999999877888898888775443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.23  E-value=1e-11  Score=112.70  Aligned_cols=111  Identities=15%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH--HH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~--~~  195 (304)
                      ++|+|||+|.||+.+++.|...|++|++|| ++...+...+.|+....+++++++++|+|++++|....+..++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 776666666667776778999999999999999976656555532  44


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .+.++++.++|+++.+...+.+.+.+.+.+..+.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5678999999999999888888999998874433

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.23  E-value=1.8e-11  Score=116.46  Aligned_cols=181  Identities=17%  Similarity=0.177  Sum_probs=117.0

Q ss_pred             cccccchhchhHHHhcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEc---CCCC-------hhHHHHHHHHHH-
Q 021995           17 SGFLRSSSRFSRHYASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEV---TGSN-------VVSVAEDELMRI-   84 (304)
Q Consensus        17 ~~~~~~~~~~~~~l~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~---~g~~-------~~~vAE~al~~~-   84 (304)
                      +-++.-..+..+++... +.-.+++.+....+    ..-++.+.++||+...-   |...       -.+++|.+=.+. 
T Consensus        92 diIlkVk~p~~~e~~~l~~g~~l~~~lh~~~~----~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~Av  167 (405)
T 4dio_A           92 DVILKVRRPSAQEISGYRSGAVVIAIMDPYGN----EEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQAV  167 (405)
T ss_dssp             SEEEEEECCCTTTGGGSCTTCEEEEECCCTTC----HHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCChhHHhhcCCCcEEEEEeccccC----HHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHHH
Confidence            34444455555666544 45556665544432    22246788999998643   3211       134455443221 


Q ss_pred             HHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec
Q 021995           85 LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE  164 (304)
Q Consensus        85 L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~  164 (304)
                      +..+..+...        +.  .....-..+.+.+|+|+|+|.+|..+++.++++|++|+++|+++...+.+.++|..+.
T Consensus       168 ~~aa~~l~~~--------~~--~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~  237 (405)
T 4dio_A          168 IDAAYEYDRA--------LP--MMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFI  237 (405)
T ss_dssp             HHHHHHCSSC--------SS--CEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEEC
T ss_pred             HHHHHHhHhh--------hc--hhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCcee
Confidence            1112211110        11  0001112578999999999999999999999999999999998866666666665421


Q ss_pred             -----------------------------CCHHhhcCcCCEEEEcC--CCChhhhccccHHHHhcCCCCCEEEEcC--CC
Q 021995          165 -----------------------------EDLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RG  211 (304)
Q Consensus       165 -----------------------------~~l~ell~~aDvVi~~~--p~~~~t~~~i~~~~l~~mk~g~ilVn~~--rg  211 (304)
                                                   .+++++++++|+|+.++  |.. ....+++++.++.||+|+++||++  +|
T Consensus       238 ~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~G  316 (405)
T 4dio_A          238 AVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERG  316 (405)
T ss_dssp             CCCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGT
T ss_pred             ecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCC
Confidence                                         15678899999999875  533 356789999999999999999998  44


Q ss_pred             c
Q 021995          212 A  212 (304)
Q Consensus       212 ~  212 (304)
                      .
T Consensus       317 G  317 (405)
T 4dio_A          317 G  317 (405)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.22  E-value=1.2e-10  Score=105.01  Aligned_cols=143  Identities=15%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      ++|+|||+|.||+.+++.|...|++|++||+++...+...+.|..  ...+++++ +++|+|++++|.. .+..++ .+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~-~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQ-LILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHH-HHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHH-HHHHHH-HHH
Confidence            479999999999999999999999999999976555555555652  35678888 9999999999943 344444 456


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCC---CCCCCCCCccCCCCeEEccCCCcCCHHHH
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP---QPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  267 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~---ep~~~~~~l~~~~nv~lTPHia~~t~e~~  267 (304)
                      .+.++++.++|+++..+....+.+.+.+.  ++.+. .-++..   .|....+.++..+.++++|+-++ +.+..
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~-~~~~~  148 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQL  148 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHH
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCC-CHHHH
Confidence            67789999999998777666666655543  22221 122211   23333334556667889997543 33433

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.22  E-value=1.2e-12  Score=122.36  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .+.+++|||||+|.||+.+|+.|+..|++|+++++++.. .+.+.+.|+... ++++++++||+|++++|.... ..++.
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~-~~v~~   90 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLYK   90 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHH-HHHHH
Confidence            578899999999999999999999999999999997644 455566777665 888999999999999996533 44544


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCC---ccC---CCCeEEccCCCc
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP---WRY---MPNQAMTPHVSG  261 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~---l~~---~~nv~lTPHia~  261 (304)
                      ++..+.+++++++++++ |  ++.  ....+.    ....+||+...|..+.+.   ++.   -.++++|||...
T Consensus        91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~  156 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDA  156 (338)
T ss_dssp             HHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECS
T ss_pred             HHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCC
Confidence            35667799999999884 3  222  111111    112234544445433332   333   456889998643

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.22  E-value=2.9e-11  Score=118.45  Aligned_cols=112  Identities=11%  Similarity=0.152  Sum_probs=95.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhcCc---CCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPK---CDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~~~~~l~ell~~---aDvVi~~~p~~~~t~  188 (304)
                      ..+|||||+|.||..+|+.|...|++|.+|||++.+.+...+     .|+....+++++++.   +|+|++++|..+.++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            358999999999999999999999999999998765555544     466667789888776   999999999877777


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .++ ++..+.+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            777 5677889999999999999999999999988876554

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.21  E-value=1.2e-11  Score=112.35  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=88.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH--HH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~--~~  195 (304)
                      ++|+|||+|.||+.+++.|...|++|++|||++...+...+.|+....+++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            3799999999999999999999999999999875555555667777778999999999999999977666665532  24


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ++.++++.++|+++..+..+...+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            5578999999998888877777777777653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.20  E-value=3.9e-11  Score=116.48  Aligned_cols=95  Identities=20%  Similarity=0.271  Sum_probs=81.2

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ..+.|++++|+|+|.||+.+|+.|+++|++|+++|+++.....+...+... .++++++..+|+++.+..    +.++++
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG----~~~vl~  335 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTG----NKDIIM  335 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSS----CSCSBC
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCC----Chhhhh
Confidence            468999999999999999999999999999999999765445555566654 488999999999997654    457888


Q ss_pred             HHHHhcCCCCCEEEEcCCCc
Q 021995          193 KDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~  212 (304)
                      .+.++.||++++++|++++.
T Consensus       336 ~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          336 LDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             HHHHTTSCTTEEEEESSSTT
T ss_pred             HHHHHhcCCCeEEEEcCCCC
Confidence            89999999999999999983

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.20  E-value=2.3e-11  Score=110.00  Aligned_cols=108  Identities=12%  Similarity=0.141  Sum_probs=88.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  197 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~  197 (304)
                      ++|+|||+|.||..+++.|.. |++|.+|||++...+...+.|+.... ++++++++|+|++|+|....+..++ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 99999999987554544444655554 7788889999999999766566655 55667


Q ss_pred             cCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          198 KMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       198 ~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      .++++.++|+++.+...+.+.+.+.+.+..+
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  109 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGV  109 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            7899999999999998888999999887543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.19  E-value=3.3e-11  Score=110.83  Aligned_cols=112  Identities=14%  Similarity=0.200  Sum_probs=92.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH--HH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~--~~  195 (304)
                      ++|+|||+|.||..+++.|...|++|.+||+++...+...+.|.....+++++++++|+|++++|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999999999999876666566667777778989999999999999976666555432  23


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++.++++.++|+++++.....+.+.+.+......
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            4678999999999998888888888888664443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.17  E-value=9.6e-11  Score=107.30  Aligned_cols=135  Identities=14%  Similarity=0.130  Sum_probs=90.0

Q ss_pred             hHHHHhCCcccccccccccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc
Q 021995           95 HHQVISGEWNVAGVAYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK  173 (304)
Q Consensus        95 ~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~  173 (304)
                      +..+++..|....       ...++|+||| +|.||..+|+.|+..|++|.++|+++.             .++++.+++
T Consensus         6 ~~~~~~~~~~~~~-------~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------------~~~~~~~~~   65 (298)
T 2pv7_A            6 YANENQFGFKTIN-------SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILAN   65 (298)
T ss_dssp             -------CCCCSC-------TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTT
T ss_pred             HhhhhccCccccC-------CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------------cCHHHHhcC
Confidence            3455566785321       1356899999 999999999999999999999998642             156778899


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPN  252 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~n  252 (304)
                      ||+|++|+|... +..++ ++..+.++++++++|+++.+....+++.+.+.   ..     +....|.. +..+++....
T Consensus        66 aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~---~~-----~v~~hP~~g~~~~~~~g~~  135 (298)
T 2pv7_A           66 ADVVIVSVPINL-TLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVHT---GA-----VLGLHPMFGADIASMAKQV  135 (298)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS---SE-----EEEEEECSCTTCSCCTTCE
T ss_pred             CCEEEEeCCHHH-HHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC---CC-----EEeeCCCCCCCchhhcCCe
Confidence            999999999654 55555 45667789999999998876654555554431   22     22222321 2234555567


Q ss_pred             eEEccCC
Q 021995          253 QAMTPHV  259 (304)
Q Consensus       253 v~lTPHi  259 (304)
                      +++|||-
T Consensus       136 ~~l~~~~  142 (298)
T 2pv7_A          136 VVRCDGR  142 (298)
T ss_dssp             EEEEEEE
T ss_pred             EEEecCC
Confidence            8999975

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.16  E-value=1.6e-11  Score=109.40  Aligned_cols=98  Identities=13%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC--------------hhH-HHhcCceecCCHHhhcCcCC
Q 021995          111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD--------------PQL-EKETGAKFEEDLDTMLPKCD  175 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~--------------~~~-~~~~g~~~~~~l~ell~~aD  175 (304)
                      ...++.+++|||||+|.||..+|+.|...|++|++|||++..              .+. ....+.....++++++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            345899999999999999999999999999999999997543              111 12234444568889999999


Q ss_pred             EEEEcCCCChhhhccccHHH-HhcCCCCCEEEEcCCC
Q 021995          176 IVVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNARG  211 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~-l~~mk~g~ilVn~~rg  211 (304)
                      +|++++|...... .+ .+. ...+ ++.++||++-|
T Consensus        93 vVilavp~~~~~~-~~-~~i~~~~l-~g~ivi~~s~~  126 (245)
T 3dtt_A           93 LVVNATEGASSIA-AL-TAAGAENL-AGKILVDIANP  126 (245)
T ss_dssp             EEEECSCGGGHHH-HH-HHHCHHHH-TTSEEEECCCC
T ss_pred             EEEEccCcHHHHH-HH-HHhhhhhc-CCCEEEECCCC
Confidence            9999999764432 22 222 2334 89999999943

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.15  E-value=6e-11  Score=115.62  Aligned_cols=112  Identities=13%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----CceecCCHHhhcCc---CCEEEEcCCCChhhhcc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~~~~~l~ell~~---aDvVi~~~p~~~~t~~~  190 (304)
                      ++|||||+|.||+.+|+.|...|++|.+|||++...+...+.    ++....+++++++.   +|+|++++|....+..+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            579999999999999999999999999999976544444333    66667789888765   99999999987777777


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  230 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g  230 (304)
                      + ++..+.+++|.++|+++.+...+...+.+.+.+..+..
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~  124 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF  124 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeE
Confidence            6 46777899999999999999888888988887755553

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.14  E-value=1e-10  Score=114.25  Aligned_cols=112  Identities=12%  Similarity=0.116  Sum_probs=93.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhc---CcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTML---PKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~~~~~l~ell---~~aDvVi~~~p~~~~t~~  189 (304)
                      ++|||||+|.||+.+|..|...|++|.+|||++.+.+...+     .++....++++++   +++|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            47999999999999999999999999999998755554444     5666677898886   589999999998777777


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  230 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g  230 (304)
                      ++ .+..+.+++|.++|+++.|...+...+.+.+.+..+..
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~  122 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF  122 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence            76 46777899999999999999888888888887755543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.11  E-value=1.4e-10  Score=113.22  Aligned_cols=112  Identities=14%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cC-------ceecCCHHhhcC---cCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TG-------AKFEEDLDTMLP---KCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g-------~~~~~~l~ell~---~aDvVi~~~p~~~~  186 (304)
                      ++|||||+|.||+.+|+.|...|++|.+|||++...+...+ .|       +....+++++++   .+|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            37999999999999999999999999999997644443333 25       556678888876   49999999998777


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  230 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g  230 (304)
                      ++.++ ++..+.+++|.++|+++.|...+...+.+.+.+..+..
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~  124 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRF  124 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeE
Confidence            77776 46777899999999999999888888999898765553

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.08  E-value=1e-10  Score=104.64  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=80.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCC--CCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~--~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      ++|||||+|.||..+++.|...|++|++||+.  +...+...+.|+.  .+++++++++|+|++++|.......+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            47999999999999999999899999999873  2222333345665  57888889999999999976555544  466


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      .+.+++  ++||++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            677776  99999988887888888888664

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.06  E-value=1e-10  Score=113.04  Aligned_cols=98  Identities=16%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             ccccCC-CEEEEEeeChhhHHHHHHhccC------CCeEEEEcCC-CCChhHHHhcCcee----cCCHHhhcCcCCEEEE
Q 021995          112 AYDLEG-KTVGTVGCGRIGKLLLQRLKPF------NCNLLYHDRV-KMDPQLEKETGAKF----EEDLDTMLPKCDIVVV  179 (304)
Q Consensus       112 ~~~L~g-~~vgIIG~G~IG~~lA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~l~ell~~aDvVi~  179 (304)
                      ...|.| ++|||||+|+||.++|+.|+..      |++|++.++. ....+.+.+.|+..    ..++.+++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            457899 9999999999999999999987      9998766554 44556667778764    2578999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ++|..... .++. +.++.||+|++| -.+.|-
T Consensus       128 aVP~~~~~-eVl~-eI~p~LK~GaIL-s~AaGf  157 (525)
T 3fr7_A          128 LISDAAQA-DNYE-KIFSHMKPNSIL-GLSHGF  157 (525)
T ss_dssp             CSCHHHHH-HHHH-HHHHHSCTTCEE-EESSSH
T ss_pred             CCChHHHH-HHHH-HHHHhcCCCCeE-EEeCCC
Confidence            99976554 4554 788999999995 566664

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.63  E-value=1.7e-11  Score=106.23  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      +.+++|+|||+|.||+.+++.|...|++|++|+|++. .+.....++... +++++++++|+|++++|.. .+..++  +
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--~   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--E   91 (201)
Confidence            6788999999999999999999999999999999765 333333455544 7888899999999999964 455655  2


Q ss_pred             HHhcCCCCCEEEEcCCCchh
Q 021995          195 RIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~v  214 (304)
                       +..++++.++||+++|-..
T Consensus        92 -l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 -LADSLKGRVLIDVSNNQKM  110 (201)
Confidence             4456789999999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.05  E-value=1.9e-10  Score=103.09  Aligned_cols=101  Identities=15%  Similarity=0.234  Sum_probs=79.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      ++.+++|||||+|.||+.+++.|...|++ |.+|||++...+...+ .|+....+++++++++|+|++++|... ...++
T Consensus         7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~-~~~v~   85 (266)
T 3d1l_A            7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA-FAELL   85 (266)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHH-HHHHH
T ss_pred             CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHH-HHHHH
Confidence            45667999999999999999999988998 8999997644443333 477777789999999999999999653 34444


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhch
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDT  216 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~  216 (304)
                       ++..+.++++.++|+++.|...+.
T Consensus        86 -~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           86 -QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             -HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             -HHHHhhcCCCcEEEECCCCCchHH
Confidence             455667889999999999877543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.04  E-value=7.9e-10  Score=101.22  Aligned_cols=137  Identities=13%  Similarity=0.165  Sum_probs=93.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-------CceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------GAKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      +.|+|||||+|.||..+|+.+. .|++|++||+++...+.+.+.       ++....++++ +++||+|+.++|...+.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk   88 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTK   88 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHH
Confidence            5689999999999999999999 999999999987555555444       5655667876 889999999999988776


Q ss_pred             ccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHH
Q 021995          189 GMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  267 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~  267 (304)
                      ..+-.+ +..+ ++++++ |+|.-++   ..+.+.+. ......++--|.  |.      ...+-+.++|+-.+ +.+..
T Consensus        89 ~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv------~~~~lveiv~g~~t-~~~~~  153 (293)
T 1zej_A           89 VEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP------HVMPLVEIVISRFT-DSKTV  153 (293)
T ss_dssp             HHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST------TTCCEEEEEECTTC-CHHHH
T ss_pred             HHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc------ccCCEEEEECCCCC-CHHHH
Confidence            665444 5666 898885 7776544   34444332 223344555443  32      23455667775433 34444


Q ss_pred             HH
Q 021995          268 LR  269 (304)
Q Consensus       268 ~~  269 (304)
                      ++
T Consensus       154 ~~  155 (293)
T 1zej_A          154 AF  155 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.02  E-value=3e-10  Score=110.40  Aligned_cols=136  Identities=12%  Similarity=0.175  Sum_probs=94.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCChhHHH---------------h----cCceecCCHHhhcCcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK---------------E----TGAKFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~---------------~----~g~~~~~~l~ell~~aDv  176 (304)
                      ++|+|||+|.||..+|..|...  |++|++||+++.+.+...               .    .+.....++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999877  899999999753322211               1    244555688888999999


Q ss_pred             EEEcCCCChhhhcc-------------ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee---cCCCCC
Q 021995          177 VVVNTPLTEKTRGM-------------FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD---VWNPQP  240 (304)
Q Consensus       177 Vi~~~p~~~~t~~~-------------i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD---V~~~ep  240 (304)
                      |++|+|......+.             ..++..+.|+++.++|+.++.++-..+.+.+.+.+....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            99999854433221             123456678999999999998887788888888875422  123   345555


Q ss_pred             CCCCCC---ccCCCCeEE
Q 021995          241 APKDHP---WRYMPNQAM  255 (304)
Q Consensus       241 ~~~~~~---l~~~~nv~l  255 (304)
                      ..+...   +...+++++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            443332   344555654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.00  E-value=8.8e-10  Score=98.98  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCCh--hhhcc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE--KTRGM  190 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~--~t~~~  190 (304)
                      ++.| +++|||+|.||+.+++.|...|++|.++||+..+. +.++..+.. ..+++++ +++|+|++|+|...  .+...
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~  190 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASP  190 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCS
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCC
Confidence            5889 99999999999999999999999999999975332 233344555 4578888 99999999999763  22234


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      +.   .+.+++|.+++|++.++. +. .|.+++++..+
T Consensus       191 l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          191 LP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGL  223 (263)
T ss_dssp             SC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             CC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence            43   466899999999998743 44 47777666444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.98  E-value=9.2e-10  Score=89.69  Aligned_cols=89  Identities=12%  Similarity=0.228  Sum_probs=70.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      +++|+|||.|.||+.+++.|..+|++|.+++|++...+ .+++++..  ..++++++++++|+|+.++|...   .++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~---~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKT---PIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSS---CSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCC---cEeeH
Confidence            88999999999999999999999999999999764433 34455543  45788999999999999999652   34443


Q ss_pred             HHHhcCCCCCEEEEcCCC
Q 021995          194 DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg  211 (304)
                         ..+++|.+++|++..
T Consensus        98 ---~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNP  112 (144)
T ss_dssp             ---GGCCTTCEEEECCSS
T ss_pred             ---HHcCCCCEEEEccCC
Confidence               457889999999754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.98  E-value=4.4e-09  Score=101.80  Aligned_cols=180  Identities=16%  Similarity=0.164  Sum_probs=111.2

Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccccc---ccccccCCCEEEEEeeChhhHHHHHHhccCCCeEE
Q 021995           68 VTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVA---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL  144 (304)
Q Consensus        68 ~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~---~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~  144 (304)
                      ..|.|--.|.|.+.++++..-|         ..+.|......   .....-.=++|+|||.|.||..+|..+...|++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~---------~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~   81 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEAHS---------LAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETF   81 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHTTC---------CTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             ccccchhhhhHHHHHHHHhHHH---------hhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            3455556667777777777332         23456543110   01111223799999999999999999999999999


Q ss_pred             EEcCCCCChh--------HHHhcC-------------ceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995          145 YHDRVKMDPQ--------LEKETG-------------AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  203 (304)
Q Consensus       145 ~~dr~~~~~~--------~~~~~g-------------~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~  203 (304)
                      +||+++....        ...+.|             +....+++ .+++||+|+.++|.+.+.+..+-+++.+.+++++
T Consensus        82 l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~a  160 (460)
T 3k6j_A           82 LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTC  160 (460)
T ss_dssp             EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTC
T ss_pred             EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCC
Confidence            9999764110        111222             23456775 6899999999999877766555567778899999


Q ss_pred             EEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          204 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       204 ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      +|+..+.+  +....+.+.+.. .-..+++.-|.  |.+      ..+-+.++|+-. .+.+..++
T Consensus       161 IlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~------~m~LvEIv~g~~-Ts~e~~~~  214 (460)
T 3k6j_A          161 IFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN------VIRLVEIIYGSH-TSSQAIAT  214 (460)
T ss_dssp             EEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT------TCCEEEEECCSS-CCHHHHHH
T ss_pred             EEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh------hCCEEEEEeCCC-CCHHHHHH
Confidence            99754444  333455555432 33445666554  332      234466776533 23444443

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.97  E-value=8.1e-10  Score=104.03  Aligned_cols=108  Identities=22%  Similarity=0.277  Sum_probs=84.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~~i  191 (304)
                      +|.|++|+|+|+|+||+.+|++|..+|++|+++|++....+ .+++++.+.. +.++++. +||+++.|.     +.+++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccc-----hHHHh
Confidence            69999999999999999999999999999999998653322 3344576655 6667766 899999875     45688


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.+.++.|+ ..++++.+++++.+++ ..+.|.++.+.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            888888884 5788999999887755 55667766654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.94  E-value=1.3e-09  Score=98.60  Aligned_cols=106  Identities=14%  Similarity=0.255  Sum_probs=78.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChh--hhcc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK--TRGM  190 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~--t~~~  190 (304)
                      ++.|++++|||.|.+|+.+++.|...|++|+++||+..+.+ .....++....+++++++++|+|++++|....  +...
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~  205 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEI  205 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCS
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCC
Confidence            57889999999999999999999999999999999753322 22234555555788899999999999997642  2233


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ++   ++.++++.+++|++.    ....+.+..++.
T Consensus       206 i~---~~~l~~g~~viDv~~----~~t~ll~~a~~~  234 (275)
T 2hk9_A          206 FN---YDLIKKDHVVVDIIY----KETKLLKKAKEK  234 (275)
T ss_dssp             SC---GGGCCTTSEEEESSS----SCCHHHHHHHHT
T ss_pred             CC---HHHcCCCCEEEEcCC----ChHHHHHHHHHC
Confidence            43   456899999999987    233455544443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.93  E-value=6.2e-10  Score=100.98  Aligned_cols=94  Identities=18%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      ++|+|||+ |.||..+++.|...|++|++|||++...+...+.|+... ++.+.++++|+|++++|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 999999999999999999999997654444455565543 67788899999999999543 44444 4566


Q ss_pred             hcCCCCCEEEEcCCCchh
Q 021995          197 AKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~v  214 (304)
                      +.+++++++|+++.|..+
T Consensus        89 ~~l~~~~ivv~~s~~~~~  106 (286)
T 3c24_A           89 PRVRPGTIVLILDAAAPY  106 (286)
T ss_dssp             GGSCTTCEEEESCSHHHH
T ss_pred             HhCCCCCEEEECCCCchh
Confidence            678999999999888743

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.92  E-value=1.7e-09  Score=100.08  Aligned_cols=107  Identities=12%  Similarity=0.200  Sum_probs=82.3

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCC--ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM--DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~--~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      +..++|||||+|.||..+++.|...|    ++|++|||++.  ..+...+.|+....+..+.++++|+|++++| .....
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            44568999999999999999999888    78999999764  4445556688777788899999999999999 34555


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      .++ .+....++++.++|+++.|-.  .+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            544 355567889999999987643  3456666654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.92  E-value=8.4e-10  Score=96.30  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=72.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+++|+|||+|.||+.+++.|...|++|.+++|+....+...+.|+... +++++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            4578999999999999999999999999999997543333333466554 788899999999999994 34445542   


Q ss_pred             HhcCCCCCEEEEcCCCchhc
Q 021995          196 IAKMKKGVLIVNNARGAIMD  215 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd  215 (304)
                      +..+.++.++|++++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333799999999998654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.92  E-value=2.7e-09  Score=95.07  Aligned_cols=101  Identities=12%  Similarity=0.227  Sum_probs=77.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      ++|||||+|.||+.+++.|...|++|.+|||++...+... .+|+....+++++++++|+|++++| ....     .+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence            5899999999999999999999999999999764443333 3477767789999999999999999 3332     4556


Q ss_pred             hcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          197 AKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ..++++.++|++..|-..  +.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~~--~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGISL--QRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCCH--HHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCCH--HHHHHhcCCC
Confidence            667789999999766543  4566666543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.90  E-value=1.1e-09  Score=97.20  Aligned_cols=104  Identities=17%  Similarity=0.303  Sum_probs=78.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC----eEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~----~V~~~dr~~~~~~~~~-~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ++|||||+|.||+.+++.|...|+    +|.+|||++.+.+... +.|+....+++++++++|+|++++|.. ....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~-~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPD-LYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTT-THHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHH-HHHHHH-
Confidence            589999999999999999999998    9999999865544443 468887789999999999999999743 334444 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      ++..+.++++.++|.+..|--  .+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi~--~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGKS--IESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCSC--HHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCCC--HHHHHHHhCC
Confidence            455566889999997766543  4456666644

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.88  E-value=3.1e-09  Score=96.48  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC---eEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~---~V~~~dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++|||||+|+||..+++.|...|+   +|++|||++...+...+ +|+....+..++++++|+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4689999999999999999998898   89999998765554444 4887777899999999999999984 3333443 


Q ss_pred             HHHHhc-CCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          193 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       193 ~~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      ++..+. ++++.++|++.-|-.  .+.|.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGVT--TPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC
Confidence            344455 788889998877654  4667777765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.87  E-value=1.5e-08  Score=92.59  Aligned_cols=104  Identities=15%  Similarity=0.120  Sum_probs=74.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hc------------------CceecCCHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET------------------GAKFEEDLD  168 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~------------------g~~~~~~l~  168 (304)
                      ++|+|||.|.||..+|..|...|++|++||+++...+...           +.                  .+....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999988999999999754332211           11                  233456888


Q ss_pred             hhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       169 ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      +.+++||+|++++|...+....+-++..+.++++++++..+.+-.  ...+.+.+
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~--~~~l~~~~  148 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ--ITSIANAT  148 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC--HHHHHTTS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC--HHHHHHhc
Confidence            889999999999997655444343555567889999986555533  34555444

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.87  E-value=3.4e-09  Score=92.06  Aligned_cols=80  Identities=14%  Similarity=0.243  Sum_probs=62.5

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++.+++|+|||+|.||..+|+.|...|++|++|||++.                  .+++||+|++++| .+.+..++.
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~   75 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAK   75 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHH
Confidence            468899999999999999999999999999999998642                  4678999999999 555555543


Q ss_pred             HHHHhcCCCCCEEEEcCCCch
Q 021995          193 KDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~  213 (304)
                       +..+.++ ++++|++++|-.
T Consensus        76 -~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           76 -QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             -HTHHHHT-TSEEEECCCCBC
T ss_pred             -HHHHhcC-CCEEEEECCCCC
Confidence             4445677 999999999765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.87  E-value=5.3e-09  Score=100.52  Aligned_cols=116  Identities=12%  Similarity=0.122  Sum_probs=85.6

Q ss_pred             cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh------------------cCceecCCHHhhcC
Q 021995          111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------TGAKFEEDLDTMLP  172 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~------------------~g~~~~~~l~ell~  172 (304)
                      .+++..-++|+|||+|.||..+|..|.. |++|++||+++...+...+                  .+.....++++.++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            3456777899999999999999999988 9999999997643332222                  13455678889999


Q ss_pred             cCCEEEEcCCCChhh-------hcc--ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          173 KCDIVVVNTPLTEKT-------RGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t-------~~~--i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      +||+|++++|...+.       ..+  .-+...+ +++|+++|+.|.-++-..+.+.+.+.+..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            999999999965311       111  1245566 999999999999888888889888877544

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.84  E-value=4.8e-09  Score=93.53  Aligned_cols=100  Identities=12%  Similarity=0.179  Sum_probs=74.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      ++|+|||+|.||..+++.|...| ++|.+|||++...+...+ +|+....++++++ ++|+|++++| .....     +.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~-----~v   73 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDME-----AA   73 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHH-----HH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHH-----HH
Confidence            47999999999999999998889 999999997644444433 4777666788888 9999999999 44443     33


Q ss_pred             HhcCC-CCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          196 IAKMK-KGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       196 l~~mk-~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      +..++ ++.++|+++.|--.  +.+.+.+..+
T Consensus        74 ~~~l~~~~~ivv~~~~g~~~--~~l~~~~~~~  103 (263)
T 1yqg_A           74 CKNIRTNGALVLSVAAGLSV--GTLSRYLGGT  103 (263)
T ss_dssp             HTTCCCTTCEEEECCTTCCH--HHHHHHTTSC
T ss_pred             HHHhccCCCEEEEecCCCCH--HHHHHHcCCC
Confidence            33443 28999999665443  6676766653

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.84  E-value=3.1e-09  Score=97.95  Aligned_cols=111  Identities=12%  Similarity=0.096  Sum_probs=80.6

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHH-HhcC--ceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~-~~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      ..+++|||||+|.||+.+++.|.. +|+ +|.+|||++.+.+.+ +..+  +....+++++++++|+|++++|..   ..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cc
Confidence            356799999999999999998865 487 799999976444433 3335  666778999999999999999953   44


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      ++..   +.+++|.++++++....- ...+.+.+.+...  ..+|
T Consensus       210 v~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          210 ILFG---EWVKPGAHINAVGASRPD-WRELDDELMKEAV--LYVD  248 (312)
T ss_dssp             CBCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHSE--EEES
T ss_pred             ccCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcCE--EEEC
Confidence            5544   578999999999876553 3444444433332  3566

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.79  E-value=7.1e-09  Score=99.80  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=80.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV  177 (304)
                      ++|+|||+|.||..+|..|...|++|+++|+++...+...+                   .| .....++++.+++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            47999999999999999999999999999997543333222                   22 44556788888999999


Q ss_pred             EEcCCCChh---------hhccccHHHHhcCCC---CCEEEEcCCCchhc-hHHHHHHHHc
Q 021995          178 VVNTPLTEK---------TRGMFDKDRIAKMKK---GVLIVNNARGAIMD-TQAVVDACSS  225 (304)
Q Consensus       178 i~~~p~~~~---------t~~~i~~~~l~~mk~---g~ilVn~~rg~~vd-~~aL~~aL~~  225 (304)
                      ++|+|....         ....+ ++..+.+++   +.++|+.+...+-. .+.+.+.+.+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999986543         33332 445566788   99999998766655 6667777765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.79  E-value=2.2e-08  Score=96.78  Aligned_cols=107  Identities=14%  Similarity=0.196  Sum_probs=83.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------------CceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------------GAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDvV  177 (304)
                      -+++|||+|.||..+|..|...|++|++||+++.+.+...+.                    +.....++.+.+++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            489999999999999999999999999999987665544331                    134557888999999999


Q ss_pred             EEcCCCChh----------hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          178 VVNTPLTEK----------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       178 i~~~p~~~~----------t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      ++|+|....          .+..+ ++..+.|+++.++|+.|.-++-..+.+.+.+.+
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            999885432          22332 466778999999999997666666777776665

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.76  E-value=1.6e-08  Score=97.90  Aligned_cols=107  Identities=14%  Similarity=0.204  Sum_probs=80.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------------------cCceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------------------~g~~~~~~l~ell~~aDvV  177 (304)
                      ++|+|||+|.||..+|..|...|++|++||+++...+...+                    .+.....++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            58999999999999999999999999999997643332222                    1234556888899999999


Q ss_pred             EEcCCCCh---------hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          178 VVNTPLTE---------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       178 i~~~p~~~---------~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      ++|+|...         .....+ ++..+.++++.++|+.+.-++-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998653         233332 456677899999999997555555666666554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.74  E-value=5.6e-09  Score=90.07  Aligned_cols=116  Identities=18%  Similarity=0.234  Sum_probs=80.7

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cC-------ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TG-------AKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g-------~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      ++|+|+| .|.||+.+++.|...|++|.+++|++...+...+ .+       +. ..+++++++++|+|++++|. ..+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence            4799999 9999999999999999999999997543332222 22       33 35788888999999999994 3333


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhc------------hHHHHHHHHcCCceEEEeecCCCCCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMD------------TQAVVDACSSGHIAGYSGDVWNPQPA  241 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd------------~~aL~~aL~~g~i~ga~lDV~~~ep~  241 (304)
                      .++ .+..+.++ +.++|+++.|--.+            .+.+.+.+..    ...++.+.+.|.
T Consensus        79 ~~~-~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           79 DTA-RDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             HHH-HHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             HHH-HHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            333 23334454 89999999876532            4566666653    235677776653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.73  E-value=4.6e-08  Score=91.91  Aligned_cols=185  Identities=10%  Similarity=0.048  Sum_probs=116.3

Q ss_pred             eee-ccccccchhchhHHHhc-CCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEc---CCCC-----hhHHHHHHH-
Q 021995           13 AFA-SSGFLRSSSRFSRHYAS-SGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEV---TGSN-----VVSVAEDEL-   81 (304)
Q Consensus        13 ~~~-~~~~~~~~~~~~~~l~~-~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~---~g~~-----~~~vAE~al-   81 (304)
                      ..| -+.++...++...++.. .+.+..+.......+    ...++.+.+.|+...|.   |--.     -.++++.+- 
T Consensus        63 ~~~~ad~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~----~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~  138 (361)
T 1pjc_A           63 DAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAA----RELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGR  138 (361)
T ss_dssp             HHHTSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGC----HHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHH
T ss_pred             HHhcCCeEEEECCCCHHHHHhhcCCCEEEEEeccccC----HHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHH
Confidence            445 23456666666666633 466656554444443    22355778889988864   3211     245555444 


Q ss_pred             -HHHHHHHhCcchhhHHHHhCC-cccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc
Q 021995           82 -MRILILVRNFLPGHHQVISGE-WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET  159 (304)
Q Consensus        82 -~~~L~~~R~~~~~~~~~~~~~-w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~  159 (304)
                       +.++.... +...    ..|. +....    -..+.+++|+|+|.|.+|+.+++.++.+|++|+++|+++.+.+...+.
T Consensus       139 ~a~~~gA~n-t~~~----~~g~G~~l~~----l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~  209 (361)
T 1pjc_A          139 LSVQFGARF-LERQ----QGGRGVLLGG----VPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL  209 (361)
T ss_dssp             HHHHHHHHH-TSGG----GTSCCCCTTC----BTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHH-Hhhc----cCCCceeccC----CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh
Confidence             44444432 2211    1111 11011    124778999999999999999999999999999999976554444443


Q ss_pred             Ccee-------cCCHHhhcCcCCEEEEcCCCCh-hhhccccHHHHhcCCCCCEEEEcCC
Q 021995          160 GAKF-------EEDLDTMLPKCDIVVVNTPLTE-KTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       160 g~~~-------~~~l~ell~~aDvVi~~~p~~~-~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +...       ..++.+.+.++|+|+.+++... .+..++.++.++.|+++++++|++-
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          210 FGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             HGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             hCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            3211       1245566778999999986532 2335567889999999999999984

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.71  E-value=3.3e-08  Score=92.82  Aligned_cols=98  Identities=13%  Similarity=0.093  Sum_probs=75.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC--------------ceecCCHHhhcCcCCEEEEcCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------------AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .++|+|||.|.||..+|..|...|++|.+|+|++...+...+.+              +....++++.++.+|+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            46899999999999999999999999999999754433333332              2344688899999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhch
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  216 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~  216 (304)
                      .. ..+.++ ++..+.++++.++|+++.|-..++
T Consensus       109 ~~-~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          109 SF-AFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             HH-HHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             HH-HHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            43 344443 456677889999999998766554

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.70  E-value=3e-08  Score=91.91  Aligned_cols=101  Identities=19%  Similarity=0.310  Sum_probs=73.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC-----------ceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-----------AKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g-----------~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ..+|+|||.|.||..+|..|...|++|.+|+|++...+...+.|           +....++++ +..+|+|++++|. .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence            45899999999999999999988999999999754444444444           355567888 8999999999994 4


Q ss_pred             hhhccccHHHHhcCC-CCCEEEEcCCCchh-chHHHHHHHH
Q 021995          186 KTRGMFDKDRIAKMK-KGVLIVNNARGAIM-DTQAVVDACS  224 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk-~g~ilVn~~rg~~v-d~~aL~~aL~  224 (304)
                      .+     ++.+..++ ++.++|+++.|--. +.+.+.+.+.
T Consensus        92 ~~-----~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~  127 (335)
T 1z82_A           92 YI-----REHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVE  127 (335)
T ss_dssp             GH-----HHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHH
T ss_pred             HH-----HHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHH
Confidence            44     33444454 78999999977333 2234444443

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.70  E-value=5.5e-08  Score=92.66  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=78.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc------------------eecCCHHhhcCcCCEEEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA------------------KFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~------------------~~~~~l~ell~~aDvVi~  179 (304)
                      ++|+|||+|.||..+|..|.. |++|++||+++.+.+...+.+.                  ....++.+.+++||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999998 9999999997644333333222                  334567778889999999


Q ss_pred             cCCCCh----------hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          180 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       180 ~~p~~~----------~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      |+|...          .....+ ++..+ ++++.++|+.+.-++-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999753          233333 34556 8999999998777766677777777654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.69  E-value=6.6e-08  Score=94.31  Aligned_cols=116  Identities=15%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLP  172 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~l~ell~  172 (304)
                      -++|||||.|.||..+|..+...|++|++||+++...+...+           .|             +....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            358999999999999999999999999999997644333221           12             23345664 588


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                      +||+|+.++|...+.+..+-++..+.++++++|+ |+|.-++   ..+.+.+. ..-..+++..|.
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~-~p~~~ig~hf~~  145 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIK-NPERVAGLHFFN  145 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSS-SGGGEEEEEECS
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHcc-CccceEEeeecC
Confidence            9999999999876665545466777899999994 6664433   34544443 233445666554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.69  E-value=4.3e-08  Score=90.98  Aligned_cols=105  Identities=16%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-Cc--------------eecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GA--------------KFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~--------------~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|+|||+|.||..+|..|...|++|.+++|++...+...+. +.              ....+++++++.+|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999976444433333 21              234678888899999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      .... ..++ ++..+.+++++++|++ .|.......+.+.+.+
T Consensus        85 ~~~~-~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIHH-ASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGGH-HHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chHH-HHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            6543 3343 5566778999999998 4422234445555554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.69  E-value=2.9e-08  Score=86.67  Aligned_cols=90  Identities=18%  Similarity=0.261  Sum_probs=66.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEE-EcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~-~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      -++|+|||+|.||..+++.|...|++|.+ ++|++...+. ..+.|.....+..+.++++|+|++++|.. ..     .+
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~-----~~   96 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SI-----AD   96 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GH-----HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HH-----HH
Confidence            46899999999999999999989999998 9998755444 33456544445556689999999999842 22     23


Q ss_pred             HHhcC--CCCCEEEEcCCCc
Q 021995          195 RIAKM--KKGVLIVNNARGA  212 (304)
Q Consensus       195 ~l~~m--k~g~ilVn~~rg~  212 (304)
                      .+..+  .++.++|+++-|-
T Consensus        97 v~~~l~~~~~~ivi~~~~g~  116 (220)
T 4huj_A           97 IVTQVSDWGGQIVVDASNAI  116 (220)
T ss_dssp             HHTTCSCCTTCEEEECCCCB
T ss_pred             HHHHhhccCCCEEEEcCCCC
Confidence            33333  3588999998664

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.68  E-value=2e-08  Score=92.50  Aligned_cols=105  Identities=12%  Similarity=0.044  Sum_probs=76.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcC--CCCChhHHHhcCc-----------eecC--CHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--VKMDPQLEKETGA-----------KFEE--DLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr--~~~~~~~~~~~g~-----------~~~~--~l~ell~~aDvVi~~~p  182 (304)
                      ++|+|||+|.||..+|..|...|++|++|+|  ++...+...+.+.           ....  ++.+.++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999988999999999  6544444444332           3334  67788899999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCc---hh-chHHHHHHHHc
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA---IM-DTQAVVDACSS  225 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~---~v-d~~aL~~aL~~  225 (304)
                      .. .+..++ .+..+ ++++.++|+++.|-   -. ..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            64 344443 34556 88899999998775   21 33455666654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.67  E-value=2.7e-08  Score=88.58  Aligned_cols=99  Identities=18%  Similarity=0.326  Sum_probs=71.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++|+|||+|.||+.+++.|...|    ++|.+|||++..      .|+....+++++++++|+|++++|. .....++ 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~-   75 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVL-   75 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHH-
Confidence            458999999999999999998888    689999997644      4677667888999999999999994 3444443 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      .+..+.+ ++.++|....|-  +.+.+.+.+..+
T Consensus        76 ~~l~~~l-~~~~vv~~~~gi--~~~~l~~~~~~~  106 (262)
T 2rcy_A           76 NNIKPYL-SSKLLISICGGL--NIGKLEEMVGSE  106 (262)
T ss_dssp             HHSGGGC-TTCEEEECCSSC--CHHHHHHHHCTT
T ss_pred             HHHHHhc-CCCEEEEECCCC--CHHHHHHHhCCC
Confidence            2344455 455566555443  334566666543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.63  E-value=4.6e-08  Score=88.86  Aligned_cols=108  Identities=13%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------------CCHHhhcC---cCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLP---KCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------------~~l~ell~---~aDvVi~~~p  182 (304)
                      ++|+|||.|.||..+|..|...|++|++|+|++...+...+.|....            .+.+++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            58999999999999999999999999999997644444444443211            13334444   8999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      . ..+..++ ++..+.++++.++|+++.|-- ..+.+.+.+.+.++
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~v  126 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENI  126 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccE
Confidence            4 3444444 455667889999999987532 23455555544433

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.62  E-value=1.4e-08  Score=95.07  Aligned_cols=95  Identities=21%  Similarity=0.278  Sum_probs=71.3

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC--------------ceecCCHHhhcCcCCEEEEcCCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------------AKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      +|+|||+|.||..+|..|...|++|.+|+|++...+...+.+              +....+++++++.+|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999999754333333322              34446788889999999999994 


Q ss_pred             hhhhccccHH---HHhcCCC-CCEEEEcCCCchh
Q 021995          185 EKTRGMFDKD---RIAKMKK-GVLIVNNARGAIM  214 (304)
Q Consensus       185 ~~t~~~i~~~---~l~~mk~-g~ilVn~~rg~~v  214 (304)
                      .....++...   ....+++ +.++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4444444220   4455778 8999999877444

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.62  E-value=4.3e-08  Score=91.12  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=71.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCC-------CeEEEEcCCCC-----ChhHHHhc--------------CceecCCHHhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTM  170 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G-------~~V~~~dr~~~-----~~~~~~~~--------------g~~~~~~l~el  170 (304)
                      .++|+|||.|.||..+|..|...|       ++|.+|+|++.     ..+...+.              ++....++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            458999999999999999998878       89999999765     33332221              23334678888


Q ss_pred             cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995          171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       171 l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      ++++|+|++++|. ..+..++ ++..+.+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999995 3444443 355567789999999998754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.62  E-value=3.5e-08  Score=92.84  Aligned_cols=94  Identities=11%  Similarity=0.167  Sum_probs=70.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC-------CeEEEEcCCCC-----ChhHHHhc--------------CceecCCHHhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTML  171 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G-------~~V~~~dr~~~-----~~~~~~~~--------------g~~~~~~l~ell  171 (304)
                      ++|+|||.|.||..+|..|...|       ++|++|+|++.     ..+...+.              ++....++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998778       89999999765     33333221              234456788888


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHHh----cCCCCCEEEEcCCCch
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRIA----KMKKGVLIVNNARGAI  213 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l~----~mk~g~ilVn~~rg~~  213 (304)
                      +++|+|++++|. .....++ .+..+    .+++++++|+++.|-.
T Consensus       102 ~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCSCE
T ss_pred             cCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCccc
Confidence            999999999994 4444443 34445    6788999999988743

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.61  E-value=6.2e-08  Score=94.38  Aligned_cols=107  Identities=12%  Similarity=0.161  Sum_probs=76.2

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------------CceecCCHHhhcCcCCE
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------------GAKFEEDLDTMLPKCDI  176 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDv  176 (304)
                      .++|+|||+|.||..+|..|...|++|++||+++...+...+.                    ......++++.++.||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            4699999999999999999999999999999975433322221                    13445677788889999


Q ss_pred             EEEcCCCC---------hhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          177 VVVNTPLT---------EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       177 Vi~~~p~~---------~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      |++|+|..         ...+..+ ++..+.+++++++|+.+.-++=..+.+.+.+.
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~  143 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA  143 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence            99999863         2333333 45567789999999998543433444544444

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.59  E-value=1.4e-07  Score=85.27  Aligned_cols=104  Identities=16%  Similarity=0.122  Sum_probs=74.4

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      |+++.|+|.|.+|+.++..|...|.+|++++|+..+.+...+.++... +++++ .++|+|+.++|........++.+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l  195 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPLNKEVL  195 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence            899999999999999999999999999999999876654446665443 44444 3899999999975332223555533


Q ss_pred             h-cCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          197 A-KMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       197 ~-~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      . .++++.+++|+...+  .+. |.++.++
T Consensus       196 ~~~l~~~~~v~D~vY~P--~T~-ll~~A~~  222 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYGF--LTP-FLSLAKE  222 (269)
T ss_dssp             HHHHHHCSEEEESCCSS--CCH-HHHHHHH
T ss_pred             HhhCCCCCEEEEeCCCC--chH-HHHHHHH
Confidence            2 567788888887765  444 4443333

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.58  E-value=4e-07  Score=88.31  Aligned_cols=116  Identities=13%  Similarity=0.167  Sum_probs=78.0

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------cC-----------ceecCCHHhhcCcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-----------AKFEEDLDTMLPKC  174 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-----------~~~~~~l~ell~~a  174 (304)
                      -++|+|||.|.||..+|..+...|++|++||+++...+...+           .|           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999997643322211           01           1223466 568899


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      |+|+.++|...+....+-++..+.++++++|+....+-  ....|.+.+.. .-..+++..|
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~-~~~~ig~hf~  174 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDR-PQLVIGTHFF  174 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcC-CcceEEeecC
Confidence            99999999765444444455667789999998744433  33356655532 2233455545

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.56  E-value=1.3e-07  Score=76.96  Aligned_cols=103  Identities=13%  Similarity=0.174  Sum_probs=79.2

Q ss_pred             cCCCEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          115 LEGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       115 L~g~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      ..-++|+|||.    |.+|+.+++.|...|++|+.+|++..  +   -.|...+.+++|+....|++++++| .+....+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~--~---i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v   85 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD--E---IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQV   85 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS--E---ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCC--e---ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHH
Confidence            46679999999    99999999999999999888887642  1   1477777899999999999999999 4555555


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +. +..+ ++.+.++++.+.    ..+++.+..++..+.
T Consensus        86 ~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           86 AK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            53 4444 566777777753    368888888887776

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.55  E-value=1.4e-07  Score=91.73  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccC-CC-eEEEEcCCCC----ChhHHHh---------------------cC-ceecCCHH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPF-NC-NLLYHDRVKM----DPQLEKE---------------------TG-AKFEEDLD  168 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~-G~-~V~~~dr~~~----~~~~~~~---------------------~g-~~~~~~l~  168 (304)
                      -++|+|||+|.||..+|..|... |+ +|++||+++.    ..+...+                     .+ ....++ .
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence            36899999999999999999999 99 9999999876    3222211                     12 233345 6


Q ss_pred             hhcCcCCEEEEcCCCCh--------hhhccc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHH
Q 021995          169 TMLPKCDIVVVNTPLTE--------KTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDA  222 (304)
Q Consensus       169 ell~~aDvVi~~~p~~~--------~t~~~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a  222 (304)
                      +.+++||+|++|+|...        +...+.  .+...+.+++|.++|+.|.-++-..+.+.+.
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            78899999999998652        222222  2466778999999999998777777777753

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.54  E-value=7.7e-08  Score=93.78  Aligned_cols=107  Identities=10%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHh-------------------cCceecCCHHhhcCcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKE-------------------TGAKFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv  176 (304)
                      ++|+|||+|.||..+|..|...  |++|++||+++.+.+...+                   .+.....++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999876  7999999987533322221                   023444567788889999


Q ss_pred             EEEcCCCChh--------------hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          177 VVVNTPLTEK--------------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       177 Vi~~~p~~~~--------------t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      |++|+|....              .... -++..+.++++.++|+.|.-++-..+.+.+.+.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~-~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESV-SRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHH-HHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999985431              2222 2456677899999999887666556677777776

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.53  E-value=2.2e-07  Score=94.71  Aligned_cols=117  Identities=12%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP  172 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~  172 (304)
                      -++|||||.|.||..+|..+...|++|++||+++...+..           .+.|             +....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3579999999999999999999999999999976433221           1112             2334566 6788


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                      +||+|+.++|.+.+.+..+-.+..+.++++++|+..+.+-  ....+.+.+. ..-..+++..|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~-~~~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALK-RPENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCS-CGGGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhc-CccceEEEEccC
Confidence            9999999999877665555456777889999998544433  2334554442 222334555443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.51  E-value=8e-08  Score=86.32  Aligned_cols=92  Identities=17%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC---c----e-ecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG---A----K-FEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g---~----~-~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      ++|+|||+|.||..+|..|...|++|++|+|++...+.....+   .    . ..++ .+.++++|+|++++|... +..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~~-~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAWQ-VSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGGG-HHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHHh-HHH
Confidence            4799999999999999999999999999999765433222211   1    0 1233 456778999999999653 444


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCc
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ++ ++..+.++++.++|++..|-
T Consensus        79 v~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           79 AV-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             HH-HHHHTTSCTTSCEEEECSSS
T ss_pred             HH-HHHHhhCCCCCEEEEecCCC
Confidence            44 45667788999999987653

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.50  E-value=2.8e-07  Score=81.18  Aligned_cols=99  Identities=21%  Similarity=0.286  Sum_probs=74.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeE-EEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V-~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+|||||+|.||+.+++.+...|+++ .++|++.. .+.       .+.++++++ .++|+|++|+|.....     +..
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~-----~~~   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------MVRGIDEFLQREMDVAVEAASQQAVK-----DYA   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------EESSHHHHTTSCCSEEEECSCHHHHH-----HHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------hcCCHHHHhcCCCCEEEECCCHHHHH-----HHH
Confidence            37999999999999999998789997 68998742 211       456899999 6999999999943221     233


Q ss_pred             HhcCCCCCEEEEcCCCchhch---HHHHHHHHcCCce
Q 021995          196 IAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  229 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~---~aL~~aL~~g~i~  229 (304)
                      ...++.|..+|+.+.+..-+.   +.|.++.++....
T Consensus        68 ~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           68 EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            456788999999988776655   5677777664443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.50  E-value=5.4e-08  Score=87.84  Aligned_cols=87  Identities=16%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeE-EEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V-~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      ++|||||+|.||+.+++.|... ++| .+||+++...+.. ...+. ...+++++++++|+|++++|....      .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~~------~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRYI------KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTTH------HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHHH------HHH
Confidence            4799999999999999999877 888 5899976443333 24465 556788888999999999996531      344


Q ss_pred             HhcC-CCCCEEEEcCCCc
Q 021995          196 IAKM-KKGVLIVNNARGA  212 (304)
Q Consensus       196 l~~m-k~g~ilVn~~rg~  212 (304)
                      +..+ +++.++||++-+.
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            4445 6889999998553

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.48  E-value=9.7e-08  Score=86.62  Aligned_cols=108  Identities=14%  Similarity=0.145  Sum_probs=72.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCC--hhhhc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLT--EKTRG  189 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~--~~t~~  189 (304)
                      ++.|+++.|+|.|.+|+.++..|...|+ +|++++|+..+.+.... ......+++.++++++|+|+.++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            5789999999999999999999999999 89999998643332211 11122345667788999999999964  22222


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      .++   .+.++++.+++|+...+. .+ .|.++.++.
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~  225 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQR  225 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHT
T ss_pred             CCC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHC
Confidence            232   355789999999986643 23 344444443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.48  E-value=5.7e-07  Score=91.80  Aligned_cols=116  Identities=12%  Similarity=0.076  Sum_probs=78.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..+...|++|++||+++...+....           .|             +....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            68999999999999999999999999999997643322111           11             2234456 56899


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  237 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (304)
                      ||+|+.++|...+.+..+-.+..+.++++++++..+.+-.+  ..+.+.+. ..-..+++..|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i--~~la~~~~-~p~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDL--NKIGERTK-SQDRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHTTTCS-CTTTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCH--HHHHHHhc-CCCCEEEecCCC
Confidence            99999999987665554545667788999999654443323  34544442 222334555454

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.47  E-value=2.7e-07  Score=88.67  Aligned_cols=110  Identities=16%  Similarity=0.141  Sum_probs=76.4

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc-eecCCHHhh---------------cCcCCEEE
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFEEDLDTM---------------LPKCDIVV  178 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-~~~~~l~el---------------l~~aDvVi  178 (304)
                      -+|+++.|||+|.||..+|..|...|++|++||+++.+.+...+... .+...++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            47889999999999999999999999999999998644443332111 011122222               46799999


Q ss_pred             EcCCCChhhh--------ccc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          179 VNTPLTEKTR--------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       179 ~~~p~~~~t~--------~~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +|+|......        .+.  .+...+.|++|.++|+.|.-++-..+.+.+.+.
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence            9999654211        122  245677899999999999888777777776543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.46  E-value=1.2e-07  Score=79.91  Aligned_cols=95  Identities=16%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceec----CC---HHhh--cCcCCEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM--LPKCDIVVVNTP  182 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~----~~---l~el--l~~aDvVi~~~p  182 (304)
                      .++.+++|+|+|+|.+|+.+++.|+.. |++|+++|+++...+...+.|+...    .+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357788999999999999999999998 9999999997655555555565422    12   3444  778999999998


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..+.+..++  ..++.+.+...+|...
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence            655443332  3556666666666543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.45  E-value=1.7e-07  Score=83.94  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=75.7

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCChhh-hcc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKT-RGM  190 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t-~~~  190 (304)
                      .+.| +++|||.|.+|++++..|...|+ +|++++|+..+.+.. .+.+....+++.+.++++|+|+.++|..-.. ...
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~  184 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELP  184 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCS
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCC
Confidence            3678 99999999999999999999999 899999975322211 1222234557778889999999999864211 123


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ++.+.   ++++.+++|+.-+   .+.-|.++.+.|
T Consensus       185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            44433   5789999999988   555555666555

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.44  E-value=3.8e-07  Score=83.47  Aligned_cols=112  Identities=16%  Similarity=0.275  Sum_probs=77.1

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHhcCc---eec--CCHHhhcCcCCEEEEcCCCCh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGA---KFE--EDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~~g~---~~~--~~l~ell~~aDvVi~~~p~~~  185 (304)
                      .++.|++++|+|.|.+|+.++..|...|+ +|++++|+..+.+ .++..+.   ...  +++.+.+.++|+|+.++|...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            35789999999999999999999999998 8999999764333 3333332   211  246677889999999999654


Q ss_pred             hhh--c-cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          186 KTR--G-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       186 ~t~--~-~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ...  . .++   ...++++.+++|++..+ ..+ .|.+..++..+.
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T-~ll~~A~~~G~~  258 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYNP-LET-KWLKEAKARGAR  258 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCSS-SSC-HHHHHHHHTTCE
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCCC-CCC-HHHHHHHHCcCE
Confidence            211  1 122   24578899999998753 233 355555554443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.43  E-value=2.2e-07  Score=76.17  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             CCEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      -++|+|||+    |.+|..+++.|...|++|+.+|++....+   -.|...+.+++++....|++++++|. +....++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~---i~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~~   88 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT---LLGQQGYATLADVPEKVDMVDVFRNS-EAAWGVAQ   88 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE---ETTEECCSSTTTCSSCCSEEECCSCS-THHHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc---cCCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH
Confidence            568999999    89999999999999999888887541011   14777777899998899999999994 55556653


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       +..+ ...+.++++.+.-    ++++.+++++..+.
T Consensus        89 -~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           89 -EAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLS  119 (145)
T ss_dssp             -HHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCE
T ss_pred             -HHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCE
Confidence             3444 5666777776422    78899999988777

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.43  E-value=3.1e-07  Score=81.10  Aligned_cols=70  Identities=11%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      -++|||||+|.||..+|+.|+..|++|.+|++.                  ++ +++||  ++++|.. ....++ .+..
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl-~~l~   62 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV-EKLS   62 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH-HHHH
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH-HHHH
Confidence            368999999999999999999999999999972                  12 46789  7888875 444444 4666


Q ss_pred             hcCCCCCEEEEcC
Q 021995          197 AKMKKGVLIVNNA  209 (304)
Q Consensus       197 ~~mk~g~ilVn~~  209 (304)
                      +.+++++++++++
T Consensus        63 ~~l~~g~ivvd~s   75 (232)
T 3dfu_A           63 AFARRGQMFLHTS   75 (232)
T ss_dssp             TTCCTTCEEEECC
T ss_pred             HhcCCCCEEEEEC
Confidence            7789999999985

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.41  E-value=4.7e-07  Score=86.31  Aligned_cols=96  Identities=24%  Similarity=0.347  Sum_probs=76.5

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC------CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK------MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~------~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .-|+||+|+|||+|+-|++-|..|+..|.+|++--|..      .+...+.+.|.... +.+|+.+.||+|++.+|...+
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~q  111 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQH  111 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGGH
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhhH
Confidence            35899999999999999999999999999988765521      22345666787765 799999999999999996544


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      . .+. ++..+.||+|+.|. .+.|-
T Consensus       112 ~-~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          112 S-DVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             H-HHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             H-HHH-HHHHhhCCCCCEEE-ecCcc
Confidence            3 333 56899999999987 56665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.40  E-value=6.6e-07  Score=73.44  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec----CC---HHhh-cCcCCEEEEcCCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----ED---LDTM-LPKCDIVVVNTPL  183 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~----~~---l~el-l~~aDvVi~~~p~  183 (304)
                      ..+.+++|.|+|+|.+|+.+++.|+..|++|+++++++...+... ..|....    .+   +.+. +.++|+|++++|.
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence            457789999999999999999999999999999999765444444 4454321    12   2333 6789999999986


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ...+..+  ......+.+...+|-..++.
T Consensus        95 ~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           95 DSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             HHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             cHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            4433222  23444445556666665554

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.39  E-value=9.8e-07  Score=80.47  Aligned_cols=135  Identities=19%  Similarity=0.266  Sum_probs=90.7

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|+++++.              ..++.+.+++||+|+.+++..    ++
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p----~~  221 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQP----EM  221 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCT----TC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCc----cc
Confidence            4578999999999996 6999999999999999999753              247899999999999999852    46


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC-CceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  269 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~  269 (304)
                      +..+.   +|+|+++||+|...+-|..     -++| ++-|   ||-..+-       . -.--.+||=-+|--.-+...
T Consensus       222 I~~~~---vk~GavVIDVgi~~~~d~~-----~~~g~klvG---DVdf~~v-------~-~~a~~iTPVPGGVGpmTiam  282 (301)
T 1a4i_A          222 VKGEW---IKPGAIVIDCGINYVPDDK-----KPNGRKVVG---DVAYDEA-------K-ERASFITPVPGGVGPMTVAM  282 (301)
T ss_dssp             BCGGG---SCTTCEEEECCCBC---------------CCBC---SBCHHHH-------T-TTCSEECCSSSSHHHHHHHH
T ss_pred             CCHHH---cCCCcEEEEccCCCccccc-----ccCCCeeec---cccHHHh-------h-hhceEeCCCCCCccHHHHHH
Confidence            76665   5899999999987643321     1123 3332   5532211       0 01346889777765555555


Q ss_pred             HHHHHHHHHHHHHc
Q 021995          270 YAAGVKDMLDRYFK  283 (304)
Q Consensus       270 ~~~~~~~~l~~~~~  283 (304)
                      +...+++..++++.
T Consensus       283 Ll~Ntv~aa~~~~~  296 (301)
T 1a4i_A          283 LMQSTVESAKRFLE  296 (301)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            55555555555443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.39  E-value=7.2e-07  Score=80.80  Aligned_cols=80  Identities=23%  Similarity=0.321  Sum_probs=67.5

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++++++.              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNF  217 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCC----CCC
Confidence            3578999999999988 69999999999999999997632              3788999999999999983    345


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCc
Q 021995          191 FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +..+.   +|+|+++||++...
T Consensus       218 I~~~~---vk~GavVIDvgi~~  236 (285)
T 3l07_A          218 ITADM---VKEGAVVIDVGINH  236 (285)
T ss_dssp             BCGGG---SCTTCEEEECCCEE
T ss_pred             CCHHH---cCCCcEEEEecccC
Confidence            66654   59999999999665

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.39  E-value=6.5e-07  Score=81.08  Aligned_cols=81  Identities=21%  Similarity=0.361  Sum_probs=68.4

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++++++.              .++++.+++||+|+.+++.    .++
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p~~  216 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNL  216 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCC----CCc
Confidence            4578999999999988 69999999999999999998632              3788999999999999983    346


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCch
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      +..+.   +|+|+++||++.-.+
T Consensus       217 I~~~~---vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          217 LRSDM---VKEGVIVVDVGINRL  236 (285)
T ss_dssp             BCGGG---SCTTEEEEECCCEEC
T ss_pred             CCHHH---cCCCeEEEEeccCcc
Confidence            66654   599999999997664

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.39  E-value=1e-06  Score=79.68  Aligned_cols=114  Identities=21%  Similarity=0.284  Sum_probs=84.3

Q ss_pred             ccccCCCEEEEEeeChh-hHHHHHHhccC--CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          112 AYDLEGKTVGTVGCGRI-GKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~I-G~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      +.++.|+++.|||.|.+ |+.+|+.|...  |++|++++++.              .++.+.+++||+|+.+++..    
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p----  214 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVA----  214 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCT----
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCC----
Confidence            45799999999999985 99999999999  89999997643              47899999999999999832    


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  268 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~  268 (304)
                      +++..+.   +|+|+++||+|...+-|          |    ..=||- .+-       .+ .--.+||=-+|--.-+..
T Consensus       215 ~~I~~~~---vk~GavVIDVgi~r~~~----------g----lvGDVd-~~v-------~~-~a~~iTPVPGGVGpmT~a  268 (281)
T 2c2x_A          215 HLLTADM---VRPGAAVIDVGVSRTDD----------G----LVGDVH-PDV-------WE-LAGHVSPNPGGVGPLTRA  268 (281)
T ss_dssp             TCBCGGG---SCTTCEEEECCEEEETT----------E----EEESBC-GGG-------GG-TCSEEECSSSSSHHHHHH
T ss_pred             cccCHHH---cCCCcEEEEccCCCCCC----------C----ccCccc-cch-------hh-heeeecCCCCCccHHHHH
Confidence            4576665   58999999999766432          2    445775 221       11 224578877776544443


Q ss_pred             H
Q 021995          269 R  269 (304)
Q Consensus       269 ~  269 (304)
                      .
T Consensus       269 ~  269 (281)
T 2c2x_A          269 F  269 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.38  E-value=5.5e-07  Score=81.66  Aligned_cols=127  Identities=17%  Similarity=0.264  Sum_probs=89.6

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|+++++..              .++.+.+++||+|+.+++..    ++
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p----~l  215 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKP----GF  215 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCT----TC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCc----Cc
Confidence            4579999999999997 59999999999999999997532              47889999999999999832    46


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+.   +|+|+++||+|...+-|          |++   .-||-..+-       .+ .--.+||=-+|--.-+...+
T Consensus       216 I~~~~---vk~GavVIDVgi~r~~~----------g~l---~GDVdf~~v-------~~-~a~~iTPVPGGVGpmT~a~L  271 (288)
T 1b0a_A          216 IPGDW---IKEGAIVIDVGINRLEN----------GKV---VGDVVFEDA-------AK-RASYITPVPGGVGPMTVATL  271 (288)
T ss_dssp             BCTTT---SCTTCEEEECCCEECTT----------SCE---ECSBCHHHH-------HH-HCSEECCSSSSSHHHHHHHH
T ss_pred             CCHHH---cCCCcEEEEccCCccCC----------CCc---cCCcCHHHH-------hh-hccEecCCCCCccHHHHHHH
Confidence            66655   59999999999766432          433   346532110       00 12458887777655555554


Q ss_pred             HHHHHHHHHH
Q 021995          271 AAGVKDMLDR  280 (304)
Q Consensus       271 ~~~~~~~l~~  280 (304)
                      ...+++..++
T Consensus       272 l~Ntv~aa~~  281 (288)
T 1b0a_A          272 IENTLQACVE  281 (288)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.36  E-value=6.4e-07  Score=80.75  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=66.1

Q ss_pred             cCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          115 LEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       115 L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      +.|+++.|||.|. +|+.+|+.|...|++|+++++..              .++++.+++||+|+.+++.    .+++..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~~  209 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------KDIGSMTRSSKIVVVAVGR----PGFLNR  209 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHHSSEEEECSSC----TTCBCG
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------ccHHHhhccCCEEEECCCC----CccccH
Confidence            8999999999986 89999999999999999998631              4788999999999999984    246666


Q ss_pred             HHHhcCCCCCEEEEcCCCc
Q 021995          194 DRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~  212 (304)
                      +.   +|+|+++||++...
T Consensus       210 ~~---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          210 EM---VTPGSVVIDVGINY  225 (276)
T ss_dssp             GG---CCTTCEEEECCCEE
T ss_pred             hh---ccCCcEEEEeccCc
Confidence            54   59999999999765

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.34  E-value=8.7e-07  Score=80.25  Aligned_cols=81  Identities=22%  Similarity=0.388  Sum_probs=67.8

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+++++..              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGK----PGL  217 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCC----CCC
Confidence            4578999999999987 79999999999999999987632              3788999999999999983    346


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCch
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      +..+.   +|+|+++||++.-.+
T Consensus       218 I~~~~---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          218 VKGEW---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             BCGGG---SCTTCEEEECCSCSS
T ss_pred             CCHHH---cCCCeEEEEeccccc
Confidence            66654   599999999996653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.34  E-value=5.5e-07  Score=83.43  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCcCCEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------------~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .++|+|||.|.||..+|..|...|++|.+++|. ...+...+.|..             ...++++ +..+|+|++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            368999999999999999999999999999984 233333444432             2346666 5899999999995


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                       ..+..++ ++..+.+++++++|.+..|
T Consensus        81 -~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 -PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             -HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             -hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence             3444333 2344556789999999988

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.32  E-value=2.2e-07  Score=84.60  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=72.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-----C-CeEEEEcCCCCChhHHHh-cCceecC-------------CHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-----N-CNLLYHDRVKMDPQLEKE-TGAKFEE-------------DLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-----G-~~V~~~dr~~~~~~~~~~-~g~~~~~-------------~l~ell~~aDvV  177 (304)
                      ++|+|||+|.||..+|..|...     | ++|++|+| +...+...+ .|.....             +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            4899999999999999999887     8 99999998 433444444 4543221             223457899999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      ++++|... +..++ ++..+.++++.++|++..|- -..+.+.+.+...
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~  133 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDT  133 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCC
Confidence            99999654 33333 34555677889999987762 2224455555443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.32  E-value=3.1e-06  Score=77.81  Aligned_cols=107  Identities=16%  Similarity=0.086  Sum_probs=76.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc---------------eecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---------------KFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~---------------~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|+|||.|.||..+|..|...|++|.+++|+.  .+..++.|.               ....+++++.+.+|+|++++|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            589999999999999999998899999999965  233333332               123466677668999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ... +...+ ++....++++.++|.+..| +-.++.+.+.+...++.
T Consensus        81 ~~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           81 VVE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             CCC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            654 23332 4555667889999988876 22346677777655544

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.31  E-value=8.3e-07  Score=80.97  Aligned_cols=133  Identities=17%  Similarity=0.202  Sum_probs=89.3

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHH--hhcCcCCEEEEcCCCChhhh
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD--TMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~--ell~~aDvVi~~~p~~~~t~  188 (304)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+++++..              .+++  +.+++||+|+.+++.    .
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T--------------~~l~l~~~~~~ADIVI~Avg~----p  221 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT--------------STEDMIDYLRTADIVIAAMGQ----P  221 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS--------------CHHHHHHHHHTCSEEEECSCC----T
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC--------------CCchhhhhhccCCEEEECCCC----C
Confidence            3578999999999988 79999999999999999998732              1455  889999999999984    2


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  268 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~  268 (304)
                      +++..+.   +|+|+++||++...+-|...     ++|.  ...=||...+-        .-.--.+||=-+|--.-+..
T Consensus       222 ~~I~~~~---vk~GavVIDvgi~~~~~~~~-----~~g~--kl~GDVdf~~v--------~~~a~~iTPVPGGVGpmT~a  283 (300)
T 4a26_A          222 GYVKGEW---IKEGAAVVDVGTTPVPDPSR-----KDGY--RLVGDVCFEEA--------AARAAWISPVPGGVGPMTIA  283 (300)
T ss_dssp             TCBCGGG---SCTTCEEEECCCEEESCSCS-----TTSC--EEECSBCHHHH--------TTTCSEEECTTTSSSHHHHH
T ss_pred             CCCcHHh---cCCCcEEEEEeccCCcCCcc-----cCCc--eeecCccHHHH--------HhhceEeCCCCCcChHHHHH
Confidence            4666654   59999999999665432110     0110  12335542211        01125689977777665555


Q ss_pred             HHHHHHHHHHHH
Q 021995          269 RYAAGVKDMLDR  280 (304)
Q Consensus       269 ~~~~~~~~~l~~  280 (304)
                      .+...+++..++
T Consensus       284 ~Ll~Ntv~aa~~  295 (300)
T 4a26_A          284 MLLENTLEAFKA  295 (300)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            554444444433

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.31  E-value=1.3e-06  Score=81.80  Aligned_cols=92  Identities=9%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhc-cCC-CeEEEEcCCCCChhHHH-hc----C--ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLK-PFN-CNLLYHDRVKMDPQLEK-ET----G--AKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~-~~G-~~V~~~dr~~~~~~~~~-~~----g--~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ..++++|||.|.+|+.+++.+. ..+ .+|.+|||++.+.+.+. ++    |  +..+++++++++++|+|++|+|... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence            5679999999999999998764 334 57999999865444333 22    4  3456789999999999999999752 


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ...++..   +.+++|..+++++..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            2334443   467999999999863

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.30  E-value=3.4e-07  Score=84.48  Aligned_cols=94  Identities=18%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             ccccCCCEEEEEeeChh-hHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCc--e-e-----c--CCHHhhcCcCCEEEE
Q 021995          112 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGA--K-F-----E--EDLDTMLPKCDIVVV  179 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~I-G~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~--~-~-----~--~~l~ell~~aDvVi~  179 (304)
                      +.++.|+++.|||.|.| |+.+|+.|...|++|+++||+... .+.+..++.  . .     .  .++++.+++||+|+.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs  251 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  251 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence            44799999999999975 999999999999999999986210 000111111  1 1     1  478899999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +++..   .-+|..+.   +|+|+++||+|..
T Consensus       252 Atg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          252 GVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             CCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             CCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            99742   12366555   5899999999854

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.30  E-value=1.1e-06  Score=67.79  Aligned_cols=88  Identities=18%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceec-------CCHHhhcCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      .+++|+|+|.|.||+.+++.|...| ++|++++|++...+.....++...       +++.++++++|+|+.++|.... 
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~-   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT-   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH-
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh-
Confidence            4579999999999999999999999 899999997644443333343211       2455778899999999974321 


Q ss_pred             hccccHHHH-hcCCCCCEEEEcC
Q 021995          188 RGMFDKDRI-AKMKKGVLIVNNA  209 (304)
Q Consensus       188 ~~~i~~~~l-~~mk~g~ilVn~~  209 (304)
                           .... ...+.|...++.+
T Consensus        83 -----~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 -----PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             -----HHHHHHHHHTTCEEECCC
T ss_pred             -----HHHHHHHHHhCCCEEEec
Confidence                 1222 2235677777775

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.29  E-value=1.2e-06  Score=80.74  Aligned_cols=105  Identities=16%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc-------------eecCCHHhhcCcCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------------KFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-------------~~~~~l~ell~~aDvVi~~~  181 (304)
                      ...++|+|||.|.||..+|..|...|++|.+| +++...+...+.|.             ....++++ +..+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            45679999999999999999999999999999 65433343444332             22345544 58999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      |.. .+..++ ++..+.+++++++|.+..|=-. ++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~~-~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGVEN-ADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSSSH-HHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCCc-HHHHHHHcC
Confidence            965 444443 4455667889999999877322 245555554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.26  E-value=7.3e-07  Score=72.03  Aligned_cols=90  Identities=17%  Similarity=0.230  Sum_probs=63.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CC---HHh-hcCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----ED---LDT-MLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~---l~e-ll~~aDvVi~~~p~~~~t~~  189 (304)
                      .+|.|+|+|.+|+.+++.|...|++|+++|+++...+...+.|+...    .+   +++ -+.++|+|++++|....+..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~   87 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE   87 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence            47999999999999999999999999999998755555555665422    12   222 25689999999997655543


Q ss_pred             cccHHHHhcCCCCCEEEEcC
Q 021995          190 MFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +  ...++.+.++..+|-..
T Consensus        88 ~--~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           88 I--VASARAKNPDIEIIARA  105 (140)
T ss_dssp             H--HHHHHHHCSSSEEEEEE
T ss_pred             H--HHHHHHHCCCCeEEEEE
Confidence            3  23455565666666443

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.21  E-value=4.5e-06  Score=76.88  Aligned_cols=89  Identities=21%  Similarity=0.371  Sum_probs=68.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHHh----cCc--eecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~~----~g~--~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ..++++|||.|.+|+.+++.|.. ++ .+|.+|||+ .....+.+    .|+  ... ++++++++||+|++|+|...  
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~--  195 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT--  195 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS--
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC--
Confidence            46799999999999999998875 34 469999998 54444443    354  345 89999999999999998652  


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCc
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                       .++..   +.+++|+.++++|...
T Consensus       196 -pvl~~---~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          196 -PLFAG---QALRAGAFVGAIGSSL  216 (313)
T ss_dssp             -CSSCG---GGCCTTCEEEECCCSS
T ss_pred             -cccCH---HHcCCCcEEEECCCCC
Confidence             45543   4589999999998643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.20  E-value=4.3e-06  Score=66.32  Aligned_cols=90  Identities=18%  Similarity=0.106  Sum_probs=60.0

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec----CCHHh----hcCcCCEEEEcCCCChhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~----~~l~e----ll~~aDvVi~~~p~~~~t  187 (304)
                      +++|+|+|+|.+|+.+++.|...|++|+++|+++...+... ..+....    .+.+.    .+.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            57899999999999999999999999999998654333333 2354321    12222    267899999999864332


Q ss_pred             hccccHHHHhcCCCCCEEEEc
Q 021995          188 RGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      .  .-....+.++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  223455567777666543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.17  E-value=6e-06  Score=75.57  Aligned_cols=107  Identities=16%  Similarity=0.141  Sum_probs=75.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------------~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.  .+..++.|..              ...+.++ +..+|+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence            579999999999999999998899999999965  3444444431              1235544 6789999999995


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  230 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g  230 (304)
                      .. +...+ ++.-+.+++++++|.+.-|= -.++.|.+.+...++.+
T Consensus        80 ~~-~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~  123 (312)
T 3hn2_A           80 FA-NSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIG  123 (312)
T ss_dssp             GG-GGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEE
T ss_pred             CC-cHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEE
Confidence            43 33332 45556678899999998772 22456666676555543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.15  E-value=1.6e-06  Score=69.18  Aligned_cols=96  Identities=13%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCH---Hhh-cCcCCEEEEcCCCChh
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DTM-LPKCDIVVVNTPLTEK  186 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l---~el-l~~aDvVi~~~p~~~~  186 (304)
                      +.+++|+|+|+|.+|+.+++.|...|++|+++|+++...+...+.+....    .+.   +++ +.++|+|+.+++...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            56788999999999999999999999999999986533222223333211    122   233 5689999999986522


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      .. ..-......+.+. .+|....+.
T Consensus        84 ~~-~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 AS-TLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred             HH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence            21 1123444556665 555555444

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.14  E-value=2.8e-06  Score=76.49  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=61.7

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcC----ceecCCHHhhcC-cCCEEEEcCCCChh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETG----AKFEEDLDTMLP-KCDIVVVNTPLTEK  186 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g----~~~~~~l~ell~-~aDvVi~~~p~~~~  186 (304)
                      ..+.+++++|+|.|.+|+.++..|...|.+|++++|+..+.+. +...+    +.. .+++++.+ ++|+|+.++|....
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~~~~  193 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSAGLS  193 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC---
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCCCCC
Confidence            3578999999999999999999999999999999997543322 22222    112 24445444 89999999996532


Q ss_pred             hhc-cccHHHHhcCCCCCEEEEcCCCch
Q 021995          187 TRG-MFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       187 t~~-~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      ... -++.+.   ++++.+++|+.-.+.
T Consensus       194 ~~~~~i~~~~---l~~~~~v~D~~y~p~  218 (272)
T 1p77_A          194 GGTASVDAEI---LKLGSAFYDMQYAKG  218 (272)
T ss_dssp             ----CCCHHH---HHHCSCEEESCCCTT
T ss_pred             CCCCCCCHHH---cCCCCEEEEeeCCCC
Confidence            100 122222   245566666655443

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.14  E-value=2.1e-05  Score=74.11  Aligned_cols=137  Identities=20%  Similarity=0.198  Sum_probs=95.8

Q ss_pred             CCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995           61 AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN  140 (304)
Q Consensus        61 ~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G  140 (304)
                      -.|.+.|. .  -.-+|--+++.+++..|-                    .+..+.+.+|.|+|.|.+|..+|+.|...|
T Consensus       159 ~~Ipvf~D-D--iqGTasV~lAal~~A~~i--------------------~g~~l~~~kVVv~GAGaAG~~iAkll~~~G  215 (388)
T 1vl6_A          159 MNIPVFHD-D--QQGTAVVVSAAFLNALKL--------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLG  215 (388)
T ss_dssp             CSSCEEEH-H--HHHHHHHHHHHHHHHHHH--------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHT
T ss_pred             cCcceecc-c--cccHHHHHHHHHHHHHHH--------------------hCCCCCCcEEEEECCCHHHHHHHHHHHhCC
Confidence            46888883 1  233344455555555551                    133689999999999999999999999999


Q ss_pred             C-eEEEEcCC----CCCh---------hHHHhcC-ceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEE
Q 021995          141 C-NLLYHDRV----KMDP---------QLEKETG-AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI  205 (304)
Q Consensus       141 ~-~V~~~dr~----~~~~---------~~~~~~g-~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~il  205 (304)
                      . +|+++|++    ....         ..+.+.. .....+|+|.++++|+++-+..     .+++.++.++.|++++++
T Consensus       216 ~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-----p~l~t~emVk~Ma~~pII  290 (388)
T 1vl6_A          216 VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR-----GNILKPEWIKKMSRKPVI  290 (388)
T ss_dssp             CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-----SSCSCHHHHTTSCSSCEE
T ss_pred             CCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-----CCccCHHHHHhcCCCCEE
Confidence            9 79999997    3221         1222221 1124579999999999987742     279999999999999999


Q ss_pred             EEcCCCchhchHHHHHHHHcCC
Q 021995          206 VNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       206 Vn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      +.+++...  |-.=.++.+.|.
T Consensus       291 falSNPt~--E~~p~~a~~~g~  310 (388)
T 1vl6_A          291 FALANPVP--EIDPELAREAGA  310 (388)
T ss_dssp             EECCSSSC--SSCHHHHHHTTC
T ss_pred             EEcCCCCC--CCCHHHHHHhcC
Confidence            99998763  322233344454

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.12  E-value=2.4e-06  Score=77.61  Aligned_cols=96  Identities=14%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHhcC----ceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETG----AKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~~g----~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      +.++.|+++.|+|.|.+|+.++..|...|+ +|++++|+..+.+. +++.+    +.. .+++++..++|+|+.++|...
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~-~~~~~l~~~aDiIInaTp~gm  199 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKA-QAFEQLKQSYDVIINSTSASL  199 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCSCEEEEEECSCCCC
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeE-eeHHHhcCCCCEEEEcCcCCC
Confidence            346889999999999999999999999996 89999997643322 22222    222 256666689999999999753


Q ss_pred             hhh-ccccHHHHhcCCCCCEEEEcCCC
Q 021995          186 KTR-GMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       186 ~t~-~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ... ..+..   ..++++.+++|+.-.
T Consensus       200 ~~~~~~l~~---~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          200 DGELPAIDP---VIFSSRSVCYDMMYG  223 (281)
T ss_dssp             ----CSCCG---GGEEEEEEEEESCCC
T ss_pred             CCCCCCCCH---HHhCcCCEEEEecCC
Confidence            221 12222   235666677776543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.10  E-value=6.8e-06  Score=75.88  Aligned_cols=87  Identities=18%  Similarity=0.297  Sum_probs=65.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHH-hc-----CceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEK-ET-----GAKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~-~~-----g~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ..++++|||.|.+|+.+++.|.. .+ .+|.+|||++.+.+.+. ++     .+. ++++++++ ++|+|++|+|...  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence            46799999999999999998875 33 56999999865443332 22     234 67899999 9999999999643  


Q ss_pred             hccccHHHHhcCCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       .++..   ..+++|..+++++.
T Consensus       200 -pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          200 -PVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             -CCBCG---GGCCTTCEEEECSC
T ss_pred             -ceecH---HHcCCCeEEEECCC
Confidence             34432   46789999999963

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.10  E-value=5.7e-06  Score=66.39  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=58.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCH---Hhh-cCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DTM-LPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l---~el-l~~aDvVi~~~p~~~~t  187 (304)
                      .++++.|+|+|.+|+.+++.|...|++|+++|+++...+...+.+....    .+.   +++ +.++|+|++++|..+. 
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~-   83 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF-   83 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH-
Confidence            4578999999999999999999999999999997654444445554321    122   222 4689999999984333 


Q ss_pred             hccccHHHHhcCCCCCEEE
Q 021995          188 RGMFDKDRIAKMKKGVLIV  206 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilV  206 (304)
                       ++.-....+.+....+++
T Consensus        84 -n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           84 -NLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             -HHHHHHHHHHHCCCCEEE
T ss_pred             -HHHHHHHHHHhCCceEEE
Confidence             232234444455334444

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.07  E-value=1.4e-05  Score=71.83  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCc---eecCCHHhhc-CcCCEEEEcCCCChhhh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGA---KFEEDLDTML-PKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~---~~~~~l~ell-~~aDvVi~~~p~~~~t~  188 (304)
                      .+.|+++.|+|.|.+|+.+++.|...|.+|++++|+..+.+ .++..+.   ....+++++. .++|+|+.++|..... 
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-  194 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-  194 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-
Confidence            57899999999999999999999999999999999754332 2222221   1112344443 5899999999865431 


Q ss_pred             cc--ccHHHHhcCCCCCEEEEcCCCc
Q 021995          189 GM--FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       189 ~~--i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      .+  +..+   .++++.+++|+.-.+
T Consensus       195 ~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          195 DIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             CCCCCCHH---HcCCCCEEEEeccCC
Confidence            11  2222   256788888887553

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.05  E-value=1.3e-05  Score=72.91  Aligned_cols=108  Identities=11%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             CCEEEEEeeChhhHH-HHHHhcc-CCCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~G~IG~~-lA~~l~~-~G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      -.+|||||+|.||+. +++.+.. -+++++ ++|+++...+ .++++|+..+.++++++.+.|+|++++|.....     
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~-----   80 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHY-----   80 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHH-----
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHH-----
Confidence            468999999999996 8888876 478876 7898764333 344567766789999999999999999955332     


Q ss_pred             HHHHhcCCCCCEEE-E-cCCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGVLIV-N-NARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~ilV-n-~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +-....++.|.-++ . -.--.+-+.++|.++.++..+.
T Consensus        81 ~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           81 EIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             HHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence            22223344454333 2 2334455666788777775544

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.04  E-value=6.1e-06  Score=78.12  Aligned_cols=89  Identities=15%  Similarity=0.123  Sum_probs=62.9

Q ss_pred             CEEEEEeeChhhHHHHHHhcc-CCCeEEEEc---CCCCChhH-HHhcC------------c-------eecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHD---RVKMDPQL-EKETG------------A-------KFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~d---r~~~~~~~-~~~~g------------~-------~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||..+|..|.. .|++|.+|+   +++...+. .++.+            .       ....++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            489999999999999999977 599999999   53222222 12111            1       133578888899


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEc
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      +|+|++++|... ...++ ++..+.+++++++|..
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999543 33332 4455567889999984

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.02  E-value=9.1e-06  Score=74.69  Aligned_cols=105  Identities=11%  Similarity=0.184  Sum_probs=69.6

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-h-----------cCceecCCHHhhcCcCCEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-E-----------TGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~-----------~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .++|+|||.|.||..+|..|...|+ +|+.||+++...+... +           ..+....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            3689999999999999999988888 9999999764333210 0           012333566 678999999999842


Q ss_pred             Ch-----------hhhcc---ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          184 TE-----------KTRGM---FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       184 ~~-----------~t~~~---i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      ..           .+..+   +-++ +....+++++|+++.+.-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~-i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEG-VKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHH-HHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHH-HHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           11111   1112 2223569999999987666666666654

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.02  E-value=3.8e-05  Score=70.22  Aligned_cols=107  Identities=17%  Similarity=0.274  Sum_probs=74.0

Q ss_pred             CEEEEEeeChhhHH-HHHHhcc-CCCeEE-EEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~-~G~~V~-~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+|||||+|.||+. +++.+.. -+++++ ++|+++...+. ++.+|+..+++++++..++|+|++++|.....     +
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~-----~   80 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-----D   80 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-----H
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHH-----H
Confidence            48999999999996 8887765 478866 88988765543 44557666678888767899999999955332     2


Q ss_pred             HHHhcCCCCC-EEEEc-CCCchhchHHHHHHHHcCCce
Q 021995          194 DRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~-ilVn~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .....++.|. +++.- .-..+-+.+.|.++.++..+.
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            2333455665 55542 233455667788888776655

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.01  E-value=7.4e-06  Score=75.62  Aligned_cols=107  Identities=9%  Similarity=0.018  Sum_probs=78.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hcC--------------ceecCCHHhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ETG--------------AKFEEDLDTM  170 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g--------------~~~~~~l~el  170 (304)
                      .-.+|+|||.|.||+.+|..+...|++|+.||+++...+...           +.|              +....++++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            346899999999999999999999999999998753221110           001              2345688899


Q ss_pred             cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       171 l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +++||+|+=++|-+-+.+.-+-+++=+.++++++|-..+++  +....|.+.+.
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~  136 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLA  136 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCT
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhcc
Confidence            99999999999988877776666666778999998655544  44456665543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.01  E-value=1.6e-05  Score=73.81  Aligned_cols=69  Identities=14%  Similarity=0.299  Sum_probs=55.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhc--CcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTML--PKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell--~~aDvVi~~~p~~~~  186 (304)
                      .+|||||+|.||+..++.++.. +++++ ++|+++...+ .++.+|+..+.++++++  .+.|+|++++|....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   79 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH   79 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH
Confidence            4899999999999999999877 88865 7788764333 34456777788999999  679999999996543

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.00  E-value=1.1e-05  Score=75.35  Aligned_cols=68  Identities=22%  Similarity=0.307  Sum_probs=55.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+..++.++.. +++++ ++|+++...+.++..|+..+.+++++++  +.|+|++|+|...
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS   77 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            5899999999999999998876 78875 6788765555556678877889999987  7999999999643

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.96  E-value=2.6e-05  Score=70.40  Aligned_cols=94  Identities=16%  Similarity=0.122  Sum_probs=63.5

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHhcC---ceecCCHHhhc-CcCCEEEEcCCCCh
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETG---AKFEEDLDTML-PKCDIVVVNTPLTE  185 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~~g---~~~~~~l~ell-~~aDvVi~~~p~~~  185 (304)
                      +.++.|+++.|+|.|.+|+.++..|...|+ +|++++|+..+.+. +++.+   +.. .+++++- .++|+|+.++|...
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~~~~~l~~~~~DivInaTp~gm  193 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRI-SRYEALEGQSFDIVVNATSASL  193 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEE-ECSGGGTTCCCSEEEECSSGGG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeE-eeHHHhcccCCCEEEECCCCCC
Confidence            346889999999999999999999999996 89999997643332 23332   222 2344443 78999999998643


Q ss_pred             hhh-ccccHHHHhcCCCCCEEEEcC
Q 021995          186 KTR-GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ~t~-~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ... ..+..   +.++++.+++|+.
T Consensus       194 ~~~~~~i~~---~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          194 TADLPPLPA---DVLGEAALAYELA  215 (272)
T ss_dssp             GTCCCCCCG---GGGTTCSEEEESS
T ss_pred             CCCCCCCCH---HHhCcCCEEEEee
Confidence            211 12232   2356677766664

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.94  E-value=1.9e-05  Score=72.62  Aligned_cols=106  Identities=19%  Similarity=0.239  Sum_probs=68.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .+|||||+|.||+.+++.+... +++++ ++|+++...+ .++.+++. +.+++++++  +.|+|++++|......    
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~----   78 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHAD----   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHH----
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHH----
Confidence            4899999999999999998865 78876 6888764333 34456777 789999987  7999999999653321    


Q ss_pred             HHHHhcCCCCCEEEE-c-CCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGVLIVN-N-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn-~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       .....++.|.-++. - ..-.+-+.+.|.++.++..+.
T Consensus        79 -~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (331)
T 4hkt_A           79 -LIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK  116 (331)
T ss_dssp             -HHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence             12223334433332 1 122334445566655554443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.94  E-value=1.7e-05  Score=73.32  Aligned_cols=68  Identities=22%  Similarity=0.365  Sum_probs=54.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+.+++.+... +++++ ++|+++...+ .++.+|...+.+++++++  +.|+|++++|...
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~   77 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTST   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchh
Confidence            4899999999999999998765 78866 7888764333 344567777889999998  8999999999654

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.93  E-value=5.1e-06  Score=78.56  Aligned_cols=83  Identities=19%  Similarity=0.295  Sum_probs=68.8

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCC---eEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~---~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      ...+|.|||. |..|...++.++++|+   .|.++|++..      ..|..    + +.+.++|+||.|+........++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~------~~g~~----~-~~i~~aDivIn~vlig~~aP~Lv  281 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKET------SRGGP----F-DEIPQADIFINCIYLSKPIAPFT  281 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHH------TTCSC----C-THHHHSSEEEECCCCCSSCCCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccc------ccCCc----h-hhHhhCCEEEECcCcCCCCCccc
Confidence            3568999999 9999999999999998   8999997531      11322    2 33559999999998876777899


Q ss_pred             cHHHHhcC-CCCCEEEEcC
Q 021995          192 DKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       192 ~~~~l~~m-k~g~ilVn~~  209 (304)
                      .++.++.| |+|+++||++
T Consensus       282 t~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          282 NMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             CHHHHCCTTCCCCEEEETT
T ss_pred             CHHHHhcCcCCCeEEEEEe
Confidence            99999999 9999999997

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.93  E-value=3.4e-05  Score=62.58  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=74.7

Q ss_pred             CCCEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          116 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       116 ~g~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      .-++|+|||.    |++|+.+++.|+..|++|+..++.....+   -.|...+.+++|+-...|++++++|. +....++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~---i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~   87 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL   87 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc---CCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH
Confidence            3568999999    89999999999999999777766411111   13667777899998899999999996 4555555


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       ++..+ .....++++.+-.    ++++.+..++..+.
T Consensus        88 -~~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           88 -PEVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             -HHHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             -HHHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence             34444 3334666665432    67888888877666

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.92  E-value=1.7e-05  Score=73.66  Aligned_cols=69  Identities=29%  Similarity=0.391  Sum_probs=55.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhccC--CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~--G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      -.+|||||+|.||+..++.+...  +++++ ++|+++...+ .++++|+..+.+++++++  +.|+|++++|...
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   87 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGL   87 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence            35899999999999999998866  78865 7888764333 345568877889999986  7999999999543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.91  E-value=3.5e-05  Score=69.86  Aligned_cols=93  Identities=18%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHhcC-------ceec--CCHHhhcCcCCEEEEcCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETG-------AKFE--EDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~~g-------~~~~--~~l~ell~~aDvVi~~~p  182 (304)
                      .+.|+++.|+|.|.+|+.++..|...|+ +|++++|+..+.+. +++.+       +...  +++++.++++|+|+.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            5889999999999999999999999999 69999997643332 22211       1222  378888899999999998


Q ss_pred             CChhhh--ccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTEKTR--GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~~t~--~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..-...  -.+.   ...++++.+++|+.
T Consensus       204 ~Gm~~~~~~pi~---~~~l~~~~~v~Dlv  229 (283)
T 3jyo_A          204 MGMPAHPGTAFD---VSCLTKDHWVGDVV  229 (283)
T ss_dssp             TTSTTSCSCSSC---GGGCCTTCEEEECC
T ss_pred             CCCCCCCCCCCC---HHHhCCCCEEEEec
Confidence            642211  1122   23456666666664

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.88  E-value=2.2e-05  Score=71.22  Aligned_cols=94  Identities=20%  Similarity=0.177  Sum_probs=63.5

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCCh--hhh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTE--KTR  188 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvVi~~~p~~~--~t~  188 (304)
                      .++.|+++.|+|.|.+|+.++..|...|+ +|++++|+..+.+.. .......++++++ + ++|+|+.++|..-  ...
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~  195 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEG  195 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTT
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCc
Confidence            35789999999999999999999999998 899999976333222 1111222334445 4 8999999998632  111


Q ss_pred             -ccccHHHHhcCCCCCEEEEcCCC
Q 021995          189 -GMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       189 -~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                       -.++.+.   ++++.+++|+.-.
T Consensus       196 ~~pi~~~~---l~~~~~v~DlvY~  216 (282)
T 3fbt_A          196 ESPVDKEV---VAKFSSAVDLIYN  216 (282)
T ss_dssp             CCSSCHHH---HTTCSEEEESCCS
T ss_pred             cCCCCHHH---cCCCCEEEEEeeC
Confidence             1244444   4567777777543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.88  E-value=3e-05  Score=74.53  Aligned_cols=106  Identities=12%  Similarity=0.116  Sum_probs=71.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-------------------hc-CceecCCHHhhcCcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ET-GAKFEEDLDTMLPKCD  175 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-------------------~~-g~~~~~~l~ell~~aD  175 (304)
                      +-.+|+|||+|-+|-.+|..|...|++|+++|.++.+.+...                   .. ......+.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            456999999999999999999989999999998643221111                   11 1344567888899999


Q ss_pred             EEEEcCCCChhhhcccc--------HHHHhcCC---CCCEEEEcCCCchhchHHHHH
Q 021995          176 IVVVNTPLTEKTRGMFD--------KDRIAKMK---KGVLIVNNARGAIMDTQAVVD  221 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~--------~~~l~~mk---~g~ilVn~~rg~~vd~~aL~~  221 (304)
                      ++++|+|......+-.|        +..-+.|+   ++.++|.-|.-.+=-.+.+..
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~  156 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVA  156 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHH
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHH
Confidence            99999974221111111        22223343   688999999877655555544

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.88  E-value=3.6e-05  Score=71.00  Aligned_cols=107  Identities=14%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             CEEEEEeeChhhHHHHHHhc-c-CCCeE-EEEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCChhhhcc
Q 021995          118 KTVGTVGCGRIGKLLLQRLK-P-FNCNL-LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~-~-~G~~V-~~~dr~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~~~~t~~~  190 (304)
                      .+|||||+|.||+..++.++ . -++++ .++|+++...+ .++++|. ..+.+++++++  ++|+|++++|.....   
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~---   85 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP---   85 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH---
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH---
Confidence            48999999999999999887 4 47885 57888754333 3344576 55678999987  699999999954321   


Q ss_pred             ccHHHHhcCCCCCEEEEc--CCCchhchHHHHHHHHcC-Cce
Q 021995          191 FDKDRIAKMKKGVLIVNN--ARGAIMDTQAVVDACSSG-HIA  229 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~--~rg~~vd~~aL~~aL~~g-~i~  229 (304)
                        +...+.++.|.-++.-  .-..+-+.+.|.++.++. .+.
T Consensus        86 --~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           86 --EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             --HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             --HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence              2333445666544321  122334455677777776 555

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.88  E-value=1.5e-05  Score=72.80  Aligned_cols=105  Identities=16%  Similarity=0.226  Sum_probs=67.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCC----------HHhhcCcCCEEEEcCCCChhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED----------LDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~----------l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ++|+|||.|.||..++..|. .|.+|.+++|+....+..++.|.....+          -.+....+|+|+++++... +
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~-~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQ-L   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGG-H
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHH-H
Confidence            68999999999999999999 8999999999754334444455432100          0245678999999998532 2


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      ...+  +.++.+.++. +|.+.-|=-. ++.+.+.+...++
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~~-~e~l~~~~~~~~v  117 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMGH-IHDLKDWHVGHSI  117 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSHH-HHHHHTCCCSCEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCccH-HHHHHHhCCCCcE
Confidence            2222  2333344556 8887776432 2334444444444

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.87  E-value=2.5e-06  Score=77.51  Aligned_cols=96  Identities=11%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc---eecCCHHhhc-CcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---KFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~---~~~~~l~ell-~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++|+|||.|.||..++..|...|.+|.+++|+....+.....|.   ....+..+.+ ..+|+|++++|.. .+...+ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            58999999999999999999889999999997532222222231   1111333444 7899999999954 333333 3


Q ss_pred             HHHhcCCCCCEEEEcCCCchhc
Q 021995          194 DRIAKMKKGVLIVNNARGAIMD  215 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd  215 (304)
                      +.-+.+++++++|.+.-|=-..
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~~  102 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQL  102 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCCG
T ss_pred             HHHHhhCCCCEEEEeccCcccH
Confidence            4445567888999998875443

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.86  E-value=6e-05  Score=61.38  Aligned_cols=101  Identities=12%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             CCEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      -++|+|||.    |.+|..+++.|+..|++|+..++..  .+   -.|...+.+++++....|++++++|. +....++ 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~--~~---i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv-   94 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY--EE---VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV-   94 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC--SE---ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCC--Ce---ECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-
Confidence            579999999    7999999999999999977776643  21   14667777899998899999999996 4444444 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++..+ .....+++..+  .  .++++.+..++..+.
T Consensus        95 ~~~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           95 EQAIK-KGAKVVWFQYN--T--YNREASKKADEAGLI  126 (144)
T ss_dssp             HHHHH-HTCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             HHHHH-cCCCEEEECCC--c--hHHHHHHHHHHcCCE
Confidence            33333 23345665543  2  378888888887766

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.86  E-value=6.4e-05  Score=69.19  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH----h----cCc----eecCC---HHhhcCcCC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK----E----TGA----KFEED---LDTMLPKCD  175 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~----~----~g~----~~~~~---l~ell~~aD  175 (304)
                      +.++.|+++.|+|.|.+|+.++..|...|+ +|++++|+....+.++    +    .+.    ...++   +.+.+.++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            456899999999999999999999999999 8999999832222222    1    111    12223   456678999


Q ss_pred             EEEEcCCCChhhh--c-cccHHHHhcCCCCCEEEEcC
Q 021995          176 IVVVNTPLTEKTR--G-MFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       176 vVi~~~p~~~~t~--~-~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +|+.++|..-...  . .+.  ....++++.+++|+.
T Consensus       229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~Dlv  263 (315)
T 3tnl_A          229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVV  263 (315)
T ss_dssp             EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESC
T ss_pred             EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEec
Confidence            9999998642111  1 120  123456677766664

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.86  E-value=4e-05  Score=70.03  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=49.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhHHH-hc---------Ccee-cCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEK-ET---------GAKF-EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~-~~---------g~~~-~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||.|.||..+|..|...|  .+|.++|++....+... +.         .... ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998777  78999999753322211 11         1222 3466 6789999999999864


Q ss_pred             h
Q 021995          185 E  185 (304)
Q Consensus       185 ~  185 (304)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.84  E-value=1.5e-05  Score=72.89  Aligned_cols=106  Identities=17%  Similarity=0.291  Sum_probs=68.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeE-EEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V-~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+|||||+|.||+.+++.+... ++++ .++|+++...+...+. +..+.+++++++  ++|+|++++|.....     +
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-----~   84 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHA-----E   84 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHH-----H
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHH-----H
Confidence            4899999999999999998765 6775 4888865322222122 445678999985  799999999954321     2


Q ss_pred             HHHhcCCCCC-EEEEc-CCCchhchHHHHHHHHcCCce
Q 021995          194 DRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~-ilVn~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      -..+.++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        85 ~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           85 ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            2233455664 45542 223445556677776665544

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.84  E-value=5.9e-05  Score=69.39  Aligned_cols=102  Identities=15%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeE-EEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V-~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+|||||+|+||+.+++.+... ++++ .++|++... ...  .++..+.++++++.++|+|++++|.....     +..
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~   75 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK--TPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQ   75 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS--SCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc--CCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHH
Confidence            4799999999999999998765 6775 578887533 211  45655678888888899999999854321     334


Q ss_pred             HhcCCCCCEEEEcCCCch-h-ch-HHHHHHHHcCC
Q 021995          196 IAKMKKGVLIVNNARGAI-M-DT-QAVVDACSSGH  227 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~-v-d~-~aL~~aL~~g~  227 (304)
                      ...++.|.-+|...-..+ + +. +.|.++.+++.
T Consensus        76 ~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           76 APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            456677877776554332 2 33 45666666544

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.83  E-value=6e-05  Score=67.16  Aligned_cols=100  Identities=17%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeE-EEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V-~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      +.++|+++|+|+||+.+++.  . ++++ .+|+  .+ ..   ++|+....++++++.++|+|+-|.+.     ..+.+.
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k-~g---elgv~a~~d~d~lla~pD~VVe~A~~-----~av~e~   76 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RI-SK---DIPGVVRLDEFQVPSDVSTVVECASP-----EAVKEY   76 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SS-CC---CCSSSEECSSCCCCTTCCEEEECSCH-----HHHHHH
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--cc-cc---ccCceeeCCHHHHhhCCCEEEECCCH-----HHHHHH
Confidence            56799999999999999998  4 8885 5666  21 11   22666677899999999999888752     133344


Q ss_pred             HHhcCCCCCEEEEcCCCchhch---HHHHHHHHcCCce
Q 021995          195 RIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  229 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~---~aL~~aL~~g~i~  229 (304)
                      ..+.|+.|.-+|-++-|.+.|.   +.|.++.++|.-.
T Consensus        77 ~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           77 SLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            6677899999999999988887   4566666665533

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.83  E-value=3.4e-05  Score=71.71  Aligned_cols=71  Identities=21%  Similarity=0.234  Sum_probs=54.2

Q ss_pred             cCCCEEEEEeeChhhH-HHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          115 LEGKTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~-~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      ..-.+|||||+|.||+ .+++.++.. +++|+ ++|+++...+ .++++|+..+.+++++++  +.|+|++++|...
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~  101 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVL  101 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGG
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHH
Confidence            3446899999999998 788888766 78865 7788753333 345568877789999997  5899999999553

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.81  E-value=3e-05  Score=71.39  Aligned_cols=68  Identities=15%  Similarity=0.131  Sum_probs=53.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+.+++.++.. +++|+ ++|+++...+ .++.+++ ..+.++++++.  +.|+|++++|...
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   79 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQG   79 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGG
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHH
Confidence            5899999999999999999864 77866 6788764433 3445676 46789999987  7999999999654

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.80  E-value=3.7e-05  Score=70.53  Aligned_cols=106  Identities=13%  Similarity=0.224  Sum_probs=67.2

Q ss_pred             EEEEEeeChhhHHH-HHHhccCCCeEE-EEcCCCCChh-HHHhcCce-ecCCHHhhcC--cCCEEEEcCCCChhhhcccc
Q 021995          119 TVGTVGCGRIGKLL-LQRLKPFNCNLL-YHDRVKMDPQ-LEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       119 ~vgIIG~G~IG~~l-A~~l~~~G~~V~-~~dr~~~~~~-~~~~~g~~-~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~  192 (304)
                      +|||||+|.||+.+ ++.+...+++++ ++|+++...+ .++++|.. .+.+++++++  ++|+|++++|.....     
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-----   76 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHR-----   76 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHH-----
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhH-----
Confidence            79999999999998 777665788865 7888764333 34455663 5678999987  499999999954321     


Q ss_pred             HHHHhcCCCCC-EEEEc-CCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~-ilVn~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.....++.|. +++.- .....-+.+.|.++.++..+.
T Consensus        77 ~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           77 EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence            22233445565 33331 122344445566665554443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.80  E-value=5.4e-05  Score=69.60  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCce-ecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~~-~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+.+++.++.. +++++ ++|+++...+ .++++++. .+.++++++.  +.|+|++++|...
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   79 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQD   79 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGG
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence            5899999999999999888754 56655 7788775443 34455663 6789999998  7999999999543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.78  E-value=5.9e-05  Score=69.11  Aligned_cols=107  Identities=14%  Similarity=0.185  Sum_probs=68.6

Q ss_pred             CEEEEEeeChhhH-HHHHHhccC-CCeEEEEcCCCCChh-HHHhcCcee-cCCHHhhc-CcCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGK-LLLQRLKPF-NCNLLYHDRVKMDPQ-LEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~-~lA~~l~~~-G~~V~~~dr~~~~~~-~~~~~g~~~-~~~l~ell-~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .+|||||+|.||+ .+++.+... +++++++|+++...+ .++++|+.. +.+..+++ .++|+|++++|.....     
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~-----   77 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS-----   77 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH-----
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHH-----
Confidence            3799999999998 488888764 788779998764333 334556643 33445555 6899999999944221     


Q ss_pred             HHHHhcCCCCC-EEEEc-CCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~-ilVn~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +-..+.++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        78 ~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           78 TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            22223445554 55542 223344566788877776655

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.77  E-value=3.4e-05  Score=62.87  Aligned_cols=90  Identities=12%  Similarity=0.064  Sum_probs=58.0

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHH---hcCceec-------CCHHhh-cCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEK---ETGAKFE-------EDLDTM-LPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~---~~g~~~~-------~~l~el-l~~aDvVi~~~p~~  184 (304)
                      .+++.|+|+|.+|+.+++.|...|++|+++++++ ...+...   ..|+...       +.+++. +.++|+|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            4689999999999999999999999999999863 1111111   1233211       123444 78999999999865


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEc
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      +.+  +.-....+.+.+...+|..
T Consensus        83 ~~n--~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           83 ADN--AFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHH--HHHHHHHHHHTSSSCEEEE
T ss_pred             HHH--HHHHHHHHHHCCCCEEEEE
Confidence            443  2224455555444444443

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.77  E-value=4.9e-05  Score=70.26  Aligned_cols=68  Identities=24%  Similarity=0.381  Sum_probs=53.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+.+++.+... +++++ ++|+++...+ .++.+++ ..+.+++++++  ++|+|++++|...
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   76 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNT   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcc
Confidence            4899999999999999998764 77866 6888764333 3445665 36789999988  7999999999543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.75  E-value=5.8e-05  Score=68.29  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=65.0

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCc---------eecCCHHhhcCcCCEEEEcCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA---------KFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~---------~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++.|+++.|+|.|.+|+++++.|...| +|++++|+..+.+.. .+.+.         ....++.+.+.++|+|+.++|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            578999999999999999999999999 999999975332221 11110         0112335667889999999986


Q ss_pred             Chhhh---ccc-cHHHHhcCCCCCEEEEcCCC
Q 021995          184 TEKTR---GMF-DKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~~~t~---~~i-~~~~l~~mk~g~ilVn~~rg  211 (304)
                      .....   ..+ +   .+.++++.+++|+...
T Consensus       204 ~~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          204 GMYPNIDVEPIVK---AEKLREDMVVMDLIYN  232 (287)
T ss_dssp             TCTTCCSSCCSSC---STTCCSSSEEEECCCS
T ss_pred             CCCCCCCCCCCCC---HHHcCCCCEEEEeeeC
Confidence            53210   012 2   3457888999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.75  E-value=5.8e-05  Score=69.88  Aligned_cols=100  Identities=19%  Similarity=0.155  Sum_probs=66.3

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHh-------c----CceecCCHHhhcCcCCEEEEcC--
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------T----GAKFEEDLDTMLPKCDIVVVNT--  181 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~-------~----g~~~~~~l~ell~~aDvVi~~~--  181 (304)
                      .++|+|||.|.+|..+|..|...|+ +|..||++....+. ...       .    .+....++++.+++||+|+++.  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            3689999999999999999987787 89999997643332 110       1    1233468888899999999998  


Q ss_pred             CCChhh------hcc-------ccHHH---HhcCCCCCEEEEcCCCchhch
Q 021995          182 PLTEKT------RGM-------FDKDR---IAKMKKGVLIVNNARGAIMDT  216 (304)
Q Consensus       182 p~~~~t------~~~-------i~~~~---l~~mk~g~ilVn~~rg~~vd~  216 (304)
                      |..+..      +-.       +-.+.   +....|++++|+.+-..-+..
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t  139 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMV  139 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHH
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHH
Confidence            643321      110       01122   223358999999876544433

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.74  E-value=0.00011  Score=69.38  Aligned_cols=137  Identities=18%  Similarity=0.152  Sum_probs=97.3

Q ss_pred             CCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995           61 AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN  140 (304)
Q Consensus        61 ~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G  140 (304)
                      .+|+|.|. .  -.-+|--+++.+++.+|-                    .+..+...+|.|+|.|..|..+|+.+..+|
T Consensus       155 ~~ipvf~D-D--iqGTa~V~lAall~al~l--------------------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~G  211 (398)
T 2a9f_A          155 CHIPVFHD-D--QHGTAIVVLAAIFNSLKL--------------------LKKSLDEVSIVVNGGGSAGLSITRKLLAAG  211 (398)
T ss_dssp             CSSCEEEH-H--HHHHHHHHHHHHHHHHHT--------------------TTCCTTSCEEEEECCSHHHHHHHHHHHHHT
T ss_pred             CCcceecc-h--hhhHHHHHHHHHHHHHHH--------------------hCCCCCccEEEEECCCHHHHHHHHHHHHcC
Confidence            36899883 1  234555667777777761                    244688999999999999999999999999


Q ss_pred             C-eEEEEcCCC-C-----------ChhHHHhcC-ceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE
Q 021995          141 C-NLLYHDRVK-M-----------DPQLEKETG-AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  206 (304)
Q Consensus       141 ~-~V~~~dr~~-~-----------~~~~~~~~g-~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV  206 (304)
                      . +|+.+|++. .           +...+.... .....+|+|.++.+|+++=+.     ..+++.++.++.|+++++++
T Consensus       212 a~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~~pIIf  286 (398)
T 2a9f_A          212 ATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAARPVIF  286 (398)
T ss_dssp             CCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCSSCEEE
T ss_pred             CCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCCCCEEE
Confidence            9 899999863 1           011111111 111346999999999987553     24899999999999999999


Q ss_pred             EcCCCchhchHHHHHHHHcCC
Q 021995          207 NNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       207 n~~rg~~vd~~aL~~aL~~g~  227 (304)
                      .+|+...  |-.=.++.+.|.
T Consensus       287 alsNPt~--E~~pe~a~~~g~  305 (398)
T 2a9f_A          287 AMANPIP--EIYPDEALEAGA  305 (398)
T ss_dssp             ECCSSSC--SSCHHHHHTTTC
T ss_pred             ECCCCCc--cCCHHHHHHhCC
Confidence            9999764  333333444455

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.74  E-value=5.8e-05  Score=69.41  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=68.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHH-hc--------Cce-ecCCHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK-ET--------GAK-FEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~-~~--------g~~-~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ++|+|||.|.||..++..|...|+  +|.++|+++...+... ..        ... ...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            479999999999999999988888  9999999753222211 11        111 1134 356789999999998543


Q ss_pred             hh---h--------ccccHHHHhcC---CCCCEEEEcCCCchhchHHHHHHH--HcCCceEE
Q 021995          186 KT---R--------GMFDKDRIAKM---KKGVLIVNNARGAIMDTQAVVDAC--SSGHIAGY  231 (304)
Q Consensus       186 ~t---~--------~~i~~~~l~~m---k~g~ilVn~~rg~~vd~~aL~~aL--~~g~i~ga  231 (304)
                      ..   +        .++ .+.++.+   .+++++|+++.+.-+....+.+..  ...++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            10   0        011 2332222   578899998765544333333322  34455544

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.72  E-value=0.00012  Score=67.31  Aligned_cols=107  Identities=8%  Similarity=0.084  Sum_probs=69.0

Q ss_pred             CEEEEEeeChhhH-HHHHHhccCCCeE-EEEcCCCCChhH-HHhc-CceecCCHHhhcC--cCCEEEEcCCCChhhhccc
Q 021995          118 KTVGTVGCGRIGK-LLLQRLKPFNCNL-LYHDRVKMDPQL-EKET-GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       118 ~~vgIIG~G~IG~-~lA~~l~~~G~~V-~~~dr~~~~~~~-~~~~-g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i  191 (304)
                      .+|||||+|.+|. .+++.++..|+++ .++|+++...+. ++.+ +...+.+++++++  +.|+|++++|.....    
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~----   80 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRA----   80 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHH----
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHH----
Confidence            5899999999996 6777776668885 588988755443 4445 4566789999997  689999999954321    


Q ss_pred             cHHHHhcCCCCC-EEEEc-CCCchhchHHHHHHHHcCCce
Q 021995          192 DKDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 ~~~~l~~mk~g~-ilVn~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       +...+.++.|. +++.- .--.+-+.++|.++.++..+.
T Consensus        81 -~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~  119 (336)
T 2p2s_A           81 -ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRK  119 (336)
T ss_dssp             -HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCC
T ss_pred             -HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence             22333445554 44432 122334455566665554443

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.70  E-value=5.7e-05  Score=69.82  Aligned_cols=68  Identities=22%  Similarity=0.313  Sum_probs=52.9

Q ss_pred             CEEEEEeeChhhHHHHHHhc-c-CCCeEE-EEcCCCCChh-HHHhcC--ceecCCHHhhcCc--CCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMDPQ-LEKETG--AKFEEDLDTMLPK--CDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~-~-~G~~V~-~~dr~~~~~~-~~~~~g--~~~~~~l~ell~~--aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+..++.+. . -+++++ ++|+++...+ .++++|  ...++++++++++  .|+|++++|...
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   78 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPA   78 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchh
Confidence            48999999999999999887 5 478866 7788754333 344567  5677899999876  999999999543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.69  E-value=0.00012  Score=67.66  Aligned_cols=112  Identities=14%  Similarity=0.227  Sum_probs=68.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-h-------c----CceecCCHHhhcCcCCEEEEcC--C
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-E-------T----GAKFEEDLDTMLPKCDIVVVNT--P  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~-------~----g~~~~~~l~ell~~aDvVi~~~--p  182 (304)
                      ++|+|||.|.+|..+|..+...|+ +|..||++....+... .       .    .+....++ +.+++||+|++++  |
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            699999999999999999988888 9999999764333211 0       0    12333567 7789999999998  4


Q ss_pred             CChh---------hhccccHHH---HhcCCCCCEEEEcCCCchhchHHHHHHH--HcCCceEE
Q 021995          183 LTEK---------TRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDAC--SSGHIAGY  231 (304)
Q Consensus       183 ~~~~---------t~~~i~~~~---l~~mk~g~ilVn~~rg~~vd~~aL~~aL--~~g~i~ga  231 (304)
                      ..+.         +..++ .+.   +....|++++|+++...-+....+.+.-  ...++.|.
T Consensus        94 ~k~g~tr~dl~~~n~~i~-~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIV-GSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHH-HHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCCCCchhhHHhhhHHHH-HHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEe
Confidence            3221         11111 122   2223488999988664333322222221  24455555

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.69  E-value=0.0001  Score=68.16  Aligned_cols=68  Identities=21%  Similarity=0.202  Sum_probs=50.4

Q ss_pred             CEEEEEeeChhhHH-HHH-Hhc-cCCCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcCc--CCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKL-LLQ-RLK-PFNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK--CDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~-~l~-~~G~~V~-~~dr~~~~~~~~~~~-g~~~~~~l~ell~~--aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+. .+. .+. .-+++++ ++|+++...+...+. ++..+.++++++..  .|+|++++|...
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS   77 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGG
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHH
Confidence            47999999999996 555 434 3478876 888876544443333 56677899999986  899999999553

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.68  E-value=8.8e-05  Score=67.51  Aligned_cols=80  Identities=21%  Similarity=0.325  Sum_probs=65.7

Q ss_pred             cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.++.||++.|||-++ +|+.+|..|...|+.|+.+....              .++.+.+++||+|+.++.-    .+
T Consensus       173 ~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~----p~  234 (303)
T 4b4u_A          173 NNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGK----AE  234 (303)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCS----TT
T ss_pred             HCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCC----CC
Confidence            35588999999999876 79999999999999999886522              3788999999999999863    25


Q ss_pred             cccHHHHhcCCCCCEEEEcCCC
Q 021995          190 MFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ++..+   ..|+|+++||+|--
T Consensus       235 ~i~~d---~vk~GavVIDVGin  253 (303)
T 4b4u_A          235 LIQKD---WIKQGAVVVDAGFH  253 (303)
T ss_dssp             CBCGG---GSCTTCEEEECCCB
T ss_pred             ccccc---cccCCCEEEEecee
Confidence            66655   46999999999853

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.68  E-value=8.1e-05  Score=69.35  Aligned_cols=70  Identities=23%  Similarity=0.275  Sum_probs=54.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhc-c-CCCeEE-EEcCCCCChh-HHHhcC--ceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMDPQ-LEKETG--AKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~-~-~G~~V~-~~dr~~~~~~-~~~~~g--~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .-.+|||||+|.||+..++.+. . -+++++ ++|+++...+ .++++|  ...+.++++++.  +.|+|++++|...
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   99 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA   99 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            3458999999999999999887 4 478866 7898775443 344566  567789999987  4899999999653

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.67  E-value=6e-05  Score=68.86  Aligned_cols=101  Identities=19%  Similarity=0.301  Sum_probs=63.2

Q ss_pred             CEEEEEeeChhhHHHHHHhcc-CCCeEE-EEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~~~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+|||||+|+||+.+++.++. -++++. ++|+++...+.   .|+.  .++++.+. .++|+|++|+|.....     +
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~   80 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----R   80 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----H
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----H
Confidence            589999999999999999875 478876 68887643322   4543  24566555 7899999999843221     2


Q ss_pred             HHHhcCCCCCEEEEcCC--C-chhchHHHHHHHHcCC
Q 021995          194 DRIAKMKKGVLIVNNAR--G-AIMDTQAVVDACSSGH  227 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~r--g-~~vd~~aL~~aL~~g~  227 (304)
                      ...+.++.|.-+++..-  + .+.+...|.++.++..
T Consensus        81 ~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           81 TALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             HHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            33345566777776532  2 2334455666666544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.66  E-value=0.00017  Score=66.02  Aligned_cols=65  Identities=23%  Similarity=0.304  Sum_probs=48.3

Q ss_pred             CEEEEEeeChhhHHHHHHhcc--CCCeEEEEcCCCCChhHHH---hc-------C--ceecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK---ET-------G--AKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~--~G~~V~~~dr~~~~~~~~~---~~-------g--~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||.|.+|..+|..|..  +|.+|..+|+++...+...   ..       .  +....++++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            479999999999999999875  5899999999764333211   11       1  223356766 8999999999974

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.66  E-value=5.2e-05  Score=65.42  Aligned_cols=91  Identities=18%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCceec----C---CHHhh-cCcCCEEEEcCCCChhhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE----E---DLDTM-LPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~----~---~l~el-l~~aDvVi~~~p~~~~t~  188 (304)
                      ++|.|+|+|.+|+.+++.|...|++|+++|+++...+.. ...+....    .   .++++ +.++|+|+++++....+ 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN-   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH-
Confidence            479999999999999999999999999999876443332 23343221    1   23343 78899999999865443 


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       .+-......+.+...+|-..+
T Consensus        80 -~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           80 -LFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             -HHHHHHHHHTSCCCEEEECCC
T ss_pred             -HHHHHHHHHHcCCCeEEEEEe
Confidence             222344444434444554433

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.64  E-value=0.00032  Score=67.29  Aligned_cols=111  Identities=16%  Similarity=0.235  Sum_probs=73.5

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE--------cCCCCChhH------------------HHhcCceecC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQL------------------EKETGAKFEE  165 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~--------dr~~~~~~~------------------~~~~g~~~~~  165 (304)
                      +.+|.|+||.|-|+|++|..+|++|...|++|++.        |+.....+.                  ..+.+....+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            44789999999999999999999999999998754        333322221                  1122333332


Q ss_pred             CHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCC--CEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          166 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG--VLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       166 ~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g--~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .-+=+-..||+++-|.     +.+.|+.+..+.++.+  .++++.+.+++-.+ + .+.|.+..|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE
Confidence            1111234799998876     3467888888888643  57777777775333 2 3566666665

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.64  E-value=0.00015  Score=67.78  Aligned_cols=105  Identities=12%  Similarity=0.221  Sum_probs=65.4

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCChhhhccc
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i  191 (304)
                      .+|||||+|.||+. .+..++.. +++|+ ++|+++..  ..... +...+.++++++.  +.|+|++|+|.....    
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~----   81 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEK--VKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHA----   81 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHH--HHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHH----
Confidence            48999999999997 67777655 78865 77876522  22233 5666789999998  789999999954332    


Q ss_pred             cHHHHhcCCCCCEEEEcC--CCchhchHHHHHHHHcCCce
Q 021995          192 DKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~--rg~~vd~~aL~~aL~~g~i~  229 (304)
                       +-..+.++.|.-++.--  --.+-+.++|.++.++..+.
T Consensus        82 -~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  120 (364)
T 3e82_A           82 -PLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL  120 (364)
T ss_dssp             -HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence             22223344444444322  22334445555555554443

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.63  E-value=0.0014  Score=59.85  Aligned_cols=130  Identities=16%  Similarity=0.118  Sum_probs=91.8

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++                    | .+.|.+|+++|= +++.++++..
T Consensus       117 la~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~gl~ia~vGD~~rva~Sl~~~  173 (301)
T 2ef0_A          117 LARHAKVPVVNALSDRAHPL--QALADLLTLKEVF--------------------G-GLAGLEVAWVGDGNNVLNSLLEV  173 (301)
T ss_dssp             HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HHHHCCCCEEeCCCCccCch--HHHHHHHHHHHHh--------------------C-CcCCcEEEEECCCchhHHHHHHH
Confidence            45567799999766443332  3455555554421                    1 488999999996 8899999999


Q ss_pred             hccCCCeEEEEcCCCC-Ch-hHHHhcCceecCCHHhhcCcCCEEEEcCCCC-------hh-----hhccccHHHHhcCCC
Q 021995          136 LKPFNCNLLYHDRVKM-DP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-------EK-----TRGMFDKDRIAKMKK  201 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~-~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~-------~~-----t~~~i~~~~l~~mk~  201 (304)
                      +..+|++|.+..|... +. +......+....++++.++++|+|....=..       .+     ...-++.+.++.+|+
T Consensus       174 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~  253 (301)
T 2ef0_A          174 APLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRP  253 (301)
T ss_dssp             HHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCT
T ss_pred             HHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCC
Confidence            9999999999998653 22 2222234666789999999999998743210       01     124578899999999


Q ss_pred             CCEEEEcC
Q 021995          202 GVLIVNNA  209 (304)
Q Consensus       202 g~ilVn~~  209 (304)
                      +++|..+.
T Consensus       254 ~ai~mHpl  261 (301)
T 2ef0_A          254 EGVFLHCL  261 (301)
T ss_dssp             TCEEEECS
T ss_pred             CcEEECCC
Confidence            99998886

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.63  E-value=0.00012  Score=70.30  Aligned_cols=111  Identities=17%  Similarity=0.151  Sum_probs=80.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCC---eEEEEc----CC--CCChhH---HH----h----cCce-ecCCHHhh
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHD----RV--KMDPQL---EK----E----TGAK-FEEDLDTM  170 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~---~V~~~d----r~--~~~~~~---~~----~----~g~~-~~~~l~el  170 (304)
                      +..+.++++.|+|.|..|+.+++.|...|.   +|+++|    |+  ..+.+.   ..    .    .+.. ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            346889999999999999999999999998   799999    76  211111   11    1    1110 13578899


Q ss_pred             cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       171 l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      ++++|+|+.+.|..+   +++.++.++.|+++.++++++...  .+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            999999999988521   355567788899999999995543  4555666666654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.63  E-value=0.00011  Score=68.05  Aligned_cols=92  Identities=16%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-CCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++.+.+.++++|+... .+.+++.+..|+|+-++.....     -..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence            5889999999999999999999999999999998888888888887532 3444444579999988874322     257


Q ss_pred             HHhcCCCCCEEEEcCCCc
Q 021995          195 RIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~  212 (304)
                      .++.++++..++.++...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            788899999999997543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.63  E-value=0.00018  Score=63.77  Aligned_cols=83  Identities=7%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      .+|+|+|+|+||+.+++.+...+.+++ ++|++..     ...|+..++++++++ ++|+++-+.+. +.+     .+.+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~-----~~~gv~v~~dl~~l~-~~DVvIDft~p-~a~-----~~~~   71 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK-----ATTPYQQYQHIADVK-GADVAIDFSNP-NLL-----FPLL   71 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCH-HHH-----HHHH
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcc-----ccCCCceeCCHHHHh-CCCEEEEeCCh-HHH-----HHHH
Confidence            589999999999999999986655755 5788653     235676778899988 99998854431 122     2334


Q ss_pred             hcCCCCCEEEEcCCCch
Q 021995          197 AKMKKGVLIVNNARGAI  213 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~  213 (304)
                      . ++.|.-+|....|-.
T Consensus        72 ~-l~~g~~vVigTTG~s   87 (243)
T 3qy9_A           72 D-EDFHLPLVVATTGEK   87 (243)
T ss_dssp             T-SCCCCCEEECCCSSH
T ss_pred             H-HhcCCceEeCCCCCC
Confidence            4 778877777767743

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.62  E-value=3.9e-05  Score=73.24  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CC---HHhh-cCcCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~---l~el-l~~aDvVi~~~p~~~~t~  188 (304)
                      +.+|.|+|+|.+|+.+++.|...|++|+++|+++...+..+..|...+    .+   |+++ +.++|+|+++++..+.+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            457999999999999999999999999999998755555566665321    12   3333 688999999998654433


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .+  ....+.+.+...+|--++
T Consensus        84 ~i--~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEEEES
T ss_pred             HH--HHHHHHhCCCCeEEEEEC
Confidence            33  455566667655554443

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.60  E-value=0.0018  Score=59.30  Aligned_cols=130  Identities=13%  Similarity=0.140  Sum_probs=91.1

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++-.+++|.|.-+....++  .+|+-++.+.+++                    | .+.|.+|+++|=|  ++.++++.
T Consensus       111 lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~gl~va~vGD~~~rva~Sl~~  167 (307)
T 2i6u_A          111 MASVATVPVINALSDEFHPC--QVLADLQTIAERK--------------------G-ALRGLRLSYFGDGANNMAHSLLL  167 (307)
T ss_dssp             HHHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHhhCCCCEEcCCCCCcCcc--HHHHHHHHHHHHh--------------------C-CcCCeEEEEECCCCcCcHHHHHH
Confidence            45567899999765443332  3455555554421                    1 4789999999986  99999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-H---HH----hcC--ceecCCHHhhcCcCCEEEEcCCC-------Chh-----hhccc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-L---EK----ETG--AKFEEDLDTMLPKCDIVVVNTPL-------TEK-----TRGMF  191 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~---~~----~~g--~~~~~~l~ell~~aDvVi~~~p~-------~~~-----t~~~i  191 (304)
                      .+..+|++|.+..|... +.+ .   ++    +.|  +....++++.++++|+|....=.       .++     ...-+
T Consensus       168 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v  247 (307)
T 2i6u_A          168 GGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQL  247 (307)
T ss_dssp             HHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCB
T ss_pred             HHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCC
Confidence            99999999999998653 222 2   11    445  44568999999999999884320       000     12456


Q ss_pred             cHHHHhcCCCCCEEEEcC
Q 021995          192 DKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~  209 (304)
                      +.+.++.+|++++|..+.
T Consensus       248 ~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          248 NSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CHHHHHHSCTTCEEEECS
T ss_pred             CHHHHhhcCCCcEEECCC
Confidence            888999999999988775

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.59  E-value=0.00013  Score=66.96  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHH----Hhc----Cc--e--ecCCH---HhhcCcCC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE----KET----GA--K--FEEDL---DTMLPKCD  175 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~----~~~----g~--~--~~~~l---~ell~~aD  175 (304)
                      +.++.|+++.|+|.|.+|+.++..|...|+ +|++++|+....+.+    ++.    +.  .  ...++   .+.+.++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            446889999999999999999999999998 799999983321211    111    21  1  22343   45678899


Q ss_pred             EEEEcCCCC
Q 021995          176 IVVVNTPLT  184 (304)
Q Consensus       176 vVi~~~p~~  184 (304)
                      +||.++|..
T Consensus       223 iIINaTp~G  231 (312)
T 3t4e_A          223 ILTNGTKVG  231 (312)
T ss_dssp             EEEECSSTT
T ss_pred             EEEECCcCC
Confidence            999999964

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.58  E-value=5.9e-05  Score=71.41  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             EEEEEeeChhhHHHHHHhccCC--------CeEEEEcCCCCC--hhHHH---h--------------cCceecCCHHhhc
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKMD--PQLEK---E--------------TGAKFEEDLDTML  171 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G--------~~V~~~dr~~~~--~~~~~---~--------------~g~~~~~~l~ell  171 (304)
                      +|+|||.|..|.++|..|...|        .+|..|.|.+..  ....+   .              .++....++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999997544        459999876431  11111   1              1234457899999


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  213 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~  213 (304)
                      +++|+|++++|. ...+.++ ++....++++..+|+++-|=-
T Consensus       116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSCE
T ss_pred             hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEeccccc
Confidence            999999999994 2333332 455566789999999998843

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.58  E-value=0.00019  Score=64.57  Aligned_cols=90  Identities=19%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh----c
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR----G  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~-~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~----~  189 (304)
                      .++++.|+|.|.+|+.++..|...|+ +|++++|+..+. +.+++++.....++.  +.++|+|+.++|......    .
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            46799999999999999999999998 699999986432 233344443222232  468999999999653211    1


Q ss_pred             -cccHHHHhcCCCCCEEEEcCC
Q 021995          190 -MFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       190 -~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       .+..+.   ++++.+++|+.-
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY  214 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVA  214 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCC
T ss_pred             CCCCHHH---cCCCCEEEEeec
Confidence             123232   344666666654

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.57  E-value=0.00015  Score=66.77  Aligned_cols=68  Identities=13%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC---CeE-EEEcCCCCCh-hHHHhcCc-eecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN---CNL-LYHDRVKMDP-QLEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G---~~V-~~~dr~~~~~-~~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .++||||+|.||+..++.++..+   +++ .++|++.... +.++++++ ..+.++++++.  +.|+|++++|...
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   78 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQ   78 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence            48999999999999999988653   464 4678865333 34455676 46789999987  6999999999543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.57  E-value=6.2e-05  Score=70.26  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=69.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++....+.+. ++|+...   .+   +.++....|+|+.++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            689999999999999999999999999999998765555555 6675422   22   33445578999998874322  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                         -...++.|+++..+|+++..
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCCC
T ss_pred             ---HHHHHHHHhcCCEEEEEccC
Confidence               25677889999999999853

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.57  E-value=0.00017  Score=67.15  Aligned_cols=107  Identities=18%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeE-EEEcCCCCChh-HHHhcC----ceecCCHHhhcC--cCCEEEEcCCCChhhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQ-LEKETG----AKFEEDLDTMLP--KCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V-~~~dr~~~~~~-~~~~~g----~~~~~~l~ell~--~aDvVi~~~p~~~~t~  188 (304)
                      .+|||||+|.||+.+++.+... ++++ .++|+++...+ .++++|    ...+.+++++++  +.|+|++++|..... 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence            4899999999999999988764 6775 47888653322 334455    355678999986  599999999954321 


Q ss_pred             ccccHHHHhcCCCCCEEEEcC--CCchhchHHHHHHHHcCCce
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~--rg~~vd~~aL~~aL~~g~i~  229 (304)
                          +-..+.++.|.-++.--  --.+-+.++|.++.++..+.
T Consensus        86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                23334566676444321  23344557788888877665

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.57  E-value=0.00035  Score=64.69  Aligned_cols=67  Identities=18%  Similarity=0.344  Sum_probs=51.1

Q ss_pred             CEEEEEeeChhhH-HHHHHhccC-CCeEE-EEcCCCCChhHHHh---cCceecCCHHhhcCc--CCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQLEKE---TGAKFEEDLDTMLPK--CDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~-~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~---~g~~~~~~l~ell~~--aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+ ..+..++.. +++|+ ++|++ .....+++   .++..+.++++++..  .|+|++++|...
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHT   77 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHH
Confidence            3899999999998 577777655 78865 77876 44444444   366777899999986  899999999643

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.54  E-value=9.8e-05  Score=64.32  Aligned_cols=89  Identities=17%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----C---CHHhh-cCcCCEEEEcCCCChhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----E---DLDTM-LPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~---~l~el-l~~aDvVi~~~p~~~~t  187 (304)
                      ..+++.|+|+|.+|+.+++.|...|+ |+++++++...+... .++...    .   .++++ +.++|.|++++|..+.+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   85 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET   85 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH
Confidence            34589999999999999999999999 999998764433333 443321    1   23333 78999999999865433


Q ss_pred             hccccHHHHhcCCCC-CEEEEc
Q 021995          188 RGMFDKDRIAKMKKG-VLIVNN  208 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g-~ilVn~  208 (304)
                        +.-....+.+.++ .+++.+
T Consensus        86 --~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           86 --IHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             --HHHHHHHHHHCSSSEEEEEC
T ss_pred             --HHHHHHHHHHCCCCeEEEEE
Confidence              3334555666776 444444

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.53  E-value=0.0013  Score=60.21  Aligned_cols=130  Identities=15%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++..+|+|.|.-+....++  .+|+-++.+.++.                    | .+.|.+|+++|= +++.++++..
T Consensus       117 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~glkva~vGD~~~va~Sl~~~  173 (309)
T 4f2g_A          117 FAENSRVPVINGLTNEYHPC--QVLADIFTYYEHR--------------------G-PIRGKTVAWVGDANNMLYTWIQA  173 (309)
T ss_dssp             HHHTCSSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEECCCCccCcH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEECCCcchHHHHHHH
Confidence            34567899999876544332  2344444444321                    1 478999999994 6789999999


Q ss_pred             hccCCCeEEEEcCCCC-Chh-H-HHhc--CceecCCHHhhcCcCCEEEEcC----CC---Ch-----hhhccccHHHHhc
Q 021995          136 LKPFNCNLLYHDRVKM-DPQ-L-EKET--GAKFEEDLDTMLPKCDIVVVNT----PL---TE-----KTRGMFDKDRIAK  198 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~-~-~~~~--g~~~~~~l~ell~~aDvVi~~~----p~---~~-----~t~~~i~~~~l~~  198 (304)
                      +..+|++|.+..|... +.+ . +++.  ++....++++.++++|+|..-.    ..   .+     -...-++.+.++.
T Consensus       174 ~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~  253 (309)
T 4f2g_A          174 ARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSH  253 (309)
T ss_dssp             HHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTT
T ss_pred             HHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHh
Confidence            9999999999987542 222 1 1122  3445679999999999998754    11   00     1124578999999


Q ss_pred             CCCCCEEEEcC
Q 021995          199 MKKGVLIVNNA  209 (304)
Q Consensus       199 mk~g~ilVn~~  209 (304)
                      +|++++|..+.
T Consensus       254 a~~~ai~mH~l  264 (309)
T 4f2g_A          254 ANSDALFMHCL  264 (309)
T ss_dssp             SCTTCEEEECS
T ss_pred             cCCCeEEECCC
Confidence            99999998875

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.53  E-value=0.00099  Score=61.65  Aligned_cols=131  Identities=14%  Similarity=0.110  Sum_probs=91.6

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++                    |..+.|.+|+++|=|  +++++++.
T Consensus       117 lA~~s~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~--------------------g~~l~gl~va~vGD~~~~va~Sl~~  174 (335)
T 1dxh_A          117 LAKFAGVPVFNGLTDEYHPT--QMLADVLTMREHS--------------------DKPLHDISYAYLGDARNNMGNSLLL  174 (335)
T ss_dssp             HHHHSSSCEEEEECSSCCHH--HHHHHHHHHHHTC--------------------SSCGGGCEEEEESCCSSHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHc--------------------CCCcCCeEEEEecCCccchHHHHHH
Confidence            45566899999765433332  3455556555532                    214789999999986  99999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-H---HH----hcC--ceecCCHHhhcCcCCEEEEcCCC--C------hh-----hhcc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-L---EK----ETG--AKFEEDLDTMLPKCDIVVVNTPL--T------EK-----TRGM  190 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~---~~----~~g--~~~~~~l~ell~~aDvVi~~~p~--~------~~-----t~~~  190 (304)
                      .+..+|++|.+..|... +.+ .   ++    +.|  +....++++.++++|+|....=.  .      .+     ...-
T Consensus       175 ~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~  254 (335)
T 1dxh_A          175 IGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQ  254 (335)
T ss_dssp             HHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGC
T ss_pred             HHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcce
Confidence            99999999999988642 222 2   11    445  44568999999999999874321  0      11     1245


Q ss_pred             ccHHHHhcC-CCCCEEEEcC
Q 021995          191 FDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~m-k~g~ilVn~~  209 (304)
                      ++.+.++.+ |++++|..+.
T Consensus       255 v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          255 VNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             BCHHHHHTTCCSSCEEEECS
T ss_pred             eCHHHHHhccCCCeEEECCC
Confidence            788999999 9999998875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.53  E-value=0.00017  Score=66.70  Aligned_cols=90  Identities=17%  Similarity=0.212  Sum_probs=66.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVi~~~p~  183 (304)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.++++.+.+.++++|+...     .++.+.+      ...|+|+.++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            78999999999999999999999999 89999987666666777775421     1232222      258999888874


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .+.     -.+.++.|+++..+|.++.
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEcc
Confidence            222     1466777888888888863

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.51  E-value=0.0017  Score=59.18  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=91.0

Q ss_pred             HHHhCCcEEEEc-CCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee---ChhhHHH
Q 021995           57 AAAAAGLTVAEV-TGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC---GRIGKLL  132 (304)
Q Consensus        57 ~~~~~gI~v~n~-~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~---G~IG~~l  132 (304)
                      .++-.+|+|.|. -|....++  .+|+-++.+.+++                    | .+.|.+|+++|=   |++.+++
T Consensus       111 la~~~~vPVINaG~g~~~HPt--Q~LaDl~Ti~e~~--------------------g-~l~gl~va~vGD~~~~rva~Sl  167 (299)
T 1pg5_A          111 ASEISDIPVINAGDGKHEHPT--QAVIDIYTINKHF--------------------N-TIDGLVFALLGDLKYARTVNSL  167 (299)
T ss_dssp             HHHHCSSCEEEEEETTTBCHH--HHHHHHHHHHHHH--------------------S-CSTTCEEEEEECCSSCHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEECCCCCCchHHHH
Confidence            455677999998 54443332  2344445554421                    1 478999999997   5999999


Q ss_pred             HHHhccC-CCeEEEEcCCCC-Ch-hHHHhcCc--eecCCHHhhcCcCCEEEEcCCCCh------hh-----hccccHHHH
Q 021995          133 LQRLKPF-NCNLLYHDRVKM-DP-QLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTE------KT-----RGMFDKDRI  196 (304)
Q Consensus       133 A~~l~~~-G~~V~~~dr~~~-~~-~~~~~~g~--~~~~~l~ell~~aDvVi~~~p~~~------~t-----~~~i~~~~l  196 (304)
                      +..+..+ |++|.+..|... +. ...++.|.  ....++++.++++|+|....-..+      +.     ..-++.+.+
T Consensus       168 ~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l  247 (299)
T 1pg5_A          168 LRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLA  247 (299)
T ss_dssp             HHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHH
T ss_pred             HHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHH
Confidence            9999999 999999988642 22 22334454  345789999999999987654321      11     245688899


Q ss_pred             hcCCCCCEEEEcC
Q 021995          197 AKMKKGVLIVNNA  209 (304)
Q Consensus       197 ~~mk~g~ilVn~~  209 (304)
                      +.+|++++|..+.
T Consensus       248 ~~a~~~ai~mH~l  260 (299)
T 1pg5_A          248 NKMKKDSIILHPL  260 (299)
T ss_dssp             HTSCTTCEEECCS
T ss_pred             HhcCCCCEEECCC
Confidence            9999999988775

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.50  E-value=0.00015  Score=66.17  Aligned_cols=112  Identities=16%  Similarity=0.257  Sum_probs=68.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhcC--------cee-cCCHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKETG--------AKF-EEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~g--------~~~-~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ++|+|||.|.+|..+|..|...|+  +|..+|++....+ ...+..        ... ..+ .+.+++||+|+++.+...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999988888  9999998653221 111111        111 123 356899999999995322


Q ss_pred             h-----------hhccccH---HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995          186 K-----------TRGMFDK---DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  231 (304)
Q Consensus       186 ~-----------t~~~i~~---~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga  231 (304)
                      .           +-.++ +   +.+....+++++|+++.+.-+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIF-RELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHH-HHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHH-HHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           11111 1   22233368999999876655545555555545555544

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.48  E-value=0.0035  Score=57.52  Aligned_cols=130  Identities=13%  Similarity=0.138  Sum_probs=90.9

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++                    | .+.|.+|+++|= +++.++++..
T Consensus       118 lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~gl~va~vGD~~rva~Sl~~~  174 (315)
T 1pvv_A          118 LAKYATVPVINGLSDFSHPC--QALADYMTIWEKK--------------------G-TIKGVKVVYVGDGNNVAHSLMIA  174 (315)
T ss_dssp             HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEECCCcchHHHHHHH
Confidence            45566799999755433332  3455555554421                    1 478999999996 8899999999


Q ss_pred             hccCCCeEEEEcCCCC-Chh-H---HH----hcC--ceecCCHHhhcCcCCEEEEcCCC-------Chh-----hhcccc
Q 021995          136 LKPFNCNLLYHDRVKM-DPQ-L---EK----ETG--AKFEEDLDTMLPKCDIVVVNTPL-------TEK-----TRGMFD  192 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~-~---~~----~~g--~~~~~~l~ell~~aDvVi~~~p~-------~~~-----t~~~i~  192 (304)
                      +..+|++|.+..|... +.+ .   ++    +.|  +....++++.++++|+|....=.       .++     ...-++
T Consensus       175 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~  254 (315)
T 1pvv_A          175 GTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVN  254 (315)
T ss_dssp             HHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBC
T ss_pred             HHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCC
Confidence            9999999999998653 222 2   11    445  44568999999999999884421       111     124578


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 021995          193 KDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~  209 (304)
                      .+.++.+|++++|..+.
T Consensus       255 ~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          255 KDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             HHHHHTSCTTCEEEECS
T ss_pred             HHHHhhcCCCcEEECCC
Confidence            89999999999998775

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.46  E-value=0.00012  Score=70.49  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=68.9

Q ss_pred             CCCEEEEEeeChhh--HHHHHHhcc----CCCeEEEEcCCCCChhHHHhc---------CceecCCHHhhcCcCCEEEEc
Q 021995          116 EGKTVGTVGCGRIG--KLLLQRLKP----FNCNLLYHDRVKMDPQLEKET---------GAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~G~IG--~~lA~~l~~----~G~~V~~~dr~~~~~~~~~~~---------g~~~~~~l~ell~~aDvVi~~  180 (304)
                      ..++|+|||.|.+|  ..++..+..    .| +|+.||+++...+.....         .+....++++++++||+|+.+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            45699999999984  677766642    46 999999965322211111         234557899999999999999


Q ss_pred             CCCC-----------hhhhcccc---------------------H---HHHhcCCCCCEEEEcCCCchhchHHHHHH
Q 021995          181 TPLT-----------EKTRGMFD---------------------K---DRIAKMKKGVLIVNNARGAIMDTQAVVDA  222 (304)
Q Consensus       181 ~p~~-----------~~t~~~i~---------------------~---~~l~~mk~g~ilVn~~rg~~vd~~aL~~a  222 (304)
                      ++..           |.-.++..                     .   +.+....|++++||++..--+-+.++.+.
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~  159 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV  159 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH
Confidence            9642           22222311                     1   12334468999999998765555555443

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=97.45  E-value=0.0025  Score=59.04  Aligned_cols=130  Identities=12%  Similarity=0.156  Sum_probs=88.3

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++..+|+|.|.-+....++  .+|+=++.+.+++                    | .+.|.+|++||= +++.++++..
T Consensus       142 lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~--------------------G-~l~glkva~vGD~~nva~Sl~~~  198 (340)
T 4ep1_A          142 LAKESSIPVINGLTDDHHPC--QALADLMTIYEET--------------------N-TFKGIKLAYVGDGNNVCHSLLLA  198 (340)
T ss_dssp             HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEECCCchhHHHHHHH
Confidence            45667899998754332221  2344445554421                    1 388999999995 6789999999


Q ss_pred             hccCCCeEEEEcCCCC-ChhH--------HHhcC--ceecCCHHhhcCcCCEEEEcCCCCh------h-----hhccccH
Q 021995          136 LKPFNCNLLYHDRVKM-DPQL--------EKETG--AKFEEDLDTMLPKCDIVVVNTPLTE------K-----TRGMFDK  193 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~~--------~~~~g--~~~~~~l~ell~~aDvVi~~~p~~~------~-----t~~~i~~  193 (304)
                      +..+|++|.+..|... +.+.        +++.|  +....++++.++++|+|....=...      +     ...-++.
T Consensus       199 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~  278 (340)
T 4ep1_A          199 SAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINK  278 (340)
T ss_dssp             HHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCH
T ss_pred             HHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCH
Confidence            9999999999988642 2221        12445  3456799999999999987542211      0     1235788


Q ss_pred             HHHhcCCCCCEEEEcC
Q 021995          194 DRIAKMKKGVLIVNNA  209 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~  209 (304)
                      +.++.+|++++|..+.
T Consensus       279 ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          279 ELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             HHHTTSCTTCEEEECS
T ss_pred             HHHHhcCCCcEEECCC
Confidence            9999999999998886

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.45  E-value=0.0005  Score=63.30  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=62.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHH----Hh----c--C--ceecCCHHhhcCcCCEEEEcC--C
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE----KE----T--G--AKFEEDLDTMLPKCDIVVVNT--P  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~----~~----~--g--~~~~~~l~ell~~aDvVi~~~--p  182 (304)
                      ++|+|||.|.+|..+|..+...|+ +|..+|.+....+..    ..    .  .  +....++ +.+++||+|+++.  |
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p   83 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT   83 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence            589999999999999999988787 899999876433211    00    1  1  2333567 7789999999998  5


Q ss_pred             CChhhh-------cc------ccHHHH---hcCCCCCEEEEcCCCchh
Q 021995          183 LTEKTR-------GM------FDKDRI---AKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       183 ~~~~t~-------~~------i~~~~l---~~mk~g~ilVn~~rg~~v  214 (304)
                      ..+...       .+      +-.+.+   ....+++++|+++...-+
T Consensus        84 ~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~  131 (322)
T 1t2d_A           84 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV  131 (322)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH
T ss_pred             CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHH
Confidence            432210       00      112222   223589999998654333

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.45  E-value=0.00016  Score=67.48  Aligned_cols=87  Identities=22%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC------ceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG------AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g------~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      +.++|+|+|.|.+|+.+++.|.. ..+|.+.|++....+...+..      +...+++.++++++|+|+.++|..-    
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~----   89 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFL----   89 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG----
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc----
Confidence            34589999999999999999976 578999998654333332221      1112356788999999999998542    


Q ss_pred             cccHHHH-hcCCCCCEEEEcC
Q 021995          190 MFDKDRI-AKMKKGVLIVNNA  209 (304)
Q Consensus       190 ~i~~~~l-~~mk~g~ilVn~~  209 (304)
                        +.... ..++.|.-+||++
T Consensus        90 --~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           90 --GFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             --HHHHHHHHHHHTCEEEECC
T ss_pred             --cchHHHHHHhcCcceEeee
Confidence              11222 2234566666665

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.44  E-value=0.00027  Score=65.46  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+. .+..++.. +++|+ ++|+++...+ ....+...+.++++++..  .|+|++++|...
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   79 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT   79 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence            48999999999997 77777655 78865 7787643222 111245667899999875  899999999654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.44  E-value=0.00014  Score=68.11  Aligned_cols=91  Identities=16%  Similarity=0.244  Sum_probs=70.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.++++|+..+   .+   .+++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            5889999999999999999999999999999988777777778886432   12   22334578999988864321   


Q ss_pred             cccHHHHhcCCCCCEEEEcCCC
Q 021995          190 MFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                        -...++.|+++..+|.++..
T Consensus       271 --~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          271 --LDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             --HHHHHTTEEEEEEEEECCCC
T ss_pred             --HHHHHHHhccCCEEEEeccC
Confidence              25678889999999998753

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.43  E-value=0.00027  Score=65.84  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcCc--CCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK--CDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~l~ell~~--aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+. .+..++.. +++|+ ++|+++..  .++++ +...+.++++++..  .|+|++|+|...
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   77 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL--SKERYPQASIVRSFKELTEDPEIDLIVVNTPDNT   77 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG--GGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGG
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHHhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence            48999999999997 67777654 78865 77887543  33444 56677899999987  899999999543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.43  E-value=0.00032  Score=71.62  Aligned_cols=116  Identities=13%  Similarity=0.175  Sum_probs=79.9

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh---------------c-------CceecCCHHhhcCcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------------T-------GAKFEEDLDTMLPKC  174 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~---------------~-------g~~~~~~l~ell~~a  174 (304)
                      =++|||||.|.||..+|..+...|++|+.+|+++...+...+               .       ......+++ .+++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence            369999999999999999999999999999987532221110               0       012233443 47799


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      |+|+=++|-+.+.+.-+-+++=+.++++++|-..+++  +....|.+.++ +.-+.+++=-|
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFf  453 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFF  453 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECC
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-Ccccccccccc
Confidence            9999999988887776666777778999998665544  44455655542 33343444433

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.42  E-value=0.00036  Score=65.08  Aligned_cols=90  Identities=17%  Similarity=0.112  Sum_probs=69.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVi~~~p  182 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+...       .++.+.+.     ..|+++-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988777777888886422       12333222     5899999886


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       272 ~~~~-----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGV-----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEEcC
Confidence            4222     15678889999 99998874

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=97.42  E-value=0.0022  Score=59.42  Aligned_cols=132  Identities=14%  Similarity=0.092  Sum_probs=88.0

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++-.+|+|.|.-+....++  .+|+=++.+.+++.                  .|..+.|.+|++||= +++.++++..
T Consensus       135 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~------------------~G~~l~glkva~vGD~~rva~Sl~~~  194 (339)
T 4a8t_A          135 LANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP------------------EGKKLEDCKVVFVGDATQVCFSLGLI  194 (339)
T ss_dssp             HHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC------------------TTCCGGGCEEEEESSCCHHHHHHHHH
T ss_pred             HHHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh------------------cCCCCCCCEEEEECCCchhHHHHHHH
Confidence            45667899999865433332  34555555554320                  022488999999995 7899999999


Q ss_pred             hccCCCeEEEEcCCCC-ChhH--------HHhcC--ceecCCHHhhcCcCCEEEEcC--CC--C----hh----h--hcc
Q 021995          136 LKPFNCNLLYHDRVKM-DPQL--------EKETG--AKFEEDLDTMLPKCDIVVVNT--PL--T----EK----T--RGM  190 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~~--------~~~~g--~~~~~~l~ell~~aDvVi~~~--p~--~----~~----t--~~~  190 (304)
                      +..+|++|.+..|... +.+.        +++.|  +....+++ .++++|+|..-+  +.  .    .+    .  ..-
T Consensus       195 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~  273 (339)
T 4a8t_A          195 TTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQ  273 (339)
T ss_dssp             HHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTC
T ss_pred             HHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccc
Confidence            9999999999988652 2221        12345  34567899 999999998633  11  0    11    1  144


Q ss_pred             ccHHHHhcCCCCCEEEEcC
Q 021995          191 FDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~  209 (304)
                      ++.+.++.+|++++|..+.
T Consensus       274 vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          274 VNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             BCHHHHHHHCTTCEEEECS
T ss_pred             cCHHHHHhcCCCcEEECCC
Confidence            6788888888888888775

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.42  E-value=0.00033  Score=65.11  Aligned_cols=66  Identities=18%  Similarity=0.294  Sum_probs=50.5

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.||+. .+..++.. +++|+ ++|+++  ....+.+ +...+.++++++.  +.|+|++|+|...
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   77 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGL   77 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTT
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHH
Confidence            48999999999997 67777765 78865 677764  2233444 5667789999998  6899999999654

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.42  E-value=0.00025  Score=67.88  Aligned_cols=108  Identities=17%  Similarity=0.217  Sum_probs=67.7

Q ss_pred             CCEEEEEeeChhhH-HHHHHhccC-CCeE-EEEcCCCCChh-HHHhcCce-----ecCCHHhhcC--cCCEEEEcCCCCh
Q 021995          117 GKTVGTVGCGRIGK-LLLQRLKPF-NCNL-LYHDRVKMDPQ-LEKETGAK-----FEEDLDTMLP--KCDIVVVNTPLTE  185 (304)
Q Consensus       117 g~~vgIIG~G~IG~-~lA~~l~~~-G~~V-~~~dr~~~~~~-~~~~~g~~-----~~~~l~ell~--~aDvVi~~~p~~~  185 (304)
                      -.+|||||+|.||+ .+++.+... ++++ .++|++....+ .++.+|+.     .+.++++++.  +.|+|++++|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            35899999999997 899888765 6775 57888653332 33445653     4678999987  7999999999543


Q ss_pred             hhhccccHHHHhcCCCCC-EEEEc-CCCchhchHHHHHHHHcCCce
Q 021995          186 KTRGMFDKDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~-ilVn~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ..     +-....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus       163 h~-----~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          163 HA-----EFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             HH-----HHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             HH-----HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence            22     22333455555 34331 112334445566665554433

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.42  E-value=0.00034  Score=65.25  Aligned_cols=90  Identities=17%  Similarity=0.076  Sum_probs=69.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVi~~~p  182 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+...       .++.+.+     ...|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988777778888886432       1233322     15899999886


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RIET-----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHHhcCCCEEEEEcc
Confidence            4222     15678889999 99998873

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.41  E-value=0.00019  Score=65.70  Aligned_cols=113  Identities=12%  Similarity=0.165  Sum_probs=66.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHh---c---CceecCCHHhhcCcCCEEEEcCCCCh---
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKE---T---GAKFEEDLDTMLPKCDIVVVNTPLTE---  185 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~---~---g~~~~~~l~ell~~aDvVi~~~p~~~---  185 (304)
                      .++|+|||.|.||..++..+...|.  +|..+|.+......+.+   .   .+....++ +.+++||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3799999999999999998876677  89999987632111111   1   23333567 66899999999973211   


Q ss_pred             -------hhhccccHHHH---hcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          186 -------KTRGMFDKDRI---AKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       186 -------~t~~~i~~~~l---~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                             .+..++ .+.+   ....+++++++++...-+-...+.+.  +...++.|.
T Consensus        93 tR~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           93 SYLDVVQSNVDMF-RALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             CHHHHHHHHHHHH-HHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence                   111111 2222   22248999999887443333333332  223355554

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.41  E-value=0.0014  Score=59.88  Aligned_cols=127  Identities=16%  Similarity=0.270  Sum_probs=87.3

Q ss_pred             HHHhCCcEEEEcC-CCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC---hhhHHH
Q 021995           57 AAAAAGLTVAEVT-GSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG---RIGKLL  132 (304)
Q Consensus        57 ~~~~~gI~v~n~~-g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G---~IG~~l  132 (304)
                      .++..+|+|.|.- |....++  .+|+-++.+.+++                    | .+.|.+|+++|=|   ++.+++
T Consensus       109 la~~~~vPVINagdg~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~glkva~vGD~~~~rva~Sl  165 (304)
T 3r7f_A          109 LVSQVNIPILNAGDGCGQHPT--QSLLDLMTIYEEF--------------------N-TFKGLTVSIHGDIKHSRVARSN  165 (304)
T ss_dssp             HHHHCSSCEEESCCTTSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCTTCHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEEcCCCCcchHHHH
Confidence            3556789999985 4443332  2344445554421                    1 4789999999975   699999


Q ss_pred             HHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh-----------hhhccccHHHHhcCCC
Q 021995          133 LQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE-----------KTRGMFDKDRIAKMKK  201 (304)
Q Consensus       133 A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~-----------~t~~~i~~~~l~~mk~  201 (304)
                      +..+..+|++|.+..|....++. ...|  ...++++.++++|+|....-..+           ....-++.+.++.+|+
T Consensus       166 ~~~~~~~G~~v~~~~P~~~~~~~-~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~  242 (304)
T 3r7f_A          166 AEVLTRLGARVLFSGPSEWQDEE-NTFG--TYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKR  242 (304)
T ss_dssp             HHHHHHTTCEEEEESCGGGSCTT-CSSC--EECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCT
T ss_pred             HHHHHHcCCEEEEECCCccCcch-hhcC--ccCCHHHHhCCCCEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCC
Confidence            99999999999999875422221 2233  34589999999999987532111           1124478899999999


Q ss_pred             CCEEEEcC
Q 021995          202 GVLIVNNA  209 (304)
Q Consensus       202 g~ilVn~~  209 (304)
                      +++|..+.
T Consensus       243 ~ai~mHcl  250 (304)
T 3r7f_A          243 HAIIMHPA  250 (304)
T ss_dssp             TCEEECCS
T ss_pred             CCEEECCC
Confidence            99998775

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.40  E-value=0.00014  Score=67.63  Aligned_cols=93  Identities=26%  Similarity=0.233  Sum_probs=70.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----C-CHHh-hcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----E-DLDT-MLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~-~l~e-ll~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|+|.|.+|..+++.++.+|++|++.++++.+.+.++++|+..+     . ++.+ +....|+|+-+++.++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            5889999999999999999999999999999988877888888886432     1 3322 2247899999987521  0


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ..+ ...++.|+++..+|.++..
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecCC
Confidence            112 3567788999999998743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.40  E-value=0.00037  Score=65.02  Aligned_cols=90  Identities=17%  Similarity=0.123  Sum_probs=68.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVi~~~p  182 (304)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.++++.+.+.++++|+...       +++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            58899999999999999999999999 79999988777777788886422       12333221     5899998886


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RLDT-----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CHHH-----HHHHHHHBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEecc
Confidence            4222     15677888998 89988863

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.40  E-value=0.00046  Score=64.38  Aligned_cols=90  Identities=14%  Similarity=0.046  Sum_probs=68.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVi~~~p  182 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+...       +++.+.+     ...|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            58899999999999999999999999 79999988777777888886422       1233322     25899998886


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       275 ~~~~-----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQT-----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHhhcCCCEEEEECC
Confidence            4221     15678889998 89988874

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.39  E-value=0.001  Score=61.48  Aligned_cols=132  Identities=12%  Similarity=0.107  Sum_probs=90.9

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++                   .|..+.|.+|+++|=|  +++++++.
T Consensus       116 lA~~~~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~-------------------~g~~l~gl~ia~vGD~~~~va~Sl~~  174 (333)
T 1duv_G          116 LAEYASVPVWNGLTNEFHPT--QLLADLLTMQEHL-------------------PGKAFNEMTLVYAGDARNNMGNSMLE  174 (333)
T ss_dssp             HHHHHSSCEEESCCSSCCHH--HHHHHHHHHHHHS-------------------TTCCGGGCEEEEESCTTSHHHHHHHH
T ss_pred             HHHhCCCCeEcCCCCCCCch--HHHHHHHHHHHHh-------------------cCCCCCCcEEEEECCCccchHHHHHH
Confidence            34456799999765433332  3455555555421                   1214789999999986  99999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-H---H----HhcC--ceecCCHHhhcCcCCEEEEcCCC--C------hh-----hhcc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-L---E----KETG--AKFEEDLDTMLPKCDIVVVNTPL--T------EK-----TRGM  190 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~---~----~~~g--~~~~~~l~ell~~aDvVi~~~p~--~------~~-----t~~~  190 (304)
                      .+..+|++|.+..|... +.+ .   +    ++.|  +....++++.++++|+|....=.  .      .+     ...-
T Consensus       175 ~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~  254 (333)
T 1duv_G          175 AAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQ  254 (333)
T ss_dssp             HHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGC
T ss_pred             HHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccc
Confidence            99999999999988642 222 2   1    1455  34568999999999999874321  0      00     1245


Q ss_pred             ccHHHHhcC-CCCCEEEEcC
Q 021995          191 FDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~m-k~g~ilVn~~  209 (304)
                      ++.+.++.+ |++++|..+.
T Consensus       255 v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          255 VNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             BCHHHHHTTCCTTCEEEECS
T ss_pred             cCHHHHHhccCCCcEEECCC
Confidence            788999999 9999998875

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=97.38  E-value=0.0028  Score=58.98  Aligned_cols=132  Identities=13%  Similarity=0.071  Sum_probs=89.2

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++..+|+|.|.-+....++  .+|+-++.+.+++.                  .|..+.|.+|++||= +++.++++..
T Consensus       113 lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~~------------------~G~~l~glkva~vGD~~rva~Sl~~~  172 (355)
T 4a8p_A          113 LANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP------------------EGKKLEDCKVVFVGDATQVCFSLGLI  172 (355)
T ss_dssp             HHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC------------------TTCCGGGCEEEEESCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhh------------------cCCCCCCCEEEEECCCchhHHHHHHH
Confidence            45668899999865433332  34555556555321                  022478999999995 7899999999


Q ss_pred             hccCCCeEEEEcCCCC-ChhH--------HHhcC--ceecCCHHhhcCcCCEEEEcC----CCC----hh----h--hcc
Q 021995          136 LKPFNCNLLYHDRVKM-DPQL--------EKETG--AKFEEDLDTMLPKCDIVVVNT----PLT----EK----T--RGM  190 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~~--------~~~~g--~~~~~~l~ell~~aDvVi~~~----p~~----~~----t--~~~  190 (304)
                      +..+|++|.+..|... +.+.        ++..|  +....+++ .++++|+|..-+    ...    .+    .  ..-
T Consensus       173 ~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~  251 (355)
T 4a8p_A          173 TTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQ  251 (355)
T ss_dssp             HHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTC
T ss_pred             HHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccc
Confidence            9999999999988642 2221        12345  34567899 999999998633    110    11    1  144


Q ss_pred             ccHHHHhcCCCCCEEEEcC
Q 021995          191 FDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~  209 (304)
                      ++.+.++.+|++++|..+.
T Consensus       252 vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          252 VNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             BCHHHHHHHCTTCEEEECS
T ss_pred             cCHHHHHhcCCCcEEECCC
Confidence            6888888889999998886

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.37  E-value=0.00033  Score=63.86  Aligned_cols=97  Identities=14%  Similarity=0.207  Sum_probs=60.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHH--hcCc------e--ecCCHHhhcCcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEK--ETGA------K--FEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~--~~g~------~--~~~~l~ell~~aDvVi~~~p  182 (304)
                      ..++|+|||.|.||..++..|...|+  +|.++|++....+ ...  ..+.      .  ...+. +.++.+|+|+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~   84 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   84 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence            34699999999999999999988888  9999999653222 011  1111      1  11243 56789999999995


Q ss_pred             CChhh---h--------c---cccHHHHhcCCCCCEEEEcCCCchh
Q 021995          183 LTEKT---R--------G---MFDKDRIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       183 ~~~~t---~--------~---~i~~~~l~~mk~g~ilVn~~rg~~v  214 (304)
                      ....-   +        .   -+-++ +....+++++|+++-|--+
T Consensus        85 ~~~~~g~~r~~~~~~n~~~~~~~~~~-i~~~~~~~~vi~~~Np~~~  129 (319)
T 1lld_A           85 PRQKPGQSRLELVGATVNILKAIMPN-LVKVAPNAIYMLITNPVDI  129 (319)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHH-HHHHCTTSEEEECCSSHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEecCchHH
Confidence            32210   0        0   11112 2223688999998776433

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.36  E-value=0.00011  Score=68.37  Aligned_cols=68  Identities=22%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CCEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCChhHH-Hhc-CceecCCHHhhcCc--CCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLE-KET-GAKFEEDLDTMLPK--CDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~~~~-~~~-g~~~~~~l~ell~~--aDvVi~~~p~~  184 (304)
                      ..+|||||+|.||+. +++.+... +++++ ++|+++...+.+ +.+ +...+.++++++++  .|+|++++|..
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   79 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQ   79 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcH
Confidence            358999999999995 88888765 78866 788876433333 333 34567899999975  49999999943

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.35  E-value=0.0032  Score=57.99  Aligned_cols=130  Identities=16%  Similarity=0.219  Sum_probs=89.3

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++                    | .+.|.+|+++|=|  ++.++++.
T Consensus       130 lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~gl~va~vGD~~~rva~Sl~~  186 (325)
T 1vlv_A          130 LAEYSGVPVYNGLTDEFHPT--QALADLMTIEENF--------------------G-RLKGVKVVFMGDTRNNVATSLMI  186 (325)
T ss_dssp             HHHHHCSCEEESCCSSCCHH--HHHHHHHHHHHHH--------------------S-CSTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEECCCCcCcHHHHHH
Confidence            34455799999654333332  3455555554421                    1 4899999999985  99999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-H---H----HhcC--ceecCCHHhhcCcCCEEEEcCCC-------Chh-----hhccc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-L---E----KETG--AKFEEDLDTMLPKCDIVVVNTPL-------TEK-----TRGMF  191 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~---~----~~~g--~~~~~~l~ell~~aDvVi~~~p~-------~~~-----t~~~i  191 (304)
                      .+..+|++|.+..|... +.+ .   +    ++.|  +....++++.++++|+|....=.       .++     ...-+
T Consensus       187 ~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v  266 (325)
T 1vlv_A          187 ACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQV  266 (325)
T ss_dssp             HHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCB
T ss_pred             HHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCC
Confidence            99999999999998642 222 2   1    1456  44568999999999999874321       011     12456


Q ss_pred             cHHHHhcC-CCCCEEEEcC
Q 021995          192 DKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       192 ~~~~l~~m-k~g~ilVn~~  209 (304)
                      +.+.++.+ |++++|..+.
T Consensus       267 ~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          267 NERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CHHHHHTTCCTTCEEEECS
T ss_pred             CHHHHHhccCCCeEEECCC
Confidence            88999999 9999998775

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.35  E-value=0.00042  Score=64.51  Aligned_cols=90  Identities=18%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVi~~~p  182 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+...       .++.+.+.     ..|+++-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988777777788886422       12333222     5899998886


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r  210 (304)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       270 ~~~~-----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKV-----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             cHHH-----HHHHHHhhccCCcEEEEEec
Confidence            4222     25678889999 99998873

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=97.34  E-value=0.0052  Score=56.51  Aligned_cols=130  Identities=15%  Similarity=0.157  Sum_probs=89.0

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC-hhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG-RIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G-~IG~~lA~~  135 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++                    | .+.|.+|++||=| ++.++++..
T Consensus       118 lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~gl~va~vGD~~~va~Sl~~~  174 (321)
T 1oth_A          118 LAKEASIPIINGLSDLYHPI--QILADYLTLQEHY--------------------S-SLKGLTLSWIGDGNNILHSIMMS  174 (321)
T ss_dssp             HHHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCSSHHHHHHHTT
T ss_pred             HHHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEECCchhhHHHHHHH
Confidence            34566799999765443332  3455555554421                    1 4899999999975 488899899


Q ss_pred             hccCCCeEEEEcCCCC--ChhHHH-------hcC--ceecCCHHhhcCcCCEEEEcC----CCChh--------hhcccc
Q 021995          136 LKPFNCNLLYHDRVKM--DPQLEK-------ETG--AKFEEDLDTMLPKCDIVVVNT----PLTEK--------TRGMFD  192 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~--~~~~~~-------~~g--~~~~~~l~ell~~aDvVi~~~----p~~~~--------t~~~i~  192 (304)
                      +..+|++|.+..|...  +.+...       +.|  +....++++.++++|+|..-+    ....+        ...-++
T Consensus       175 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~  254 (321)
T 1oth_A          175 AAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVT  254 (321)
T ss_dssp             TGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBC
T ss_pred             HHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceEC
Confidence            9999999999998653  222211       234  455689999999999998843    11111        114468


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 021995          193 KDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~  209 (304)
                      .+.++.+|++++|..+.
T Consensus       255 ~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          255 MKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             HHHHHTSCTTCEEEECS
T ss_pred             HHHHhhcCCCCEEECCC
Confidence            89999999999998775

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.33  E-value=0.00022  Score=65.71  Aligned_cols=91  Identities=22%  Similarity=0.233  Sum_probs=68.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh----cCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----LPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~el----l~~aDvVi~~~p~~~~  186 (304)
                      .|++|.|+|.|.+|..+++.++.+|++|++.++++...+.++++|+...     .++.+.    ....|+++.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            5789999999999999999999999999999987666666777776422     122222    2468999988864222


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                           -...++.|+++..+|.++..
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCCC
T ss_pred             -----HHHHHHHhhcCCEEEEeccc
Confidence                 25677888999999998754

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.32  E-value=0.0004  Score=64.53  Aligned_cols=71  Identities=21%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccC--------CCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPF--------NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~--------G~~V~-~~dr~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVi~~~  181 (304)
                      .+--+|||||+|.||+.-++.++..        +++|+ ++|+++...+ .++++|+ ..+.+++++++  +.|+|++++
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat  102 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT  102 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence            3445899999999999887766542        56755 7788775544 4556676 46789999985  579999999


Q ss_pred             CCCh
Q 021995          182 PLTE  185 (304)
Q Consensus       182 p~~~  185 (304)
                      |...
T Consensus       103 P~~~  106 (393)
T 4fb5_A          103 PNQF  106 (393)
T ss_dssp             CGGG
T ss_pred             ChHH
Confidence            9543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.32  E-value=0.00053  Score=62.69  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeE-EEEcCCCCChhHHHhc-CceecCCHHhhc----------CcCCEEEEcCCCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKET-GAKFEEDLDTML----------PKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V-~~~dr~~~~~~~~~~~-g~~~~~~l~ell----------~~aDvVi~~~p~~  184 (304)
                      .+|||||+ |.||+..++.++..+.++ .++|+++......+.. +...+.++++++          ++.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 689999999998888885 4778877554333333 456677899887          6799999999954

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=97.32  E-value=0.0029  Score=57.80  Aligned_cols=130  Identities=12%  Similarity=0.034  Sum_probs=88.3

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccC-CCEEEEEee-ChhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE-GKTVGTVGC-GRIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~-g~~vgIIG~-G~IG~~lA~  134 (304)
                      .++-.+|+|.|.-.....++  .+|+-++.+.++.                    | .+. |.+|++||= +++.++++.
T Consensus       108 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~~gl~va~vGD~~~va~Sl~~  164 (307)
T 3tpf_A          108 FARYSKAPVINALSELYHPT--QVLGDLFTIKEWN--------------------K-MQNGIAKVAFIGDSNNMCNSWLI  164 (307)
T ss_dssp             HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHTT--------------------C-CGGGCCEEEEESCSSHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCcCcH--HHHHHHHHHHHHh--------------------C-CCCCCCEEEEEcCCCccHHHHHH
Confidence            45667899999755333332  2455555555432                    1 467 999999995 678999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-HH---H----hcC--ceecCCHHhhcCcCCEEEEcC---CCCh-h--------hhccc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-LE---K----ETG--AKFEEDLDTMLPKCDIVVVNT---PLTE-K--------TRGMF  191 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~~---~----~~g--~~~~~~l~ell~~aDvVi~~~---p~~~-~--------t~~~i  191 (304)
                      .+..+|++|.+..|... +.+ ..   +    ..|  +....++++.++++|+|....   -..+ +        ...-+
T Consensus       165 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v  244 (307)
T 3tpf_A          165 TAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMI  244 (307)
T ss_dssp             HHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCB
T ss_pred             HHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhccccc
Confidence            99999999999988652 222 21   1    334  345679999999999998765   1110 0        12346


Q ss_pred             cHHHHhcCCCCCEEEEcC
Q 021995          192 DKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~  209 (304)
                      +.+.++.+|++++|..+.
T Consensus       245 ~~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          245 DEKAMSVANKDAILLHCL  262 (307)
T ss_dssp             CHHHHHHSCTTCEEEECS
T ss_pred             CHHHHHhcCCCcEEECCC
Confidence            888888899999888775

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.31  E-value=0.00077  Score=58.92  Aligned_cols=92  Identities=20%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHhcCceec-CC-HHhhcCcCCEEEEcCCCChhh
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE-ED-LDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~~g~~~~-~~-l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ..+|.|++|.|||.|.+|...++.|...|++|+++++...+.  +.....++... .+ .++.+.++|+|+.++... +.
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~-~~  104 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQ-AV  104 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCT-HH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCH-HH
Confidence            357999999999999999999999999999999999864321  11112223211 11 135678899998776533 32


Q ss_pred             hccccHHHHhcCCCCCEEEEcC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                          |.......+ -.++||+.
T Consensus       105 ----N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          105 ----NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             ----HHHHHHHSC-TTCEEEC-
T ss_pred             ----HHHHHHHHh-CCCEEEEe
Confidence                344444455 67788885

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.31  E-value=0.00062  Score=65.21  Aligned_cols=68  Identities=19%  Similarity=0.291  Sum_probs=50.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHH----hcC---ceecC----CHHhhcC--cCCEEEEcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEK----ETG---AKFEE----DLDTMLP--KCDIVVVNT  181 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~----~~g---~~~~~----~l~ell~--~aDvVi~~~  181 (304)
                      -.+|||||+|.||+..++.+... |++|+ ++|+++...+.+.    ++|   ...+.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988764 77854 7788754333322    234   45566    8999997  589999999


Q ss_pred             CCC
Q 021995          182 PLT  184 (304)
Q Consensus       182 p~~  184 (304)
                      |..
T Consensus       100 p~~  102 (444)
T 2ixa_A          100 PWE  102 (444)
T ss_dssp             CGG
T ss_pred             CcH
Confidence            954

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.31  E-value=0.00038  Score=60.16  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=53.4

Q ss_pred             ccccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc-eec-----CCHHhhcCcCCEEEEcCCCC
Q 021995          112 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFE-----EDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       112 ~~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-~~~-----~~l~ell~~aDvVi~~~p~~  184 (304)
                      ...+.|++|.|.|. |.||+.+++.|...|++|++.+|++...+.....++ ...     +++.+.+.++|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            35789999999997 999999999999999999999997654444333344 221     45678889999999887643

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.31  E-value=0.00042  Score=64.79  Aligned_cols=89  Identities=15%  Similarity=0.102  Sum_probs=68.7

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+..+       .++.+.+.     ..|+++-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988888888888887432       22322221     4899998887


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~  209 (304)
                      ..+.     -...++.++++ ..++.++
T Consensus       273 ~~~~-----~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          273 NVSV-----MRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECS
T ss_pred             CHHH-----HHHHHHHhhccCCEEEEEc
Confidence            4222     25677889996 8888887

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.30  E-value=0.00016  Score=67.32  Aligned_cols=93  Identities=17%  Similarity=0.252  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC---CChhHHHhcCceecC--CH-Hhhc---CcCCEEEEcCCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEKETGAKFEE--DL-DTML---PKCDIVVVNTPLT  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~---~~~~~~~~~g~~~~~--~l-~ell---~~aDvVi~~~p~~  184 (304)
                      .+.|++|.|+|.|.+|..+++.++.+|++|++.+++.   ...+.++++|+...+  ++ +++.   ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5679999999999999999999999999999999876   555666777765431  11 1111   4589999988743


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ...   + ...++.|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            221   0 456788899999999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.28  E-value=0.00054  Score=63.31  Aligned_cols=91  Identities=16%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------CC-HHhh---c-----CcCCEEEEc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------ED-LDTM---L-----PKCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------~~-l~el---l-----~~aDvVi~~  180 (304)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++...+.++++|+...      .+ .+++   .     ...|+++-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            5789999999999999999999999999999987666667777776321      11 1222   2     358999988


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +.....     -...++.++++..+|.++.+
T Consensus       248 ~g~~~~-----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEKC-----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEecC
Confidence            864321     14667889999999998753

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.28  E-value=0.00057  Score=62.61  Aligned_cols=67  Identities=18%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeE-EEEcCCCCChhHHHhc-CceecCCHHhhc-----------CcCCEEEEcCCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKET-GAKFEEDLDTML-----------PKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V-~~~dr~~~~~~~~~~~-g~~~~~~l~ell-----------~~aDvVi~~~p~  183 (304)
                      .++||||+ |.||+..++.++..+.++ .++|+++......+.+ +...+.++++++           ++.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 789999999998888885 4778876554333333 456677898887           579999999995


Q ss_pred             C
Q 021995          184 T  184 (304)
Q Consensus       184 ~  184 (304)
                      .
T Consensus        84 ~   84 (318)
T 3oa2_A           84 Y   84 (318)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.00019  Score=69.60  Aligned_cols=74  Identities=24%  Similarity=0.277  Sum_probs=50.9

Q ss_pred             cccccCCCEEEEEeeChhhHHHHHHhccC-CCeEEEEcCCCCChhHHH-hcCcee--c-----CCHHhhcCcCCEEEEcC
Q 021995          111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEK-ETGAKF--E-----EDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~-~~g~~~--~-----~~l~ell~~aDvVi~~~  181 (304)
                      ....+.+++|+|+|.|.+|+.+++.|... |++|++++|+..+.+... ..++..  .     +++.++++++|+|+.++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            34568899999999999999999999876 789999999754333222 223321  1     24556788999999999


Q ss_pred             CCC
Q 021995          182 PLT  184 (304)
Q Consensus       182 p~~  184 (304)
                      |..
T Consensus        97 p~~   99 (467)
T 2axq_A           97 PYT   99 (467)
T ss_dssp             CGG
T ss_pred             chh
Confidence            854

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=97.25  E-value=0.0039  Score=57.34  Aligned_cols=130  Identities=13%  Similarity=0.126  Sum_probs=87.5

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR  135 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~  135 (304)
                      .++..+|+|.|.-.....++  .+|+-++.+.+++                    | .+.|.+|++||= +++.++++..
T Consensus       120 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~glkva~vGD~~rva~Sl~~~  176 (323)
T 3gd5_A          120 YAHYAGIPVINALTDHEHPC--QVVADLLTIRENF--------------------G-RLAGLKLAYVGDGNNVAHSLLLG  176 (323)
T ss_dssp             HHHHHCSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEECCCCcHHHHHHHH
Confidence            34556789998755332232  2344445554421                    1 478999999995 7789999999


Q ss_pred             hccCCCeEEEEcCCCC-ChhH--------HHhcC--ceecCCHHhhcCcCCEEEEcCCCCh----------h--hhcccc
Q 021995          136 LKPFNCNLLYHDRVKM-DPQL--------EKETG--AKFEEDLDTMLPKCDIVVVNTPLTE----------K--TRGMFD  192 (304)
Q Consensus       136 l~~~G~~V~~~dr~~~-~~~~--------~~~~g--~~~~~~l~ell~~aDvVi~~~p~~~----------~--t~~~i~  192 (304)
                      +..+|++|.+..|... +.+.        +++.|  +....++++.++++|+|....=...          +  ...-++
T Consensus       177 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt  256 (323)
T 3gd5_A          177 CAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQIN  256 (323)
T ss_dssp             HHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBC
T ss_pred             HHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCC
Confidence            9999999999988642 2221        12234  4556799999999999977542111          0  123578


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 021995          193 KDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~  209 (304)
                      .+.++.+|++++|..+.
T Consensus       257 ~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          257 AALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             HHHHHTSCTTCEEEECS
T ss_pred             HHHHhhcCCCcEEECCC
Confidence            89999999999998774

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.24  E-value=0.00022  Score=62.04  Aligned_cols=67  Identities=16%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             CCEEEEEeeChhhHHHHHH--hccCCCeEE-EEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQR--LKPFNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~--l~~~G~~V~-~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ..+|+|||+|++|+.+++.  +...|++++ ++|.++..... ....++...+++++++++.|++++++|.
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            3579999999999999994  345688865 67876643322 2223344567889998777999999994

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.24  E-value=0.00031  Score=64.79  Aligned_cols=67  Identities=16%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCC-hhHHHhcCc-eecCCHHhhcC--cCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~-~~~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      .+|||||+|.||+. .+..++.. +++|+ ++|+++.. .+.++++|+ ..+.+++++++  +.|+|++++|..
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~   97 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTS   97 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCc
Confidence            48999999999986 46666544 78866 67887643 334556776 46789999985  589999999954

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.22  E-value=0.00023  Score=66.15  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++.+.+.+. ++|+..+   .+   +.++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            688999999999999999999999999999998776555655 6776421   22   22334568999988864321  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                         -...++.++++..+|.++.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECSC
T ss_pred             ---HHHHHHHhccCCEEEEeCC
Confidence               2567788999999999874

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.22  E-value=0.00054  Score=63.23  Aligned_cols=67  Identities=24%  Similarity=0.410  Sum_probs=51.7

Q ss_pred             CEEEEEeeC-hhhHHHHHHhccC--CCeE-EEEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCC
Q 021995          118 KTVGTVGCG-RIGKLLLQRLKPF--NCNL-LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G-~IG~~lA~~l~~~--G~~V-~~~dr~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      .+|||||+| .+|+..+..++..  ++++ .++|+++...+ .+++++. ..+.+++++++  +.|+|++++|..
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   93 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE   93 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            489999999 8999999988765  5776 57788654332 3445676 66789999985  589999999954

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.22  E-value=0.00049  Score=63.75  Aligned_cols=91  Identities=21%  Similarity=0.222  Sum_probs=68.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C-----CHH-hhc----CcCCEEEEcC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E-----DLD-TML----PKCDIVVVNT  181 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~-----~l~-ell----~~aDvVi~~~  181 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+...   .     ++. ++.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            57899999999999999999999999 89999987666677777886421   1     111 111    3589999988


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      .....     -...++.++++..+|.++-+
T Consensus       251 g~~~~-----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAEAS-----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CChHH-----HHHHHHHhcCCCEEEEEecC
Confidence            74322     14667889999999998753

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.22  E-value=0.0005  Score=62.35  Aligned_cols=105  Identities=14%  Similarity=0.163  Sum_probs=70.6

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ..+|+|+|+ |.+|+.+++.+...|++++ .+|+.....   ...|+..+.+++++..  ..|++++++|.... ...+ 
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~---~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~-~~~~-   81 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT---THLGLPVFNTVREAVAATGATASVIYVPAPFC-KDSI-   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHHCCCEEEECCCGGGH-HHHH-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc---eeCCeeccCCHHHHhhcCCCCEEEEecCHHHH-HHHH-
Confidence            468999999 9999999999988899844 666642111   1357777789999988  89999999995322 2222 


Q ss_pred             HHHHhcCCCC-CEEEEcCCCc-hhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKG-VLIVNNARGA-IMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g-~ilVn~~rg~-~vd~~aL~~aL~~g~i~  229 (304)
                      .+.+   +.| ..+|..+.|- .-+.+.|.++.++..+.
T Consensus        82 ~ea~---~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           82 LEAI---DAGIKLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHHH---HTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2333   233 3345566554 33556888888776654

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=97.21  E-value=0.004  Score=58.16  Aligned_cols=130  Identities=14%  Similarity=0.172  Sum_probs=88.0

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++-.+|+|.|.-+....++  .+|+=++.+.+++                    | .+.|++|++||=|  +++++++.
T Consensus       143 lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~--------------------G-~l~glkva~vGD~~nnva~Sl~~  199 (365)
T 4amu_A          143 LVKYSGVPVWNGLTDDEHPT--QIIADFMTMKEKF--------------------G-NLKNKKIVFIGDYKNNVGVSTMI  199 (365)
T ss_dssp             HHHHHCSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-SCTTCEEEEESSTTSHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEECCCCcchHHHHHH
Confidence            34556788888755433332  2344444444321                    1 3899999999987  78999999


Q ss_pred             HhccCCCeEEEEcCCCCCh----hH-------HHhcC--ceecCCHHhhcCcCCEEEEcC--CCCh--h---------hh
Q 021995          135 RLKPFNCNLLYHDRVKMDP----QL-------EKETG--AKFEEDLDTMLPKCDIVVVNT--PLTE--K---------TR  188 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~~~----~~-------~~~~g--~~~~~~l~ell~~aDvVi~~~--p~~~--~---------t~  188 (304)
                      .+..+|++|.+..|....+    +.       +++.|  +....++++.++++|+|..-+  +..+  +         ..
T Consensus       200 ~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~  279 (365)
T 4amu_A          200 GAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKN  279 (365)
T ss_dssp             HHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTT
T ss_pred             HHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcc
Confidence            9999999999998854222    21       23345  345679999999999998742  1111  1         11


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .-++.+.++.+|++++|..+.
T Consensus       280 y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          280 FQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             CCBCHHHHHHSCTTCEEEECS
T ss_pred             cccCHHHHHhcCCCcEEECCC
Confidence            347888999999999998886

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.21  E-value=0.00031  Score=64.46  Aligned_cols=93  Identities=14%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhH-HHhc---------CceecCCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET---------GAKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~-~~~~---------g~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      .++|+|||.|.||..++..++..|.  +|..+|++....+. ..++         ..+...+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3699999999999999998876554  89999986531111 1111         0111123456789999999997653


Q ss_pred             hhh-----------hccccHH---HHhcCCCCCEEEEcCC
Q 021995          185 EKT-----------RGMFDKD---RIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t-----------~~~i~~~---~l~~mk~g~ilVn~~r  210 (304)
                      ..-           ..++ .+   .+....|++++++++.
T Consensus        86 ~~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIF-RSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHH-HHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHcChHHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            210           0111 11   2223358889999865

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.21  E-value=0.00024  Score=64.24  Aligned_cols=88  Identities=15%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|+|. |.+|..+++.++.+|++|++.++++.+.+.++++|....      .++.+.+...|+++. +.. +.  
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~--  200 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KE--  200 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TT--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HH--
Confidence            5789999998 999999999999999999999987766677777776432      122233467899988 754 21  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                         -...++.|+++..+|.++.
T Consensus       201 ---~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          201 ---VEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             ---HHHHHTTEEEEEEEEEC--
T ss_pred             ---HHHHHHhhccCCEEEEEeC
Confidence               2577888999999998863

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=97.20  E-value=0.0037  Score=56.68  Aligned_cols=152  Identities=14%  Similarity=0.083  Sum_probs=92.3

Q ss_pred             cchhhhccccceeeccccccchhchhHH---HhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEE-cCCCChhHHH
Q 021995            2 AMKRVASSAINAFASSGFLRSSSRFSRH---YASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAE-VTGSNVVSVA   77 (304)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n-~~g~~~~~vA   77 (304)
                      ||++.-.+.++.-..+.-+.....+...   |...- .-.|..-...-.    .+....++-.+|+|.| .-|....++ 
T Consensus        55 A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~-~D~iviR~~~~~----~~~~~la~~~~vPVINAG~g~~~HPt-  128 (291)
T 3d6n_B           55 AARELGIETYLVSGSESSTVKGESFFDTLKTFEGLG-FDYVVFRVPFVF----FPYKEIVKSLNLRLVNAGDGTHQHPS-  128 (291)
T ss_dssp             HHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHHTT-CSEEEEEESSCC----CSCHHHHHTCSSEEEEEEETTTBCHH-
T ss_pred             HHHHhCCeEEEECCccCcccCCCcHHHHHHHHHHhc-CCEEEEEcCChH----HHHHHHHHhCCCCEEeCccCCCcCcH-
Confidence            3445544544443322233455555433   33321 134444322222    2222145567899999 334443332 


Q ss_pred             HHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee---ChhhHHHHHHhccCCCeEEEEcCCCCChh
Q 021995           78 EDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ  154 (304)
Q Consensus        78 E~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~---G~IG~~lA~~l~~~G~~V~~~dr~~~~~~  154 (304)
                       .+|+-++.+.+++                    | .+.|.+|+++|=   +++.++++..+..+|++|.+..|....+.
T Consensus       129 -QaLaDl~Ti~e~~--------------------g-~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~  186 (291)
T 3d6n_B          129 -QGLIDFFTIKEHF--------------------G-EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPR  186 (291)
T ss_dssp             -HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCT
T ss_pred             -HHHHHHHHHHHHh--------------------C-CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCc
Confidence             2344455554421                    1 488999999997   89999999999999999999988642222


Q ss_pred             HHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          155 LEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       155 ~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ...+.|+....++++.++++|+|.. +-
T Consensus       187 ~~~~~g~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          187 DVEVFKVDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             TGGGGCEEEESSHHHHHHHCSEEEE-CC
T ss_pred             hHHHCCCEEEcCHHHHhCCCCEEEE-eC
Confidence            2335577777899999999999988 54

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.19  E-value=0.00054  Score=66.49  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             CCCEEEEEee----ChhhHHHHHHhccC--CCeEE-EEcCCCCChh-HHHhcCce---ecCCHHhhcC--cCCEEEEcCC
Q 021995          116 EGKTVGTVGC----GRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAK---FEEDLDTMLP--KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~----G~IG~~lA~~l~~~--G~~V~-~~dr~~~~~~-~~~~~g~~---~~~~l~ell~--~aDvVi~~~p  182 (304)
                      .-.+|||||+    |.||+..++.+...  +++|+ ++|+++...+ .++++|+.   .+.+++++++  +.|+|++++|
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp  117 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK  117 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence            3458999999    99999999988865  78864 7888654332 34455653   6789999985  6999999999


Q ss_pred             CC
Q 021995          183 LT  184 (304)
Q Consensus       183 ~~  184 (304)
                      ..
T Consensus       118 ~~  119 (479)
T 2nvw_A          118 VP  119 (479)
T ss_dssp             HH
T ss_pred             cH
Confidence            44

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.19  E-value=0.00035  Score=67.27  Aligned_cols=69  Identities=20%  Similarity=0.177  Sum_probs=49.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcC-cee----c---CCHHhhcCcCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETG-AKF----E---EDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g-~~~----~---~~l~ell~~aDvVi~~~p~~  184 (304)
                      .+++|+|+|.|.||+.+++.|...|++|.+++|+..+.+... ..+ ...    .   ++++++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            468999999999999999999999999999999653222111 111 111    1   24557788999999999864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.18  E-value=0.00027  Score=65.04  Aligned_cols=90  Identities=20%  Similarity=0.214  Sum_probs=67.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc----CcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----PKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell----~~aDvVi~~~p~~~~  186 (304)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++.+.+.++++|+...     .++.+.+    ...|+++.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            6889999999999999999999999999999987767777788886421     1232222    257888888753322


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                           -...++.++++..++.++-
T Consensus       246 -----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          246 -----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             -----HHHHHHHEEEEEEEEECSC
T ss_pred             -----HHHHHHHhccCCEEEEeCC
Confidence                 1466778889999988874

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.16  E-value=0.00062  Score=64.18  Aligned_cols=70  Identities=20%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             CCCEEEEEeeCh---hhHHHHHHhccCC-CeEE--EEcCCCCCh-hHHHhcCc---eecCCHHhhcCc-------CCEEE
Q 021995          116 EGKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKMDP-QLEKETGA---KFEEDLDTMLPK-------CDIVV  178 (304)
Q Consensus       116 ~g~~vgIIG~G~---IG~~lA~~l~~~G-~~V~--~~dr~~~~~-~~~~~~g~---~~~~~l~ell~~-------aDvVi  178 (304)
                      .-.+|||||+|.   ||+..+..++..+ ++++  ++|+++... ..++++|+   ..+.+++++++.       .|+|+
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~   90 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS   90 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence            345899999999   9999988776554 7766  468876433 33456777   567899999865       99999


Q ss_pred             EcCCCCh
Q 021995          179 VNTPLTE  185 (304)
Q Consensus       179 ~~~p~~~  185 (304)
                      +++|...
T Consensus        91 i~tp~~~   97 (398)
T 3dty_A           91 IATPNGT   97 (398)
T ss_dssp             EESCGGG
T ss_pred             ECCCcHH
Confidence            9999653

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.16  E-value=0.0013  Score=60.41  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=66.4

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc--C------ceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--G------AKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~--g------~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ..+|+|||.|.+|..++..+...|.  +|..+|.+....+ ...++  +      .+...+..+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3589999999999999999987777  8999998754322 12221  1      1111123567899999999987532


Q ss_pred             hhhcc-------cc----H---HHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          186 KTRGM-------FD----K---DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       186 ~t~~~-------i~----~---~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                      . .+.       .|    .   +.+....|++++|+++..-=+....+.+.  +...++.|.
T Consensus        87 k-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           87 K-PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             C-CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence            1 111       00    1   12223368999999855433333334333  344466665

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.16  E-value=0.0038  Score=59.75  Aligned_cols=109  Identities=15%  Similarity=0.211  Sum_probs=71.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHHHh----cC-------ceecCCHHhhc-
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKE----TG-------AKFEEDLDTML-  171 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~~~----~g-------~~~~~~l~ell-  171 (304)
                      +.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+       ....+...+    .+       .+.. +.++++ 
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~  308 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWG  308 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTT
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-Cchhhhc
Confidence            347899999999999999999999999999988 44543       222222211    11       2233 445554 


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ..||+++-|...     +.++.+....++ -.+++-.+.+++-  .+-.+.|.+..+.
T Consensus       309 ~~~DIlvPcA~~-----n~i~~~na~~l~-ak~VvEgAN~p~t--~eA~~iL~~~GI~  358 (440)
T 3aog_A          309 LPVEFLVPAALE-----KQITEQNAWRIR-ARIVAEGANGPTT--PAADDILLEKGVL  358 (440)
T ss_dssp             CCCSEEEECSSS-----SCBCTTTGGGCC-CSEEECCSSSCBC--HHHHHHHHHHTCE
T ss_pred             CCCcEEEecCCc-----CccchhhHHHcC-CcEEEecCccccC--HHHHHHHHHCCCE
Confidence            379999988753     455666666663 4667777777753  3344556666555

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.00093  Score=63.48  Aligned_cols=69  Identities=20%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             CCEEEEEeeCh---hhHHHHHHhccCC-CeEE--EEcCCCCCh-hHHHhcCc---eecCCHHhhcCc-------CCEEEE
Q 021995          117 GKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKMDP-QLEKETGA---KFEEDLDTMLPK-------CDIVVV  179 (304)
Q Consensus       117 g~~vgIIG~G~---IG~~lA~~l~~~G-~~V~--~~dr~~~~~-~~~~~~g~---~~~~~l~ell~~-------aDvVi~  179 (304)
                      -.+|||||+|.   ||+..+..++..+ ++++  ++|+++... +.++++|+   ..+.+++++++.       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999888776554 6765  568865433 34456677   467899999876       999999


Q ss_pred             cCCCCh
Q 021995          180 NTPLTE  185 (304)
Q Consensus       180 ~~p~~~  185 (304)
                      ++|...
T Consensus       117 ~tp~~~  122 (417)
T 3v5n_A          117 VTPNHV  122 (417)
T ss_dssp             CSCTTS
T ss_pred             CCCcHH
Confidence            999653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.13  E-value=0.00086  Score=61.31  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=59.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHh--c-------C--ceecCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE--T-------G--AKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~--~-------g--~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||.|.+|..++..+...|. +|..+|.+....+. ..+  .       .  +....++ +.+++||+|+++.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999988886 89999987543321 111  0       1  2223566 6789999999997532


Q ss_pred             hh-----------hhccccHHH---HhcCCCCCEEEEcCCC
Q 021995          185 EK-----------TRGMFDKDR---IAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~-----------t~~~i~~~~---l~~mk~g~ilVn~~rg  211 (304)
                      ..           +..++ .+.   +....+++++++++..
T Consensus        82 ~~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~vi~~tNP  121 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADIT-RACISQAAPLSPNAVIIMVNNP  121 (309)
T ss_dssp             -------CHHHHHHHHHH-HHHHHHHGGGCTTCEEEECCSS
T ss_pred             CCCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEcCCc
Confidence            21           00111 122   2333588999998653

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.13  E-value=0.00047  Score=64.80  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhccC--CCeEE-EEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~--G~~V~-~~dr~~~-~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      -.+|||||.| +|+..++.++..  +++++ ++|++.. ..+.++++|+..+.++++++.+.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            3589999999 799988888765  67865 6788764 334566789888889999999999999999854

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.13  E-value=0.0038  Score=59.78  Aligned_cols=140  Identities=12%  Similarity=0.090  Sum_probs=101.5

Q ss_pred             CCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995           61 AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN  140 (304)
Q Consensus        61 ~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G  140 (304)
                      ..|+|.|..   -.-+|--+++.+|+.+|-                    .+..|...+|.|.|.|..|-.+|+.+...|
T Consensus       186 ~~ipvFnDD---~qGTA~V~lAgllnAlki--------------------~gk~l~d~riV~~GAGaAGigia~ll~~~G  242 (487)
T 3nv9_A          186 CDIPVWHDD---QQGTASVTLAGLLNALKL--------------------VKKDIHECRMVFIGAGSSNTTCLRLIVTAG  242 (487)
T ss_dssp             CSSCEEETT---THHHHHHHHHHHHHHHHH--------------------HTCCGGGCCEEEECCSHHHHHHHHHHHHTT
T ss_pred             ccCCccccc---cchHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHcC
Confidence            489999976   355677788999999872                    245788999999999999999999999999


Q ss_pred             C---eEEEEcCCC----CChhH------------HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 021995          141 C---NLLYHDRVK----MDPQL------------EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK  201 (304)
Q Consensus       141 ~---~V~~~dr~~----~~~~~------------~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~  201 (304)
                      .   +++.+|+..    ...+.            +.........+|.|+++.+|+++=+...   ..+.+.++.++.|.+
T Consensus       243 ~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~---~pg~ft~e~V~~Ma~  319 (487)
T 3nv9_A          243 ADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTP---GPGVVKAEWIKSMGE  319 (487)
T ss_dssp             CCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCS---SCCCCCHHHHHTSCS
T ss_pred             CCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEeccc---CCCCCCHHHHHhhcC
Confidence            8   699999863    11111            1111111345899999999987644311   136899999999999


Q ss_pred             CCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          202 GVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       202 g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      ..++.-.|....  |-.=.++.+.|..
T Consensus       320 ~PIIFaLSNPtp--Ei~pe~A~~~G~a  344 (487)
T 3nv9_A          320 KPIVFCCANPVP--EIYPYEAKEAGAY  344 (487)
T ss_dssp             SCEEEECCSSSC--SSCHHHHHHTTCS
T ss_pred             CCEEEECCCCCc--cCCHHHHHHhCCE
Confidence            999999998764  3223344445663

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.12  E-value=0.0014  Score=63.16  Aligned_cols=94  Identities=23%  Similarity=0.260  Sum_probs=68.4

Q ss_pred             cccCCCEEEEEeeC----------hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-CceecCCHHhhcCcCCEEEEcC
Q 021995          113 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       113 ~~L~g~~vgIIG~G----------~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~l~ell~~aDvVi~~~  181 (304)
                      ..+.|++|+|+|+.          .-...+++.|...|++|.+|||.-. .+....+ ++...+++++.++++|+|++++
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV-EQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH-HHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC-HhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            45899999999987          6788999999999999999998542 2222222 5566678899999999999998


Q ss_pred             CCChhhhccccHHHH-hcCCCCCEEEEcCCC
Q 021995          182 PLTEKTRGMFDKDRI-AKMKKGVLIVNNARG  211 (304)
Q Consensus       182 p~~~~t~~~i~~~~l-~~mk~g~ilVn~~rg  211 (304)
                      ...+ . .-++-+.+ +.|+ ..+++|+ |+
T Consensus       397 ~~~~-f-~~~d~~~~~~~~~-~~~i~D~-r~  423 (446)
T 4a7p_A          397 EWDA-F-RALDLTRIKNSLK-SPVLVDL-RN  423 (446)
T ss_dssp             CCTT-T-TSCCHHHHHTTBS-SCBEECS-SC
T ss_pred             CCHH-h-hcCCHHHHHHhcC-CCEEEEC-CC
Confidence            7543 2 22444444 4465 4678885 54

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.12  E-value=0.00033  Score=65.20  Aligned_cols=89  Identities=15%  Similarity=0.047  Sum_probs=66.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll~--~aDvVi~~~p~~  184 (304)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++.+.+.++++|+...     .++.+    +..  ..|+|+-++.. 
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~-  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGG-  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCCh-
Confidence            5889999999999999999999999999999987666677777776432     22222    222  58888888762 


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +     .-...++.++++..+|.++.
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEec
Confidence            1     12567788888888888863

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.11  E-value=0.00069  Score=63.94  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=67.7

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CcCCEEEEcCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDvVi~~~p  182 (304)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+..+     .++.+    +.  ...|+++-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            368899999999999999999999999 89999987767777888886432     22222    22  25999999887


Q ss_pred             CChhhhccccHHHHhcC----CCCCEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKM----KKGVLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~m----k~g~ilVn~~r  210 (304)
                      ....+.    ...++.+    +++..++.++-
T Consensus       292 ~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            542221    2334444    99999999874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.10  E-value=0.00031  Score=61.00  Aligned_cols=97  Identities=19%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCCCCh
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ...++|.|.| .|.||+.+++.|...| ++|++++|++.........++.       ..++++++++++|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            4567999999 6999999999999999 8999999875322211111211       12345678899999998776433


Q ss_pred             hhhccccHHHHhcCCC--CCEEEEcCCCch
Q 021995          186 KTRGMFDKDRIAKMKK--GVLIVNNARGAI  213 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~--g~ilVn~~rg~~  213 (304)
                      ..  ......++.|++  ...||+++....
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112344555532  257889887443

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.10  E-value=0.0073  Score=57.41  Aligned_cols=109  Identities=18%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhcc-CCCeEE-EEcCC-------CCChhHHHh----cC-------ceecCCHHhhc
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRV-------KMDPQLEKE----TG-------AKFEEDLDTML  171 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~-~G~~V~-~~dr~-------~~~~~~~~~----~g-------~~~~~~l~ell  171 (304)
                      +.++.|++|.|.|+|++|+.+++.|.. .|.+|+ +.|.+       ....+...+    .+       .+.. +.++++
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil  282 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELL  282 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-Cchhhh
Confidence            447899999999999999999999998 999987 44442       222222211    11       1222 345554


Q ss_pred             -CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          172 -PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       172 -~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       ..||+++-|...     +.++.+....++ -.+++-.+.+++ . .+-.+.|.+..+.
T Consensus       283 ~~~~DIliP~A~~-----n~i~~~~a~~l~-ak~V~EgAN~p~-t-~~a~~~l~~~Gi~  333 (415)
T 2tmg_A          283 ELDVDILVPAALE-----GAIHAGNAERIK-AKAVVEGANGPT-T-PEADEILSRRGIL  333 (415)
T ss_dssp             TCSCSEEEECSST-----TSBCHHHHTTCC-CSEEECCSSSCB-C-HHHHHHHHHTTCE
T ss_pred             cCCCcEEEecCCc-----CccCcccHHHcC-CeEEEeCCCccc-C-HHHHHHHHHCCCE
Confidence             479999988753     466777777773 456666667775 3 3334556666665

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00058  Score=63.00  Aligned_cols=91  Identities=16%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhcC-----cCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTMLP-----KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------~~l~ell~-----~aDvVi~~~p~  183 (304)
                      .|++|.|+|. |.||..+++.++..|++|++.+++....+.+++.|....      +++.+.+.     ..|+++.+...
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            5789999999 899999999999999999999987766666666665321      23333332     47999888763


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      .+.     -...++.|+++..+|+++..
T Consensus       249 ~~~-----~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EAA-----IEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHH-----HHHHTTSEEEEEEEEECCCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEeCC
Confidence            222     25667888999999998753

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.10  E-value=0.0013  Score=59.87  Aligned_cols=92  Identities=20%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-----HHHh---c--C--ceecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---T--G--AKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-----~~~~---~--g--~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|||.|.+|..+|..|...|.  +|..||+++...+     ....   +  .  +....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            489999999999999999987777  8999998753221     0011   1  1  222345 7889999999998753


Q ss_pred             C--h-hhh-ccc--cH-------HHHhcCCCCCEEEEcCC
Q 021995          184 T--E-KTR-GMF--DK-------DRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~--~-~t~-~~i--~~-------~~l~~mk~g~ilVn~~r  210 (304)
                      .  + .++ .++  |.       +.+....|++++++++.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            2  1 111 111  11       23344578999999984

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=97.10  E-value=0.0057  Score=56.98  Aligned_cols=131  Identities=18%  Similarity=0.227  Sum_probs=90.5

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++                    + .+.|.+|+++|=|  +++++++.
T Consensus       139 lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~--------------------g-~l~gl~va~vGD~~~rva~Sl~~  195 (359)
T 2w37_A          139 LARDSGVPVWNGLTDEWHPT--QMLADFMTVKENF--------------------G-KLQGLTLTFMGDGRNNVANSLLV  195 (359)
T ss_dssp             HHHHSSSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHHh--------------------C-CcCCeEEEEECCCccchHHHHHH
Confidence            45566899999765433332  2445555554421                    1 4889999999986  99999999


Q ss_pred             HhccCCCeEEEEcCCCC-Chh-H---H----HhcC--ceecCCHHhhcCcCCEEEEcCCC--C----hh-----hhcccc
Q 021995          135 RLKPFNCNLLYHDRVKM-DPQ-L---E----KETG--AKFEEDLDTMLPKCDIVVVNTPL--T----EK-----TRGMFD  192 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~-~~~-~---~----~~~g--~~~~~~l~ell~~aDvVi~~~p~--~----~~-----t~~~i~  192 (304)
                      .+..+|++|.+..|... +.+ .   +    ++.|  +....++++.++++|+|....=.  .    ++     ...-++
T Consensus       196 ~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~  275 (359)
T 2w37_A          196 TGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVN  275 (359)
T ss_dssp             HHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBC
T ss_pred             HHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccC
Confidence            99999999999988642 222 2   1    1445  44568999999999999874420  1    00     124568


Q ss_pred             HHHHhcCC---CCCEEEEcCC
Q 021995          193 KDRIAKMK---KGVLIVNNAR  210 (304)
Q Consensus       193 ~~~l~~mk---~g~ilVn~~r  210 (304)
                      .+.++.+|   ++++|..+.-
T Consensus       276 ~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          276 MEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             HHHHHTTCCCGGGCEEEECSC
T ss_pred             HHHHHhhCCCCCCEEEECCCC
Confidence            88999898   8999988863

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.09  E-value=0.00037  Score=65.09  Aligned_cols=90  Identities=24%  Similarity=0.295  Sum_probs=68.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhcC--------cCCEEEEcC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP--------KCDIVVVNT  181 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~--------~aDvVi~~~  181 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+...     .++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            58899999999999999999999999 89999987766777778886432     23333222        489998887


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ...+.     -...++.++++..+|.++-
T Consensus       262 G~~~~-----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVAET-----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCHHH-----HHHHHHHEEEEEEEEECSC
T ss_pred             CCHHH-----HHHHHHHhccCCEEEEEec
Confidence            63221     2567788899999998874

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.08  E-value=0.00061  Score=61.92  Aligned_cols=87  Identities=15%  Similarity=0.152  Sum_probs=65.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-CCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      .|++|.|+|.|.+|...++.++.+|++|++.+ ++.+.+.++++|+... .+.+++-...|+++-++... .+     ..
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~-~~-----~~  214 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQ-NA-----AA  214 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCch-hH-----HH
Confidence            68899999999999999999999999999999 7778888888887532 22333345689998877632 11     34


Q ss_pred             HHhcCCCCCEEEEcC
Q 021995          195 RIAKMKKGVLIVNNA  209 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~  209 (304)
                      .++.++++..+|.++
T Consensus       215 ~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          215 LVPSLKANGHIICIQ  229 (315)
T ss_dssp             TGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCEEEEEe
Confidence            577888999888885

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.08  E-value=0.00052  Score=66.59  Aligned_cols=115  Identities=15%  Similarity=0.154  Sum_probs=72.2

Q ss_pred             CCEEEEEeeChh--hHHHHHHhc---cC-CCeEEEEcCCCCChhHHH--------hc----CceecCCHHhhcCcCCEEE
Q 021995          117 GKTVGTVGCGRI--GKLLLQRLK---PF-NCNLLYHDRVKMDPQLEK--------ET----GAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       117 g~~vgIIG~G~I--G~~lA~~l~---~~-G~~V~~~dr~~~~~~~~~--------~~----g~~~~~~l~ell~~aDvVi  178 (304)
                      .++|+|||.|.+  |.+++..|.   ++ |.+|..||++....+...        ..    .+....++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            468999999997  455565553   33 889999999753222111        11    1233468888899999999


Q ss_pred             EcCCCCh---------------------hhh-------cc--------ccH---HHHhcCCCCCEEEEcCCCchhchHHH
Q 021995          179 VNTPLTE---------------------KTR-------GM--------FDK---DRIAKMKKGVLIVNNARGAIMDTQAV  219 (304)
Q Consensus       179 ~~~p~~~---------------------~t~-------~~--------i~~---~~l~~mk~g~ilVn~~rg~~vd~~aL  219 (304)
                      +++|...                     +|.       ++        +-.   +.+....|++++||++..--+-+.++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997410                     110       00        001   22344468999999998766666666


Q ss_pred             HHHHHcCCceEEE
Q 021995          220 VDACSSGHIAGYS  232 (304)
Q Consensus       220 ~~aL~~g~i~ga~  232 (304)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            55 5566666653

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.08  E-value=0.0003  Score=66.14  Aligned_cols=67  Identities=19%  Similarity=0.271  Sum_probs=52.5

Q ss_pred             CEEEEEeeC-hhhHHHHHHhccC-CCeEE-EEcCCCCCh-hHHHhcCceecCCHHhhcCc--CCEEEEcCCCC
Q 021995          118 KTVGTVGCG-RIGKLLLQRLKPF-NCNLL-YHDRVKMDP-QLEKETGAKFEEDLDTMLPK--CDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G-~IG~~lA~~l~~~-G~~V~-~~dr~~~~~-~~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~  184 (304)
                      .+|||||+| .+|+..+..+... +++++ ++|+++... +.++++|+..+.++++++++  .|+|++++|..
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~   75 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQ   75 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcH
Confidence            489999999 9999999888764 67765 778865433 34456688778899999874  99999999954

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.06  E-value=0.00084  Score=61.99  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=60.6

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhH----HHh------cCceecCCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL----EKE------TGAKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~----~~~------~g~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      .++|+|||.|.||..+|..|...|.  +|..+|++..+.+.    ...      .++....+..+.+++||+|+++.+..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            5689999999999999999987776  89999986432221    111      11222223346789999999987532


Q ss_pred             --hh-hh-ccc--c----H---HHHhcCCCCCEEEEcCCCc
Q 021995          185 --EK-TR-GMF--D----K---DRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       185 --~~-t~-~~i--~----~---~~l~~mk~g~ilVn~~rg~  212 (304)
                        +. ++ .++  |    +   +.+....|++++++++..-
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPv  125 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPV  125 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChH
Confidence              11 11 111  1    1   1233346899999998543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.05  E-value=0.00027  Score=62.69  Aligned_cols=92  Identities=21%  Similarity=0.183  Sum_probs=61.7

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC-------------------CChhHHH----hc--Cc--ee-
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-------------------MDPQLEK----ET--GA--KF-  163 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~-------------------~~~~~~~----~~--g~--~~-  163 (304)
                      ..|.+++|.|||+|.+|..+++.|...|. +++++|++.                   .+.+.+.    +.  .+  .. 
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            36889999999999999999999999997 799999875                   1222111    11  11  11 


Q ss_pred             ---c--CCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEc
Q 021995          164 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       164 ---~--~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                         .  ++++++++++|+|+.+++ +.+++..+++...+.   +.-+|+.
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence               1  134567888999998886 456666666554442   3335554

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=97.05  E-value=0.0094  Score=55.46  Aligned_cols=142  Identities=11%  Similarity=0.127  Sum_probs=87.8

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccc-ccccccccccCCCEEEEEeeC-hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCG-RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~-~~~~~~~~~L~g~~vgIIG~G-~IG~~lA~  134 (304)
                      .++..+|+|.|.-+....++  .+|+-++.+.+++         |.+.. .........|.|.+|++||=+ ++.++++.
T Consensus       138 lA~~s~vPVINag~d~~HPt--QaLaDl~TI~E~~---------G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~  206 (353)
T 3sds_A          138 LAKHSSVPVINALCDTFHPL--QAIADFLTIHESF---------ASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAI  206 (353)
T ss_dssp             HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHT---------C--------CTTCCSCTTCEEEEESCCCHHHHHHHH
T ss_pred             HHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHh---------CCCcccccccccccccCCCEEEEECCCchHHHHHHH
Confidence            45668899999854332221  2344445554432         11100 000112345899999999965 58888888


Q ss_pred             HhccCCCeEEEEcCCCC--ChhHHH---hc--------CceecCCHHhhcCcCCEEEEcC--CCChh----------hhc
Q 021995          135 RLKPFNCNLLYHDRVKM--DPQLEK---ET--------GAKFEEDLDTMLPKCDIVVVNT--PLTEK----------TRG  189 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~--~~~~~~---~~--------g~~~~~~l~ell~~aDvVi~~~--p~~~~----------t~~  189 (304)
                      .+..+|++|.+..|...  +.+...   +.        ++....++++.++++|+|..-.  +...+          ...
T Consensus       207 ~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y  286 (353)
T 3sds_A          207 AATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDF  286 (353)
T ss_dssp             HHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTTC
T ss_pred             HHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCc
Confidence            89999999999988653  222211   11        3445679999999999998743  21111          113


Q ss_pred             cccHHHHhc--CCCCCEEEEcC
Q 021995          190 MFDKDRIAK--MKKGVLIVNNA  209 (304)
Q Consensus       190 ~i~~~~l~~--mk~g~ilVn~~  209 (304)
                      -++.+.++.  +|++++|..+.
T Consensus       287 ~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          287 KVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CBCHHHHHHHTCCTTCEEEECS
T ss_pred             eecHHHHhhcccCCCcEEECCC
Confidence            578888888  88899888775

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.05  E-value=0.0003  Score=64.84  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHhcCceecCCHH-------hhcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLD-------TMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~~~~~l~-------ell~--~aDvVi~~~p~~  184 (304)
                      .|++|.|+|.|.+|...++.++.+  |++|++.++++.+.+.++++|+..+-+..       ++..  ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            789999999999999999999998  99999999876666677777864322221       2221  579998888642


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +.     -...++.++++..+|.++.
T Consensus       250 ~~-----~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          250 ET-----TYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHhhcCCEEEEeCC
Confidence            12     1466778888888888863

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.04  E-value=0.00048  Score=65.93  Aligned_cols=67  Identities=13%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             CEEEEEee----ChhhHHHHHHhccC--CCeE-EEEcCCCCChh-HHHhcCce---ecCCHHhhcC--cCCEEEEcCCCC
Q 021995          118 KTVGTVGC----GRIGKLLLQRLKPF--NCNL-LYHDRVKMDPQ-LEKETGAK---FEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~----G~IG~~lA~~l~~~--G~~V-~~~dr~~~~~~-~~~~~g~~---~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      .+|||||+    |.||+..++.++..  ++++ .++|+++...+ .++.+|+.   .+.+++++++  +.|+|++++|..
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence            58999999    99999999999876  7886 47888654332 34455653   6679999986  699999999954

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.03  E-value=0.00048  Score=65.14  Aligned_cols=68  Identities=19%  Similarity=0.287  Sum_probs=50.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccC---------CCeEE-EEcCCCCCh-hHHHhcCc-eecCCHHhhcC--cCCEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF---------NCNLL-YHDRVKMDP-QLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~---------G~~V~-~~dr~~~~~-~~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~  183 (304)
                      .+|||||+|.||+..++.++..         +++|+ ++|+++... +.+++++. ..+.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            3899999999999888877643         45655 678865433 34456676 46789999985  58999999995


Q ss_pred             Ch
Q 021995          184 TE  185 (304)
Q Consensus       184 ~~  185 (304)
                      ..
T Consensus       107 ~~  108 (412)
T 4gqa_A          107 HL  108 (412)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=97.02  E-value=0.0017  Score=59.45  Aligned_cols=130  Identities=21%  Similarity=0.317  Sum_probs=86.5

Q ss_pred             HHHhCCcEEEEcC-CCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee---ChhhHHH
Q 021995           57 AAAAAGLTVAEVT-GSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC---GRIGKLL  132 (304)
Q Consensus        57 ~~~~~gI~v~n~~-g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~---G~IG~~l  132 (304)
                      .++-.+++|.|.- |....++  .+|+-++.+.+++                    | .+.|.+|+++|=   |++.+++
T Consensus       117 la~~~~vPVINag~g~~~HPt--Q~LaDl~Ti~e~~--------------------g-~l~gl~va~vGD~~~~rva~Sl  173 (308)
T 1ml4_A          117 AAEVAEVPVINAGDGSNQHPT--QTLLDLYTIKKEF--------------------G-RIDGLKIGLLGDLKYGRTVHSL  173 (308)
T ss_dssp             HHHTCSSCEEEEEETTSCCHH--HHHHHHHHHHHHS--------------------S-CSSSEEEEEESCTTTCHHHHHH
T ss_pred             HHHhCCCCEEeCccCCccCcH--HHHHHHHHHHHHh--------------------C-CCCCeEEEEeCCCCcCchHHHH
Confidence            3455679999963 3332222  2344445554421                    1 478999999997   5899999


Q ss_pred             HHHhccCCCeEEEEcCCCC-Chh-H---HHhcCc--eecCCHHhhcCcCCEEEEcCCCC------hhh-----hccccHH
Q 021995          133 LQRLKPFNCNLLYHDRVKM-DPQ-L---EKETGA--KFEEDLDTMLPKCDIVVVNTPLT------EKT-----RGMFDKD  194 (304)
Q Consensus       133 A~~l~~~G~~V~~~dr~~~-~~~-~---~~~~g~--~~~~~l~ell~~aDvVi~~~p~~------~~t-----~~~i~~~  194 (304)
                      +..+..+|++|.+..|... +.+ .   +++.|.  ....++++.++++|+|....-..      ++.     ..-++.+
T Consensus       174 ~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~  253 (308)
T 1ml4_A          174 AEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLK  253 (308)
T ss_dssp             HHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTT
T ss_pred             HHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHH
Confidence            9999999999999988642 222 1   223354  34578999999999998754321      111     2346778


Q ss_pred             HHhcCCCCCEEEEcC
Q 021995          195 RIAKMKKGVLIVNNA  209 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~  209 (304)
                      .++.+|++++|..+.
T Consensus       254 ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          254 VLEKAKDELRIMHPL  268 (308)
T ss_dssp             GGGGSCTTCEEECCS
T ss_pred             HHhhcCCCCEEECCC
Confidence            888888888887764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.02  E-value=0.0028  Score=58.40  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=64.8

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-----HHHh-----cC--ceecCCHHhhcCcCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE-----TG--AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-----~~~~-----~g--~~~~~~l~ell~~aDvVi~~~  181 (304)
                      +..++|+|||.|.+|..+|..|...|+ +|..+|+++...+     ....     ..  +....+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999987777 9999999764332     1111     11  2223455 7899999999986


Q ss_pred             CCC--hh-hhc-cc--cH-------HHHhcCCCCCEEEEcCCCchhchHHH
Q 021995          182 PLT--EK-TRG-MF--DK-------DRIAKMKKGVLIVNNARGAIMDTQAV  219 (304)
Q Consensus       182 p~~--~~-t~~-~i--~~-------~~l~~mk~g~ilVn~~rg~~vd~~aL  219 (304)
                      +..  +. ++. ++  |.       +.+....|++++++++..-=+....+
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~  134 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL  134 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH
Confidence            432  11 110 11  11       12223358999999986443333333

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.00  E-value=0.0022  Score=58.85  Aligned_cols=95  Identities=12%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhH-HHh---------cCceec-CCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKE---------TGAKFE-EDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~-~~~---------~g~~~~-~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||.|.||..+|..+...|.  +|..+|+++...+. +.+         ...... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            489999999999999998876666  89999997643221 101         012211 24567899999999997543


Q ss_pred             hh-----------hhcccc--HHHHhcCCCCCEEEEcCCCc
Q 021995          185 EK-----------TRGMFD--KDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       185 ~~-----------t~~~i~--~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ..           +..++.  .+.+....|++++++++..-
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPv  121 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL  121 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSH
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCch
Confidence            21           111110  12234456899999998543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.00  E-value=0.0005  Score=63.56  Aligned_cols=89  Identities=20%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHh----hcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll~--~aDvVi~~~p~  183 (304)
                      .|++|.|+|.|.+|...++.++..|+ +|++.++++.+.+.++++|+..+     .++.+    +..  ..|+++-++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            58899999999999999999999999 79999987666677788886432     12222    222  48999888764


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .+.     -...++.++++..++.++
T Consensus       246 ~~~-----~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          246 VHT-----FAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TTH-----HHHHHHHEEEEEEEEECC
T ss_pred             hHH-----HHHHHHHHhcCCEEEEec
Confidence            322     256778889999998886

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.97  E-value=0.0021  Score=59.18  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=60.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHh---------cC--ceecCCHHhhcCcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------TG--AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~---------~g--~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ..++|+|||.|.+|..+|..+...|. +|..+|+++...+ .+.+         ..  +....+ .+.+++||+|+++.+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence            45799999999999999999876666 9999999764322 1111         01  122234 478999999999864


Q ss_pred             CC--hh---------hhccccH--HHHhcCCCCCEEEEcCCC
Q 021995          183 LT--EK---------TRGMFDK--DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~--~~---------t~~~i~~--~~l~~mk~g~ilVn~~rg  211 (304)
                      ..  +.         +..++..  +.+....|++++++++..
T Consensus        83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP  124 (321)
T 3p7m_A           83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNP  124 (321)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence            32  11         1111100  122333588999999643

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.97  E-value=0.0095  Score=54.91  Aligned_cols=137  Identities=14%  Similarity=0.092  Sum_probs=89.5

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ  134 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~  134 (304)
                      .++..+|+|.|.-.....++  .+|+=++.+.+++..      .+        .....+.|.+|+++|=|  ++.++++.
T Consensus       117 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~------~~--------~~~~~l~gl~va~vGD~~~~va~Sl~~  180 (328)
T 3grf_A          117 MAQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA------AG--------EFSNGFKGIKFAYCGDSMNNVTYDLMR  180 (328)
T ss_dssp             HHHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH------TT--------CCTTTGGGCCEEEESCCSSHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC------cc--------ccccccCCcEEEEeCCCCcchHHHHHH
Confidence            45668899999755433332  234445555443210      00        01125899999999975  89999999


Q ss_pred             HhccCCCeEEEEcCCCC---Chh-H---HH----h--cC--ceecCCHHhhcCcCCEEEEcC----C-CCh--------h
Q 021995          135 RLKPFNCNLLYHDRVKM---DPQ-L---EK----E--TG--AKFEEDLDTMLPKCDIVVVNT----P-LTE--------K  186 (304)
Q Consensus       135 ~l~~~G~~V~~~dr~~~---~~~-~---~~----~--~g--~~~~~~l~ell~~aDvVi~~~----p-~~~--------~  186 (304)
                      .+..+|++|.+..|...   +.+ .   ++    +  .|  +....++++.++++|+|...+    . ..+        -
T Consensus       181 ~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~  260 (328)
T 3grf_A          181 GCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVL  260 (328)
T ss_dssp             HHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHH
T ss_pred             HHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHh
Confidence            99999999999988542   221 1   11    2  34  345679999999999998642    2 111        0


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ...-++.+.++.+|++++|..+.
T Consensus       261 ~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          261 TPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             GGGCBCHHHHTTSCTTCEEEECS
T ss_pred             cCCCCCHHHHHhcCCCCEEECCC
Confidence            12347889999999999998875

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.95  E-value=0.0077  Score=57.32  Aligned_cols=109  Identities=14%  Similarity=0.242  Sum_probs=72.6

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHHHhc----C------ceecCCHHhh-cC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKET----G------AKFEEDLDTM-LP  172 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~~~~----g------~~~~~~l~el-l~  172 (304)
                      +.++.|+||.|.|+|++|+.+|+.|...|.+|+ +.|.+       ....+...++    |      .+.. +.+++ -.
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~  294 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEK  294 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHS
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceec
Confidence            447899999999999999999999999999975 45544       2222222221    1      2222 33443 35


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .||+++-|..     .+.|+.+....++ -.+++-.+.+++ . .+..+.|.+..|.
T Consensus       295 ~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t-~eA~~iL~~rGI~  343 (424)
T 3k92_A          295 DCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-T-IDATKILNERGVL  343 (424)
T ss_dssp             CCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-C-HHHHHHHHHTTCE
T ss_pred             cccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-C-HHHHHHHHHCCCE
Confidence            7999998875     3566677666673 466777777775 3 4445667777665

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.95  E-value=0.0016  Score=59.80  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=68.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhH-HHh---------cCceecCCHHhhcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKE---------TGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~-~~~---------~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ...+|+|||.|.+|..++..|...|  .+|..+|.+....+. ..+         .......+..+.+++||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            3469999999999999999887656  489999986422211 111         1111112346779999999999864


Q ss_pred             Chhh---h--------cccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          184 TEKT---R--------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       184 ~~~t---~--------~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                      ....   +        .++.  .+.+....|++++++++..-=+....+.+.  +...++.|.
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence            3211   0        1110  012233478999999874433334444343  333456555

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.94  E-value=0.00044  Score=64.43  Aligned_cols=90  Identities=19%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc----C-cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----P-KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell----~-~aDvVi~~~p~~  184 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+...     .++.+.+    . ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            58899999999999999999999999 69999987766677777776421     1222222    1 479998887632


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +.     -...++.++++..+|.++-
T Consensus       270 ~~-----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 EI-----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HH-----HHHHHHTEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEeCC
Confidence            21     1567788899988888864

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.94  E-value=0.00064  Score=58.91  Aligned_cols=67  Identities=18%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             CCEEEEEeeChhhHHHHHH--hccCCCeEE-EEcCCCCChhH-HHhcCceecCCHHhhcC-cCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQR--LKPFNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLP-KCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~--l~~~G~~V~-~~dr~~~~~~~-~~~~g~~~~~~l~ell~-~aDvVi~~~p~~  184 (304)
                      .++|+|||+|.+|+.+++.  ... |++++ ++|.++..... .....+...++++++++ +.|+|++|+|..
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            3589999999999999996  335 88855 66776543321 22223334678888887 589999999943

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.93  E-value=0.0083  Score=57.13  Aligned_cols=110  Identities=21%  Similarity=0.319  Sum_probs=69.9

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHHHhc----Cc------------eecCCH
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKET----GA------------KFEEDL  167 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~~~~----g~------------~~~~~l  167 (304)
                      +.++.|++|.|.|+|++|+.++++|...|++|+ +.|.+       ....+...++    +.            ..+.+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            447899999999999999999999999999987 44442       2122222221    11            112122


Q ss_pred             Hhhc-CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          168 DTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       168 ~ell-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++++ ..||+++-|.-     .+.|+.+..+.++ =.+++-.+.+++ . .+-.+.|.+..+.
T Consensus       285 ~~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~-t-~~a~~~l~~~Gi~  339 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-T-PEAERILYERGVV  339 (421)
T ss_dssp             TGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-C-HHHHHHHHTTTCE
T ss_pred             hhhhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcC-C-HHHHHHHHHCCCE
Confidence            3443 47999988873     3455666666664 356666666665 3 3344667777666

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.92  E-value=0.00032  Score=59.19  Aligned_cols=89  Identities=13%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCH-H---hhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL-D---TML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l-~---ell--~~aDvVi~~~p~  183 (304)
                      .|++|.|+| .|.||..+++.++..|++|++.+++....+..++.|....     .+. +   +..  ...|+++.+.. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            578999999 6999999999999999999999986544444445554211     111 1   112  24788877664 


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .+.     -...++.|+++..+|+++.
T Consensus       117 ~~~-----~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          117 GEA-----IQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             THH-----HHHHHHTEEEEEEEEECSC
T ss_pred             hHH-----HHHHHHHhccCCEEEEEcC
Confidence            111     2566777888888888864

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.91  E-value=0.0077  Score=57.97  Aligned_cols=110  Identities=21%  Similarity=0.266  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcC-------CCCChhHH------H--------hc-----Cceec
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDR-------VKMDPQLE------K--------ET-----GAKFE  164 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr-------~~~~~~~~------~--------~~-----g~~~~  164 (304)
                      +.+|.|+||.|-|+|++|+.+|+.|...|.+|+ +.|.       .....+..      +        .+     ++++.
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            457899999999999999999999999999987 4443       23222211      0        00     22222


Q ss_pred             CCHHh-hcCcCCEEEEcCCCChhhhccccHHHHhcC-CCCC-EEEEcCCCchhchHHHHHHHHcCCce
Q 021995          165 EDLDT-MLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGV-LIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       165 ~~l~e-ll~~aDvVi~~~p~~~~t~~~i~~~~l~~m-k~g~-ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +. ++ +-..||+++-|..     .+.|+.+..+.+ ++++ +++-.+.+++ ..++ .+.|.+..|.
T Consensus       327 ~~-~~~~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 PN-EKPWGVPCTLAFPCAT-----QNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNII  386 (470)
T ss_dssp             SS-CCTTSSCCSEEEECSS-----TTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cC-cCeeecCccEEEeccc-----cCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcE
Confidence            11 22 2336888887763     345655555555 2233 4555555654 4444 5667777666

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.90  E-value=0.012  Score=55.89  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHHH----hcC-ce--ecCCHHhh-cCcCC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK----ETG-AK--FEEDLDTM-LPKCD  175 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~~----~~g-~~--~~~~l~el-l~~aD  175 (304)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+       ....+...    +.+ +.  .. +-+++ -..||
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~D  291 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAE  291 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCS
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCce
Confidence            347899999999999999999999999999988 55542       22222222    122 11  11 11233 34799


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +++-|..     .+.++.+..+.++ =.+++..+.+++-  .+-.+.|.+..|.
T Consensus       292 VliP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t--~~A~~~L~~~Gi~  337 (419)
T 3aoe_E          292 VLVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN--PEAEAYLLGKGAL  337 (419)
T ss_dssp             EEEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC--HHHHHHHHHHTCE
T ss_pred             EEEeccc-----ccccccchHhhCC-ceEEEECCCCcCC--HHHHHHHHHCCCE
Confidence            9998864     3567777777775 3588888888863  3344566666665

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.89  E-value=0.0013  Score=60.28  Aligned_cols=89  Identities=20%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDvVi~~~p~  183 (304)
                      .|++|.|+| .|.+|..+++.++..|++|++.+++..+.+.++++|....     .++.+    +.  ...|+++.++..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            688999999 8999999999999999999999987666666777775421     12222    11  247888887763


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       +     .-...++.++++..+|.++.
T Consensus       228 -~-----~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          228 -D-----TFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             -G-----GHHHHHHHEEEEEEEEECCC
T ss_pred             -H-----HHHHHHHHhccCCEEEEEcC
Confidence             1     12567788888888888863

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.89  E-value=0.00078  Score=62.07  Aligned_cols=88  Identities=19%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~e----ll~--~aDvVi~~~p~~  184 (304)
                      .|++|.|+|. |.||..+++.++.+|++|++.+++....+.++++|....    .++.+    +..  ..|+++-++...
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            6889999998 999999999999999999999987777777777776422    22322    222  489998887642


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                            .-...+..++++..+|.++
T Consensus       239 ------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          239 ------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC-
T ss_pred             ------HHHHHHHhhcCCCEEEEEE
Confidence                  1256778889999999886

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.88  E-value=0.0023  Score=59.02  Aligned_cols=97  Identities=18%  Similarity=0.127  Sum_probs=60.5

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHh--c------CceecCCHHhhcCcCCEEEEcCCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE--T------GAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~--~------g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      -.+++|+|||.|.||..+|..|...|.  ++..+|++....+ .+.+  .      ......+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            356799999999999999999987666  8999998642221 0111  1      122223445779999999998653


Q ss_pred             C--h-hhh-ccc--c----H---HHHhcCCCCCEEEEcCCC
Q 021995          184 T--E-KTR-GMF--D----K---DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~--~-~t~-~~i--~----~---~~l~~mk~g~ilVn~~rg  211 (304)
                      .  + .++ .++  |    .   +.+....|++++++++..
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP  127 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP  127 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence            2  1 111 111  1    1   223445689999999754

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.88  E-value=0.0012  Score=59.76  Aligned_cols=105  Identities=15%  Similarity=0.185  Sum_probs=70.7

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhcccc
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++|+|+|+ |++|+.+++.++..|++++ .++|.....   ...|...+.+++++..  ..|++++++|.. .+...+ 
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~---~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~~~~~~-   81 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM---EVLGVPVYDTVKEAVAHHEVDASIIFVPAP-AAADAA-   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHSCCSEEEECCCHH-HHHHHH-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc---eECCEEeeCCHHHHhhcCCCCEEEEecCHH-HHHHHH-
Confidence            468999998 9999999999988899843 666643111   1346777788999988  899999999843 222222 


Q ss_pred             HHHHhcCCCCC-EEEEcCCCch-hchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGV-LIVNNARGAI-MDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~-ilVn~~rg~~-vd~~aL~~aL~~g~i~  229 (304)
                      ++..+   .|. .+|..+.|-. .+++.+.++.++..+.
T Consensus        82 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           82 LEAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22222   232 2555666632 3556788888776664

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.88  E-value=0.0019  Score=59.64  Aligned_cols=68  Identities=28%  Similarity=0.317  Sum_probs=47.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcCc------------------eecCCHHhhcCcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA------------------KFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~------------------~~~~~l~ell~~aDv  176 (304)
                      .+|||+|+|.||+.+++.+... ++++. +.|+++.... .++..|+                  ....++++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3899999999999999998764 56765 5566543222 2223331                  233578888889999


Q ss_pred             EEEcCCCCh
Q 021995          177 VVVNTPLTE  185 (304)
Q Consensus       177 Vi~~~p~~~  185 (304)
                      |+.|+|...
T Consensus        83 V~~aTp~~~   91 (334)
T 2czc_A           83 IVDATPGGI   91 (334)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCccc
Confidence            999999653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.87  E-value=0.00067  Score=62.36  Aligned_cols=89  Identities=15%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             CCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDvVi~~~p~  183 (304)
                      .|++|.|+|.| .+|..+++.++..|++|++.+++....+.++++|....     .++.+    +.  ...|+++-++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            68899999997 89999999999999999999998888888888876422     22222    22  258999888763


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      . .+     .+.+..++++..+|.++-
T Consensus       224 ~-~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 P-DG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             H-HH-----HHHHHTEEEEEEEEECCC
T ss_pred             h-hH-----HHHHHHhcCCCEEEEEee
Confidence            2 11     345578899999999874

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.86  E-value=0.002  Score=58.25  Aligned_cols=102  Identities=18%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             CEEEEEeeChhhHHHHHHhcc----CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhcc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP----FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~----~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~  190 (304)
                      .+|||||+|.||+..++.+..    -+++++ ++|++..    ++..|+. +.+++++++  +.|+|++++|.....   
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~---   79 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----GSLDEVR-QISLEDALRSQEIDVAYICSESSSHE---   79 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHH---
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHH---
Confidence            489999999999999988865    367755 6676532    2234554 368999986  689999999954321   


Q ss_pred             ccHHHHhcCCCCC-EEEEc-CCCchhchHHHHHHHHcCCce
Q 021995          191 FDKDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       191 i~~~~l~~mk~g~-ilVn~-~rg~~vd~~aL~~aL~~g~i~  229 (304)
                        +...+.++.|. +++.- .--.+-+.++|.++.++..+.
T Consensus        80 --~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           80 --DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             --HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence              23334455555 55542 122344556777777665544

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.86  E-value=0.001  Score=64.52  Aligned_cols=115  Identities=16%  Similarity=0.110  Sum_probs=70.7

Q ss_pred             CCEEEEEeeChh-hHHHHHHhcc----C-CCeEEEEcCCCCChhHH----H----hcC----ceecCCHHhhcCcCCEEE
Q 021995          117 GKTVGTVGCGRI-GKLLLQRLKP----F-NCNLLYHDRVKMDPQLE----K----ETG----AKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       117 g~~vgIIG~G~I-G~~lA~~l~~----~-G~~V~~~dr~~~~~~~~----~----~~g----~~~~~~l~ell~~aDvVi  178 (304)
                      .++|+|||.|.. |.+++..|..    + +.+|..||++....+..    .    ..+    +....++++.+++||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            459999999998 5556655543    3 66899999975322211    1    111    233468888999999999


Q ss_pred             EcCCCChh---hh----------------------------cccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          179 VNTPLTEK---TR----------------------------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       179 ~~~p~~~~---t~----------------------------~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      +++|....   ++                            .++.  .+.+....|++++||++..--+-+.++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11                            0110  122334468999999997765555555554434


Q ss_pred             CCceEE
Q 021995          226 GHIAGY  231 (304)
Q Consensus       226 g~i~ga  231 (304)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            455554

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.86  E-value=0.003  Score=57.83  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEee---ChhhHHHHHHhccC-CCeEEEEcCCCC-ChhH----HHhcCc--eecCCHHhhcCcCCEEEEcCC
Q 021995          114 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-DPQL----EKETGA--KFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~-G~~V~~~dr~~~-~~~~----~~~~g~--~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+.|.+|+++|=   |++.++++..+..+ |++|.+..|... +.+.    +++.|.  ....++++.++++|+|....-
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            478999999997   59999999999999 999999988642 2221    223354  345789999999999987643


Q ss_pred             CCh-----hh-----hccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTE-----KT-----RGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~-----~t-----~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..+     +.     ..-++.+.++.+|++++|..+.
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            211     10     2346778888888888887765

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.85  E-value=0.024  Score=51.70  Aligned_cols=128  Identities=20%  Similarity=0.303  Sum_probs=83.6

Q ss_pred             HHHhCCcEEEEcC-CCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee---ChhhHHH
Q 021995           57 AAAAAGLTVAEVT-GSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC---GRIGKLL  132 (304)
Q Consensus        57 ~~~~~gI~v~n~~-g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~---G~IG~~l  132 (304)
                      .++-.+|+|.|.- |....++  .+|+-++.+.+++                    | .+.|.+|++||=   |++.+++
T Consensus       113 lA~~~~vPVINag~g~~~HPt--Q~LaDl~Ti~e~~--------------------g-~l~glkva~vGD~~~~rva~Sl  169 (306)
T 4ekn_B          113 ASEYSQVPIINAGDGSNQHPT--QTLLDLYTIMREI--------------------G-RIDGIKIAFVGDLKYGRTVHSL  169 (306)
T ss_dssp             HHHHCSSCEEESCSSSSCCHH--HHHHHHHHHHHHH--------------------S-CSTTCEEEEESCTTTCHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHHh--------------------C-CcCCCEEEEEcCCCCCcHHHHH
Confidence            4556789999983 4333332  2344445554421                    1 478999999997   5899999


Q ss_pred             HHHhccC-CCeEEEEcCCCC-Ch-h---HHHhcCce--ecCCHHhhcCcCCEEEEcCCCC------hhh-----hccccH
Q 021995          133 LQRLKPF-NCNLLYHDRVKM-DP-Q---LEKETGAK--FEEDLDTMLPKCDIVVVNTPLT------EKT-----RGMFDK  193 (304)
Q Consensus       133 A~~l~~~-G~~V~~~dr~~~-~~-~---~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~------~~t-----~~~i~~  193 (304)
                      +..+..+ |++|.+..|... .+ +   .+++.|..  ...++++.++++|+|....-..      ++.     ..-++.
T Consensus       170 ~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~  249 (306)
T 4ekn_B          170 VYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKR  249 (306)
T ss_dssp             HHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCCGGGCCSHHHHHHHHHHHCBCH
T ss_pred             HHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcccccCCCHHHHHHhccCcEECH
Confidence            9999999 999999988542 22 2   22344543  3579999999999998753211      111     133566


Q ss_pred             HHHhcCCCCCEEEEcC
Q 021995          194 DRIAKMKKGVLIVNNA  209 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~  209 (304)
                      +.++.  ++++|..+.
T Consensus       250 ~~l~~--~~ai~mH~l  263 (306)
T 4ekn_B          250 EYVEG--KKFIIMHPL  263 (306)
T ss_dssp             HHHTT--CCCEEECCS
T ss_pred             HHHcC--CCCEEECCC
Confidence            66665  677776654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.85  E-value=0.001  Score=61.07  Aligned_cols=65  Identities=15%  Similarity=0.191  Sum_probs=48.1

Q ss_pred             CEEEEEeeChhhHHHHHHhc--cCCCeE-EEEcCCCCC--hhHHHhcCce-ecCCHHhhc-----CcCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLK--PFNCNL-LYHDRVKMD--PQLEKETGAK-FEEDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~--~~G~~V-~~~dr~~~~--~~~~~~~g~~-~~~~l~ell-----~~aDvVi~~~p  182 (304)
                      .+|||||+|.||+.+++.+.  .-++++ .++|+++..  ...++++|.. ...+.++++     .+.|+|+.++|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp   80 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence            48999999999999999984  346774 467887655  3445566764 245667775     45899999999

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.85  E-value=0.00069  Score=62.83  Aligned_cols=68  Identities=22%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--------CCeEE-EEcCCCCCh-hHHHhcCc-eecCCHHhhcCc--CCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--------NCNLL-YHDRVKMDP-QLEKETGA-KFEEDLDTMLPK--CDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--------G~~V~-~~dr~~~~~-~~~~~~g~-~~~~~l~ell~~--aDvVi~~~p~~  184 (304)
                      .+|||||+|.||+..++.++..        +++|. ++|+++... ..++++|+ ..+.+++++++.  .|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            4899999999999887766532        34654 778875333 34455675 456799999964  79999999954


Q ss_pred             h
Q 021995          185 E  185 (304)
Q Consensus       185 ~  185 (304)
                      .
T Consensus        87 ~   87 (390)
T 4h3v_A           87 S   87 (390)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=96.84  E-value=0.007  Score=58.59  Aligned_cols=107  Identities=21%  Similarity=0.327  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE--------cCCCCChhHHHh----cC-------ceecCCHHhhcCcC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEKE----TG-------AKFEEDLDTMLPKC  174 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~--------dr~~~~~~~~~~----~g-------~~~~~~l~ell~~a  174 (304)
                      +|.|+||.|-|+|++|+..|+.|...|++|+++        |+.....+...+    .|       .+...+ +=+-..|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~-~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG-SILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS-CGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc-ccccccc
Confidence            589999999999999999999999999998763        333333322221    11       122221 1133479


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      |+++-|..     .+.|+.+..+.++ -.+++-.+.+++ .. +-.+.|.+..|.
T Consensus       320 DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p~-T~-eA~~iL~~rGIl  366 (501)
T 3mw9_A          320 DILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGPT-TP-EADKIFLERNIM  366 (501)
T ss_dssp             SEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSCB-CH-HHHHHHHHTTCE
T ss_pred             eEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCcC-CH-HHHHHHHHCCCE
Confidence            99988764     4677777777775 456667777763 33 334566665554

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.84  E-value=0.0008  Score=62.98  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=65.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceec-C-C------HH----hhcC--cCCEEEEc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-E-D------LD----TMLP--KCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~-~-~------l~----ell~--~aDvVi~~  180 (304)
                      .|++|.|+|.|.+|...++.++.+| .+|++.++++.+.+.++++|+..+ + .      +.    ++..  ..|+|+-+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~  274 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  274 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence            5789999999999999999999999 599999987766677777776421 1 1      11    1222  57999888


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +...+.     -...++.++++..+|.++.
T Consensus       275 ~g~~~~-----~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          275 TGDSRA-----LLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             SSCTTH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence            764322     1466778888888888863

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.84  E-value=0.0011  Score=61.60  Aligned_cols=68  Identities=12%  Similarity=0.093  Sum_probs=50.8

Q ss_pred             CCEEEEEeeChhhH-HHHHHhccCCCeEE-EEcCCCCChh-HHHhcC-ceecCCHHhhcCc--CCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGK-LLLQRLKPFNCNLL-YHDRVKMDPQ-LEKETG-AKFEEDLDTMLPK--CDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~-~lA~~l~~~G~~V~-~~dr~~~~~~-~~~~~g-~~~~~~l~ell~~--aDvVi~~~p~~  184 (304)
                      -.+|||||+|.+|. .++..+..-+++++ ++|+++...+ .+++++ ...+.+++++++.  .|+|++++|..
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   99 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSS   99 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            45899999999995 56676666789955 7788764333 344555 4567899999976  89999999954

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.83  E-value=0.00056  Score=62.98  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=62.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVi~~~p~~  184 (304)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.++++.+.+.++++ ....     .++.+.+     ...|+++-++...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  242 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE  242 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH
Confidence            78899999999999999999999999 899999865444444443 3211     1332222     2578888887642


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +.     -...++.|+++..+|.++.
T Consensus       243 ~~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          243 AA-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEEec
Confidence            22     1456777888888888864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.81  E-value=0.00061  Score=58.24  Aligned_cols=91  Identities=11%  Similarity=0.146  Sum_probs=60.5

Q ss_pred             CEEEEEe-eChhhHHHHHHhc-cCCCeEEEEcCCCC-ChhHH--HhcCce-------ecCCHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLK-PFNCNLLYHDRVKM-DPQLE--KETGAK-------FEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~-~~G~~V~~~dr~~~-~~~~~--~~~g~~-------~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      ++|.|.| .|.||+.+++.|. ..|++|++.+|++. ..+..  ...++.       ..++++++++++|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            5799999 5999999999999 89999999998753 22222  111221       11345678899999998886431


Q ss_pred             hhhccccHHHHhcCCC-C-CEEEEcCCCc
Q 021995          186 KTRGMFDKDRIAKMKK-G-VLIVNNARGA  212 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~-g-~ilVn~~rg~  212 (304)
                       ..   ....++.|++ + ..||+++...
T Consensus        86 -~~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 -SD---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             -HH---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             -hh---HHHHHHHHHhcCCCeEEEEeece
Confidence             11   3455555542 2 4688887544

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.81  E-value=0.002  Score=59.64  Aligned_cols=91  Identities=11%  Similarity=0.101  Sum_probs=66.6

Q ss_pred             cCCCEEEEEeeChhhHHH-HHHh-ccCCCe-EEEEcCCCC---ChhHHHhcCceec----CCHHh---hcCcCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLL-LQRL-KPFNCN-LLYHDRVKM---DPQLEKETGAKFE----EDLDT---MLPKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~l-A~~l-~~~G~~-V~~~dr~~~---~~~~~~~~g~~~~----~~l~e---ll~~aDvVi~~~  181 (304)
                      ..+++|.|+|.|.+|... ++.+ +.+|++ |++.+++..   +.+.++++|+..+    .++.+   +-...|+|+-++
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~i~~~~gg~Dvvid~~  250 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEAT  250 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGGHHHHSCCEEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHHHHHhCCCCCEEEECC
Confidence            345899999999999999 9999 999998 999998776   6777788887543    12222   101478888887


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ...+.     -...++.++++..+|.++.
T Consensus       251 g~~~~-----~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          251 GFPKH-----AIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             CCHHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CChHH-----HHHHHHHHhcCCEEEEEeC
Confidence            63211     1466777888888888863

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.80  E-value=0.002  Score=59.35  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhH-HHhc--C------ceecCCHHhhcCcCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--G------AKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~-~~~~--g------~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ..++|+|||.|.+|..++..+...+.  ++..+|.+..+.+. +.++  .      .....+..+.+++||+|+++.+..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            34699999999999999998875554  89999986422211 1111  1      111123467799999999998643


Q ss_pred             hhh-----------hcccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          185 EKT-----------RGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       185 ~~t-----------~~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                      ..-           ..++.  .+.+....|++++++++..-=+....+.+.  +...++.|.
T Consensus        88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc
Confidence            211           01110  012223368999999854433333333333  333455554

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.79  E-value=0.0024  Score=59.23  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=43.5

Q ss_pred             EEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCCh-hHHHhcCceec-----------------CCHHhhcCcCCEEE
Q 021995          119 TVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDP-QLEKETGAKFE-----------------EDLDTMLPKCDIVV  178 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~-~~~~~~g~~~~-----------------~~l~ell~~aDvVi  178 (304)
                      +|||+|+|.||+.+++.+... ++++. +.|++.... ..+...++..+                 .++++++.++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            799999999999999998754 67765 455543221 22222232221                 23445566899999


Q ss_pred             EcCCCC
Q 021995          179 VNTPLT  184 (304)
Q Consensus       179 ~~~p~~  184 (304)
                      .|+|..
T Consensus        83 ~aTp~~   88 (340)
T 1b7g_O           83 DTTPNG   88 (340)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999854

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.79  E-value=0.0096  Score=57.05  Aligned_cols=110  Identities=18%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHHH------h-------------cCceec
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK------E-------------TGAKFE  164 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~~------~-------------~g~~~~  164 (304)
                      +.++.|+||.|-|+|++|+.+|+.|...|++|+ +.|.+       ....+...      +             .+.+..
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            457899999999999999999999999999976 55532       22222111      0             022222


Q ss_pred             CCHHh-hcCcCCEEEEcCCCChhhhccccHHHHhcCC--CCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          165 EDLDT-MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       165 ~~l~e-ll~~aDvVi~~~p~~~~t~~~i~~~~l~~mk--~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      + .++ +-..||+++-|..     .+.|+.+..+.+.  +=.+++-.+.+++-. + -.+.|.+..|.
T Consensus       314 ~-~~~i~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~T~-e-A~~iL~~rGI~  373 (456)
T 3r3j_A          314 E-NQKPWNIPCDIAFPCAT-----QNEINENDADLFIQNKCKMIVEGANMPTHI-K-ALHKLKQNNII  373 (456)
T ss_dssp             C-SCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHHTCCEEECCSSSCBCT-T-HHHHHHTTTCE
T ss_pred             C-CccccccCccEEEeCCC-----ccchhhHHHHHHHhcCCeEEEecCCCCCCH-H-HHHHHHHCCCE
Confidence            1 223 2346888887763     3567777666662  234555566666432 2 23555555554

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.78  E-value=0.0027  Score=59.19  Aligned_cols=94  Identities=15%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CCEEEEEe-eChhhHHHHHHhccCC------CeEEEEc-CCCCChhHH------H---hcCceecCCHHhhcCcCCEEEE
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLKPFN------CNLLYHD-RVKMDPQLE------K---ETGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~~~G------~~V~~~d-r~~~~~~~~------~---~~g~~~~~~l~ell~~aDvVi~  179 (304)
                      ..+|+|+| .|.+|+.+.+.|...+      .++..+. ++.......      .   +...... +.+ .+.++|+|++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~-~~~-~~~~~DvVf~   86 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPT-EAA-VLGGHDAVFL   86 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEEC-CHH-HHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccC-CHH-HhcCCCEEEE
Confidence            36899999 9999999999998766      4666654 322111111      0   1111112 333 3568999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHH
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA  218 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~a  218 (304)
                      |+|...      ..+..+.++.|+.+|+.|...-.+..+
T Consensus        87 alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~  119 (352)
T 2nqt_A           87 ALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAA  119 (352)
T ss_dssp             CCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHH
T ss_pred             CCCCcc------hHHHHHHHhCCCEEEEECCCccCCcch
Confidence            999653      345555556789999998655444434

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.77  E-value=0.0031  Score=57.86  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=73.2

Q ss_pred             CCEEEEEeeChhhHH-HHHHhccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhc-CcCCEEEEc--CCC-Chhh
Q 021995          117 GKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTML-PKCDIVVVN--TPL-TEKT  187 (304)
Q Consensus       117 g~~vgIIG~G~IG~~-lA~~l~~~G~~V~~~dr~~~~~--~~~~~~g~~~~--~~l~ell-~~aDvVi~~--~p~-~~~t  187 (304)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|.+..+.  +..++.|+...  .+.+++. .++|+|+..  +|. +|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            478999999999996 9999999999999999865322  33455676543  3445555 579999876  332 3322


Q ss_pred             h-------ccccH-HHHhc--CCCC-CEEEEcCCCchhchHHHHHHHHcCC
Q 021995          188 R-------GMFDK-DRIAK--MKKG-VLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       188 ~-------~~i~~-~~l~~--mk~g-~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      .       .++.+ +.+..  ++.. .+-|--+.|+.-...-+...|+...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            1       12332 34443  3332 4555556788888888888888754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.77  E-value=0.001  Score=62.29  Aligned_cols=67  Identities=22%  Similarity=0.356  Sum_probs=48.0

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH--HHhcCceecCC---HHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~--~~~~g~~~~~~---l~ell~~aDvVi~~  180 (304)
                      -+.|++|+|+|.|.+|+.+++.++.+|++|+++|+++..+..  +...-...+.+   +.++++++|+|+..
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            478999999999999999999999999999999986532211  11000011222   56788889998653

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.77  E-value=0.00067  Score=62.09  Aligned_cols=89  Identities=20%  Similarity=0.131  Sum_probs=63.3

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------~~l~ell-----~~aDvVi~~~p~  183 (304)
                      .|++|.|.|. |.||..+++.++..|++|++.+++....+.++++|....      .++.+.+     ...|+++.+...
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5889999998 999999999999999999999986544455555564211      2333222     247888877752


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       + +    -...++.++++..+|.++-
T Consensus       225 -~-~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 -E-F----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             -H-H----HHHHHTTEEEEEEEEECCC
T ss_pred             -H-H----HHHHHHHHhcCCEEEEEec
Confidence             1 1    2566788888888888864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.77  E-value=0.0031  Score=53.53  Aligned_cols=94  Identities=14%  Similarity=0.092  Sum_probs=60.0

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-CCHH----hhcCcCCEEEEcCCCC--h---h
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLD----TMLPKCDIVVVNTPLT--E---K  186 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~l~----ell~~aDvVi~~~p~~--~---~  186 (304)
                      ++|.|.|. |.||+.+++.|...|++|++.+|++.+.......++... .++.    +.+.++|+|+.+....  +   .
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            47899997 999999999999999999999997533222211233211 1221    6788999999887542  1   1


Q ss_pred             hhccccHHHHhcCC-CCCEEEEcCCC
Q 021995          187 TRGMFDKDRIAKMK-KGVLIVNNARG  211 (304)
Q Consensus       187 t~~~i~~~~l~~mk-~g~ilVn~~rg  211 (304)
                      ..-.....+++.|+ .+..+|+++..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            11111244566664 35788888754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.77  E-value=0.0046  Score=59.46  Aligned_cols=94  Identities=21%  Similarity=0.353  Sum_probs=67.2

Q ss_pred             cccCCCEEEEEeeC----------hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC--ceecCCHHhhcCcCCEEEEc
Q 021995          113 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       113 ~~L~g~~vgIIG~G----------~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g--~~~~~~l~ell~~aDvVi~~  180 (304)
                      ..+.|++|+|+|+-          .-...+++.|...|++|.+|||.-. .+....++  +...+++++.++.+|.|+++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAM-KEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCH-HHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCc-HHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            45789999999973          3468899999999999999998542 22222333  56677889999999999999


Q ss_pred             CCCChhhhccccHHHH-hcCCCCCEEEEcCCC
Q 021995          181 TPLTEKTRGMFDKDRI-AKMKKGVLIVNNARG  211 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l-~~mk~g~ilVn~~rg  211 (304)
                      +...+ .+ -++-+.+ +.|+ +.+++|+ |+
T Consensus       393 t~~~~-f~-~~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          393 TEWKE-FR-MPDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             SCCGG-GS-SCCHHHHHHHSS-SCEEEES-SC
T ss_pred             cCCHH-Hh-hcCHHHHHHhcC-CCEEEEC-CC
Confidence            87543 22 2344444 4465 5688885 44

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.76  E-value=0.0039  Score=59.45  Aligned_cols=109  Identities=13%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCCC------------CChhHHH----hcC-------ceecCCH
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK------------MDPQLEK----ETG-------AKFEEDL  167 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~~------------~~~~~~~----~~g-------~~~~~~l  167 (304)
                      +.++.|++|.|.|+|++|+.+++.|...|++|+ +.|.+.            ...+...    +.+       .+.. +.
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~  285 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TD  285 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cc
Confidence            346899999999999999999999999999988 445541            1111111    111       1222 22


Q ss_pred             Hhhc-CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          168 DTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       168 ~ell-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++++ ..||+++-|.+     .+.|+.+....+ ...+++-.+.+++-  .+-.+.|.++.+.
T Consensus       286 ~~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t--~ea~~il~~~GI~  340 (421)
T 2yfq_A          286 EEFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT--PEGDKVLTERGIN  340 (421)
T ss_dssp             ---------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC--HHHHHHHHHHTCE
T ss_pred             cchhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC--HHHHHHHHHCCCE
Confidence            3333 36999998875     356778877777 46777777777763  3334555555555

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.76  E-value=0.0026  Score=58.41  Aligned_cols=114  Identities=15%  Similarity=0.097  Sum_probs=67.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhH-HHhc--------CceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~-~~~~--------g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .+|+|||.|.+|..++..+...+.  ++..+|.+..+.+. +.++        ......+..+.+++||+|+++.+....
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            699999999999999998876555  89999986432221 1111        111212446779999999999864321


Q ss_pred             h-----------hcccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          187 T-----------RGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       187 t-----------~~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                      -           ..++.  .+.+....|++++++++..-=+....+.+.  +...++.|.
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence            1           01110  022233478999999865433333334333  333456554

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.75  E-value=0.0014  Score=60.36  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=48.8

Q ss_pred             CCCEEEEEeeChhhH-HHHHHhccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~-~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~---aDvVi~~~p~~  184 (304)
                      .-.+|||||+|.||+ ..++.++.. +++|+ ++|++..      ..|+..+.+++++++.   .|+|++++|..
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~------~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~   92 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT------VEGVNSYTTIEAMLDAEPSIDAVSLCMPPQ   92 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC------CTTSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh------hcCCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence            346899999999998 688888754 78865 6777653      2466677899999865   89999999943

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.75  E-value=0.0035  Score=52.93  Aligned_cols=93  Identities=14%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-CCHH----hhcCcCCEEEEcCCCChhhhc--
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLD----TMLPKCDIVVVNTPLTEKTRG--  189 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~l~----ell~~aDvVi~~~p~~~~t~~--  189 (304)
                      ++|.|.| .|.||+.+++.|...|++|++++|++.+.+... .++... .++.    +.+..+|+|+.+.........  
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchH
Confidence            4799999 599999999999999999999999753322211 222211 1221    678899999988765432211  


Q ss_pred             -cccHHHHhcCCC--CCEEEEcCCC
Q 021995          190 -MFDKDRIAKMKK--GVLIVNNARG  211 (304)
Q Consensus       190 -~i~~~~l~~mk~--g~ilVn~~rg  211 (304)
                       ......++.|++  ...+|+++..
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecc
Confidence             112345555553  3677877764

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.75  E-value=0.0013  Score=60.28  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-------CCHHhh-cCcCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------EDLDTM-LPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~l~el-l~~aDvVi~~~p~~~~t~  188 (304)
                      .+++.|+|+|.+|+.+++.|...|. |++.|+++...+ ..+.+....       +.|+++ ++++|.++++.+..+.  
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~--  190 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE--  190 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH--
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH--
Confidence            5689999999999999999999999 999998775555 445554321       123444 7889999999885433  


Q ss_pred             ccccHHHHhcCCCCCEEEE
Q 021995          189 GMFDKDRIAKMKKGVLIVN  207 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn  207 (304)
                      ++.-....+.+.+...+|-
T Consensus       191 n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          191 TIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             HHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEE
Confidence            3433456666777644443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.74  E-value=0.0018  Score=59.61  Aligned_cols=90  Identities=16%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~e----ll~--~aDvVi~~~p~~  184 (304)
                      .|++|.|+|.|.+|...++.++.. |.+|++.+++..+.+.++++|+...    +++.+    +..  ..|+++-++...
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~  250 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ  250 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence            588999999999999999999987 7899999988777777888886432    12222    222  689999888743


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +.     -...++.++++..++.++-
T Consensus       251 ~~-----~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          251 ST-----IDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECSC
T ss_pred             HH-----HHHHHHHHhcCCEEEEECC
Confidence            22     2466777888888888874

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.71  E-value=0.0053  Score=57.91  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      -.++.|+|.|.+|+.+++.++.+|++|+++|+.+..           . + .+-++.+|-++...|          .+.+
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~-----------~-~-~~~fp~a~~~~~~~p----------~~~~  260 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF-----------A-T-TARFPTADEVVVDWP----------HRYL  260 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT-----------S-C-TTTCSSSSEEEESCH----------HHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh-----------c-c-cccCCCceEEEeCCh----------HHHH
Confidence            358999999999999999999999999999975421           0 1 123456765555544          1222


Q ss_pred             hc------CCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          197 AK------MKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       197 ~~------mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ..      +.++..+|=+.++.-.|...|..+|+++...
T Consensus       261 ~~~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~  299 (386)
T 2we8_A          261 AAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIA  299 (386)
T ss_dssp             HHHHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCS
T ss_pred             HhhccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCC
Confidence            22      6788888889999999999999999887333

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.71  E-value=0.011  Score=55.14  Aligned_cols=180  Identities=11%  Similarity=0.091  Sum_probs=107.0

Q ss_pred             cchhhhccccceeeccccccchhchhHH---HhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHH
Q 021995            2 AMKRVASSAINAFASSGFLRSSSRFSRH---YASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAE   78 (304)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE   78 (304)
                      ||++.-.+.++.-..+.=+.....+...   |...  .-.|..-  +.++   ..-...++..+|+|.|.-|....++  
T Consensus        91 A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR--~~~~---~~~~~la~~s~vPVING~g~~~HPt--  161 (358)
T 4h31_A           91 AAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRM--YDGIQYR--GFGQ---AIVEELGAFAGVPVWNGLTDEFHPT--  161 (358)
T ss_dssp             HHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHH--CSEEEEE--CSCH---HHHHHHHHHSSSCEEESCCSSCCHH--
T ss_pred             HHHHcCCeEEECCcccccccCccchhHHHHHhhcc--CceeEec--ccch---hHHHHhhhhccCceECCCCcCCCch--
Confidence            4556656665544433334444555433   3332  2334432  2221   1112346678899999655443332  


Q ss_pred             HHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHHHhccCCCeEEEEcCCC-CChh-
Q 021995           79 DELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-MDPQ-  154 (304)
Q Consensus        79 ~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~~l~~~G~~V~~~dr~~-~~~~-  154 (304)
                      .+|+=++.+.++.                   .+..+.|.+|++||=+  ++.++.+..+..+|++|.++.|.. .+.+ 
T Consensus       162 QaL~Dl~Ti~e~~-------------------~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~  222 (358)
T 4h31_A          162 QILADFLTMLEHS-------------------QGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEE  222 (358)
T ss_dssp             HHHHHHHHHHHTT-------------------TTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHH
T ss_pred             HHHHHHHHHHHHh-------------------cCCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHH
Confidence            2455555554421                   1236889999999954  799999999999999999998754 2221 


Q ss_pred             -------HHHhcCc--eecCCHHhhcCcCCEEEEcCCCC----hh---------hhccccHHHHhcC-CCCCEEEEcC
Q 021995          155 -------LEKETGA--KFEEDLDTMLPKCDIVVVNTPLT----EK---------TRGMFDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       155 -------~~~~~g~--~~~~~l~ell~~aDvVi~~~p~~----~~---------t~~~i~~~~l~~m-k~g~ilVn~~  209 (304)
                             .+.+.|.  ....++++.++++|+|..-.-..    ++         ...-++.+.++.+ |++++|..+.
T Consensus       223 ~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          223 LVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             HHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             HHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence                   1223343  45679999999999997533211    11         1123677888764 7888888775

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=96.71  E-value=0.0017  Score=59.70  Aligned_cols=66  Identities=24%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEE-EEcCCC-CChhHHH----hcC--ceecCCHHhhcCc--CCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK-MDPQLEK----ETG--AKFEEDLDTMLPK--CDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~~-~~~~~~~----~~g--~~~~~~l~ell~~--aDvVi~~~p~~  184 (304)
                      .+|||||+|.+|+..++.+ .-+++|+ ++|+++ ...+.+.    +++  ...+.++++++++  .|+|++++|..
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   78 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFS   78 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcc
Confidence            4899999999999888777 6678866 678765 3333332    234  3667899999975  89999999843

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.70  E-value=0.0041  Score=58.02  Aligned_cols=67  Identities=19%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             CEEEEEe-eChhhHH-HH----HHhccCC-CeE----------EEEcCCCCChh-HHHhcCc-eecCCHHhhcCc--CCE
Q 021995          118 KTVGTVG-CGRIGKL-LL----QRLKPFN-CNL----------LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLPK--CDI  176 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~-lA----~~l~~~G-~~V----------~~~dr~~~~~~-~~~~~g~-~~~~~l~ell~~--aDv  176 (304)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++|+++...+ .++++|+ ..+.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4899999 9999997 66    5555433 222          48888764433 4456777 466899999865  899


Q ss_pred             EEEcCCCC
Q 021995          177 VVVNTPLT  184 (304)
Q Consensus       177 Vi~~~p~~  184 (304)
                      |++++|..
T Consensus        87 V~i~tp~~   94 (383)
T 3oqb_A           87 FFDAATTQ   94 (383)
T ss_dssp             EEECSCSS
T ss_pred             EEECCCch
Confidence            99999964

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.0024  Score=58.98  Aligned_cols=111  Identities=10%  Similarity=0.128  Sum_probs=71.7

Q ss_pred             CEEEEEeeChhhHHHHHHhcc---------CCCeEE-EEcCCCCChh------HH-Hhc-CceecC--CHHhhcC--cCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP---------FNCNLL-YHDRVKMDPQ------LE-KET-GAKFEE--DLDTMLP--KCD  175 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~---------~G~~V~-~~dr~~~~~~------~~-~~~-g~~~~~--~l~ell~--~aD  175 (304)
                      .+|||||+|.||+.+++.+..         .+.+|. ++|++.....      .. ... ....+.  ++++++.  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            389999999999999998865         467765 5566542111      11 111 122233  8888885  589


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995          176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  229 (304)
Q Consensus       176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~  229 (304)
                      +|+.++|....... .-+.....|+.|.-+|...-+.+. +-+.|.++.++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999996532111 123456778889888877666654 567788877777664

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.69  E-value=0.0011  Score=57.51  Aligned_cols=68  Identities=22%  Similarity=0.235  Sum_probs=47.2

Q ss_pred             CCEEEEEeeChhhHHHHHHh--ccCCCeEE-EEcCCCC-ChhHHHhcCc--eecCCHHhhcCc--CCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKM-DPQLEKETGA--KFEEDLDTMLPK--CDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l--~~~G~~V~-~~dr~~~-~~~~~~~~g~--~~~~~l~ell~~--aDvVi~~~p~~  184 (304)
                      ..+++|+|+|++|+.+++.+  ...|++++ ++|.++. ......-.|+  ...+++++++++  .|.+++|+|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            46899999999999999984  45688865 6687664 3222011233  345678888875  89999999943

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.69  E-value=0.001  Score=60.79  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=66.6

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDvVi~~~p~  183 (304)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++.+.+.++++|....     .++.+    +.  ...|+++.++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            688999999 8999999999999999999999987766667777775321     12222    22  258898888763


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       +    . -...++.++++..+|.++.
T Consensus       220 -~----~-~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          220 -D----T-WLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             -G----G-HHHHHTTEEEEEEEEECCC
T ss_pred             -H----H-HHHHHHHhcCCCEEEEEec
Confidence             1    1 2567888899999998873

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.66  E-value=0.0018  Score=62.22  Aligned_cols=115  Identities=16%  Similarity=0.215  Sum_probs=74.6

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC--C--hhHHHhcCceec--CCHHhhcCc-CCEEEEc--CCC-
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM--D--PQLEKETGAKFE--EDLDTMLPK-CDIVVVN--TPL-  183 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~--~--~~~~~~~g~~~~--~~l~ell~~-aDvVi~~--~p~-  183 (304)
                      ++.|++|.|||.|..|.++|+.|+..|++|.++|....  +  .+..++.|+...  ...++++.+ +|+|++.  +|. 
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            57899999999999999999999999999999998542  1  123345576432  223456666 8999876  332 


Q ss_pred             Chhhh-------ccccH-HHHhcCCCC-CEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          184 TEKTR-------GMFDK-DRIAKMKKG-VLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       184 ~~~t~-------~~i~~-~~l~~mk~g-~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      +|...       .++.+ +++..+.+. .+-|--+.|+.-...-+...|+....
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            22211       12332 344443333 34444456888777777788876553

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.65  E-value=0.0013  Score=60.73  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=60.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhH-H----Hh--c----CceecCCHHhhcCcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-E----KE--T----GAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~-~----~~--~----g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ..++|+|||.|.||..+|..+...|+  +|..+|.+....+. +    ..  +    .+....++++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999987776  89999986432211 1    11  0    1122346655 899999999864


Q ss_pred             CCh---hhh-ccc--cH-------HHHhcCCCCCEEEEcCCC
Q 021995          183 LTE---KTR-GMF--DK-------DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~~---~t~-~~i--~~-------~~l~~mk~g~ilVn~~rg  211 (304)
                      ...   .++ .++  |.       +.+....|++++++++..
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP  140 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL  140 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence            321   011 111  11       123334789999999854

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.65  E-value=0.0015  Score=54.60  Aligned_cols=68  Identities=19%  Similarity=0.147  Sum_probs=48.4

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~~  184 (304)
                      +++|.|.|. |.||+.+++.|...|++|++.+|++.+.......++..       .+++.++++++|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999997 99999999999999999999998753221110112211       124567788999998887643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.64  E-value=0.00084  Score=62.40  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVi~~~p~~  184 (304)
                      .|++|.|+| .|.+|..+++.++..|++|++.+++....+.++++|+...     .++.+.+     ...|+++-++.. 
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-  241 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-  241 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence            588999999 7999999999999999999999987655566667775421     2333322     247999888763 


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +     .-...++.|+++..+|.++..
T Consensus       242 ~-----~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          242 A-----MFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECCCG
T ss_pred             H-----HHHHHHHHHhcCCEEEEEeCC
Confidence            1     125677888888899988753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.63  E-value=0.0012  Score=59.39  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          113 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .++.|+++.|+| .|.+|+.+++.|...|++|++++|+.
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            357899999999 99999999999999999999999964

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.63  E-value=0.0026  Score=56.22  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=49.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~ell~~aDvVi~~~p~~  184 (304)
                      .++|.|.|.|.||+.+++.|...|++|++.+|+..........+++..    .+++  +.++|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            479999999999999999999999999999997654443333444321    2333  78899998877643

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.62  E-value=0.0093  Score=55.65  Aligned_cols=90  Identities=14%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCCCC-hhHHHhc----Cc---e-ecCCHHhhcCcCCEEEEcCCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKET----GA---K-FEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~~~-~~~~~~~----g~---~-~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ...+|+|+| +|.+|+.+++.|.... +++.++...... ......+    +.   . ...+ ++.+.++|+|++|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 9999999999997654 577766543211 1111111    11   0 1122 45567899999999854


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ..      .+.....+.|+.+|+.+...
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa~~  115 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSADF  115 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSSTT
T ss_pred             hH------HHHHHHHhCCCEEEECCccc
Confidence            32      33333337789999998643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.62  E-value=0.00075  Score=61.84  Aligned_cols=90  Identities=21%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE-----EDLDTML-----PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~-----~~l~ell-----~~aDvVi~~~p~  183 (304)
                      .|++|.|+|. |.||..+++.++..|++|++.+++....+.+ +++|+...     .++.+.+     ...|+++.+...
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            6889999998 9999999999999999999999876555555 66665321     1222222     247888887762


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                       +     .-...+..|+++..+|.++..
T Consensus       229 -~-----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          229 -E-----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             -H-----HHHHHHTTEEEEEEEEECCCG
T ss_pred             -c-----hHHHHHHHHhhCCEEEEEeec
Confidence             1     125677888999999988743

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.62  E-value=0.00095  Score=61.79  Aligned_cols=89  Identities=21%  Similarity=0.219  Sum_probs=66.6

Q ss_pred             CCCEEEEE-eeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 021995          116 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgII-G~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVi~~~p~~  184 (304)
                      .|++|.|+ |.|.||..+++.++..|++|++.++++.+.+.++++|....     .++.+.+     ...|+++.++...
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            68899999 68999999999999999999999987766666777775421     1232222     2589998887632


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                            .-...+..|+++..++.++.
T Consensus       247 ------~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          247 ------YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             ------GHHHHHHTEEEEEEEEECCC
T ss_pred             ------HHHHHHHHhccCCEEEEEEe
Confidence                  12567788899999998873

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=96.62  E-value=0.024  Score=52.13  Aligned_cols=130  Identities=5%  Similarity=-0.001  Sum_probs=85.1

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEE-----EeeChhhHH
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGT-----VGCGRIGKL  131 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgI-----IG~G~IG~~  131 (304)
                      .++-.+|+|.|.-+....++  .+|+-++.+.+++         |.          ..+. .+|++     +|=+++.++
T Consensus       130 lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g~----------~~l~-l~ia~a~~~~vGD~rva~S  187 (324)
T 1js1_X          130 FIQHSGRPVFSMEAATRHPL--QSFADLITIEEYK---------KT----------ARPK-VVMTWAPHPRPLPQAVPNS  187 (324)
T ss_dssp             HHHHSSSCEEESSCSSCCHH--HHHHHHHHHHHHC---------SS----------SSCE-EEEECCCCSSCCCSHHHHH
T ss_pred             HHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHc---------CC----------CCee-EEEEEEcccccCCcchHHH
Confidence            34566799999655333332  3455555555421         10          1356 79999     999999999


Q ss_pred             HHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCC--h---------hhhccccHHHHhcCC
Q 021995          132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT--E---------KTRGMFDKDRIAKMK  200 (304)
Q Consensus       132 lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~--~---------~t~~~i~~~~l~~mk  200 (304)
                      ++..+..+|++|.+..|...........++....++++.++++|+|....=..  .         .....++.+.++.+|
T Consensus       188 l~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~  267 (324)
T 1js1_X          188 FAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN  267 (324)
T ss_dssp             HHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS
T ss_pred             HHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC
Confidence            99999999999999998653222211135666789999999999998743211  0         012445777777777


Q ss_pred             CCCEEEEcC
Q 021995          201 KGVLIVNNA  209 (304)
Q Consensus       201 ~g~ilVn~~  209 (304)
                       +++|..+.
T Consensus       268 -~ai~MHcL  275 (324)
T 1js1_X          268 -NAYFMHCL  275 (324)
T ss_dssp             -SCEEECCS
T ss_pred             -CcEEECCC
Confidence             77766553

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.62  E-value=0.0017  Score=61.91  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=67.1

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCH------------------------H--
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL------------------------D--  168 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l------------------------~--  168 (304)
                      .|++|.|+|. |.||..+++.++..|++|++.+++..+.+.++++|+..+-+.                        +  
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  299 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV  299 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence            6899999998 999999999999999999988877666667777776422111                        1  


Q ss_pred             -hh-cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          169 -TM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       169 -el-l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       ++ -...|+++-++.. +    . -...+..|+++..+|+++.
T Consensus       300 ~~~~g~g~Dvvid~~G~-~----~-~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          300 VEKAGREPDIVFEHTGR-V----T-FGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHSSCCSEEEECSCH-H----H-HHHHHHHSCTTCEEEESCC
T ss_pred             HHHhCCCceEEEECCCc-h----H-HHHHHHHHhcCCEEEEEec
Confidence             11 1358999988763 1    1 2567788999999999974

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.61  E-value=0.00094  Score=62.84  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec----CCH-Hh----hcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL-DT----MLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~----~~l-~e----ll~--~aDvVi~~~p~  183 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++....+.++++|+..+    .++ .+    +..  ..|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            68899999999999999999999999 89999987766677777776422    121 22    221  58999988864


Q ss_pred             Chh----------hhccccHHHHhcCCCCCEEEEcCCC
Q 021995          184 TEK----------TRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~~~----------t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ...          .... -.+.++.++++..++.++..
T Consensus       265 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          265 EAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             TCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSCC
T ss_pred             ccccccccccccccHHH-HHHHHHHHhcCCEEEEeccc
Confidence            310          0001 25677888999999888743

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.57  E-value=0.0071  Score=55.32  Aligned_cols=98  Identities=24%  Similarity=0.314  Sum_probs=61.6

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHhcC-------cee---cCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETG-------AKF---EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|||. |.+|..++..|...|  .+|..+|++. ....+.++.       +..   ..++++.+++||+|+++....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~   79 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence            47999998 999999999998777  6899999865 222222221       122   136788899999999987432


Q ss_pred             hh---hh-cc------ccHH---HHhcCCCCCEEEEcCCCchhchHH
Q 021995          185 EK---TR-GM------FDKD---RIAKMKKGVLIVNNARGAIMDTQA  218 (304)
Q Consensus       185 ~~---t~-~~------i~~~---~l~~mk~g~ilVn~~rg~~vd~~a  218 (304)
                      ..   ++ .+      +-.+   .+....+++++|+++.  .+|.-.
T Consensus        80 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN--Pv~~~~  124 (314)
T 1mld_A           80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNSTI  124 (314)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC--CcchhH
Confidence            11   10 01      0111   2222358899999854  455443

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.57  E-value=0.0011  Score=61.22  Aligned_cols=89  Identities=22%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             CCCEEEEE-eeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CcCCEEEEcCCCCh
Q 021995          116 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgII-G~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvVi~~~p~~~  185 (304)
                      .|++|.|+ |.|.+|...++.++.+|++|++.+++..+.+.++++|+...    +++.+.+     ...|+++-++....
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            68999999 69999999999999999999999987666667777775422    2222222     24788887765211


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                          . -...++.++++..+|.++
T Consensus       230 ----~-~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          230 ----Y-YDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             ----H-HHHHHHHEEEEEEEEESS
T ss_pred             ----H-HHHHHHHhccCCEEEEEC
Confidence                1 145667778888887775

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.56  E-value=0.0028  Score=58.61  Aligned_cols=91  Identities=19%  Similarity=0.141  Sum_probs=65.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCce---ec------CCHH----hhc--CcCCEEEE
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAK---FE------EDLD----TML--PKCDIVVV  179 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~---~~------~~l~----ell--~~aDvVi~  179 (304)
                      .|++|.|+|.|.+|...++.++.+|++ |++.++++.+.+.+++++..   +.      .++.    ++.  ...|+++-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            588999999999999999999999998 89998877666666665211   10      1121    122  35899999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ++.....     -...++.++++..+|.++-.
T Consensus       259 ~~g~~~~-----~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          259 CTGVESS-----IAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             CSCCHHH-----HHHHHHHSCTTCEEEECCCC
T ss_pred             CCCChHH-----HHHHHHHhcCCCEEEEEccC
Confidence            8863211     15677889999999998743

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.56  E-value=0.001  Score=61.12  Aligned_cols=89  Identities=25%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDvVi~~~p  182 (304)
                      .|++|.|+|. |.+|..+++.++..|++|++.+++....+.++ ++|....      .++.+.+     ...|+++.+..
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            5889999997 99999999999999999999998765555555 4664321      1232222     24788887775


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      . +     .-...++.++++..+|.++-
T Consensus       235 ~-~-----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          235 G-K-----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             H-H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             H-H-----HHHHHHHHHhcCCEEEEEcc
Confidence            2 1     12566777888888888763

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.53  E-value=0.0074  Score=55.07  Aligned_cols=108  Identities=16%  Similarity=0.120  Sum_probs=74.0

Q ss_pred             ccCCCEEEEE-ee-ChhhHHHHHHhccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhh
Q 021995          114 DLEGKTVGTV-GC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTR  188 (304)
Q Consensus       114 ~L~g~~vgII-G~-G~IG~~lA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~  188 (304)
                      -+..++++|| |+ |+.|+.+++.++..|++++ .+++.....+   -.|...+.+++|+.+  ..|++++++|.. ...
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~   85 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVPPP-FAA   85 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCHH-HHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce---ECCeeeechHHHhhhcCCCCEEEEecCHH-HHH
Confidence            3567889999 99 9999999999999999944 5665421111   246777778999988  899999999943 222


Q ss_pred             ccccHHHHhcCCCC-CEEEEcCCCch-hchHHHHHHHHcC-Cce
Q 021995          189 GMFDKDRIAKMKKG-VLIVNNARGAI-MDTQAVVDACSSG-HIA  229 (304)
Q Consensus       189 ~~i~~~~l~~mk~g-~ilVn~~rg~~-vd~~aL~~aL~~g-~i~  229 (304)
                      ..+ ++..+   .| ..+|+.+-|-. -++..+.+..++. .+.
T Consensus        86 ~~~-~e~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           86 AAI-NEAID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HHH-HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HHH-HHHHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            222 23332   23 34567777753 3455788888887 655

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.52  E-value=0.0095  Score=57.40  Aligned_cols=96  Identities=18%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             ccCCCEEEEEeeC----------hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-------------CceecCCHHhh
Q 021995          114 DLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------GAKFEEDLDTM  170 (304)
Q Consensus       114 ~L~g~~vgIIG~G----------~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-------------g~~~~~~l~el  170 (304)
                      .+.|++|+|+|+.          .-...+++.|...|++|.+|||.-...+....+             ++....++.+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            4789999999985          367889999999999999999964222211111             23445678889


Q ss_pred             cCcCCEEEEcCCCChhhhccccHHH-HhcCCCCCEEEEcCCCc
Q 021995          171 LPKCDIVVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNARGA  212 (304)
Q Consensus       171 l~~aDvVi~~~p~~~~t~~~i~~~~-l~~mk~g~ilVn~~rg~  212 (304)
                      ++++|+|++++... +.+. ++-+. ...|+...+++|. |+-
T Consensus       406 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            99999999999864 3332 34444 4567766668876 443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.52  E-value=0.0028  Score=57.99  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhH-HHhc--------CceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~-~~~~--------g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ++|+|||.|.+|..++..+...+  -++..+|.+..+.+. +.++        ......+..+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            48999999999999999887655  579999986422221 1111        111111235679999999998764321


Q ss_pred             -----------hhcccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          187 -----------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       187 -----------t~~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                                 +..++.  .+.+....|++++++++..-=+....+.+.  +...++.|.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  140 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGS  140 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEec
Confidence                       011110  012223378999999865433333333333  333355444

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.51  E-value=0.0013  Score=59.89  Aligned_cols=88  Identities=22%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CC-HHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED-LDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~-l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|+| .|.+|...++.++.+|++|++.++.. ..+.++++|+...     .+ +.+.+...|+++-++...    
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~----  226 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGD----  226 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHH----
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcH----
Confidence            688999997 99999999999999999998887533 3566777776421     23 566677899999888631    


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       .. ...++.++++..+|.++.
T Consensus       227 -~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          227 -VG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             -HH-HHHGGGEEEEEEEEECCS
T ss_pred             -HH-HHHHHhccCCCEEEEeCC
Confidence             12 577889999999999864

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.50  E-value=0.0038  Score=56.56  Aligned_cols=90  Identities=13%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             CEEEEEe-eChhhHHHHHHhc-cCCCeEE-EEcCCCCCh-----hHH---HhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLK-PFNCNLL-YHDRVKMDP-----QLE---KETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~-~~G~~V~-~~dr~~~~~-----~~~---~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .+|+|+| +|+||+.+++.+. .-+++++ ++|+++...     ...   ...|+..+.++++++.++|+|+-+.+  ++
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~   99 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ   99 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence            4899999 9999999999876 4588855 567754211     111   12456667899999999999987765  22


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      .  . .......++.|.-+|-...|-
T Consensus       100 a--~-~~~~~~~l~~Gv~vViGTTG~  122 (288)
T 3ijp_A          100 A--S-VLYANYAAQKSLIHIIGTTGF  122 (288)
T ss_dssp             H--H-HHHHHHHHHHTCEEEECCCCC
T ss_pred             H--H-HHHHHHHHHcCCCEEEECCCC
Confidence            1  1 122223345666677666663

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.48  E-value=0.0066  Score=56.47  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh-hc--CcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-ML--PKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e-ll--~~aDvVi~~~p~~~~  186 (304)
                      .|++|.|+| .|.+|..+++.++..|++|++.++ ....+.++++|+...     .++.+ +.  ...|+++-++.....
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  261 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE  261 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh
Confidence            688999999 799999999999999999988874 455666777776421     12322 22  368999998874311


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +    -...+..++++..+|.++...
T Consensus       262 ~----~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          262 T----WAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             H----HGGGGBCSSSCCEEEESCCSH
T ss_pred             h----hHHHHHhhcCCcEEEEeCCCc
Confidence            1    134567789999999998654

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.46  E-value=0.013  Score=54.26  Aligned_cols=88  Identities=17%  Similarity=0.129  Sum_probs=54.2

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCCCCh-hHHHh---c-C--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKE---T-G--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~-~~~~~---~-g--~~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .+|||+| +|.+|+.+.+.|.... ++++++.+..... .....   + +  -..+.++++ +.++|+|++|+|..... 
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~-   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFA-   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHH-
Confidence            5899999 8999999999997654 5776655432211 11110   1 1  011234444 57899999999965331 


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ... .   ..++.|..+|+.+-.
T Consensus        83 ~~a-~---~~~~aG~~VId~Sa~  101 (345)
T 2ozp_A           83 REF-D---RYSALAPVLVDLSAD  101 (345)
T ss_dssp             HTH-H---HHHTTCSEEEECSST
T ss_pred             HHH-H---HHHHCCCEEEEcCcc
Confidence            111 1   224678899998863

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.45  E-value=0.0026  Score=59.14  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CcCCEEEEcCCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvVi~~~p~~  184 (304)
                      .|++|.|+| .|.+|...++.++. .|.+|++.++++.+.+.++++|+..+    +++.+.+     ...|+|+-++...
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD  250 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence            688999999 99999999999997 59999999987766677777876422    2232222     2578888877522


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +    . -...++.++++..+|.++
T Consensus       251 ~----~-~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          251 K----H-AAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             H----H-HHHHHHHSCTTCEEEECS
T ss_pred             h----h-HHHHHHHhcCCCEEEEEC
Confidence            1    1 146677888888888774

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.45  E-value=0.0016  Score=61.67  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC---CeEEEEcCCCCChhHH-Hhc------Ccee-------cCCHHhhcCc--CCEEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLE-KET------GAKF-------EEDLDTMLPK--CDIVV  178 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G---~~V~~~dr~~~~~~~~-~~~------g~~~-------~~~l~ell~~--aDvVi  178 (304)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+..+.+.. .++      .+..       .+++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999998887   3899999976433222 111      1211       1345667777  89999


Q ss_pred             EcCCC
Q 021995          179 VNTPL  183 (304)
Q Consensus       179 ~~~p~  183 (304)
                      .++|.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            88874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.44  E-value=0.0024  Score=58.66  Aligned_cols=89  Identities=18%  Similarity=0.134  Sum_probs=62.1

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p~  183 (304)
                      .|++|.|+|. |.+|..+++.++.+|++|++.+++....+.++++|....     .++.    ++.  ...|+++.+.. 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            5889999999 999999999999999999999987655555556664321     1121    222  25788877775 


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .+     .-...++.|+++..+|.++.
T Consensus       245 ~~-----~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          245 AL-----YFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             SS-----SHHHHHHHEEEEEEEEESSC
T ss_pred             HH-----HHHHHHHhhccCCEEEEEec
Confidence            21     12456677777778877763

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.44  E-value=0.0039  Score=59.81  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=67.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHH-hc-C----------------------ceecCCHHhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEK-ET-G----------------------AKFEEDLDTML  171 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~-~~-g----------------------~~~~~~l~ell  171 (304)
                      .+|||||+|.||+.+++.+... +++|. ++|++....+.+. +. |                      ...++++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4899999999999999888754 77754 7788764333322 22 3                      34567899999


Q ss_pred             C--cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCc-hhchHHHHHHHHcCCce
Q 021995          172 P--KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIA  229 (304)
Q Consensus       172 ~--~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~-~vd~~aL~~aL~~g~i~  229 (304)
                      +  +.|+|+.++|... . +.  +-.++.|+.|.-++...-+- +..-+.|.++-++..+.
T Consensus       104 ~d~dIDaVviaTp~p~-~-H~--e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIPE-V-GA--ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCHH-H-HH--HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCChH-H-HH--HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  4899999998532 1 11  23445566666666432211 12335566665555444

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.44  E-value=0.0031  Score=58.39  Aligned_cols=66  Identities=21%  Similarity=0.277  Sum_probs=43.7

Q ss_pred             EEEEEeeChhhHHHHHHhcc-CCCeEEEE-cCCCCChh-HHHhc------------------CceecCCHHhhcCcCCEE
Q 021995          119 TVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDPQ-LEKET------------------GAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~-~G~~V~~~-dr~~~~~~-~~~~~------------------g~~~~~~l~ell~~aDvV  177 (304)
                      +|||+|+|.||+.+++.|.. -++++.+. ++++.... .+...                  +.....+.++++.++|+|
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV   82 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV   82 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence            79999999999999999875 47787644 55432111 11111                  111112466777899999


Q ss_pred             EEcCCCC
Q 021995          178 VVNTPLT  184 (304)
Q Consensus       178 i~~~p~~  184 (304)
                      +.|+|..
T Consensus        83 ~~atp~~   89 (337)
T 1cf2_P           83 IDCTPEG   89 (337)
T ss_dssp             EECCSTT
T ss_pred             EECCCch
Confidence            9999865

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.43  E-value=0.0024  Score=59.88  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=67.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecC----C-HHh----hc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE----D-LDT----ML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~----~-l~e----ll--~~aDvVi~~~p~  183 (304)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+....    + +.+    +.  ...|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~  264 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 689999877666777888864321    1 222    22  257999988864


Q ss_pred             Chhh-----hc-----cccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKT-----RG-----MFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t-----~~-----~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ....     .+     -.-.+.++.++++..++.++-
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             cccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            3100     00     012467788888888888763

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.42  E-value=0.0012  Score=60.86  Aligned_cols=90  Identities=19%  Similarity=0.177  Sum_probs=63.7

Q ss_pred             CCCEEEEEeeC-hhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceec-----CC----HHhhc--CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCG-RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE-----ED----LDTML--PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G-~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~-----~~----l~ell--~~aDvVi~~~p  182 (304)
                      .|++|.|+|.| .||..+++.++.. |++|++.++++...+.++++|....     .+    +.++.  ...|+++.+..
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  249 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  249 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence            57899999999 9999999999998 9999999987655555666665321     12    22333  35788887776


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ..+..     ...++.++++..+|.++.
T Consensus       250 ~~~~~-----~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          250 SEKTL-----SVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             CHHHH-----TTGGGGEEEEEEEEECCS
T ss_pred             CHHHH-----HHHHHHHhcCCEEEEECC
Confidence            32121     345667788888888764

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.42  E-value=0.0034  Score=58.65  Aligned_cols=66  Identities=23%  Similarity=0.341  Sum_probs=47.0

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH--HHhcCceec---CCHHhhcCcCCEEEE
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFE---EDLDTMLPKCDIVVV  179 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~--~~~~g~~~~---~~l~ell~~aDvVi~  179 (304)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+++..+..  +...-...+   +.+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            467999999999999999999999999999999986543211  111000011   225567788998865

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.40  E-value=0.004  Score=53.57  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCCCC
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      +.++++.|.| .|.||+.+++.|...|+  +|++.+|++...+.....++.       ..++++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5788999999 69999999999999999  999999876433211111111       1235667888999999887654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.40  E-value=0.0036  Score=57.61  Aligned_cols=88  Identities=18%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             CCEEEEE-eeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCCC
Q 021995          117 GKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgII-G~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVi~~~p~~  184 (304)
                      +++|.|. |.|.+|...++.++.+|++|++.+++..+.+.++++|+...     .++.+.+      ...|+++-++...
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~  244 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGP  244 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCCh
Confidence            3577665 89999999999999999999999988777777788886422     2232222      2699999887632


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       .   .  ...++.++++..+|.++.
T Consensus       245 -~---~--~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          245 -L---A--SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             -H---H--HHHHHHSCTTCEEEECCC
T ss_pred             -h---H--HHHHhhhcCCCEEEEEec
Confidence             1   1  567888999999999973

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.39  E-value=0.008  Score=55.08  Aligned_cols=95  Identities=19%  Similarity=0.196  Sum_probs=60.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC--CChh-HHHh---------cC--ceecCCHHhhcCcCCEEEEc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDPQ-LEKE---------TG--AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~--~~~~-~~~~---------~g--~~~~~~l~ell~~aDvVi~~  180 (304)
                      ..++|+|||.|.+|..+|..+...|+ +|..+|+++  ...+ .+.+         ..  +....+ .+.+++||+|+++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia   85 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT   85 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence            46799999999999999999988888 999999963  1111 0000         01  122233 4678999999998


Q ss_pred             CCC--Chh-hh-ccc--c----HH---HHhcCCCCCEEEEcCCC
Q 021995          181 TPL--TEK-TR-GMF--D----KD---RIAKMKKGVLIVNNARG  211 (304)
Q Consensus       181 ~p~--~~~-t~-~~i--~----~~---~l~~mk~g~ilVn~~rg  211 (304)
                      ...  .+. ++ .++  |    ++   .+....|++++++++..
T Consensus        86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP  129 (315)
T 3tl2_A           86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP  129 (315)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh
Confidence            642  220 11 111  1    12   22334689999999854

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.37  E-value=0.003  Score=57.63  Aligned_cols=86  Identities=14%  Similarity=0.125  Sum_probs=64.0

Q ss_pred             EEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh----c-----CcCCEEEEcCCCChhhh
Q 021995          119 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM----L-----PKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~el----l-----~~aDvVi~~~p~~~~t~  188 (304)
                      +|.|+|. |.+|..+++.++..|++|++.+++..+.+.++++|+...-+..+.    +     ...|+++-++.. +.  
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~-~~--  229 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG-KQ--  229 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT-HH--
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcH-HH--
Confidence            7999998 999999999999999999999988777777778876432122111    1     246888887763 21  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                         -.+.++.++++..++.++-
T Consensus       230 ---~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          230 ---LASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             ---HHHHHTTEEEEEEEEECCC
T ss_pred             ---HHHHHHhhcCCCEEEEEec
Confidence               2567788888888888863

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.36  E-value=0.0047  Score=59.40  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=70.1

Q ss_pred             CCEEEEEeeChh-hHHHHHHhc----cC-CCeEEEEcCCC--CChhH----HH----hcC----ceecCCHHhhcCcCCE
Q 021995          117 GKTVGTVGCGRI-GKLLLQRLK----PF-NCNLLYHDRVK--MDPQL----EK----ETG----AKFEEDLDTMLPKCDI  176 (304)
Q Consensus       117 g~~vgIIG~G~I-G~~lA~~l~----~~-G~~V~~~dr~~--~~~~~----~~----~~g----~~~~~~l~ell~~aDv  176 (304)
                      ..+|+|||.|.. |..++..|.    .+ +.+|..||++.  ...+.    ..    ..+    +....++++.+++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            358999999998 777655443    34 56799999965  32221    11    111    2334678889999999


Q ss_pred             EEEcCCCChh---hh----------------------------cccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          177 VVVNTPLTEK---TR----------------------------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       177 Vi~~~p~~~~---t~----------------------------~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      |+++.|....   ++                            .++.  .+.+....|++++||++..--+-+.++.+..
T Consensus        87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~  166 (450)
T 1s6y_A           87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT  166 (450)
T ss_dssp             EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred             EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999985321   00                            0110  1223344689999999987656556655544


Q ss_pred             HcCCceE
Q 021995          224 SSGHIAG  230 (304)
Q Consensus       224 ~~g~i~g  230 (304)
                      ...++.|
T Consensus       167 p~~rViG  173 (450)
T 1s6y_A          167 KQEKVVG  173 (450)
T ss_dssp             CCCCEEE
T ss_pred             CCCCEEE
Confidence            3334444

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.36  E-value=0.0026  Score=57.27  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .++.|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            47899999999999999999999999999999999754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.35  E-value=0.009  Score=53.99  Aligned_cols=107  Identities=10%  Similarity=0.147  Sum_probs=76.1

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh---------
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE---------  185 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~---------  185 (304)
                      +.|++|.++|........++.|...|++|....-...   .....|....+++.+.++++|+|+...|...         
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~---~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~   81 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQL---DHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF   81 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTS---SCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecccc---ccccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence            6788999999999999999999999999987743211   1112244445567788889999987444321         


Q ss_pred             -hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          186 -KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       186 -~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       .+...++++.++.++++.+++ ++    +|..++.+++.+.++.
T Consensus        82 a~~~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           82 SNEEVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CSSCEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCC
T ss_pred             ccCCccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCE
Confidence             122336788999999988877 33    3778877777777776

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.35  E-value=0.015  Score=56.22  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEeeC----------hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc------------CceecCCHHhhc
Q 021995          114 DLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET------------GAKFEEDLDTML  171 (304)
Q Consensus       114 ~L~g~~vgIIG~G----------~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~------------g~~~~~~l~ell  171 (304)
                      .+.|++|+|+|+-          .-...+++.|...|++|.+|||.. ..+....+            .+....++++.+
T Consensus       325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (478)
T 2y0c_A          325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVA-QEEARRVIALDLADHPSWLERLSFVDDEAQAA  403 (478)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTT-HHHHHHHHHHHTTTCHHHHTTEEECSSHHHHT
T ss_pred             cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCc-cHHHHHhhccccccccccccceeecCCHHHHH
Confidence            5889999999973          356789999999999999999863 12211222            245667889999


Q ss_pred             CcCCEEEEcCCCChhhhccccHHHH-hcCCCCCEEEEc
Q 021995          172 PKCDIVVVNTPLTEKTRGMFDKDRI-AKMKKGVLIVNN  208 (304)
Q Consensus       172 ~~aDvVi~~~p~~~~t~~~i~~~~l-~~mk~g~ilVn~  208 (304)
                      +++|+|++++... +.+ -++-+.+ +.|+ ..+++|+
T Consensus       404 ~~ad~~vi~t~~~-~f~-~~~~~~~~~~~~-~~~i~D~  438 (478)
T 2y0c_A          404 RDADALVIVTEWK-IFK-SPDFVALGRLWK-TPVIFDG  438 (478)
T ss_dssp             TTCSEEEECSCCG-GGG-SCCHHHHHTTCS-SCEEEES
T ss_pred             hCCCEEEEecCCh-Hhh-ccCHHHHHhhcC-CCEEEEC
Confidence            9999999999864 222 3344444 4555 4788887

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.35  E-value=0.0018  Score=59.00  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=62.2

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p~  183 (304)
                      .|++|.|+| .|.||..+++.++..|++|++.+++....+.++++|....     .+..    +..  ...|+++.+.. 
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-
Confidence            588999999 7999999999999999999999987554555555564321     1221    111  24788887775 


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      . .+    -...++.|+++..+|.++.
T Consensus       219 ~-~~----~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          219 R-DT----WERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             G-GG----HHHHHHTEEEEEEEEECCC
T ss_pred             h-HH----HHHHHHHhcCCCEEEEEec
Confidence            2 11    2566777888888888763

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.35  E-value=0.0068  Score=55.73  Aligned_cols=66  Identities=24%  Similarity=0.364  Sum_probs=47.1

Q ss_pred             CCEEEEEe-eChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHhc---C----cee---cCCHHhhcCcCCEEEEcCCC
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKET---G----AKF---EEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvVi~~~p~  183 (304)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+++. .....++   .    +..   ..++++.++++|+|+++.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            35899999 8999999999998777  78999997553 1111111   1    111   22567889999999999753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.34  E-value=0.0032  Score=55.74  Aligned_cols=93  Identities=18%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCC-------------------hhHHH----hc--Cc--eec
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-------------------PQLEK----ET--GA--KFE  164 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~-------------------~~~~~----~~--g~--~~~  164 (304)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|.....                   .+.+.    +.  ++  ...
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            36899999999999999999999999997 57888764311                   11111    11  11  111


Q ss_pred             ------CCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          165 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       165 ------~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                            ++++++++++|+|+.++. +.+++..+++...+.   +.-+|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence                  134567888999988876 556777776655542   33355543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.34  E-value=0.0022  Score=58.40  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             EEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CCH-Hhhc-----CcCCEEEEcCCCChhhh
Q 021995          119 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL-DTML-----PKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDvVi~~~p~~~~t~  188 (304)
                      +|.|+|. |.+|..+++.++..|++|++.+++..+.+.++++|+...   .+. .+.+     ...|+++-++.. +.  
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~-~~--  228 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-RT--  228 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT-TT--
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH-HH--
Confidence            7999998 999999999999999999999988777777777776421   111 1111     246888777753 11  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                         -.+.++.++++..++.++.
T Consensus       229 ---~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          229 ---LATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             ---HHHHHHTEEEEEEEEECSC
T ss_pred             ---HHHHHHhhccCCEEEEEee
Confidence               2466777888888887763

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.33  E-value=0.0013  Score=63.04  Aligned_cols=89  Identities=19%  Similarity=0.162  Sum_probs=66.4

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C-----------------------CHH
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E-----------------------DLD  168 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~-----------------------~l~  168 (304)
                      .|++|.|+|. |.+|...++.++.+|++|++.++++.+.+.++++|+..+   .                       .+.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~  307 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIR  307 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHH
Confidence            6889999998 999999999999999999988877666677778886422   0                       111


Q ss_pred             hhc--CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          169 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       169 ell--~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ++.  ...|+|+-++.. +.     -...+..++++..+|.++-
T Consensus       308 ~~t~g~g~Dvvid~~G~-~~-----~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          308 ELTGGEDIDIVFEHPGR-ET-----FGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHTSCCEEEEEECSCH-HH-----HHHHHHHEEEEEEEEESCC
T ss_pred             HHhCCCCCcEEEEcCCc-hh-----HHHHHHHhhCCcEEEEEec
Confidence            222  368999988763 21     2466778888888888863

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.32  E-value=0.0077  Score=47.47  Aligned_cols=99  Identities=17%  Similarity=0.204  Sum_probs=70.4

Q ss_pred             CEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ++|+|||.    |..|..+.+.|+..|++|+.+++...  +   -.|...+.++.++-. -|++++++|. +.+..++ +
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~--~---i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v-~   76 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKG--E---VLGKTIINERPVIEG-VDTVTLYINP-QNQLSEY-N   76 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCS--E---ETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGH-H
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCC--c---CCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHH-H
Confidence            58999997    67899999999999999999998542  1   235666778888777 9999999994 3334444 3


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +..+ +...+++++.+  .  .++++.+..++..+.
T Consensus        77 e~~~-~g~k~v~~~~G--~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           77 YILS-LKPKRVIFNPG--T--ENEELEEILSENGIE  107 (122)
T ss_dssp             HHHH-HCCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             HHHh-cCCCEEEECCC--C--ChHHHHHHHHHcCCe
Confidence            3332 34345666544  2  467788888887776

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.31  E-value=0.0053  Score=57.11  Aligned_cols=88  Identities=22%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC-CCeEEEEc--CCCCChhHHHhcC-------------cee-cCCHHhhcC-cCCEEE
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHD--RVKMDPQLEKETG-------------AKF-EEDLDTMLP-KCDIVV  178 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~d--r~~~~~~~~~~~g-------------~~~-~~~l~ell~-~aDvVi  178 (304)
                      .+|+|+| +|.+|+.+++.|... +++|.++.  +..........++             ... ..+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            4899999 999999999999765 46777664  2221111111111             111 114556556 899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +|+|..... .. -..   .++.|..+|+.+-
T Consensus        89 ~atp~~~~~-~~-a~~---~~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDLAK-KF-EPE---FAKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHHHH-HH-HHH---HHHTTCEEEECCS
T ss_pred             ECCCchHHH-HH-HHH---HHHCCCEEEECCc
Confidence            999843221 11 112   2356888999874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.30  E-value=0.0082  Score=55.84  Aligned_cols=89  Identities=15%  Similarity=0.024  Sum_probs=64.1

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPL  183 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVi~~~p~  183 (304)
                      -.|++|.|+|. |.+|...++.++.+|++|++.. ++.+.+.++++|+..+     .++.+.+     ...|+++-++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence            47899999999 8999999999999999988775 4566777788886421     2222221     238999888764


Q ss_pred             ChhhhccccHHHHhcC-CCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKM-KKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~m-k~g~ilVn~~  209 (304)
                      ...     -...++.+ +++..+|.++
T Consensus       242 ~~~-----~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          242 VES-----TTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             HHH-----HHHHHHHSCTTCEEEEESS
T ss_pred             hHH-----HHHHHHHhhcCCCEEEEEe
Confidence            221     14556677 6888888886

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.29  E-value=0.0058  Score=55.95  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=66.4

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeE-EEEcCCCCChhHHHhcCceec-----CCHHhh------cCcCCEEEEcCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFE-----EDLDTM------LPKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V-~~~dr~~~~~~~~~~~g~~~~-----~~l~el------l~~aDvVi~~~p  182 (304)
                      ..|++|.|+|.|.+|...++.++.+|+++ ++.++++.+.+.++++|+...     .+..+.      ....|+++-++.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G  238 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAG  238 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccccc
Confidence            36889999999999999999999999874 677887766777888886422     222222      234788887775


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ....     -...++.++++..++.++-
T Consensus       239 ~~~~-----~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          239 VPQT-----VELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             SHHH-----HHHHHHHCCTTCEEEECCC
T ss_pred             ccch-----hhhhhheecCCeEEEEEec
Confidence            3221     1466788999999988874

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.28  E-value=0.0037  Score=56.15  Aligned_cols=91  Identities=20%  Similarity=0.284  Sum_probs=58.3

Q ss_pred             CCEEEEEe-eChhhHHHHHHhc-cCCCeEEE-EcCCCCChh-----HHH--hcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLK-PFNCNLLY-HDRVKMDPQ-----LEK--ETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~-~~G~~V~~-~dr~~~~~~-----~~~--~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      -.+|+|+| +|.||+.+++.+. .-++++++ +|++.....     ...  ..++....++++++.++|+|+-+.+.. .
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~-a   85 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE-G   85 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHH-H
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHH-H
Confidence            35899999 8999999999886 45888665 687642110     000  114555679999999999999887522 1


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +.    ......++.|.-+|-...|-
T Consensus        86 ~~----~~~~~al~~G~~vVigTTG~  107 (272)
T 4f3y_A           86 TL----VHLDAALRHDVKLVIGTTGF  107 (272)
T ss_dssp             HH----HHHHHHHHHTCEEEECCCCC
T ss_pred             HH----HHHHHHHHcCCCEEEECCCC
Confidence            11    12222345566666666663

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.27  E-value=0.0047  Score=56.36  Aligned_cols=90  Identities=20%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             EEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHh-------c--C--ceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------T--G--AKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~-------~--g--~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      +|+|||.|.+|..++..+...|+ +|..+|.+....+. +.+       .  .  +....+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999998876566 69999987543321 111       1  2  2222455 67899999999965432


Q ss_pred             h-----------hhccccHHH---HhcCCCCCEEEEcCC
Q 021995          186 K-----------TRGMFDKDR---IAKMKKGVLIVNNAR  210 (304)
Q Consensus       186 ~-----------t~~~i~~~~---l~~mk~g~ilVn~~r  210 (304)
                      .           +..++ .+.   +....|++++|+++.
T Consensus        80 k~G~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTM-ADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEeCC
Confidence            1           11111 122   222358999999865

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.27  E-value=0.0021  Score=59.19  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=64.0

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CCHHhhc------CcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTML------PKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~l~ell------~~aDvVi~~~p~~~  185 (304)
                      .|++|.|+| .|.+|..+++.++..|++|++. ++....+.++++|+...   .++.+.+      ...|+++-++.. +
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~-~  227 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG-P  227 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT-H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc-H
Confidence            688999999 7999999999999999999988 55555666677776432   1222221      258888887762 2


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      .     -...+..|+++..+|.++-.
T Consensus       228 ~-----~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          228 V-----LDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             H-----HHHHHHHEEEEEEEEESCCC
T ss_pred             H-----HHHHHHHHhcCCeEEEEccc
Confidence            1     24667778888888887643

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.26  E-value=0.0029  Score=55.77  Aligned_cols=94  Identities=16%  Similarity=0.218  Sum_probs=55.8

Q ss_pred             EEEEEee-ChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          119 TVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       119 ~vgIIG~-G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      +|.|.|. |.||+.+++.|...  |++|++.+|++.+.......++..       .++++++++++|+|+.+........
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~   80 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQR   80 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchHH
Confidence            4788886 99999999999988  999999998765433322223321       1345678899999987765321110


Q ss_pred             ccccHHHHhcCCC-C-CEEEEcCCCc
Q 021995          189 GMFDKDRIAKMKK-G-VLIVNNARGA  212 (304)
Q Consensus       189 ~~i~~~~l~~mk~-g-~ilVn~~rg~  212 (304)
                      -......++.+++ + ..||.+|...
T Consensus        81 ~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           81 APQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             -CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            0111223333321 2 4677777644

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.25  E-value=0.0051  Score=55.46  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=49.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------cCce--------ecCCHHhhcCcCCEE
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------TGAK--------FEEDLDTMLPKCDIV  177 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------~g~~--------~~~~l~ell~~aDvV  177 (304)
                      .+.|++|.|.|. |.||+.+++.|...|++|++.+|+....+....       .++.        ..++++++++++|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            468899999997 999999999999999999999986432211110       1121        123455677789999


Q ss_pred             EEcCCC
Q 021995          178 VVNTPL  183 (304)
Q Consensus       178 i~~~p~  183 (304)
                      +.+...
T Consensus        88 ih~A~~   93 (342)
T 1y1p_A           88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            877643

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.24  E-value=0.0067  Score=56.04  Aligned_cols=89  Identities=17%  Similarity=0.087  Sum_probs=63.5

Q ss_pred             CC-CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC----hhHHHhcCceecC--------CHH----hhc----Cc
Q 021995          116 EG-KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEE--------DLD----TML----PK  173 (304)
Q Consensus       116 ~g-~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~----~~~~~~~g~~~~~--------~l~----ell----~~  173 (304)
                      .| .+|.|+|. |.+|...++.++.+|++|++..++..+    .+.++++|+..+-        ++.    ++.    ..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g  245 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  245 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence            57 89999998 999999999999999998888765544    3455677764321        111    111    35


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .|+++-++... .   .  .+.++.++++..+|.++-
T Consensus       246 ~Dvvid~~G~~-~---~--~~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          246 AKLALNCVGGK-S---S--TGIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             EEEEEESSCHH-H---H--HHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCCch-h---H--HHHHHHhccCCEEEEecC
Confidence            89999888632 1   1  256788999999998873

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.23  E-value=0.0025  Score=58.91  Aligned_cols=89  Identities=12%  Similarity=0.045  Sum_probs=61.7

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p~  183 (304)
                      .|++|.|+| .|.+|..+++.++..|++|++.+++....+.++++|....     .+..    +..  ...|+++.+...
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG  241 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence            588999999 7999999999999999999999987655555556664321     1111    122  247888777753


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .     . -...++.|+++..+|.++.
T Consensus       242 ~-----~-~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          242 S-----Y-WEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             G-----G-HHHHHHHEEEEEEEEECCC
T ss_pred             h-----H-HHHHHHhccCCCEEEEEec
Confidence            1     1 2455677788888887763

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.21  E-value=0.0025  Score=57.94  Aligned_cols=87  Identities=15%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHh------hc-CcCCEEEEcCCCChhhh
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT------ML-PKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~e------ll-~~aDvVi~~~p~~~~t~  188 (304)
                      |+ |.|+|. |.+|...++.++.+|++|++.++++.+.+.++++|+...-+..+      +. ...|+++-++.. +   
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~-~---  222 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD-K---  222 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCH-H---
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCc-H---
Confidence            45 999998 99999999999999999999998887778888888643212111      11 246888777652 1   


Q ss_pred             ccccHHHHhcCCCCCEEEEcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                        .-...++.++++..+|.++.
T Consensus       223 --~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          223 --VLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             --HHHHHHHTEEEEEEEEECCC
T ss_pred             --HHHHHHHHHhcCCEEEEEec
Confidence              22567788899999998874

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.21  E-value=0.012  Score=56.94  Aligned_cols=92  Identities=14%  Similarity=0.248  Sum_probs=66.3

Q ss_pred             cccCCCEEEEEeeC----------hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          113 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       113 ~~L~g~~vgIIG~G----------~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ..+.|++|+|+|+-          .-...+++.|...|++|.+|||.-..   ..  ......++++.++++|+|++++.
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~---~~--~~~~~~~~~~~~~~ad~vvi~t~  423 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN---YP--GVEISDNLEEVVRNADAIVVLAG  423 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC---BT--TBCEESCHHHHHTTCSEEEECSC
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc---cc--CcceecCHHHHHhcCCEEEEecC
Confidence            36789999999973          33688999999999999999986531   11  12345689999999999999987


Q ss_pred             CChhhhccccHH-HHhcCC-CCCEEEEcCCCc
Q 021995          183 LTEKTRGMFDKD-RIAKMK-KGVLIVNNARGA  212 (304)
Q Consensus       183 ~~~~t~~~i~~~-~l~~mk-~g~ilVn~~rg~  212 (304)
                      .. +.+. ++-+ ..+.|+ +..+++|+ |+-
T Consensus       424 ~~-~f~~-~d~~~~~~~~~~~~~~i~D~-rn~  452 (478)
T 3g79_A          424 HS-AYSS-LKADWAKKVSAKANPVIIDG-RNV  452 (478)
T ss_dssp             CH-HHHS-CCHHHHHHHHCCSSCEEEES-SSC
T ss_pred             CH-HHHh-hhHHHHHHHhccCCCEEEEC-CCC
Confidence            54 2222 3444 445677 47889995 553

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.21  E-value=0.0051  Score=55.38  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEeeC---hhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          112 AYDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G---~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      ...+.||++.|.|.+   .||+.+|+.|...|++|++.+|+..
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            346899999999985   8999999999999999999998753

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.20  E-value=0.0087  Score=55.88  Aligned_cols=86  Identities=13%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  197 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~  197 (304)
                      .++.|+|.|.+|+.+++.++.+|++|+++|+.+.   .+         + .+-++.+|-++...|          .+.+.
T Consensus       200 ~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~---~~---------~-~~~fp~a~~v~~~~p----------~~~~~  256 (362)
T 3on5_A          200 ERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPN---QC---------E-KHFFPDADEIIVDFP----------ADFLR  256 (362)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGG---GG---------C-GGGCTTCSEEEESCH----------HHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcc---cc---------c-cccCCCceEEecCCH----------HHHHh
Confidence            4799999999999999999999999999997531   11         1 123456676655444          23344


Q ss_pred             c--CCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995          198 K--MKKGVLIVNNARGAIMDTQAVVDACSSG  226 (304)
Q Consensus       198 ~--mk~g~ilVn~~rg~~vd~~aL~~aL~~g  226 (304)
                      .  +.+++.+|=+.++.-.|...|.++|++.
T Consensus       257 ~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~~  287 (362)
T 3on5_A          257 KFLIRPDDFVLIMTHHFQKDQEILHFLLEKE  287 (362)
T ss_dssp             HSCCCTTCEEEECCSCHHHHHHHHHHHSSSC
T ss_pred             hcCCCCCeEEEEEeCCchhhHHHHHHHhcCC
Confidence            4  5678888889999999999988888773

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.19  E-value=0.033  Score=53.38  Aligned_cols=110  Identities=16%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEE-Ec-------CCCC-Chh---HHH---------------hcCceec
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HD-------RVKM-DPQ---LEK---------------ETGAKFE  164 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~-~d-------r~~~-~~~---~~~---------------~~g~~~~  164 (304)
                      +.++.|++|.|.|+|++|+.++++|...|.+|++ .|       +... ..+   ...               +++.+..
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i  304 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  304 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe
Confidence            4578999999999999999999999999999875 44       3222 111   000               0122222


Q ss_pred             CCHHh-hcCcCCEEEEcCCCChhhhccccHHHHhcCC-CCCEEE-EcCCCchhchHHHHHHHHcC-Cce
Q 021995          165 EDLDT-MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGVLIV-NNARGAIMDTQAVVDACSSG-HIA  229 (304)
Q Consensus       165 ~~l~e-ll~~aDvVi~~~p~~~~t~~~i~~~~l~~mk-~g~ilV-n~~rg~~vd~~aL~~aL~~g-~i~  229 (304)
                      + .++ +-..||+++-|..     .+.|+.+..+.++ +|+.+| -.+.+++ ..++- +.|.+. .+.
T Consensus       305 ~-~~e~~~~~~Dil~P~A~-----~~~I~~~na~~l~a~g~kiV~EgAN~p~-T~eA~-~~l~~~~Gi~  365 (449)
T 1bgv_A          305 P-GEKPWGQKVDIIMPCAT-----QNDVDLEQAKKIVANNVKYYIEVANMPT-TNEAL-RFLMQQPNMV  365 (449)
T ss_dssp             E-TCCGGGSCCSEEECCSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHHH-HHHHHCTTCE
T ss_pred             C-chhhhcCCcceeecccc-----ccccchhhHHHHHhcCCeEEEeCCCCcC-CHHHH-HHHHHcCCEE
Confidence            1 112 2336888876653     3456666666665 344444 4444553 44443 556665 554

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.19  E-value=0.0042  Score=57.67  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhH----HHh-----cCceecCCHHhhcCcCCEEEEcCC
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL----EKE-----TGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~----~~~-----~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      +.+++|+|||. |.+|..+|..+..+|  .+|..+|....+.+.    ...     ..+....++.+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            46789999998 999999998887777  479999985422111    111     122334578888999999999863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.18  E-value=0.0033  Score=60.64  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=49.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec-------CCHHhh-cCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE-------EDLDTM-LPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~-------~~l~el-l~~aDvVi~~~p~~  184 (304)
                      .++|-|+|+|.+|+.+|+.|...|++|++.|.++...+... ++++...       +.|+++ +++||+++.+++..
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            46899999999999999999999999999998764443332 3444221       123333 68899988777654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.18  E-value=0.0031  Score=57.61  Aligned_cols=88  Identities=9%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p~  183 (304)
                      .|++|.|+|. |.||..+++.++..|++|++.+++....+.++++|....     .+..    +..  ...|+++.+...
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~  224 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK  224 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence            5789999995 999999999999999999999987544455555554311     1111    111  246777777653


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                       +     .-...++.|+++..+|.++
T Consensus       225 -~-----~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          225 -D-----TLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             -T-----THHHHHHTEEEEEEEEECC
T ss_pred             -H-----HHHHHHHhhccCCEEEEEe
Confidence             1     1245667777777777775

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.17  E-value=0.0081  Score=55.73  Aligned_cols=87  Identities=17%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEEEE-cCCCCChh-H--------------------HHhcCceecCCHHhhcCcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQ-L--------------------EKETGAKFEEDLDTMLPKC  174 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~-dr~~~~~~-~--------------------~~~~g~~~~~~l~ell~~a  174 (304)
                      .+|||+|+|.||+.+++.|... +++|+++ |+++.... .                    ....+.....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3899999999999999998654 6887655 33211111 0                    1111111112345566789


Q ss_pred             CEEEEcCCCChhhhccccHHH-HhcCCCCCEEEEcC
Q 021995          175 DIVVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNA  209 (304)
Q Consensus       175 DvVi~~~p~~~~t~~~i~~~~-l~~mk~g~ilVn~~  209 (304)
                      |+|+.|+|.....     +.. -..++.|+.+|..+
T Consensus        83 DiV~eatg~~~s~-----~~a~~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGK-----QNLENIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHH-----HHHHHTTTTTTCEEEECT
T ss_pred             CEEEECCCccccH-----HHHHHHHHHCCCEEEECC
Confidence            9999999854321     111 24567777766544

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.14  E-value=0.017  Score=55.22  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             ccCCCEEEEEeeC----------hhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          114 DLEGKTVGTVGCG----------RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       114 ~L~g~~vgIIG~G----------~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+.|++|+|+|+-          .-...+++.|... |++|.+|||.-...        ....++++.++++|+|++++.
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~  383 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSD  383 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSC
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecC
Confidence            3689999999973          3468899999998 99999999865321        234678899999999999987


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEc
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      ..+ .+ -++-+.++.|+ +.+++|.
T Consensus       384 ~~~-f~-~~d~~~~~~~~-~~~i~D~  406 (431)
T 3ojo_A          384 HSE-FK-NLSDSHFDKMK-HKVIFDT  406 (431)
T ss_dssp             CGG-GT-SCCGGGGTTCS-SCEEEES
T ss_pred             CHH-Hh-ccCHHHHHhCC-CCEEEEC
Confidence            543 22 23444456676 6788886

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.12  E-value=0.011  Score=54.44  Aligned_cols=98  Identities=12%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhH-HHhc--C--------ceecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--G--------AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~-~~~~--g--------~~~~~~l~ell~~aDvVi~~  180 (304)
                      ....++|+|||.|.||..+|..+...|.  ++..+|.+....+. +.++  .        +....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999998876666  89999986422111 1111  1        11234554 58999999998


Q ss_pred             CCCC--h-hhh-ccc--cH-------HHHhcCCCCCEEEEcCCCc
Q 021995          181 TPLT--E-KTR-GMF--DK-------DRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       181 ~p~~--~-~t~-~~i--~~-------~~l~~mk~g~ilVn~~rg~  212 (304)
                      ....  + .++ .++  |.       +.+....|++++++++..-
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPv  139 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPV  139 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH
Confidence            6422  1 111 111  11       1233347899999998543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.0025  Score=59.00  Aligned_cols=88  Identities=14%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell~--~aDvVi~~~p~  183 (304)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.++++|....     .++.    +...  ..|+++.+...
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~  249 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  249 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence            5889999998 999999999999999999999987655555556654321     1111    1111  46777766542


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                       +    .+ ...++.++++..+|.++
T Consensus       250 -~----~~-~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          250 -V----NL-SKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             -H----HH-HHHHHHEEEEEEEEECC
T ss_pred             -H----HH-HHHHHhccCCCEEEEEe
Confidence             1    11 34566677777777775

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.09  E-value=0.012  Score=54.36  Aligned_cols=88  Identities=13%  Similarity=0.182  Sum_probs=61.5

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC----hhHHHhcCceecC--------CHHhhcC---cCCEEEE
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEE--------DLDTMLP---KCDIVVV  179 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~----~~~~~~~g~~~~~--------~l~ell~---~aDvVi~  179 (304)
                      .|++|.|+|. |.+|...++.++.+|++|++...+...    .+.++++|+..+-        .+.++..   ..|+++-
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence            5889999998 999999999999999987766543322    3456677764321        2223332   3799988


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ++.. +.+     .+.++.++++..+|.++
T Consensus       247 ~~g~-~~~-----~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          247 CVGG-KSS-----TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSCH-HHH-----HHHHTTSCTTCEEEECC
T ss_pred             CCCc-HHH-----HHHHHhhCCCCEEEEEe
Confidence            8762 222     35678899999998885

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.09  E-value=0.0038  Score=55.28  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH---hcCceecCCHHhhcCc-CCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFEEDLDTMLPK-CDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~---~~g~~~~~~l~ell~~-aDvVi~~~p  182 (304)
                      .+++|.|.|.|.||+.+++.|...|++|++.+|+........   .......++++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            467899999999999999999999999999998754321000   0011112334556666 999987653

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.09  E-value=0.005  Score=55.90  Aligned_cols=104  Identities=14%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .++.|+|. |++|+.+++.+...|++ |..+++.....+   -.|+..+.+++++..  ..|++++++|.. .+...+ +
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v-~   88 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQN---VHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV-F   88 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH-H
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH-H
Confidence            35788898 99999999999988998 335555321111   247777789999988  899999999843 222222 2


Q ss_pred             HHHhcCCCCCE-EEEcCCCc-hhchHHHHHHHHcCCce
Q 021995          194 DRIAKMKKGVL-IVNNARGA-IMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~i-lVn~~rg~-~vd~~aL~~aL~~g~i~  229 (304)
                      +..+   .|.- +|..+.|- .-+++.|.++.++..+.
T Consensus        89 ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           89 EAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             HHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            3332   3332 55555553 34567888888876664

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.08  E-value=0.006  Score=58.55  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             CEEEEEeeChhhHHHHHHhcc----------CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP----------FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~----------~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      .+|||||+|.||+.+++.+..          .+.+|. ++|++....... ..+...+.++++++.  +.|+|+.++|..
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            489999999999999877642          466655 566654222211 124455678999986  478999999853


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  229 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~  229 (304)
                      ..-.    .-..+.|+.|.-+|..--+... ..+.|.++.++.+..
T Consensus        90 ~~h~----~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPAR----ELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHH----HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHH----HHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            2111    2234556777777754332222 335677777766555

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.08  E-value=0.014  Score=51.88  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=46.0

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCCh---hHH------HhcCcee-------cCCHHhhcCcCCEEEE
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP---QLE------KETGAKF-------EEDLDTMLPKCDIVVV  179 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~---~~~------~~~g~~~-------~~~l~ell~~aDvVi~  179 (304)
                      .++|.|.|. |.+|+.+++.|...|++|++.+|+....   +..      ...+++.       .+++.++++++|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            468999996 9999999999999999999999875321   111      1223321       1234566777888877


Q ss_pred             cCC
Q 021995          180 NTP  182 (304)
Q Consensus       180 ~~p  182 (304)
                      +.+
T Consensus        84 ~a~   86 (308)
T 1qyc_A           84 TVG   86 (308)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            765

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.08  E-value=0.0063  Score=56.14  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--------CCeEE-EEcCCCCChhH-------HH---hcCce-ecC---CHHhhc-Cc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--------NCNLL-YHDRVKMDPQL-------EK---ETGAK-FEE---DLDTML-PK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--------G~~V~-~~dr~~~~~~~-------~~---~~g~~-~~~---~l~ell-~~  173 (304)
                      .+|||||+|.||+.+++.+...        +++|. ++|++......       ..   ..++. .++   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            4899999999999999888643        35654 66776522111       11   11221 233   788877 45


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch-hchHHHHHHHHcCCce
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  229 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~aL~~g~i~  229 (304)
                      .|+|+.|+|.. .+...--+...+.|+.|.-+|...-..+ .+.+.|.++.++....
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999964 1111111334556777887876544444 3345677666555543

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.08  E-value=0.0033  Score=56.49  Aligned_cols=65  Identities=23%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             CEEEEEee-ChhhHHHHHHhc-cCCCeEE-EEcCCCCCh---hHH-----HhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLK-PFNCNLL-YHDRVKMDP---QLE-----KETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~-~~G~~V~-~~dr~~~~~---~~~-----~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+|+|+|+ |.||+.+++.+. .-|++++ ++|+++...   +..     ...++...+++++++.++|+|+-+++
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~   81 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR   81 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC
Confidence            48999998 999999999765 5688866 778754221   100     11233445678888889999995543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.06  E-value=0.0054  Score=59.05  Aligned_cols=90  Identities=14%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH---hcCceec-CC-HHhhcCcCCEEEEcCCCChhh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFE-ED-LDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~---~~g~~~~-~~-l~ell~~aDvVi~~~p~~~~t  187 (304)
                      .++.|++|.|||.|.+|...++.|...|++|+++++... .+...   +.++... .. -++.+.++|+|+.+ |..+..
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~-~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a-t~~~~~   85 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI-PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA-TDDDTV   85 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC-HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC-CSCHHH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCC-HHHHHHHhcCCEEEEECCCCccccCCccEEEEc-CCCHHH
Confidence            468999999999999999999999999999999998542 22111   1123211 11 12456688888765 444432


Q ss_pred             hccccHHHHhcCCCCCEEEEc
Q 021995          188 RGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~  208 (304)
                          |.......+.-.+.||+
T Consensus        86 ----n~~i~~~a~~~~i~vn~  102 (457)
T 1pjq_A           86 ----NQRVSDAAESRRIFCNV  102 (457)
T ss_dssp             ----HHHHHHHHHHTTCEEEE
T ss_pred             ----HHHHHHHHHHcCCEEEE
Confidence                23333334444455555

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.04  E-value=0.0034  Score=58.16  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceec----CCH----HhhcC--cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----EDL----DTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~----~~l----~ell~--~aDvVi~~~p~~  184 (304)
                      .|++|.|+|.|.+|...++.++.+ |++|++.++++.+.+.++++|+..+    +++    .++..  ..|+++-++...
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~  265 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  265 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCc
Confidence            578999999999999999999998 9999999987666677777776421    111    12221  478888877643


Q ss_pred             h--hhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 E--KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~--~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +  ..     ...++.  ++..+|.++
T Consensus       266 ~~~~~-----~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          266 ATVDY-----TPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             HHHHH-----GGGGEE--EEEEEEECC
T ss_pred             hHHHH-----HHHhhc--CCCEEEEEe
Confidence            2  22     122333  566677665

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=96.03  E-value=0.029  Score=53.31  Aligned_cols=67  Identities=16%  Similarity=0.303  Sum_probs=52.3

Q ss_pred             cCCCEEEEEe-----eCh---hhHHHHHHhccCCCeEEEEcCCCC--ChhHH-------HhcCc--eecCCHHhhcCcCC
Q 021995          115 LEGKTVGTVG-----CGR---IGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETGA--KFEEDLDTMLPKCD  175 (304)
Q Consensus       115 L~g~~vgIIG-----~G~---IG~~lA~~l~~~G~~V~~~dr~~~--~~~~~-------~~~g~--~~~~~l~ell~~aD  175 (304)
                      |.|++|+|+|     +|.   +.++++..+..+|++|.+..|...  .++..       ++.|.  ....++++.++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            8899999997     354   999999999999999999998643  23221       23453  55679999999999


Q ss_pred             EEEEcC
Q 021995          176 IVVVNT  181 (304)
Q Consensus       176 vVi~~~  181 (304)
                      +|...+
T Consensus       266 VVytd~  271 (418)
T 2yfk_A          266 VVYPKS  271 (418)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            998864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.02  E-value=0.0042  Score=52.82  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----Ccee-cCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKF-EEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~-~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|.|.| .|.||+.+++.|...|++|++.+|+..+.+.....     .+.. .+++.++++++|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            4789999 79999999999999999999999975322111100     1111 224567888999999887654

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.01  E-value=0.011  Score=57.02  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=27.3

Q ss_pred             CEEEEEeeChhhHHHHHHhcc-CCC---eEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP-FNC---NLLYHDRVKM  151 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~-~G~---~V~~~dr~~~  151 (304)
                      ++|.|||+|.||+.+++.+.. .++   +|++.|+...
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~   51 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT   51 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence            469999999999999998864 455   6888887543

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.97  E-value=0.0095  Score=54.35  Aligned_cols=68  Identities=22%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC-hhHH------HhcCcee-------cCCHHhhcC--cCCEE
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLE------KETGAKF-------EEDLDTMLP--KCDIV  177 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~------~~~g~~~-------~~~l~ell~--~aDvV  177 (304)
                      +..++|.|.|. |.+|+.+++.|...|++|++.+|+... .+..      ...++..       .+++.++++  ++|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            44679999997 999999999999899999999997522 1111      1123221       123455666  77777


Q ss_pred             EEcCC
Q 021995          178 VVNTP  182 (304)
Q Consensus       178 i~~~p  182 (304)
                      +.+..
T Consensus        88 i~~a~   92 (346)
T 3i6i_A           88 VSTVG   92 (346)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            76665

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.95  E-value=0.025  Score=54.74  Aligned_cols=102  Identities=17%  Similarity=0.106  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChh---HHHh-c-------CceecCCHHhhcC
Q 021995          114 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ---LEKE-T-------GAKFEEDLDTMLP  172 (304)
Q Consensus       114 ~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~---~~~~-~-------g~~~~~~l~ell~  172 (304)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+|||.-...+   .... +       .+...+++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            478999999997          45678899999999999999999643211   1111 1       1344467888999


Q ss_pred             cCCEEEEcCCCChhhhccccHH-HHhcCCCCCEEEEcCCCchhchHHH
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKD-RIAKMKKGVLIVNNARGAIMDTQAV  219 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~-~l~~mk~g~ilVn~~rg~~vd~~aL  219 (304)
                      ++|+|++++... +.+ -++-+ ..+.|+...+++|. |+- +|.+.+
T Consensus       412 ~ad~~vi~t~~~-~f~-~~~~~~~~~~~~~~~~i~D~-r~~-~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFV-ELNYSQIHNDMQHPAAIFDG-RLI-LDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCG-GGT-TSCHHHHHHHSCSSCEEEES-SSC-SCHHHH
T ss_pred             CCCEEEEcCCcH-Hhh-ccCHHHHHHhcCCCCEEEEC-CCC-CCHHHH
Confidence            999999999864 222 23444 44567776688886 543 454433

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.94  E-value=0.0051  Score=56.81  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHhc-Ccee-----c---CCHHhhcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET-GAKF-----E---EDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~~-g~~~-----~---~~l~ell~~aDvVi~~~p~  183 (304)
                      .+++|.|.| .|.+|+.+++.|...|++|++.+|+....  ...... ++..     .   +++.++++++|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            467899999 59999999999988899999999876543  111111 2211     1   1356778999999876653


Q ss_pred             ChhhhccccHHHHhcCCC-C--CEEEEcCCCc
Q 021995          184 TEKTRGMFDKDRIAKMKK-G--VLIVNNARGA  212 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~-g--~ilVn~~rg~  212 (304)
                      ............++.+++ |  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111222444444432 3  4788888754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.94  E-value=0.012  Score=52.25  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=46.8

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC-CC--h-hHH------HhcCcee-------cCCHHhhcCcCCEEE
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK-MD--P-QLE------KETGAKF-------EEDLDTMLPKCDIVV  178 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~-~~--~-~~~------~~~g~~~-------~~~l~ell~~aDvVi  178 (304)
                      +++|.|.|. |.+|+.+++.|...|++|++.+|+. ..  + +..      ...+++.       .+++.++++++|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999996 9999999999998899999999865 11  1 111      1223321       124556788889888


Q ss_pred             EcCCC
Q 021995          179 VNTPL  183 (304)
Q Consensus       179 ~~~p~  183 (304)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            77664

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.91  E-value=0.014  Score=51.38  Aligned_cols=39  Identities=23%  Similarity=0.288  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEeeC---hhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          113 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       113 ~~L~g~~vgIIG~G---~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      .+|+||++.|-|.+   .||+++|+.|...|++|++.+|+..
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36899999999974   6999999999999999999998653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.89  E-value=0.011  Score=54.69  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995           73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV  149 (304)
Q Consensus        73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~  149 (304)
                      ....||.++-+=|-+.|-          .-|...    ....|.+++|.|||+|.+|..+++.|...|.. ++++|+.
T Consensus         4 p~~~~~~~~~lnl~lm~w----------Rll~~~----g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A            4 PLKIADQSVDLNLKLMKW----------RILPDL----NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------HTCTTC----CHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHH----------hhcchh----hHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            456788887777777651          011111    12368999999999999999999999999974 7888864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.87  E-value=0.02  Score=51.40  Aligned_cols=65  Identities=20%  Similarity=0.275  Sum_probs=47.4

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCC-ChhHH---HhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLE---KETGAKF-------EEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~~~---~~~g~~~-------~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|.|.|. |.+|+.+++.|...|++|.+.+|+.. .....   ...+++.       .+++.++++++|+|+.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            58999995 99999999999989999999998764 22211   1234332       1345677888999987765

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.83  E-value=0.0062  Score=55.19  Aligned_cols=72  Identities=17%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             ccccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHh-cCce-------ecCCHHhhcC--cCCEEEE
Q 021995          112 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKE-TGAK-------FEEDLDTMLP--KCDIVVV  179 (304)
Q Consensus       112 ~~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~-~g~~-------~~~~l~ell~--~aDvVi~  179 (304)
                      ...+.|++|.|.|. |.||+.+++.|...|++|++.+|+..... .... .++.       ..++++++++  .+|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            45789999999996 99999999999999999999998643221 0011 1111       1123456677  8899987


Q ss_pred             cCCC
Q 021995          180 NTPL  183 (304)
Q Consensus       180 ~~p~  183 (304)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7653

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.83  E-value=0.033  Score=51.75  Aligned_cols=93  Identities=22%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccC-CCeEEEEcC-CCCChhHH-------HhcCceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDR-VKMDPQLE-------KETGAKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~dr-~~~~~~~~-------~~~g~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      .-.+||||| .|.+|+.+.+.|... ..++..+.. +.......       .+.-++.. +.++++.++|++++|+|...
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~-~~~~~~~~~Dvvf~alp~~~   90 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEF-DPEKVSKNCDVLFTALPAGA   90 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCC-CHHHHHHHCSEEEECCSTTH
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeC-CHHHhhcCCCEEEECCCcHH
Confidence            345899998 699999999999765 346665543 22111111       11111222 45566678999999999543


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcCCCchhch
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  216 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~  216 (304)
                      .      .+..+.+ .|+.+||.|..-=.+.
T Consensus        91 s------~~~~~~~-~g~~VIDlSsdfRl~~  114 (351)
T 1vkn_A           91 S------YDLVREL-KGVKIIDLGADFRFDD  114 (351)
T ss_dssp             H------HHHHTTC-CSCEEEESSSTTTCSS
T ss_pred             H------HHHHHHh-CCCEEEECChhhhCCc
Confidence            3      5666677 8999999996544443

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.81  E-value=0.0045  Score=57.09  Aligned_cols=89  Identities=19%  Similarity=0.206  Sum_probs=61.2

Q ss_pred             CC--CEEEEEee-ChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHh-cCceec-----CCHHhhc----C-cCCEEEEc
Q 021995          116 EG--KTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML----P-KCDIVVVN  180 (304)
Q Consensus       116 ~g--~~vgIIG~-G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~-~g~~~~-----~~l~ell----~-~aDvVi~~  180 (304)
                      .|  ++|.|.|. |.||..+++.++..|+ +|++.+++....+...+ +|....     .++.+.+    . ..|+++.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            46  89999998 9999999999999999 99999986544444444 564321     1222211    1 47888777


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ...  .    .-...++.++++..+|.++.
T Consensus       238 ~G~--~----~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          238 VGG--N----ISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             CCH--H----HHHHHHHTEEEEEEEEECCC
T ss_pred             CCH--H----HHHHHHHHhccCcEEEEECC
Confidence            752  1    12566777888888888764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.80  E-value=0.0061  Score=51.86  Aligned_cols=66  Identities=17%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|.|.| .|.||+.+++.|...|++|++.+|++.+..... .++.       ..++++++++++|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            6899999 599999999999999999999999753221110 1111       1234567889999998887543

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.79  E-value=0.0058  Score=56.45  Aligned_cols=102  Identities=13%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccC---------CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF---------NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~---------G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      .+|||||+|.||+.+++.+...         +++|. ++|++..+.... .. ...++++++++ +.|+|+.|+|.....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~-~~-~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI-PQ-ELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS-CG-GGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc-Cc-ccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            3799999999999999988654         45654 667764322111 01 12356788888 999999999855221


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCch-hchHHHHHHHHcC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSG  226 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~aL~~g  226 (304)
                      .    .-..+.|+.|.-+|...-..+ ...+.|.++.++.
T Consensus        81 ~----~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           81 L----RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             H----HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             H----HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            1    122345566666666433333 2445677666665

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.79  E-value=0.018  Score=53.58  Aligned_cols=30  Identities=30%  Similarity=0.495  Sum_probs=25.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEEEEc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHD  147 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~d  147 (304)
                      .+|||+|+|.||+.+.+.|... .++|++.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            4899999999999999998765 68877665

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.79  E-value=0.018  Score=53.17  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             CEEEEEeeChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHH---h----cC-------------------ce--ecCCHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEK---E----TG-------------------AK--FEEDLD  168 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~---~----~g-------------------~~--~~~~l~  168 (304)
                      .+|||+|+|.||+.+++.+.. -+++|++.+......+...   +    +|                   +.  ...+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            489999999999999998864 4688776543101122110   0    00                   00  112455


Q ss_pred             hhc---CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          169 TML---PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       169 ell---~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      ++-   .++|+|+.|+|.....     +..-+.++.|+..|.++-+
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~-----e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTM-----EKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSH-----HHHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhhH-----HHHHHHHhCCCeEEEeccC
Confidence            552   5799999999854221     2233445667666666543

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.77  E-value=0.0087  Score=52.73  Aligned_cols=96  Identities=13%  Similarity=0.163  Sum_probs=59.2

Q ss_pred             CEEEEEee-ChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCChhh
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      ++|.|.|. |.||+.+++.|...  |++|++.+|++.+.......++..       .+++.++++++|+|+.+.......
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~   80 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN   80 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence            46888986 99999999999988  999999998765443322223321       134567888999998776532110


Q ss_pred             -hccc-cHHHHhcCC-CC-CEEEEcCCCch
Q 021995          188 -RGMF-DKDRIAKMK-KG-VLIVNNARGAI  213 (304)
Q Consensus       188 -~~~i-~~~~l~~mk-~g-~ilVn~~rg~~  213 (304)
                       .++. ....++.++ .+ ..||.+|....
T Consensus        81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~  110 (287)
T 2jl1_A           81 TLLIVQHANVVKAARDAGVKHIAYTGYAFA  110 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEETTG
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence             0110 122333332 23 37888876543

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.70  E-value=0.0097  Score=56.50  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC--ceecC---CHHhhcCcCCEEEE
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKFEE---DLDTMLPKCDIVVV  179 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g--~~~~~---~l~ell~~aDvVi~  179 (304)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|+++|+++..+.......  ...+.   .+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999999998664332211100  11112   24456678898874

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.68  E-value=0.0074  Score=53.41  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=47.9

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|.|.| .|.||+.+++.|... |++|.+.+|++.+.......+++.       .++++++++++|+|+.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4689999 599999999999887 999999998764332222223321       13456789999999887764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.67  E-value=0.017  Score=51.74  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999985 7899999999999999999998865

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.66  E-value=0.025  Score=53.87  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCcCCEEEEcCCC---Chh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPL---TEK  186 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~~g~~~~--~~l~ell~~aDvVi~~~p~---~~~  186 (304)
                      ++.+++|.|||.|..|.+.|+.|...|++|+++|......  .... .|+...  ....+.+..+|.|++.-..   .|.
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS   80 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence            3678999999999999999999999999999999765332  2233 455432  1124455589998886322   232


Q ss_pred             hh-------ccccH-HHH-hcCCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          187 TR-------GMFDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       187 t~-------~~i~~-~~l-~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      ..       .++.+ +.+ ..++...+-|--+.|+.-...-|...|++..
T Consensus        81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g  130 (439)
T 2x5o_A           81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAG  130 (439)
T ss_dssp             HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            21       12322 122 2245446666666788887777777777643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.66  E-value=0.018  Score=51.96  Aligned_cols=65  Identities=15%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|.|.| .|.||+.+++.|...|++|++.+|+....+.....++..       .++++++++++|+|+.+..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            5899999 599999999999999999999998765433222223321       1235577889999987765

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=95.64  E-value=0.012  Score=53.37  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=67.4

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcC--c-CCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--K-CDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~-aDvVi~~~p~~~~t~~~i~  192 (304)
                      .++.|+|. |++|+.+++.+...|++ |..+++.....+   -.|+..+.+++++..  . .|++++++|... +...+ 
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~-~~~~v-   88 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSE---VHGVPVYDSVKEALAEHPEINTSIVFVPAPF-APDAV-   88 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHCTTCCEEEECCCGGG-HHHHH-
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCCEEEEecCHHH-HHHHH-
Confidence            45777798 99999999999888998 345665321111   247777789999886  5 999999998532 22222 


Q ss_pred             HHHHhcCCCCCE-EEEcCCCc-hhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGVL-IVNNARGA-IMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~i-lVn~~rg~-~vd~~aL~~aL~~g~i~  229 (304)
                      ++..+   .|.- +|..+.|- ..+++.|.++.++..+.
T Consensus        89 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           89 YEAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22322   2332 55555553 23566788888876664

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.62  E-value=0.015  Score=51.76  Aligned_cols=66  Identities=17%  Similarity=0.075  Sum_probs=48.7

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCC-CeEEEEcCCCCChh--HHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ--LEKETGAKF-------EEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~--~~~~~g~~~-------~~~l~ell~~aDvVi~~~p  182 (304)
                      .++|.|.|. |.+|+.+++.|...| ++|.+.+|++.+..  .....+++.       .+++.++++++|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999997 999999999998888 99999999765431  112234322       1345678899999988765

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=95.60  E-value=0.23  Score=46.22  Aligned_cols=104  Identities=17%  Similarity=0.174  Sum_probs=70.0

Q ss_pred             HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-------Chhh
Q 021995           57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-------GRIG  129 (304)
Q Consensus        57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-------G~IG  129 (304)
                      .++-..|+|.|. |.+..++  .+|+=++.+.+++                   ...++.|++++++|.       .++.
T Consensus       152 ~a~~~~vPVIN~-g~~~HPt--QaL~Dl~Ti~e~~-------------------G~~dl~g~kv~~~~~~~gd~~~~~Va  209 (359)
T 3kzn_A          152 FAKYSPVPVINM-ETITHPC--QELAHALALQEHF-------------------GTPDLRGKKYVLTWTYHPKPLNTAVA  209 (359)
T ss_dssp             HHHHCSSCEEES-SSSCCHH--HHHHHHHHHHHHH-------------------TSSCCTTCEEEEEECCCSSCCCSHHH
T ss_pred             HHHhCCCcccCc-ccccCch--HHHHHHHHHHHHc-------------------CCccccCCeEEEEEeecCCccccchh
Confidence            456688999995 5544332  2455555554421                   112589999999985       3588


Q ss_pred             HHHHHHhccCCCeEEEEcCCC--CChh-H-------HHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 021995          130 KLLLQRLKPFNCNLLYHDRVK--MDPQ-L-------EKETG--AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       130 ~~lA~~l~~~G~~V~~~dr~~--~~~~-~-------~~~~g--~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ++....+..+|++|.++.+.+  .+.+ .       +.+.|  +....++++.++++|+|....-
T Consensus       210 ~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDvvyt~r~  274 (359)
T 3kzn_A          210 NSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSW  274 (359)
T ss_dssp             HHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTCSEEEEECC
T ss_pred             hhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCCeEEEEEEE
Confidence            899999999999999988742  1111 1       12233  3456799999999999987643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.59  E-value=0.011  Score=52.58  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|+||++.|-|. +.||+++|+.|...|++|++++++.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~   41 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLE   41 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            799999999986 5699999999999999999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.58  E-value=0.016  Score=52.65  Aligned_cols=70  Identities=24%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             ccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHh----------cCcee-------cCCHHhhcCcC
Q 021995          114 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKE----------TGAKF-------EEDLDTMLPKC  174 (304)
Q Consensus       114 ~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~----------~g~~~-------~~~l~ell~~a  174 (304)
                      .+.+++|.|.| .|.||+.+++.|...|++|++.+|+...... ...          .++..       .++++++++++
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            46789999999 5999999999999999999999986543221 111          12211       12356778899


Q ss_pred             CEEEEcCCC
Q 021995          175 DIVVVNTPL  183 (304)
Q Consensus       175 DvVi~~~p~  183 (304)
                      |+|+.+...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999877653

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.57  E-value=0.012  Score=54.92  Aligned_cols=86  Identities=20%  Similarity=0.266  Sum_probs=48.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccC----CCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcCc------------------
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF----NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK------------------  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~----G~~V~-~~dr~~~~~~~~~~~-g~~~~~~l~ell~~------------------  173 (304)
                      .+|||||+|.||+.+++.+...    +++|. ++|++.  .....++ |+..+.++++++..                  
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~   82 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTS   82 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTC
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhc
Confidence            3799999999999999998764    35654 455422  1111122 33333455555433                  


Q ss_pred             --CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          174 --CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       174 --aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                        .|+|+.|+|.....     ....+.|+.|.-+|...-
T Consensus        83 ~~~DvVV~~t~~~~~a-----~~~~~AL~aGkhVVtaNk  116 (358)
T 1ebf_A           83 PKPVILVDNTSSAYIA-----GFYTKFVENGISIATPNK  116 (358)
T ss_dssp             SSCEEEEECSCCHHHH-----TTHHHHHHTTCEEECCCC
T ss_pred             cCCcEEEEcCCChHHH-----HHHHHHHHCCCeEEecCc
Confidence              27888888854321     122344556666655433

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.56  E-value=0.012  Score=53.51  Aligned_cols=72  Identities=13%  Similarity=0.078  Sum_probs=46.1

Q ss_pred             ccccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995          112 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       112 ~~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .....+++|.|.|. |.||+.+++.|...|++|++.+|+...... .....+...++++++++++|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            34688999999997 999999999999999999999987533100 0000111123456788899999877653

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=95.55  E-value=0.062  Score=50.73  Aligned_cols=68  Identities=16%  Similarity=0.318  Sum_probs=52.0

Q ss_pred             ccCCCEEEEEee-----C---hhhHHHHHHhccCCCeEEEEcCCCC--ChhHH-------HhcCc--eecCCHHhhcCcC
Q 021995          114 DLEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETGA--KFEEDLDTMLPKC  174 (304)
Q Consensus       114 ~L~g~~vgIIG~-----G---~IG~~lA~~l~~~G~~V~~~dr~~~--~~~~~-------~~~g~--~~~~~l~ell~~a  174 (304)
                      .|.|++|+|+|.     |   ++.++++..+..+|++|.+..|...  .++..       +..|.  ....++++.++++
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a  267 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA  267 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence            478999999984     4   6889999999999999999988642  22222       23453  4567999999999


Q ss_pred             CEEEEcC
Q 021995          175 DIVVVNT  181 (304)
Q Consensus       175 DvVi~~~  181 (304)
                      |+|..-+
T Consensus       268 DvVytd~  274 (399)
T 3q98_A          268 DIVYPKS  274 (399)
T ss_dssp             SEEEECC
T ss_pred             CEEEecC
Confidence            9998754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.52  E-value=0.0066  Score=52.40  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=43.4

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC----cCCEEEEcCCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP----KCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~----~aDvVi~~~p~  183 (304)
                      |+|.|.|. |.||+.+++.|...|++|++.+|+....+......+...++++++++    ..|+|+.+...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            57889986 99999999999999999999998754321100000001123444443    78999877643

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.51  E-value=0.014  Score=54.05  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=54.4

Q ss_pred             CEEEEEe-eChhhHHHHHHhcc-CCCeEEEE-cCCC--CChh-HH------Hhc-CceecC--CHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKP-FNCNLLYH-DRVK--MDPQ-LE------KET-GAKFEE--DLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~-~G~~V~~~-dr~~--~~~~-~~------~~~-g~~~~~--~l~ell~~aDvVi~~~p  182 (304)
                      .+|+|+| .|.+|+.+.+.|.. -.+++..+ ++++  ...+ ..      ... .....+  +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 69999999999976 45676655 3321  1111 11      110 111111  45555589999999999


Q ss_pred             CChhhhccccHHHHh-cCCCCCEEEEcCCC
Q 021995          183 LTEKTRGMFDKDRIA-KMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~-~mk~g~ilVn~~rg  211 (304)
                      ....      .+..+ .++.|+.+||.|..
T Consensus        85 ~~~s------~~~~~~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEVS------HDLAPQFLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHHH------HHHHHHHHHTTCEEEECSST
T ss_pred             hHHH------HHHHHHHHHCCCEEEEcCCc
Confidence            4322      22222 24679999999854

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.50  E-value=0.025  Score=55.25  Aligned_cols=113  Identities=14%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             cCCCEEEEEeeChhhHH-HHHHhccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCcCCEEEEc--CCC-Chh
Q 021995          115 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVN--TPL-TEK  186 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~-lA~~l~~~G~~V~~~dr~~~~~--~~~~~~g~~~~--~~l~ell~~aDvVi~~--~p~-~~~  186 (304)
                      ..+++|-|||.|.+|.+ +|+.|+..|++|.++|....+.  +..++.|+...  ...+.+..++|+|+..  +|. +|.
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~   96 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV   96 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence            46789999999999996 7899999999999999864332  33455676543  2345555679999875  332 332


Q ss_pred             hhc-------cccH-HHHhc--CCC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          187 TRG-------MFDK-DRIAK--MKK-GVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       187 t~~-------~i~~-~~l~~--mk~-g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      ...       ++.+ +++..  +++ ..+-|--+.|+.-...-+...|+...
T Consensus        97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G  148 (524)
T 3hn7_A           97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG  148 (524)
T ss_dssp             HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            211       2332 34443  333 34566666799888888888888654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.48  E-value=0.019  Score=52.15  Aligned_cols=114  Identities=14%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCC--eEEEEcC--CCCChhH-HHhc--------CceecCCHHhhcCcCCEEEEcCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDR--VKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~--~V~~~dr--~~~~~~~-~~~~--------g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ++|+|+| .|.+|+.++..|...|.  ++..+|+  .....+. ..++        ......+..+.++++|+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999998876564  6888998  4321111 1111        111111225679999999998753


Q ss_pred             Chh---hh-cc------ccH---HHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995          184 TEK---TR-GM------FDK---DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  231 (304)
Q Consensus       184 ~~~---t~-~~------i~~---~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga  231 (304)
                      ...   ++ .+      +-.   +.+....+++++++.+..-=+....+.+.  +...++.|.
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeec
Confidence            221   00 00      111   22233467899999865433333333333  333455554

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.43  E-value=0.018  Score=53.51  Aligned_cols=87  Identities=17%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC-CCeEEEEc--CCCCChhHHHhc-------------Cceec-CCHHhhcCcCCEEEE
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHD--RVKMDPQLEKET-------------GAKFE-EDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~d--r~~~~~~~~~~~-------------g~~~~-~~l~ell~~aDvVi~  179 (304)
                      .+|||+| +|.+|+.+.+.|... .+++.++.  ++.........+             ..... .+.++ +.++|+|++
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            5899999 899999999998764 46776663  221111111111             11111 13344 478999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      |+|..... .+ -.   ..++.|..+|+.+.
T Consensus        84 atp~~~s~-~~-a~---~~~~aG~~VId~s~  109 (350)
T 2ep5_A           84 ALPNELAE-SI-EL---ELVKNGKIVVSNAS  109 (350)
T ss_dssp             CCCHHHHH-HH-HH---HHHHTTCEEEECSS
T ss_pred             CCChHHHH-HH-HH---HHHHCCCEEEECCc
Confidence            99843221 11 11   22356788888874

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.42  E-value=0.025  Score=51.93  Aligned_cols=93  Identities=15%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCC----CCChhH-HH--hcC-------ceecCCHHhhcCcCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRV----KMDPQL-EK--ETG-------AKFEEDLDTMLPKCD  175 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~----~~~~~~-~~--~~g-------~~~~~~l~ell~~aD  175 (304)
                      ++|+|+|. |.+|+.++..|...|+       +|..+|+.    ....+. ..  ...       +....++.+.+++||
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD   85 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD   85 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence            58999997 9999999999987775       79999986    211110 00  111       122367889999999


Q ss_pred             EEEEcCCCChh---hh-cc------ccHH---HHhcC-CCCCEEEEcCC
Q 021995          176 IVVVNTPLTEK---TR-GM------FDKD---RIAKM-KKGVLIVNNAR  210 (304)
Q Consensus       176 vVi~~~p~~~~---t~-~~------i~~~---~l~~m-k~g~ilVn~~r  210 (304)
                      +|+.+......   ++ .+      +-.+   .+... +++++||+++.
T Consensus        86 ~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           86 VALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            99987643211   00 00      0111   22333 47889999984

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.40  E-value=0.018  Score=53.35  Aligned_cols=68  Identities=21%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p  182 (304)
                      ..+++|.|.|. |.||+.+++.|...|++|++.+|+..........++..       .++++++++++|+|+.+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            46789999997 99999999999989999999998754322111112221       1235677889999987764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.39  E-value=0.031  Score=49.36  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             CEEEEEee-ChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      .+|+|+|+ |.||+.+++.+... ++++. ++|+.               +++++++. .+|+|+-+.+.. .+.    .
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~-a~~----~   60 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPD-VVM----G   60 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCTT-THH----H
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccChH-HHH----H
Confidence            37999996 99999999998754 89976 55652               24555553 789988555322 111    1


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHH-HHHHHH
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQA-VVDACS  224 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~a-L~~aL~  224 (304)
                      .....++.|.-+|-...|-..++.+ |.++.+
T Consensus        61 ~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~   92 (245)
T 1p9l_A           61 NLEFLIDNGIHAVVGTTGFTAERFQQVESWLV   92 (245)
T ss_dssp             HHHHHHHTTCEEEECCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHH
Confidence            2222345566566656663333233 344444

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.39  E-value=0.015  Score=53.15  Aligned_cols=90  Identities=20%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhcC--cCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell~--~aDvVi~~~p~  183 (304)
                      .|++|.|+|.|.+|...++.++. .|.+|++.++++.+.+.+++.|...+     .++.    ++..  ..|+++.+...
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~  242 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAVA  242 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCSC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEeccC
Confidence            58899999999999999999984 58899999987766677777775421     2222    2222  34666666543


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .+.     -...++.++++..++.++-
T Consensus       243 ~~~-----~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          243 RIA-----FEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             HHH-----HHHHHHTEEEEEEEEECCC
T ss_pred             cch-----hheeheeecCCceEEEEec
Confidence            222     1456677888888877764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.36  E-value=0.018  Score=51.48  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             CCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhcCcCCEEEEcCCC
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      +++|.|.| .|.||+.+++.|...|++|++.+|++...+ ...     .... .+++.++++++|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 699999999999999999999999743222 111     1112 23567788999999877653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.35  E-value=0.012  Score=52.78  Aligned_cols=67  Identities=24%  Similarity=0.381  Sum_probs=47.4

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC-CC--hhHH------HhcCcee-------cCCHHhhcCcCCEEEE
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK-MD--PQLE------KETGAKF-------EEDLDTMLPKCDIVVV  179 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~-~~--~~~~------~~~g~~~-------~~~l~ell~~aDvVi~  179 (304)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+. ..  .+..      ...+++.       .+++.++++++|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999995 9999999999998999999999875 21  1111      1223321       1345678888999988


Q ss_pred             cCCC
Q 021995          180 NTPL  183 (304)
Q Consensus       180 ~~p~  183 (304)
                      +...
T Consensus        84 ~a~~   87 (321)
T 3c1o_A           84 ALPF   87 (321)
T ss_dssp             CCCG
T ss_pred             CCCc
Confidence            7753

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.33  E-value=0.033  Score=50.93  Aligned_cols=101  Identities=24%  Similarity=0.342  Sum_probs=61.1

Q ss_pred             CEEEEEe-eChhhHHHHHHhcc---CCCeEEEEcCCCCChhHHHhc---Cc--eec----CCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKP---FNCNLLYHDRVKMDPQLEKET---GA--KFE----EDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~---~G~~V~~~dr~~~~~~~~~~~---g~--~~~----~~l~ell~~aDvVi~~~p~~  184 (304)
                      ++|+|+| .|.+|..++..|..   +..++..+|........+.++   ..  ...    .+..+.+++||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            4899999 89999999998853   556899999865211111111   11  111    24567899999999987532


Q ss_pred             hh---hh-ccc--cHH-------HHhcCCCCCEEEEcCCCchhchHHHH
Q 021995          185 EK---TR-GMF--DKD-------RIAKMKKGVLIVNNARGAIMDTQAVV  220 (304)
Q Consensus       185 ~~---t~-~~i--~~~-------~l~~mk~g~ilVn~~rg~~vd~~aL~  220 (304)
                      ..   ++ .++  |..       .+....|++++++++.  .+|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN--Pvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC--cchhHHHH
Confidence            11   11 111  111       2233367899999964  44544443

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.30  E-value=0.013  Score=50.19  Aligned_cols=68  Identities=19%  Similarity=0.150  Sum_probs=48.0

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCCC
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ..+++|.|.| .|.||+.+++.|...  |++|++.+|++.+.+.. ..++.       ..+++++++++.|+|+.+...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            3578999999 699999999999988  89999999864221111 11111       113456788899999887653

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.29  E-value=0.019  Score=57.09  Aligned_cols=74  Identities=14%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             cEEEEcCCC-ChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCC
Q 021995           63 LTVAEVTGS-NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC  141 (304)
Q Consensus        63 I~v~n~~g~-~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~  141 (304)
                      -...+-... .....||.+.-+-|.+.|-          .-|...    ....|.+++|.|||+|.+|..+|+.|...|.
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~w----------Rllp~~----g~ekL~~arVLIVGaGGLGs~vA~~La~aGV  350 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMKW----------RILPDL----NLDIIKNTKVLLLGAGTLGCYVSRALIAWGV  350 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHHH----------HTCTTC----CHHHHHTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHHH----------hhcchh----hHHHHhCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            455554443 5667888888777777651          011111    1136899999999999999999999999897


Q ss_pred             -eEEEEcCCC
Q 021995          142 -NLLYHDRVK  150 (304)
Q Consensus       142 -~V~~~dr~~  150 (304)
                       +++.+|...
T Consensus       351 G~ItLvD~D~  360 (615)
T 4gsl_A          351 RKITFVDNGT  360 (615)
T ss_dssp             CEEEEECCCB
T ss_pred             CEEEEEcCCC
Confidence             488888753

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.28  E-value=0.0078  Score=52.87  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEee---ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+.||++.|.|.   |.||+.+++.|...|++|++.+|+.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999999997   6999999999999999999999865

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.28  E-value=0.014  Score=52.17  Aligned_cols=65  Identities=11%  Similarity=0.178  Sum_probs=39.8

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP  182 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvVi~~~p  182 (304)
                      +++|.|.|. |.||+.+++.|...|++|++.+|+..... .....+...+++++++++  .|+|+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            579999996 99999999999999999999997643211 111111122345566664  899987764

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.28  E-value=0.034  Score=51.35  Aligned_cols=30  Identities=27%  Similarity=0.445  Sum_probs=25.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEEEEc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHD  147 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~d  147 (304)
                      .+|||+|+|.||+.+++.|... +++|++.+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            3899999999999999998754 67877654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.26  E-value=0.083  Score=46.71  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=33.8

Q ss_pred             ccccCCCEEEEEee-Ch--hhHHHHHHhccCCCeEEEEcCCC
Q 021995          112 AYDLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       112 ~~~L~g~~vgIIG~-G~--IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +..+.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            45789999999995 44  99999999999999999999865

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.23  E-value=0.021  Score=55.46  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=73.0

Q ss_pred             CCCEEEEEeeChhhHH-HHHHhccCCCeEEEEcCCCCC-hhHHHhcCceecC-CHHhhcCcCCEEEEc--CCC-Chhhh-
Q 021995          116 EGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVN--TPL-TEKTR-  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~-lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~-~l~ell~~aDvVi~~--~p~-~~~t~-  188 (304)
                      ..++|.|||.|.+|.+ +|+.|+..|++|.++|....+ .+..++.|+.... .-.+.+.++|+|+..  +|. +|... 
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~  100 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVA  100 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHH
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHH
Confidence            3579999999999996 899999999999999976432 1234455765431 112346789999876  333 22211 


Q ss_pred             ------cccc-HHHHhc-CCCC-CEEEEcCCCchhchHHHHHHHHcCC
Q 021995          189 ------GMFD-KDRIAK-MKKG-VLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       189 ------~~i~-~~~l~~-mk~g-~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                            .++. .+++.. ++.. .+-|--+.|+.-...-+...|+...
T Consensus       101 a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  148 (494)
T 4hv4_A          101 AREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG  148 (494)
T ss_dssp             HHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence                  1222 234443 3432 4566666899888888888888755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	1e-40
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	3e-33
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-30
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	5e-30
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	1e-26
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	9e-18
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	2e-17
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	1e-14
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	3e-06
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	2e-04
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	0.002

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  137 bits (346), Expect = 1e-40
 Identities = 93/188 (49%), Positives = 117/188 (62%)

Query: 74  VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLL 133
           +SVAE  +M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L
Sbjct: 1   ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 134 QRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
           +RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + 
Sbjct: 61  RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120

Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253
           + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP  
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180

Query: 254 AMTPHVSG 261
            MTPH+SG
Sbjct: 181 GMTPHISG 188

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  118 bits (297), Expect = 3e-33
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 2/189 (1%)

Query: 74  VSVAEDELMRILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLL 132
           V+ AE  ++ +L   R    G   + +  W     +      L+ KT+G  G G IG+ L
Sbjct: 3   VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL 62

Query: 133 LQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192
            +R + F+ ++ Y D  +     E    A F + LD++L       +N P T +TR  F+
Sbjct: 63  AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 122

Query: 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 252
           K  I  + +G ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN
Sbjct: 123 KATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPN 181

Query: 253 QAMTPHVSG 261
             + PH+  
Sbjct: 182 TFLFPHIGS 190

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  111 bits (277), Expect = 2e-30
 Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 5/188 (2%)

Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N+ S AE  L  +L   R        +    W  +  +       GKTVG VG GRIG+L
Sbjct: 1   NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQL 58

Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           + QR+  F   ++ +D   + P    + G +     D +L + D + V+ P T +T G+ 
Sbjct: 59  VAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLI 116

Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
           DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   + 
Sbjct: 117 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELA 175

Query: 252 NQAMTPHV 259
              +TPH+
Sbjct: 176 QVVVTPHL 183

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 10/194 (5%)

Query: 72  NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
           N  SVAE  +  +L+L+R     + +   G  N   +A  +++  GK +G +G G IG  
Sbjct: 1   NTRSVAELVIGELLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQ 58

Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
           L    +     + ++D     P       A   + L  +L   D+V ++ P    T+ M 
Sbjct: 59  LGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM 114

Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPW 247
               I+ MK G L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P 
Sbjct: 115 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 174

Query: 248 RYMPNQAMTPHVSG 261
               N  +TPH+ G
Sbjct: 175 AEFDNVLLTPHIGG 188

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-26
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIG 129
             A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G
Sbjct: 2   ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 61

Query: 130 KLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
           + +  R K F  N+L++D   +   +E+  G +    L  +L   D V ++  L E    
Sbjct: 62  QAVALRAKAFGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWR 248
           + +   + +M++G  +VN ARG ++D +A+  A   G I G + DV   +P      P +
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 249 YMPNQAMTPHV 259
             PN   TPH 
Sbjct: 181 DAPNLICTPHA 191

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 77.9 bits (190), Expect = 9e-18
 Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 18/198 (9%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           ++AE   ++   ++R       +V   +   A       ++  + VG VG G IG++ +Q
Sbjct: 3   AIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQ 60

Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
            ++ F   ++ +D  +       E    + + LD +  + D++ ++ P       M + +
Sbjct: 61  IMEGFGAKVITYDIFRNPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE 117

Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY----- 249
            IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ DV+  +    +  W       
Sbjct: 118 SIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPD 177

Query: 250 --------MPNQAMTPHV 259
                    PN  +TP  
Sbjct: 178 ARLADLIARPNVLVTPKT 195

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 76.8 bits (187), Expect = 2e-17
 Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 18/200 (9%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           ++AE  L   L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++
Sbjct: 4   AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIK 62

Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
             K F   ++ +D   M               L+ +  + D++ ++ P  E+   + ++ 
Sbjct: 63  LFKGFGAKVIAYDPYPMKGDHPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA 118

Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA------------- 241
               MK G +++N AR  ++DTQA++    SG +AG   D +  +               
Sbjct: 119 AFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKD 178

Query: 242 PKDHPWRYMPNQAMTPHVSG 261
           P       MPN  ++PH++ 
Sbjct: 179 PLWDELLGMPNVVLSPHIAY 198

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 69.0 bits (167), Expect = 1e-14
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 75  SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
           +VAE  L  +L   +  +    ++  G++           ++G+ V  +G G IG  + +
Sbjct: 3   AVAEFALALLLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGK 59

Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
            L      +    R   +         +F   L+  L +    V   PL + TRG+    
Sbjct: 60  ILAALGAQVRGFSRTPKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQ 113

Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQPAPKDHPWRYMPNQ 253
            +A M +  + VN  R  ++D   V+          ++ DVW       KD  +  +PN 
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173

Query: 254 AMTPHVSG 261
             TP V+G
Sbjct: 174 VATPWVAG 181

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 111 RAYDLE--GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 168
           RA D+   GK     G G +GK   Q L+ F   ++  +   ++        A  E    
Sbjct: 16  RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA-----LQAAMEGYEV 70

Query: 169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN-NARGAIMDTQAVVDACSS 225
           T + +          T     +       +MK   ++ N       +D + + +    
Sbjct: 71  TTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE 128

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 12/75 (16%)

Query: 37  KIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAE--------DELMRILILV 88
           K+      G+++  +     +A    +TVAEVT  N  ++           E++      
Sbjct: 115 KLALTAGIGSDHVDLQ----SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEG 170

Query: 89  RNFLPGHHQVISGEW 103
           R     +  V  G  
Sbjct: 171 RPIRDEYLIVQGGAL 185

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179
           VG +G G +GK + + L     +L+  DR           GA+       +  +CD+++ 
Sbjct: 3   VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62

Query: 180 NTPLTEKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237
             P +   + +   +   I   K G ++++ +  A + ++ + DA  +  +      V  
Sbjct: 63  MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG 122

Query: 238 PQPAPKDHPWRYM 250
            +P   D     M
Sbjct: 123 GEPKAIDGTLSVM 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.66
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.64
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.63
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.6
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.53
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.52
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.49
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.48
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.47
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.46
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.46
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.4
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.37
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.28
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.23
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.19
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.19
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.16
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.08
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.0
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.96
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.93
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.82
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.76
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.75
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.7
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.64
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.5
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.49
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.48
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.38
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.37
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.35
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.34
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.22
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.21
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.19
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.18
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.15
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.1
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.08
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.06
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.02
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.01
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.0
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.99
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.91
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.9
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.86
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.85
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.78
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.77
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.75
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.73
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.72
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.68
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.61
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.61
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.61
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.52
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.49
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.49
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.48
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.44
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.43
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.43
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.43
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.42
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.39
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.36
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.33
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.31
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.3
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.29
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.29
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	97.27
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.27
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.25
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.24
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.24
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.23
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.23
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.23
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.2
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.2
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.2
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.2
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.15
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.15
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.06
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.03
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.0
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.99
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.93
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.92
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.91
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.9
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.89
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.86
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.79
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.78
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.78
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.77
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.74
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.72
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.71
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.69
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.68
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.62
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.61
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.61
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.6
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.6
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	96.59
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.58
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.55
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.54
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.52
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.44
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.43
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.39
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.36
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.36
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.35
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.31
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.27
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.25
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	96.25
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.21
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.08
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.03
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.01
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.97
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.95
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.88
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.87
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	95.86
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.81
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.78
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.78
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.76
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.68
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.64
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.61
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.59
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.59
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.54
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.52
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.51
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.49
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.47
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.42
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.41
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.35
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.33
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.33
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.29
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.28
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.27
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.27
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.27
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	95.23
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.2
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	95.18
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.18
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.13
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.13
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.11
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.05
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.02
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	95.02
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.96
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.88
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.87
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.82
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.79
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.79
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.75
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.74
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.74
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.73
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.73
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.69
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.68
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.68
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.57
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.57
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.55
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.53
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.52
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.46
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.43
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.4
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.39
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.38
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.35
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.29
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.21
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.21
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.21
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.1
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.07
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.03
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.03
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.03
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.0
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.99
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.95
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.87
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.86
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.84
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.75
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	93.75
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.73
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.69
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.69
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.62
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.61
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	93.59
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.58
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.55
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.54
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.53
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.48
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.45
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.44
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.41
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.22
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.18
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.12
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.1
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.07
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.01
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.98
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.98
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.75
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.49
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.4
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.4
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.26
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.25
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.18
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	92.17
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.14
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.1
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.94
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.9
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.82
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.49
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.43
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.22
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.18
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.13
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.11
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.1
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	90.06
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.03
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	89.87
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.81
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.38
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.1
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.03
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.02
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	88.89
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	88.73
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.7
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.66
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.29
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.87
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	87.81
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.62
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.53
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.51
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.47
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.17
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	87.0
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.88
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	86.68
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	86.41
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	86.36
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.26
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.23
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.87
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.58
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.37
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.23
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.23
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.22
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	85.19
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.91
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.87
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	84.64
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	84.59
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.53
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.35
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.18
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.17
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.91
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.58
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.58
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	83.48
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	83.3
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.13
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.98
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.94
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	82.86
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.45
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.23
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.23
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.2
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.94
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.79
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	81.65
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.2
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	80.89
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.81
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.42
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.21
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.11
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	80.01

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.1e-51  Score=352.60  Aligned_cols=184  Identities=34%  Similarity=0.573  Sum_probs=170.6

Q ss_pred             ChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995           72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus        72 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      |+.+||||++++||++.|++..+++.++++.|.+..  ..+.++.|+++||+|+|.||+.+|+++++|||+|++||+...
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~--~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc--cccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            678999999999999999999999999999998654  346789999999999999999999999999999999998653


Q ss_pred             ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995          152 DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  231 (304)
Q Consensus       152 ~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga  231 (304)
                       .+.....+++. .++++++++||+|++|+|+|++|+++||++.|++||++++|||+|||++||++||+++|++|+|.||
T Consensus        79 -~~~~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a  156 (184)
T d1ygya1          79 -PARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA  156 (184)
T ss_dssp             -HHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEE
T ss_pred             -hhHHhhcCcee-ccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEE
Confidence             34445556665 4899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCccCCCCeEEccCCC
Q 021995          232 SGDVWNPQPAPKDHPWRYMPNQAMTPHVS  260 (304)
Q Consensus       232 ~lDV~~~ep~~~~~~l~~~~nv~lTPHia  260 (304)
                      +||||++||++ ++|||.+|||++|||||
T Consensus       157 ~lDV~~~EP~~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         157 GLDVFATEPCT-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             EESSCSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred             EEeCCCCCCCC-CchHhcCCCEEECCCCC
Confidence            99999999997 78999999999999996

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=1e-50  Score=350.11  Aligned_cols=189  Identities=28%  Similarity=0.457  Sum_probs=173.0

Q ss_pred             hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccc-cccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995           73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus        73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      +.+|||+++++||+++|++...++.+++|.|... .....++++.|+++||||+|+||+.+|+++++||++|.+||+...
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            4689999999999999999999999999999643 223457899999999999999999999999999999999998766


Q ss_pred             ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995          152 DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  231 (304)
Q Consensus       152 ~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga  231 (304)
                      ........+....+++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|+|.||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            55555555566667999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCccCCCCeEEccCCCcC
Q 021995          232 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       232 ~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~  262 (304)
                      +||||++|| +.++|||.+|||++|||+|++
T Consensus       162 ~lDV~~~EP-~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEP-NINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTT-SCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCC-CCCchHHcCCCEEECCccccC
Confidence            999999999 567899999999999999974

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=5.6e-51  Score=351.14  Aligned_cols=187  Identities=50%  Similarity=0.876  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh
Q 021995           75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ  154 (304)
Q Consensus        75 ~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~  154 (304)
                      +||||+++++|++.|++...++.+++|.|.+......+++|.|+++||||+|+||+.+|++|++||++|.+||+...+..
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            79999999999999999999999999999764433356789999999999999999999999999999999999877777


Q ss_pred             HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          155 LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       155 ~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      .....+.....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||+||
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lD  161 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD  161 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEES
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEe
Confidence            77777777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccCCCCeEEccCCCc
Q 021995          235 VWNPQPAPKDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       235 V~~~ep~~~~~~l~~~~nv~lTPHia~  261 (304)
                      ||++||++.++||+.+||+++|||+||
T Consensus       162 V~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         162 VWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCCCCCCCCChHHcCCCeEEccccCc
Confidence            999999999999999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=2.4e-50  Score=348.14  Aligned_cols=187  Identities=29%  Similarity=0.434  Sum_probs=171.7

Q ss_pred             hHHHHHHHHHHHHHHhCcchhhHHHHhCCccccc-----ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcC
Q 021995           74 VSVAEDELMRILILVRNFLPGHHQVISGEWNVAG-----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR  148 (304)
Q Consensus        74 ~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~-----~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr  148 (304)
                      ++|||++++++|++.|++...++.+++|.|.+..     ....+.+|.|+||||||+|+||+.+|+++++|||+|.+||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999997532     12347899999999999999999999999999999999999


Q ss_pred             CCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          149 VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       149 ~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      ... .+.....++...+++++++++||+|++|+|++++|+++++++.|++||++++|||+|||++||++||+++|++|++
T Consensus        81 ~~~-~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i  159 (193)
T d1mx3a1          81 YLS-DGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRI  159 (193)
T ss_dssp             TSC-TTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE
T ss_pred             ccc-ccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCc
Confidence            654 3444556777778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecCCCCCCC-CCCCccCCCCeEEccCCCc
Q 021995          229 AGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       229 ~ga~lDV~~~ep~~-~~~~l~~~~nv~lTPHia~  261 (304)
                      .||++|||++||++ .++||+.+|||++|||+|+
T Consensus       160 ~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         160 RGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             eEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999987 5789999999999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=9.6e-50  Score=346.21  Aligned_cols=185  Identities=25%  Similarity=0.420  Sum_probs=166.1

Q ss_pred             hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995           73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus        73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      .++||||+++++|++.|++...++.+++|.|.+... ..+++|.|++|||||+|+||+.+|++|++|||+|++||+....
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~-~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC-CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccC-cccccccceeeeeeecccccccccccccccceeeeccCCccch
Confidence            578999999999999999999999999999986432 3578999999999999999999999999999999999987543


Q ss_pred             hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995          153 PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  232 (304)
Q Consensus       153 ~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~  232 (304)
                      ..   ..... ..++++++++||+|++|+|++++|+++|+++.|++||++++|||+|||++||++||+++|++|+|.||+
T Consensus        81 ~~---~~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~  156 (199)
T d1dxya1          81 GD---HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVG  156 (199)
T ss_dssp             SC---CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEE
T ss_pred             hh---hcchh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEe
Confidence            21   11233 358999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCC-------------CCCCccCCCCeEEccCCCcC
Q 021995          233 GDVWNPQPAP-------------KDHPWRYMPNQAMTPHVSGT  262 (304)
Q Consensus       233 lDV~~~ep~~-------------~~~~l~~~~nv~lTPHia~~  262 (304)
                      ||||++||++             ..+||+.+|||++|||+|||
T Consensus       157 lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         157 IDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             ESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             ccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            9999999962             23567889999999999996

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-48  Score=336.73  Aligned_cols=184  Identities=29%  Similarity=0.445  Sum_probs=159.4

Q ss_pred             ChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995           72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus        72 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      |+.+||||+++++|++.|+++..+..++++.|.+..  ..+++|.|++|||||+|.||+.+|+++++|||+|++||+...
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~--~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc--cccccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            689999999999999999999999999999998654  346789999999999999999999999999999999998653


Q ss_pred             ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995          152 DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  231 (304)
Q Consensus       152 ~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga  231 (304)
                      ...    .....+.++++++++||+|++|+|++++|+++|+++.|+.||++++|||+|||++||++||+++|+++++.||
T Consensus        79 ~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a  154 (188)
T d1sc6a1          79 LPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGA  154 (188)
T ss_dssp             CCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEE
T ss_pred             chh----hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEE
Confidence            221    1234456899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCC----CCCCccCCCCeEEccCCCc
Q 021995          232 SGDVWNPQPAP----KDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       232 ~lDV~~~ep~~----~~~~l~~~~nv~lTPHia~  261 (304)
                      +||||++||..    ..+||+++|||++|||+||
T Consensus       155 ~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         155 AIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             EEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             EEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            99999999984    4568999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.8e-48  Score=333.25  Aligned_cols=180  Identities=23%  Similarity=0.346  Sum_probs=164.7

Q ss_pred             hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995           73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus        73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      +++||||+++++|+++|++..+.+.+++|.|.+..   ...+|.|++|||||+|.||+.+++++++||++|.+|||++..
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~---~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC---CCCcccCceEEEeccccccccceeeeeccccccccccccccc
Confidence            57999999999999999999999999999997653   234799999999999999999999999999999999997632


Q ss_pred             hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995          153 PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  232 (304)
Q Consensus       153 ~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~  232 (304)
                      .      ......++++++++||+|++|+|++++|+++|+++.|+.||++++|||+|||++||+++|+++|+++++.||+
T Consensus        78 ~------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aa  151 (181)
T d1qp8a1          78 G------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFA  151 (181)
T ss_dssp             S------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEE
T ss_pred             c------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEE
Confidence            1      1234568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCC-CCCCCCCccCCCCeEEccCCCc
Q 021995          233 GDVWNPQ-PAPKDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       233 lDV~~~e-p~~~~~~l~~~~nv~lTPHia~  261 (304)
                      +|||++| |++.++||+.+|||++|||+||
T Consensus       152 lDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         152 SDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             ESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             EecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            9999765 6678899999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=9.6e-49  Score=339.03  Aligned_cols=184  Identities=26%  Similarity=0.411  Sum_probs=164.5

Q ss_pred             hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995           73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus        73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      .++||||+++++|+++|++...++.+++++|.+..  ..+++|.|+||||||+|+||+.+|+++++|||+|++||+...+
T Consensus         1 p~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~--~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~   78 (197)
T d1j4aa1           1 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP   78 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CCHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCC--CcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccc
Confidence            36899999999999999999999999999887654  3578999999999999999999999999999999999986532


Q ss_pred             hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995          153 PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  232 (304)
Q Consensus       153 ~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~  232 (304)
                       . ....+. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+
T Consensus        79 -~-~~~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~  155 (197)
T d1j4aa1          79 -E-LEKKGY-YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYA  155 (197)
T ss_dssp             -H-HHHTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEE
T ss_pred             -c-ccccee-eeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchhee
Confidence             2 222333 3568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCC-------------CCCCCccCCCCeEEccCCCc
Q 021995          233 GDVWNPQPA-------------PKDHPWRYMPNQAMTPHVSG  261 (304)
Q Consensus       233 lDV~~~ep~-------------~~~~~l~~~~nv~lTPHia~  261 (304)
                      ||||++||.             +.++||+.+|||++|||+|+
T Consensus       156 lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         156 MDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             ESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             eeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            999999964             33456889999999999985

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=1.9e-17  Score=132.55  Aligned_cols=81  Identities=21%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             cccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHH
Q 021995           19 FLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQ   97 (304)
Q Consensus        19 ~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~   97 (304)
                      +++..+++++++ +++|+||+|+++++|+|    ++|+++|+++||.|+|+||+++.+|||+++++||+++|++..+.+.
T Consensus        47 i~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d----~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~  122 (130)
T d1ygya2          47 LVRSATTVDAEVLAAAPKLKIVARAGVGLD----NVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF  122 (130)
T ss_dssp             EECSSSCBCHHHHHTCTTCCEEEESSSCCT----TBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEcCcccchHHHHhhcccceEEeeeccccc----chhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            346778899987 78999999999999998    5569999999999999999999999999999999999999877666


Q ss_pred             HHhCCc
Q 021995           98 VISGEW  103 (304)
Q Consensus        98 ~~~~~w  103 (304)
                      +++|.|
T Consensus       123 vr~g~~  128 (130)
T d1ygya2         123 VPDAVN  128 (130)
T ss_dssp             CTTBCS
T ss_pred             cccCcc
Confidence            666666

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.1e-16  Score=129.15  Aligned_cols=108  Identities=17%  Similarity=0.232  Sum_probs=92.7

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      ..|.||+++|+|+|.+|+.+|+++++||++|+++++.|...-++...|.+.. +++++++.+|+++++..    ++++|+
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTG----n~~vI~   94 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTG----CIDIIL   94 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSS----CSCSBC
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCC----Cccchh
Confidence            4689999999999999999999999999999999998755555556676654 89999999999988875    668999


Q ss_pred             HHHHhcCCCCCEEEEcC-CCchhchHHHHHHHHc
Q 021995          193 KDRIAKMKKGVLIVNNA-RGAIMDTQAVVDACSS  225 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~-rg~~vd~~aL~~aL~~  225 (304)
                      .+.|+.||+|+++.|++ +..-+|.++|.+...+
T Consensus        95 ~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1          95 GRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             HHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSE
T ss_pred             HHHHHhccCCeEEEEeccccceecHHHHhhccce
Confidence            99999999999999997 5666888888775433

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.63  E-value=1.2e-18  Score=137.77  Aligned_cols=83  Identities=22%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             hchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCC
Q 021995           24 SRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGE  102 (304)
Q Consensus        24 ~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~  102 (304)
                      +++++++ +++|+||||+++++|+|+++    ++.+ ++||.|+|++|+++.+||||+++++|++.|+            
T Consensus        38 ~~~~~~~l~~~~~Lk~i~~~~aG~D~i~----~~~~-~~~i~v~n~~g~~~~~vae~~~~~il~~~r~------------  100 (121)
T d1qp8a2          38 SRITAEELAKMPRLKFIQVVTAGLDHLP----WESI-PPHVTVAGNAGSNGYGNERVWRQMVMEAVRN------------  100 (121)
T ss_dssp             SCCCHHHHHHCTTCCCEEBSSSCCTTSC----CTTS-CTTSCEECCCSSSSSSCHHHHHHHHHHHHHH------------
T ss_pred             eccCHHHHhcCCCceEEEecccCcCCCC----HHHh-ccCeEEEECCCCChHHHHHHHHHHHHHhcCC------------
Confidence            4576665 88999999999999999765    5566 5799999999999999999999999999983            


Q ss_pred             cccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995          103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN  140 (304)
Q Consensus       103 w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G  140 (304)
                                       ++|+|+|.||+++|+++++||
T Consensus       101 -----------------l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         101 -----------------LITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             -----------------HHHHHTTSCCSCBCCGGGTC-
T ss_pred             -----------------EEEEcCCHHHHHHHHHHHhcC
Confidence                             589999999999999999997

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.60  E-value=6.4e-16  Score=127.50  Aligned_cols=115  Identities=19%  Similarity=0.272  Sum_probs=102.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~  195 (304)
                      ++|||||+|.||+.+|++|...|++|++|||++.+.+.+.+.+.....+.+|++++||+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            479999999999999999999999999999988766777777888888999999999999999999888887762  458


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      +..+++|.++||++....-....+.+.+.+..+.  .+|
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd  117 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLD  117 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eec
Confidence            8899999999999999999999999999998887  455

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.53  E-value=1.3e-14  Score=119.75  Aligned_cols=116  Identities=19%  Similarity=0.261  Sum_probs=101.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--cHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~~~~  195 (304)
                      ++|||||+|.||..+|++|...|++|.+|||++.+.+.+...+.....++.+++..+|+|++|+|..+..+.++  ....
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            58999999999999999999999999999998766666777787777899999999999999999888777665  2457


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeec
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  235 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV  235 (304)
                      +..+++|.++||++....-+...+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7889999999999999999999999999998887  5564

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.52  E-value=3e-14  Score=117.36  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=101.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc-eecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      ++|||||+|.||..+|+.|+..|++|++|||++...+.+.+.+. ....+..+.+++||+|++++|.. .+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh-hhhh
Confidence            58999999999999999999999999999998765566666664 22234446789999999999953 566666 5678


Q ss_pred             hcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCC-CCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995          197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  268 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~-ep~~~~~~l~~~~nv~lTPHia~~t~e~~~  268 (304)
                      +.++++.++++++.......... ..+..+-+..-.+...+. .|......|+....+++||+-++. .+..+
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~-~~~~~  149 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PEQLA  149 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HHHHH
T ss_pred             hhcccccceeeccccchHHHHHH-HHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC-HHHHH
Confidence            88999999999987654444433 344444333222222111 122234456777779999987654 34333

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.49  E-value=7.9e-15  Score=117.26  Aligned_cols=79  Identities=14%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995           18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH   96 (304)
Q Consensus        18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~   96 (304)
                      .++++.+++++++ +++|+||+|++.++|+|+    +|+++|+++||.|+|+||++. ++|||+++++|+++|++++.  
T Consensus        47 vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~----iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a--  119 (133)
T d1mx3a2          47 ALMYHTITLTREDLEKFKALRIIVRIGSGFDN----IDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA--  119 (133)
T ss_dssp             EEECSSSCBCHHHHTTCSSCCEEEESSSCCTT----BCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHH--
T ss_pred             EEEEeCCCcCHHHHhhCCCCeEEEEcCCCccc----EeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHH--
Confidence            3577889999997 778999999999999985    569999999999999999987 47999999999999998665  


Q ss_pred             HHHhCCccc
Q 021995           97 QVISGEWNV  105 (304)
Q Consensus        97 ~~~~~~w~~  105 (304)
                        .+|.|+.
T Consensus       120 --~~g~~~~  126 (133)
T d1mx3a2         120 --ITGRIPD  126 (133)
T ss_dssp             --HHSCTTT
T ss_pred             --Hhccccc
Confidence              3455543

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.48  E-value=8.4e-15  Score=122.06  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             hhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHH--------HHHHHHHHhCcch
Q 021995           23 SSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDE--------LMRILILVRNFLP   93 (304)
Q Consensus        23 ~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~a--------l~~~L~~~R~~~~   93 (304)
                      ++.+++++ +++|+||+|++.++|+|+    +|+++|+++||+|+|+||+|+.+||||+        +.+++...|++..
T Consensus       100 ~~~lt~e~i~~ap~LKlI~~~g~G~D~----VDl~aa~e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~  175 (186)
T d2naca2         100 PAYLTPERIAKAKNLKLALTAGIGSDH----VDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRD  175 (186)
T ss_dssp             CCCBCHHHHHHCTTCCEEEESSSCCTT----BCHHHHHHTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCG
T ss_pred             ccccCHHHHhcCccceEEEEeccCCcc----ccHHHHHhCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            56788886 889999999999999985    5599999999999999999999999999        7788899999998


Q ss_pred             hhHHHHhCCc
Q 021995           94 GHHQVISGEW  103 (304)
Q Consensus        94 ~~~~~~~~~w  103 (304)
                      .+..+++|+|
T Consensus       176 ~~~~v~~G~~  185 (186)
T d2naca2         176 EYLIVQGGAL  185 (186)
T ss_dssp             GGEEEETTEE
T ss_pred             hhhhhhcccc
Confidence            8888888887

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.47  E-value=6.8e-15  Score=117.43  Aligned_cols=71  Identities=13%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             ccchhchhHHH-hcC--CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchh
Q 021995           20 LRSSSRFSRHY-ASS--GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPG   94 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~--~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~   94 (304)
                      ++..+++++++ +++  ++||+|++.++|+|+    +|+++|+++||+|+|+||+++.+||||+++++|++.|++...
T Consensus        50 ~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d~----ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          50 SLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDN----IDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             ECCSSCBCHHHHHHHHHTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EecCCCCCHHHHhhcccCCeEEEEEccccccc----ccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            56778899987 543  589999999999985    569999999999999999999999999999999999987654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.46  E-value=4.5e-13  Score=110.54  Aligned_cols=148  Identities=11%  Similarity=0.005  Sum_probs=108.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHh-hcCcCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~--~~~~~l~e-ll~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      |+|+|||+|.||.++|+.|+..|+  +|++||+++...+.+.+.+.  ....+.++ ....+|+|++|+|.. .+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhh-
Confidence            579999999999999999988775  79999998766666777665  23334443 345799999999943 344444 


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCC-CCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  268 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~-ep~~~~~~l~~~~nv~lTPHia~~t~e~~~  268 (304)
                      ++....+++++++++++.....-.+++.+.+...-+.+--+..-+. .|......|+....+++|||-.. ..+..+
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~~  155 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRLK  155 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHHH
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHHH
Confidence            5677889999999999997777677777778776666655554433 24445667888889999998764 444444

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.46  E-value=8e-14  Score=114.09  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=87.9

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      -|.||++.|+|||.+|+.+|++|+++|++|++++.+|...-++.-.|.+. .+++++++.+|+++.++.    ..++|+.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTG----n~~vI~~   94 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTG----NVDVIKL   94 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCS----SSSSBCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCC----CCccccH
Confidence            58999999999999999999999999999999999886666666677776 489999999999999987    3468999


Q ss_pred             HHHhcCCCCCEEEEcCCCch-hchHHHH
Q 021995          194 DRIAKMKKGVLIVNNARGAI-MDTQAVV  220 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~-vd~~aL~  220 (304)
                      +.|.+||+|+++.|++.... +|-++|.
T Consensus        95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          95 EHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             HHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             HHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            99999999999999998764 3444443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.40  E-value=2.6e-13  Score=113.16  Aligned_cols=114  Identities=11%  Similarity=0.110  Sum_probs=95.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC--------ceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g--------~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+|||||+|.||..+|++|...|++|++|||++.+.+.+.+.+        .....++.+.+..+|.+++++|..+.+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            5799999999999999999999999999999876555544432        22234566788999999999999888777


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  234 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD  234 (304)
                      ++ .+.+..+++|.++||++....-+...+.+.+.+..+.  .+|
T Consensus        83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~ld  124 (176)
T d2pgda2          83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVG  124 (176)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eec
Confidence            65 5788999999999999999999999999999998887  556

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.3e-13  Score=110.07  Aligned_cols=67  Identities=19%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhC
Q 021995           20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRN   90 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~   90 (304)
                      +++.+.+++++ +++|+||+|+++++|+|    ++|+++|+++||.|+|+||+++.+|||++++||++..|+
T Consensus        53 ~~~~~~i~~~~i~~~p~Lk~I~~~gvG~D----~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~  120 (132)
T d1sc6a2          53 LRSRTHLTEDVINAAEKLVAIGAFAIGTN----QVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIK  120 (132)
T ss_dssp             ECSSCCBCHHHHHHCSSCCEEEECSSCCT----TBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHH
T ss_pred             EecccccChhhhhccccceeEEEeccccc----ccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhH
Confidence            55778899887 88999999999999998    456999999999999999999999999876666554443

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.28  E-value=2.1e-12  Score=102.52  Aligned_cols=66  Identities=9%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             ccchhchhHHH-hcCC-CcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHh
Q 021995           20 LRSSSRFSRHY-ASSG-SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVR   89 (304)
Q Consensus        20 ~~~~~~~~~~l-~~~~-~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R   89 (304)
                      ++..+++++++ +++| +||+|+++++|+|    ++|+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus        50 ~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d----~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          50 ITLNEKCRKEVIDRIPENIKCISTYSIGFD----HIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             EETTSCBCHHHHHHSCTTCCEEEEESSCCT----TBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             EcCCchhhhHHHhhhhhcceeeeecccCCc----cccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            45678999997 6776 7999999999998    45699999999999999999999999976655444443

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.23  E-value=1.4e-12  Score=104.11  Aligned_cols=66  Identities=8%  Similarity=0.068  Sum_probs=56.5

Q ss_pred             ccchhchhHHH-hc--CCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcc
Q 021995           20 LRSSSRFSRHY-AS--SGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFL   92 (304)
Q Consensus        20 ~~~~~~~~~~l-~~--~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~   92 (304)
                      .+..+++++++ ++  .++||+|++.++|+|+    +|+++|+++||.|+|+|++   ++||+++++||+++|++.
T Consensus        51 v~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~----ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~  119 (134)
T d1j4aa2          51 VYQQLDYIAETLQALADNGITKMSLRNVGVDN----IDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN  119 (134)
T ss_dssp             ECCSSCBCHHHHHHHHHTTCCEEEESSSCCTT----BCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH
T ss_pred             EecCCCcCHHHHhhhcccCeeEEEEccCCcCc----cCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh
Confidence            45678899887 54  3579999999999995    5699999999999999998   479999999999999753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.19  E-value=1.1e-11  Score=100.62  Aligned_cols=106  Identities=12%  Similarity=0.138  Sum_probs=81.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  197 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~  197 (304)
                      ++|||||+|.||+.+|+.|...|++|+++++++.+.......+.....+++|++++||+|++|+|.......+  .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~--~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAA--RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHH--HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHH--Hhhcc
Confidence            4899999999999999999999999999998765554444444444567899999999999999965443222  22333


Q ss_pred             cCCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          198 KMKKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       198 ~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      .  .+.++|+++.........+.+.+++.+
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhccC
Confidence            2  368999999998888888888886643

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=1.9e-11  Score=99.65  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=87.2

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHh
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  197 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~  197 (304)
                      ||||||+|.||..+|++|...|+.+ +|+++..+... ....+.. . +..+.+.++|++++++|..++..... ...+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~   77 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSE-A-VPLERVAEARVIFTCLPTTREVYEVA-EALYP   77 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCE-E-CCGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCc-c-cccccccceeEEEecccchhhhhhhh-ccccc
Confidence            6999999999999999999888765 56665533332 2333333 3 33466678999999999887766554 57889


Q ss_pred             cCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeec
Q 021995          198 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  235 (304)
Q Consensus       198 ~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV  235 (304)
                      .++++.++||+++...-....+.+.+++..+.  .+|.
T Consensus        78 ~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          78 YLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            99999999999999999999999999998887  5663

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.16  E-value=4.5e-11  Score=97.10  Aligned_cols=100  Identities=13%  Similarity=0.287  Sum_probs=81.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  196 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l  196 (304)
                      ++|||||+|+||+++++.|...|.+|++|+|+..+.+. .+++|+....+.++++++||+|+++++.  +   .+ .+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp--~---~~-~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKP--Q---LF-ETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCG--G---GH-HHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecch--H---hH-HHHh
Confidence            47999999999999999999999999999997644333 4566888888999999999999999973  2   11 5678


Q ss_pred             hcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995          197 AKMKKGVLIVNNARGAIMDTQAVVDACSS  225 (304)
Q Consensus       197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~  225 (304)
                      +.++++.++|++..|  +..+.|.+.+..
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhcc
Confidence            889999999999877  455666666644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.08  E-value=1.1e-10  Score=96.66  Aligned_cols=113  Identities=16%  Similarity=0.150  Sum_probs=90.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc--------eecCCH---HhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA--------KFEEDL---DTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~--------~~~~~l---~ell~~aDvVi~~~p~~~~  186 (304)
                      ++|||||+|.||..+|++|...|++|++|||++.+.+.+.+.+.        ....+.   -..+..++.++.+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            57999999999999999999999999999998755554444332        112233   3456788999999987776


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  231 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga  231 (304)
                      ....+ ......++++.++||++....-+...+.+.|.+..+...
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~l  125 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFL  125 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEe
Confidence            66665 467788999999999999999999999999998888743

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=7.6e-11  Score=95.19  Aligned_cols=89  Identities=16%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  199 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~m  199 (304)
                      |||||+|+||+.+++.|+..+..+.+|+|++.+.+...+.+.....+++++++++|+|++|+|...-      .+.+..+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i------~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYI------KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTH------HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhh------hHHHhhh
Confidence            7999999999999999987444456899987665555555544456888999999999999995422      4556666


Q ss_pred             C-CCCEEEEcCCCchh
Q 021995          200 K-KGVLIVNNARGAIM  214 (304)
Q Consensus       200 k-~g~ilVn~~rg~~v  214 (304)
                      + ++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence            4 79999999977654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.96  E-value=7.6e-10  Score=89.17  Aligned_cols=95  Identities=16%  Similarity=0.238  Sum_probs=74.3

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      ..-++|+||| +|.||+.+|+.|+..|++|.+||++..             ...++.+..+|++++++|... +.. +..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~-------------~~~~~~~~~~~~v~~~~~~~~-~~~-v~~   71 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPINL-TLE-TIE   71 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGGG-HHH-HHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc-------------cccchhhhhccccccccchhh-hee-eee
Confidence            4567999999 999999999999999999999998642             134567789999999999543 323 346


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      +.+..++++++++|++.-+.--.+++.+.+.
T Consensus        72 ~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~  102 (152)
T d2pv7a2          72 RLKPYLTENMLLADLTSVKREPLAKMLEVHT  102 (152)
T ss_dssp             HHGGGCCTTSEEEECCSCCHHHHHHHHHHCS
T ss_pred             cccccccCCceEEEecccCHHHHHHHHHHcc
Confidence            7889999999999999866554555555443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.93  E-value=1.8e-09  Score=88.87  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=78.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc---------------eecCCHHhhcCcCCEEEEcC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---------------KFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~---------------~~~~~l~ell~~aDvVi~~~  181 (304)
                      .|||+|||.|.||..+|..|...|++|.+|+|++...+...+.+.               ....++.|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            379999999999999999999999999999997644444333321               12357899999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  228 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i  228 (304)
                      |... +..++ ++....++++++++-. .|....+..+.+.+.....
T Consensus        81 ~~~~-~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          81 PAIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CGGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTTC
T ss_pred             chhH-HHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhcC
Confidence            8543 33333 5667788999988744 4444445555666665543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.83  E-value=1e-08  Score=85.02  Aligned_cols=95  Identities=21%  Similarity=0.275  Sum_probs=77.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecC----------------------------
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE----------------------------  165 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~----------------------------  165 (304)
                      .+..-+|.|||.|..|...++.++++|++|.++|.+....+..++++.+..+                            
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            3556799999999999999999999999999999988777777776643321                            


Q ss_pred             -CHHhhcCcCCEEEEcC--CCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          166 -DLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       166 -~l~ell~~aDvVi~~~--p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                       .+.+.++++|+|+.+.  |. .....++.++.++.||+|+++||++
T Consensus       106 ~~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEe
Confidence             1334588999999764  53 3456789999999999999999997

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.82  E-value=1.9e-09  Score=88.28  Aligned_cols=96  Identities=13%  Similarity=0.167  Sum_probs=76.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC---cee----cCCHHhhcCcCCEEEEcCC-CCh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG---AKF----EEDLDTMLPKCDIVVVNTP-LTE  185 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g---~~~----~~~l~ell~~aDvVi~~~p-~~~  185 (304)
                      .+...+|.|||.|..|...++.++.+|.+|.++|.+....+..+...   .+.    ...+++.+++||+|+.++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            35678999999999999999999999999999998764444333321   111    1346788999999998752 344


Q ss_pred             hhhccccHHHHhcCCCCCEEEEcC
Q 021995          186 KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ....+|.++.++.||+|+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            567899999999999999999997

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.76  E-value=3.8e-09  Score=85.19  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      ++|||||+|+||+++++.|...| .+|.++||++...+.. +++++...++.++ +.++|+|+++++  |.  .+  .+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~--~~--~~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQ--DM--EAA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HH--HH--HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HH--HH--HHh
Confidence            47999999999999999876555 8999999987554443 4567777766655 578999999997  32  11  344


Q ss_pred             HhcCC-CCCEEEEcCCCchhchHHHHHHHH
Q 021995          196 IAKMK-KGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       196 l~~mk-~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      ++.++ .+.++|.+.-|-.  .+.+.+.+.
T Consensus        74 ~~~l~~~~~~viS~~ag~~--~~~l~~~l~  101 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGLS--VGTLSRYLG  101 (152)
T ss_dssp             HTTCCCTTCEEEECCTTCC--HHHHHHHTT
T ss_pred             HHHHhhcccEEeecccCCC--HHHHHHHhC
Confidence            55554 5789999988764  455666664

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.75  E-value=3.1e-08  Score=83.65  Aligned_cols=108  Identities=20%  Similarity=0.253  Sum_probs=83.2

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~~i~  192 (304)
                      +|.|+||+|.|||++|+.+|+.|..+|++|+++|.+..........+.... +.++++. .||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeeccc-----cccccc
Confidence            599999999999999999999999999999999987654455556677665 5667665 699998775     346889


Q ss_pred             HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++..+.++- .+++-.+.+++.++. ..+.|.++.|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            999998873 456666666665553 45667776665

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.70  E-value=8.8e-09  Score=83.94  Aligned_cols=94  Identities=26%  Similarity=0.380  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCC-hhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~-~~~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .+.+++|.|||.|.||+.+++.|...|+ ++++++|+..+ .+.+.+++..  .++++.+.+.++|+|+.|++..   ..
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~---~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC---Cc
Confidence            5899999999999999999999999998 59999998533 3355566654  3457778889999999998743   35


Q ss_pred             cccHHHHhcC------CCCCEEEEcCC
Q 021995          190 MFDKDRIAKM------KKGVLIVNNAR  210 (304)
Q Consensus       190 ~i~~~~l~~m------k~g~ilVn~~r  210 (304)
                      +++++.++..      ++..++||.+.
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlav  124 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIAN  124 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecC
Confidence            6777766432      23457888763

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.64  E-value=1.5e-08  Score=82.99  Aligned_cols=96  Identities=23%  Similarity=0.317  Sum_probs=77.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~  192 (304)
                      -|++|+|+|||||+-|++-|..|+..|++|++--|... +.+.+++.|.+.. +.+|+.+.+|+|.+.+|...+ ..+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD~~q-~~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecchHHH-HHHHH
Confidence            47899999999999999999999999999887766543 3456667788765 899999999999999994332 34555


Q ss_pred             HHHHhcCCCCCEEEEcCCCc
Q 021995          193 KDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       193 ~~~l~~mk~g~ilVn~~rg~  212 (304)
                      ++..+.||+|..+. .+.|-
T Consensus        91 ~~I~p~lk~g~~L~-FaHGf  109 (182)
T d1np3a2          91 EEIEPNLKKGATLA-FAHGF  109 (182)
T ss_dssp             HHTGGGCCTTCEEE-ESCCH
T ss_pred             HhhhhhcCCCcEEE-Eeccc
Confidence            67889999999886 44554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=6.5e-08  Score=78.89  Aligned_cols=91  Identities=24%  Similarity=0.214  Sum_probs=71.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------CC-HHhhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------ED-LDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------~~-l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|.+|.|+|.|.+|...++.++.+|++|+++++++.+.+.++++|+..+      .+ .+......|+++.++.....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~--  104 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD--  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence            6889999999999999999999999999999999888889999886421      11 23455678999888764321  


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                       ..-...++.++++..++.++
T Consensus       105 -~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         105 -IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CCTTTGGGGEEEEEEEEECC
T ss_pred             -chHHHHHHHhhccceEEEec
Confidence             11135678889999999987

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.5e-07  Score=78.72  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=77.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------------------------cCceecCCHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------------------------TGAKFEEDLD  168 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------------------------~g~~~~~~l~  168 (304)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...+.+.+                             ..+....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            69999999999999999999999999999997632221110                             0123456888


Q ss_pred             hhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       169 ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      +.+++||+|+=++|-+.+.+.-+-++.-+.++++++|...+.+-.  ...|.+.+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~--i~~la~~~  137 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ--ITSIANAT  137 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC--HHHHHTTS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccc--cchhhhhc
Confidence            899999999999998877776666666677899998876655443  44455544

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.48  E-value=1.8e-07  Score=79.00  Aligned_cols=93  Identities=15%  Similarity=0.179  Sum_probs=71.6

Q ss_pred             ccCC-CEEEEEeeChhhHHHHHHhcc------CCCeEE-EEcCCCCChhHHHhcCcee----cCCHHhhcCcCCEEEEcC
Q 021995          114 DLEG-KTVGTVGCGRIGKLLLQRLKP------FNCNLL-YHDRVKMDPQLEKETGAKF----EEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       114 ~L~g-~~vgIIG~G~IG~~lA~~l~~------~G~~V~-~~dr~~~~~~~~~~~g~~~----~~~l~ell~~aDvVi~~~  181 (304)
                      -+.| |+|+|||||+-|++-|..|+.      .|.+|+ +..+...+.+.+++.|.+.    +.+.+|+.+++|+|.+.+
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            4678 899999999999999999998      456665 5555456667788888652    236889999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEc
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      |...+. .+. ++..+.||+|+.+.-.
T Consensus       120 PDe~Q~-~vy-~~I~p~Lk~G~~L~Fa  144 (226)
T d1qmga2         120 SDSAQA-DNY-EKVFSHMKPNSILGLS  144 (226)
T ss_dssp             CHHHHH-HHH-HHHHHHSCTTCEEEES
T ss_pred             chHHHH-HHH-HHHHHhcCCCceeeec
Confidence            954432 344 5788999999988643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.38  E-value=1.2e-07  Score=79.19  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=66.6

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEc
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVi~~  180 (304)
                      ++-++|+|||.|.+|.++|..|...|.+|..|+|++...+...+.              .+....+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            444689999999999999999999999999999864322221111              234457899999999999999


Q ss_pred             CCCChhhhccccH---HH-HhcCCCCCEEEEcCCC
Q 021995          181 TPLTEKTRGMFDK---DR-IAKMKKGVLIVNNARG  211 (304)
Q Consensus       181 ~p~~~~t~~~i~~---~~-l~~mk~g~ilVn~~rg  211 (304)
                      +|.. ..+.++..   .. ....+++..+|+++.|
T Consensus        85 vPs~-~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          85 IPTQ-FLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             SCHH-HHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             CcHH-HHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            9932 22222211   00 0123567789999877

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.8e-07  Score=75.19  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc-------eecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-------~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      ++|+|||.|.||..+|..|...|++|.+++|+..........+.       ....+..+.+..+|+|+++++.. .+...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~-~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeeccc-chHHH
Confidence            58999999999999999999999999999997754332222111       11223446677899999999853 44443


Q ss_pred             ccHHHHhcCCCCCEEEEcCCC
Q 021995          191 FDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      + +.....+.+++.++.+..|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 4555667888989888766

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.35  E-value=1.8e-07  Score=71.40  Aligned_cols=92  Identities=13%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH--HhcCceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE--KETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~--~~~g~~~~--~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .+|+|++|+|||.|.+|..-++.|..+|++|+++++...+....  .+.++...  .--++.+..+++|+.+...     
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d-----   82 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD-----   82 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence            47999999999999999999999999999999999865332211  11122211  1123457788998877643     


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..++.+..+.+|+..++||+.
T Consensus        83 ~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHHHHHcCCEEEeC
Confidence            344677778888889999975

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.34  E-value=6.1e-07  Score=75.24  Aligned_cols=105  Identities=12%  Similarity=0.056  Sum_probs=72.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH--------------------hcCceecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~--------------------~~g~~~~~~l~ell~~aDvV  177 (304)
                      ++|+|||+|.+|..+|..|...|++|++||.+....+...                    ........++++.++.||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            5799999999999999999999999999998642211110                    00123456788989999999


Q ss_pred             EEcCCCChh---------hhcccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHH
Q 021995          178 VVNTPLTEK---------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA  222 (304)
Q Consensus       178 i~~~p~~~~---------t~~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a  222 (304)
                      ++|+|....         ....++  ...+...+++.++|..+.-.+=..+.+...
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~  136 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIP  136 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHH
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhh
Confidence            999985211         111111  134456678999999988766555555443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.22  E-value=4.4e-07  Score=75.36  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK  173 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~  173 (304)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...+...+           .+             +....++ +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            57999999999999999999999999999997543221111           01             1122233 34779


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  224 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~  224 (304)
                      ||+|+-++|-+.+.+.-+-+++-+.++++++|...+.+-.+  ..|.+.+.
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~  132 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALK  132 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCS
T ss_pred             cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhcc
Confidence            99999999988888776667777888999999877665444  44555443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.21  E-value=2.8e-06  Score=72.68  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=79.6

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhcc
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~~l~ell-~~aDvVi~~~p~~~~t~~~  190 (304)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+..... .....|.... +.++++ ..||+++-|.-     .+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~-----~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-----GAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-----SCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccc-----ccc
Confidence            469999999999999999999999999999999997653322 2234566655 455544 46999998863     467


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      |+++....++- .+++-.+...+.+.++. +.|.++.|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88888888873 46666776777766553 555555554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.20  E-value=9e-07  Score=72.90  Aligned_cols=93  Identities=18%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc---------C-------ceecCCHHhhcCcCCEEEEcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------G-------AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~---------g-------~~~~~~l~ell~~aDvVi~~~  181 (304)
                      ++|+|||.|.+|.++|..|...|.+|..|.|.... +.....         +       .....+++++++++|+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDT-EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGH-HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccH-HHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            58999999999999999999999999999874321 111111         0       123467889999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v  214 (304)
                      |.. ..+.++ ++..+.+++. .+|.++.|-..
T Consensus        80 ps~-~~~~~~-~~l~~~l~~~-~ii~~tkg~~~  109 (180)
T d1txga2          80 STD-GVLPVM-SRILPYLKDQ-YIVLISKGLID  109 (180)
T ss_dssp             CGG-GHHHHH-HHHTTTCCSC-EEEECCCSEEE
T ss_pred             chh-hhHHHH-Hhhccccccc-eecccccCccc
Confidence            943 334443 3455556654 56666676543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=7.3e-07  Score=69.42  Aligned_cols=70  Identities=17%  Similarity=0.262  Sum_probs=53.7

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhh-cCcCCEEEEcCCCChhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTM-LPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~el-l~~aDvVi~~~p~~~~t  187 (304)
                      |++.|+|+|.+|+.+|+.|...|++|+++|.++...+...+.+...       .+.|+++ +.++|.+++++|.+..+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~   78 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   78 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence            5789999999999999999999999999998765555455544322       1234444 78899999999976554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=9e-07  Score=71.78  Aligned_cols=90  Identities=17%  Similarity=0.253  Sum_probs=70.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhhc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      .|++|.|+|.|.+|...++.++.+|+++++.+++..+.+.++++|+..+   .+   .....+..|+++-++.....   
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~---  106 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  106 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh---
Confidence            5889999999999999999999999999999987777778888886422   11   12344569999998874322   


Q ss_pred             cccHHHHhcCCCCCEEEEcCC
Q 021995          190 MFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~r  210 (304)
                        -...+..++++..++.++.
T Consensus       107 --~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         107 --LDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             --HHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHHhcCCEEEEecc
Confidence              1567788999999998863

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1e-06  Score=64.60  Aligned_cols=66  Identities=21%  Similarity=0.186  Sum_probs=47.3

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh--HHHhcCce--ecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKETGAK--FEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~--~~~~~g~~--~~~~l~ell~~aDvVi~~  180 (304)
                      +++||+|+|+|+|..|.++|+.|...|++|+++|.+.....  .... +..  ....-++.+.+.|+|+++
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhh-ccceeecccchhhhccCCEEEEC
Confidence            57899999999999999999999999999999998653221  1111 221  111124556788888775

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.4e-05  Score=65.09  Aligned_cols=135  Identities=19%  Similarity=0.228  Sum_probs=88.5

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.+++||+|.|||-+. +|+.++..|...|+.|+.++...              .++.+.++++|+++.+++..    ++
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~----~~   95 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQP----EM   95 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCT----TC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhccccc----cc
Confidence            4579999999999977 89999999999999999998633              35778889999999998743    56


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+   .+|+|+++||++-..+.|....    ..+++.|   ||-.++        ..-..-.+||--+|--.=+...+
T Consensus        96 i~~~---~vk~g~iviDvgi~~~~~~~~~----~~~~~~g---dvd~~~--------v~~~a~~~TPvPGGVGp~Tva~L  157 (170)
T d1a4ia1          96 VKGE---WIKPGAIVIDCGINYVPDDKKP----NGRKVVG---DVAYDE--------AKERASFITPVPGGVGPMTVAML  157 (170)
T ss_dssp             BCGG---GSCTTCEEEECCCBC--------------CCBC---SBCHHH--------HTTTCSEECCSSSSHHHHHHHHH
T ss_pred             cccc---cccCCCeEeccCcccccccccC----CCCEEec---ccchHh--------hhhhceEeCCCCCchhHHHHHHH
Confidence            6554   4699999999986554332221    1222322   321111        11123568997666544555555


Q ss_pred             HHHHHHHHHHHH
Q 021995          271 AAGVKDMLDRYF  282 (304)
Q Consensus       271 ~~~~~~~l~~~~  282 (304)
                      .+.+++--++|+
T Consensus       158 ~~N~v~a~~r~l  169 (170)
T d1a4ia1         158 MQSTVESAKRFL  169 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            555666666665

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=6.3e-06  Score=66.83  Aligned_cols=130  Identities=17%  Similarity=0.269  Sum_probs=88.3

Q ss_pred             ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.++...              .++.+.+++||+|+.++...    ++
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p----~~   93 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKP----GF   93 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCT----TC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCc----cc
Confidence            3478999999999988 99999999999999999887532              36778889999999998732    56


Q ss_pred             ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995          191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY  270 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~  270 (304)
                      +..+   .+|+|+++||++-..+.          ++++.   -||-.++        ..-.--.+||-.+|--.=+...+
T Consensus        94 i~~~---~vk~g~vvIDvGi~~~~----------~~~~~---Gdvd~~~--------v~~~a~~~TPvPGGVGP~Tva~L  149 (166)
T d1b0aa1          94 IPGD---WIKEGAIVIDVGINRLE----------NGKVV---GDVVFED--------AAKRASYITPVPGGVGPMTVATL  149 (166)
T ss_dssp             BCTT---TSCTTCEEEECCCEECT----------TSCEE---CSBCHHH--------HHHHCSEECCSSSSSHHHHHHHH
T ss_pred             cccc---ccCCCcEEEecCceecC----------CCCEE---eccccHh--------HHhheeEeCCCCCcccHHHHHHH
Confidence            6655   46899999999854322          23322   2332111        01122478998887755555554


Q ss_pred             HHHHHHHHHHHHc
Q 021995          271 AAGVKDMLDRYFK  283 (304)
Q Consensus       271 ~~~~~~~l~~~~~  283 (304)
                      .+.+++..++|.+
T Consensus       150 ~~N~v~a~~~~~~  162 (166)
T d1b0aa1         150 IENTLQACVEYHD  162 (166)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhC
Confidence            4444444444443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.06  E-value=3.7e-05  Score=63.35  Aligned_cols=156  Identities=13%  Similarity=0.125  Sum_probs=95.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh------------------cCceecCCHHhhcCcCCEEEE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------TGAKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~------------------~g~~~~~~l~ell~~aDvVi~  179 (304)
                      ++|+|||+|.+|..+|..+. .|++|++||.++...+....                  .......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            58999999999999998775 69999999986532211110                  011222345556778999999


Q ss_pred             cCCCChhhhc-ccc-------HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCc---c
Q 021995          180 NTPLTEKTRG-MFD-------KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW---R  248 (304)
Q Consensus       180 ~~p~~~~t~~-~i~-------~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l---~  248 (304)
                      ++|....... ..+       .+.+...+++.++|--+.-.+=..+.+..-+.+.++.      +.+|-+.+.+.+   .
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9986543221 111       1223344678888888887777777787777776654      567766655544   4


Q ss_pred             CCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHH
Q 021995          249 YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF  282 (304)
Q Consensus       249 ~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~  282 (304)
                      ..|++++--+-.. +.. .......+.+.++...
T Consensus       154 ~p~riv~G~~~~~-~~~-~~~~~~~~~~l~~~~~  185 (196)
T d1dlja2         154 YPSRIIVSCEEND-SPK-VKADAEKFALLLKSAA  185 (196)
T ss_dssp             SCSCEEEECCTTS-CHH-HHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCHhh-HHH-HHHHHHHHHHHHHhhh
Confidence            5566765543322 222 2223334445555543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=3.4e-06  Score=69.04  Aligned_cols=89  Identities=17%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhh-------c--CcCCEEEEc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTM-------L--PKCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~el-------l--~~aDvVi~~  180 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+..+     .+..+.       .  ...|+|+-+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~  107 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  107 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence            58899999999999999999999998 69999998777778888876321     232221       1  237888888


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +.....     -+..++.++++..++-++
T Consensus       108 vG~~~~-----~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         108 TGDSRA-----LLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SSCTTH-----HHHHHHHEEEEEEEEECC
T ss_pred             CCchhH-----HHHHHHHhcCCCEEEEEe
Confidence            764322     145677788888887775

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.01  E-value=1.8e-06  Score=69.51  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCc--------eecCCHHhhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGA--------KFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~--------~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ++|+|.|||.|.||+.+|+.|...|++|+++||+....+...+ .+.        .....+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4789999999999999999999999999999998654443332 221        1112445678889999988885432


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .     ......++.+..+++.+.
T Consensus        81 ~-----~~~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          81 A-----TVIKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             H-----HHHHHHHHHTCEEECSSC
T ss_pred             h-----HHHHHHHhhccceeeccc
Confidence            1     112233345677777763

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.1e-05  Score=65.42  Aligned_cols=93  Identities=14%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh----cC-ceecCCHHh-hcCcCCEEEEcCCCChh
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG-AKFEEDLDT-MLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----~g-~~~~~~l~e-ll~~aDvVi~~~p~~~~  186 (304)
                      ..+.||+|.|+|.|..+++++..|...|++|.+++|+..+.+...+    .+ +... ++++ ...++|+|+.|+|....
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~-~~~~~~~~~~dliIN~Tp~G~~   92 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL-SMDELEGHEFDLIINATSSGIS   92 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC-CSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc-ccccccccccceeecccccCcc
Confidence            4689999999999999999999999999999999998644332222    11 2222 3333 34679999999997643


Q ss_pred             hhccccHHHHhcCCCCCEEEEc
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      ..  .....+..++++.+++|+
T Consensus        93 ~~--~~~~~~~~~~~~~~v~D~  112 (170)
T d1nyta1          93 GD--IPAIPSSLIHPGIYCYDM  112 (170)
T ss_dssp             TC--CCCCCGGGCCTTCEEEES
T ss_pred             cC--CCCCcHHHhccCcEEEEe
Confidence            21  111123345666666555

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.6e-06  Score=66.57  Aligned_cols=89  Identities=21%  Similarity=0.209  Sum_probs=69.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc--------CcCCEEEEcC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML--------PKCDIVVVNT  181 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell--------~~aDvVi~~~  181 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|+..+     ++..+..        ...|+++-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            57799999999999999999999999 69999998877888888886432     2333222        3589999988


Q ss_pred             CCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          182 PLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +....     -+..++.++++..++.++
T Consensus       106 G~~~~-----~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         106 GAEAS-----IQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             CCHHH-----HHHHHHHSCTTCEEEECS
T ss_pred             CCchh-----HHHHHHHhcCCCEEEEEe
Confidence            74321     256788899999999887

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.93  E-value=5.2e-06  Score=67.78  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=67.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDvVi~~~p~  183 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|+..+     +++.+    +.  ...|+++-+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            57899999999999999999999998 69999998777788888886322     22222    22  238999998874


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ...    + ++.+..++++..++-++
T Consensus       107 ~~~----~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         107 SET----L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTH----H-HHHHHHEEEEEEEEECC
T ss_pred             HHH----H-HHHHHHHhcCCEEEEEe
Confidence            322    2 56678889999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.91  E-value=1.9e-06  Score=69.45  Aligned_cols=89  Identities=20%  Similarity=0.246  Sum_probs=65.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell~~aDvVi~~~p~~~~  186 (304)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++.+.+.++++|+...     ++..    +.....|.++.+....+.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~  106 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSA  106 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccchH
Confidence            5789999999999999999999999999999998777778888886421     1222    223345666666553321


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                          + ...++.++++..++.++
T Consensus       107 ----~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         107 ----F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             ----H-HHHHTTEEEEEEEEECC
T ss_pred             ----H-HHHHHHhcCCcEEEEEE
Confidence                2 46778888888888886

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.90  E-value=8.1e-06  Score=65.78  Aligned_cols=89  Identities=17%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-------CCHHhh--------cCcCCEEEEc
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------EDLDTM--------LPKCDIVVVN  180 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~l~el--------l~~aDvVi~~  180 (304)
                      .|.+|.|+|.|.||...++.++.+|++|+++++++.+.+.++++|....       .+..+.        -..+|+++-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            5779999999999999999999999999999998877777888775321       122211        1358999888


Q ss_pred             CCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +.....     -...++.++++..++.++
T Consensus       106 ~g~~~~-----~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         106 SGNEKC-----ITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SCCHHH-----HHHHHHHSCTTCEEEECS
T ss_pred             CCChHH-----HHHHHHHHhcCCceEEEe
Confidence            763221     246678899999999887

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.86  E-value=5.1e-05  Score=65.17  Aligned_cols=108  Identities=21%  Similarity=0.345  Sum_probs=74.2

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC--------CCChhHHH----------------hcCceecCCHHh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--------KMDPQLEK----------------ETGAKFEEDLDT  169 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~--------~~~~~~~~----------------~~g~~~~~~l~e  169 (304)
                      +|.|+||.|-|+|++|+.+|+.|...|++|++++..        ....+...                ..+.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            699999999999999999999999999998866532        11111111                112233334455


Q ss_pred             hc-CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          170 ML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       170 ll-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ++ ..||+++-|..     .+.|+.+..++++- .+++=.+.+++ ..++ .+.|.++.|.
T Consensus       108 i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         108 IFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            44 47999998874     45777777777763 56777777776 4444 4777777766

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.7e-05  Score=63.59  Aligned_cols=68  Identities=19%  Similarity=0.327  Sum_probs=52.8

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      .+|||||+|.+|+. ....++.. +++++ ++|++..... ..+.+++..++++++++++.|+|++++|...
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~   73 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTAS   73 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchh
Confidence            37999999999986 56666654 77755 7788775543 4456778788899999999999999999553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.78  E-value=2.6e-05  Score=60.28  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=59.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCceec----CC---HHhh-cCcCCEEEEcCCCChhhh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~~----~~---l~el-l~~aDvVi~~~p~~~~t~  188 (304)
                      ++|.|+|+|.+|+.+++.|...|.+|++.|.++...+...+ .+....    .+   |+++ ++++|.++.+.+..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            57999999999999999999999999999987644443333 344321    12   2333 6789999888775433  


Q ss_pred             ccccHHHHhcCCCCCEEE
Q 021995          189 GMFDKDRIAKMKKGVLIV  206 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilV  206 (304)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            344445555666665553

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.77  E-value=4e-05  Score=61.99  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      .+|||||+|.||+.+++.++.. +++++ +++++....   ...+.....+.+++..+.|+|++++|.....     +-.
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~---~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~a   75 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD---TKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQ   75 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS---SSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHH
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc---cccccccchhhhhhccccceEEEeCCCcccH-----HHH
Confidence            4799999999999999999875 77755 667765322   2334455667888889999999999965332     334


Q ss_pred             HhcCCCCCEEEEcC
Q 021995          196 IAKMKKGVLIVNNA  209 (304)
Q Consensus       196 l~~mk~g~ilVn~~  209 (304)
                      .+.++.|.-+|.+.
T Consensus        76 ~~aL~aG~~vv~~~   89 (170)
T d1f06a1          76 APKFAQFACTVDTY   89 (170)
T ss_dssp             HHHHTTTSEEECCC
T ss_pred             HHHHHCCCcEEEec
Confidence            45567777666543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.8e-05  Score=64.87  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH----hcC----c----eec---CCHHhhcCcCC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK----ETG----A----KFE---EDLDTMLPKCD  175 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~----~~g----~----~~~---~~l~ell~~aD  175 (304)
                      +.++.+++|.|+|.|..|++++..|...|. ++++++|+....+...    +++    .    ...   +++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            346899999999999999999999998888 5889999876544322    111    1    011   23445678999


Q ss_pred             EEEEcCCCChhh---hccccHHHHhcCCCCCEEEEc
Q 021995          176 IVVVNTPLTEKT---RGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       176 vVi~~~p~~~~t---~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      +|+.++|.....   ..++.  -+..++++.+++|+
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di  126 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTEC  126 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEEC
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHh
Confidence            999999965331   11111  13446777766666

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=5.4e-06  Score=67.70  Aligned_cols=94  Identities=18%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-------Cc-----eecCCHHhhcCcCCEE
Q 021995          111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------GA-----KFEEDLDTMLPKCDIV  177 (304)
Q Consensus       111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-------g~-----~~~~~l~ell~~aDvV  177 (304)
                      .+.++.||++.|||-++ +|+.+|..|...|+.|+.++..... +..+..       +.     ...+.+++...++|++
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ-KFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEE-EEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccc-ccccccceeeeeeccccccccchhHHhhccccCCEE
Confidence            35689999999999887 5999999999999999988754211 000000       00     0012367778899999


Q ss_pred             EEcCCCChhhhcc-ccHHHHhcCCCCCEEEEcCCCc
Q 021995          178 VVNTPLTEKTRGM-FDKDRIAKMKKGVLIVNNARGA  212 (304)
Q Consensus       178 i~~~p~~~~t~~~-i~~~~l~~mk~g~ilVn~~rg~  212 (304)
                      +.+++..    ++ +..+   ..|+|+++||+|-..
T Consensus       102 IsavG~p----~~~i~~d---~ik~GavvIDvGi~~  130 (171)
T d1edza1         102 ITGVPSE----NYKFPTE---YIKEGAVCINFACTK  130 (171)
T ss_dssp             EECCCCT----TCCBCTT---TSCTTEEEEECSSSC
T ss_pred             EEccCCC----ccccChh---hcccCceEeeccccc
Confidence            9999843    22 3333   458999999998553

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.72  E-value=7.8e-05  Score=64.44  Aligned_cols=110  Identities=18%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE--------cCCCCChhHH-------------------HhcCceecC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLE-------------------KETGAKFEE  165 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~--------dr~~~~~~~~-------------------~~~g~~~~~  165 (304)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|+++        |++....+..                   ...+.+.. 
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  110 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-  110 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-
Confidence            3689999999999999999999999999998754        4433222211                   11122222 


Q ss_pred             CHHh-hcCcCCEEEEcCCCChhhhccccHHHHhcCC-CCC-EEEEcCCCchhchHHHHHHHHcCCce
Q 021995          166 DLDT-MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       166 ~l~e-ll~~aDvVi~~~p~~~~t~~~i~~~~l~~mk-~g~-ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.++ +-..||+++-|.     +.+.|+.+..+.++ +++ +++-.+.+++-++ +....|+++.|.
T Consensus       111 ~~~~~~~~~~DiliPcA-----~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             chhhcccccccEEeecc-----ccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            1122 335799998664     45678888777776 345 5555555655444 444445655554

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.68  E-value=0.00018  Score=61.50  Aligned_cols=110  Identities=12%  Similarity=0.127  Sum_probs=82.6

Q ss_pred             EEEEEeeCh--hhHHHHHH------hccCCCeEEEEcCCCCC---------hhH--------------------------
Q 021995          119 TVGTVGCGR--IGKLLLQR------LKPFNCNLLYHDRVKMD---------PQL--------------------------  155 (304)
Q Consensus       119 ~vgIIG~G~--IG~~lA~~------l~~~G~~V~~~dr~~~~---------~~~--------------------------  155 (304)
                      +++++|.|.  ||-.+++.      +...|..|++.|-++..         .+.                          
T Consensus        42 ~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~  121 (242)
T d2b0ja2          42 SSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHL  121 (242)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEES
T ss_pred             eeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhc
Confidence            456777765  77777763      56677787777655211         000                          


Q ss_pred             --HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          156 --EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       156 --~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                        ..+.|++..++..|+++++|+|++++|..+.+..++ +++.+.+++|++++|++..+......+.+.++...+.
T Consensus       122 ~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         122 VHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             SCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence              001245556889999999999999999777777777 6888999999999999999999999999999887776

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.61  E-value=2.5e-05  Score=62.39  Aligned_cols=89  Identities=22%  Similarity=0.266  Sum_probs=67.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CC----HHhhcCcCCEEEEcCCCChh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED----LDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~----l~ell~~aDvVi~~~p~~~~  186 (304)
                      .|++|.|+|.|.||...++.++..|++|++.++++.+.+.++++|+...     ++    +.+.....|.++.+.+. +.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS-KP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC-HH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCC-HH
Confidence            5789999999999999999999999999999988777777888886432     12    22334556777766653 22


Q ss_pred             hhccccHHHHhcCCCCCEEEEcC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +    -...+..++++..++.++
T Consensus       106 ~----~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2         106 A----FQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             H----HHHHHHHEEEEEEEEECC
T ss_pred             H----HHHHHHHhccCCceEecc
Confidence            2    257778889999999886

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=1.6e-05  Score=64.74  Aligned_cols=71  Identities=17%  Similarity=0.064  Sum_probs=50.6

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcC----ceecCCHHhhcCcCCEEEEcCCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETG----AKFEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g----~~~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      .+.|++|.|+|.|..|++++..|...+.+|++++|+..+.+.. ..++    .......+..+.++|+|+.|+|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            5789999999999999999999887778899999986433322 1211    222212223467899999999965

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=0.00074  Score=57.32  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=75.1

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhc-cCCCeEEEEc--------CCCCChhHHHh-----------cCceecCCHHhhc
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHD--------RVKMDPQLEKE-----------TGAKFEEDLDTML  171 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~d--------r~~~~~~~~~~-----------~g~~~~~~l~ell  171 (304)
                      +.++.|++|.|-|+|++|+.+|+.|. ..|++|++++        +..........           .+.+.. +.++++
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~  104 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELL  104 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHH
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-cccccc
Confidence            34689999999999999999999995 6899988654        22222221111           112222 455666


Q ss_pred             C-cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          172 P-KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       172 ~-~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      . .||+++-|.     ..+.|+.+....++- .+++-.+.+++- .++ .+.|.++.|.
T Consensus       105 ~~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~  155 (234)
T d1b26a1         105 ELDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL  155 (234)
T ss_dssp             TSCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE
Confidence            5 799998875     346889999999985 467777777764 333 4677777766

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.52  E-value=8.4e-05  Score=59.52  Aligned_cols=90  Identities=13%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCCh--hHHHhcCceec-CCHHhhc-----CcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDP--QLEKETGAKFE-EDLDTML-----PKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~--~~~~~~g~~~~-~~l~ell-----~~aDvVi~~~p~~~~  186 (304)
                      .++||||.|.||+. +.+.++.+ ..++. +.+++....  ..++++++... .++++++     .+.|+|++++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            48999999999986 56777755 44654 557765443  34566776533 3344443     468999999985433


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      ..+   +..+...+.|..+||-+.
T Consensus        85 ~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHH---HHHHHHHCTTCEEEECST
T ss_pred             HHh---HHHHHHHHcCCEEEEccc
Confidence            222   344566799999999974

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=5.1e-05  Score=61.26  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVi~~~p~  183 (304)
                      .|++|.|+|. |.+|....+.++.+|++|++.++++.+.+.++++|+..+     .++.+.+      ...|+++-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            6889999995 999999999999999999998876656677778886422     2232221      23788877664 


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       ..   . -...++.|+++..+|.++.
T Consensus       107 -~~---~-~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2         107 -NV---N-LSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             -HH---H-HHHHHHHEEEEEEEEECCC
T ss_pred             -HH---H-HHHHHhccCCCCEEEEEec
Confidence             11   1 2566788899999998863

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.49  E-value=0.00019  Score=58.13  Aligned_cols=89  Identities=15%  Similarity=0.019  Sum_probs=67.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHhh-----cCcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTM-----LPKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~-------~l~el-----l~~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|+..+.       ..+..     -...|+++-|+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            67899999999999999999999998 588889988888888998864321       11211     245899999887


Q ss_pred             CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~  209 (304)
                      ..+.     ..+.+..++++ ..++-++
T Consensus       108 ~~~~-----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         108 TAQT-----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECC
T ss_pred             cchH-----HHHHHHHhhcCCeEEEecC
Confidence            4322     25677788885 6777776

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.48  E-value=8.1e-05  Score=61.16  Aligned_cols=71  Identities=11%  Similarity=0.081  Sum_probs=49.9

Q ss_pred             ccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cCce-------ecCCHHhhcCcCCEEE
Q 021995          112 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAK-------FEEDLDTMLPKCDIVV  178 (304)
Q Consensus       112 ~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~-------~~~~l~ell~~aDvVi  178 (304)
                      +.+|+||++.|.| -|.||+.+|+.|...|++|+..+|+..+.+...+     ....       ..+++++++.+.|+|+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            5589999999999 6999999999999999999999997533222211     1110       1123455667777776


Q ss_pred             EcCC
Q 021995          179 VNTP  182 (304)
Q Consensus       179 ~~~p  182 (304)
                      .+.+
T Consensus        98 n~Ag  101 (191)
T d1luaa1          98 TAGA  101 (191)
T ss_dssp             ECCC
T ss_pred             ecCc
Confidence            6654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.44  E-value=0.0001  Score=59.92  Aligned_cols=107  Identities=19%  Similarity=0.342  Sum_probs=69.4

Q ss_pred             EEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcC----ceecCCHHhhc--CcCCEEEEcCCCChhhhc
Q 021995          119 TVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETG----AKFEEDLDTML--PKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g----~~~~~~l~ell--~~aDvVi~~~p~~~~t~~  189 (304)
                      ++||||+|.+|+..++.++.. +++|+ ++|++....+ ...+.+    ...++++++++  .+.|+|++++|.....  
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~--   80 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV--   80 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH--
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc--
Confidence            799999999999999988765 77876 5687653322 233444    24567899987  4578999999854332  


Q ss_pred             cccHHHHhcCCCCCEEEEcC--CCchhchHHHHHHHHcCCceE
Q 021995          190 MFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIAG  230 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~--rg~~vd~~aL~~aL~~g~i~g  230 (304)
                         +-....++.|.-++---  --.+-+.+.|.+..++..+.-
T Consensus        81 ---~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          81 ---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             ---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ---chhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence               22334455565443211  123345566888888777663

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.43  E-value=3.2e-05  Score=62.69  Aligned_cols=89  Identities=19%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeE-EEEcCCCCChhHHHhcCceec-----CCHHhhc----C-cCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFE-----EDLDTML----P-KCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V-~~~dr~~~~~~~~~~~g~~~~-----~~l~ell----~-~aDvVi~~~p~~  184 (304)
                      .|.+|.|+|.|.+|...++.++.+|+++ ++.++++.+.+.++++|+..+     +++.+.+    . ..|+++-|+...
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  107 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence            6889999999999999999999999875 566777666777888886322     2333322    1 379998888643


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +.     .+..++.++++..++.++
T Consensus       108 ~~-----~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         108 EI-----LKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HH-----HHHHHHTEEEEEEEEECC
T ss_pred             HH-----HHHHHhcccCceEEEEEe
Confidence            22     146678889999988886

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.4e-05  Score=63.10  Aligned_cols=68  Identities=19%  Similarity=0.130  Sum_probs=50.8

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ..|+|.|+| .|.+|+.+++.|...|++|.++.|++.+.......+++       ..++++++++++|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 69999999999999999999999876432222222322       124566789999999988754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.43  E-value=5.9e-05  Score=61.28  Aligned_cols=71  Identities=21%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hc----Cc-----eecCCHHhhcCcCCEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET----GA-----KFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~----g~-----~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+++||+|.|+|.|..+++++..|...| +|.+++|+..+.+... .+    ..     ....+++..+..+|+++.+.|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            3689999999999999999999998877 8999999864433221 11    11     123456677889999999998


Q ss_pred             CC
Q 021995          183 LT  184 (304)
Q Consensus       183 ~~  184 (304)
                      ..
T Consensus        93 ~g   94 (177)
T d1nvta1          93 IG   94 (177)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.42  E-value=0.00025  Score=57.37  Aligned_cols=90  Identities=17%  Similarity=0.071  Sum_probs=63.7

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecC-----C--HHhhc-----CcCCEEEEcC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-----D--LDTML-----PKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~-----~--l~ell-----~~aDvVi~~~  181 (304)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+.+.++++|+..+-     +  .++..     ...|+++-++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~  105 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECA  105 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcC
Confidence            368899999999999999999999997 688999988888889999875331     1  22222     3579998887


Q ss_pred             CCChhhhccccHHHHhcCCC-CCEEEEcC
Q 021995          182 PLTEKTRGMFDKDRIAKMKK-GVLIVNNA  209 (304)
Q Consensus       182 p~~~~t~~~i~~~~l~~mk~-g~ilVn~~  209 (304)
                      ...+..     .+.+..+++ +..++-++
T Consensus       106 g~~~~~-----~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2         106 GRIETM-----MNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             CCHHHH-----HHHHHTBCTTTCEEEECC
T ss_pred             CCchHH-----HHHHHHHHHhcCceEEEE
Confidence            643321     344444544 45666554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.39  E-value=0.00031  Score=56.86  Aligned_cols=89  Identities=16%  Similarity=0.051  Sum_probs=65.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec------CC-HHhh-----cCcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE------ED-LDTM-----LPKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~------~~-l~el-----l~~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+.+.++++|+..+      ++ .+++     -...|+++.++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG  108 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence            68899999999999999999999995 79999999988899999987532      11 1211     246899988886


Q ss_pred             CChhhhccccHHHHhcCC-CCCEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMK-KGVLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk-~g~ilVn~~  209 (304)
                      ..+..     .+.+..+. .+..+|.++
T Consensus       109 ~~~~~-----~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         109 HLETM-----IDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             CHHHH-----HHHHTTSCTTTCEEEECS
T ss_pred             chHHH-----HHHHHHhhcCCeEEEEEE
Confidence            43321     34445554 447888886

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.36  E-value=6.8e-05  Score=60.57  Aligned_cols=87  Identities=15%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHH------hhcCcCCEEEEcCCCChhhh
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD------TMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~------ell~~aDvVi~~~p~~~~t~  188 (304)
                      .|++|.|.|. |.+|+..++.++.+|++|++.++++.+.+.+++.|+...-+..      .....+|+|+-+...  .  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~--~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK--E--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT--T--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch--h--
Confidence            6889999995 9999999999999999999998877777788888875331221      123568999887641  1  


Q ss_pred             ccccHHHHhcCCCCCEEEEcC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~  209 (304)
                        + .+.++.++++..+|.++
T Consensus       103 --~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC-
T ss_pred             --H-HHHHHHHhcCCcEEEEe
Confidence              1 56788999999999986

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=9.7e-05  Score=59.73  Aligned_cols=89  Identities=12%  Similarity=0.159  Sum_probs=65.8

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVi~~~p~  183 (304)
                      .|++|.|.| .|.+|...++.++.+|++|++..++..+.+..++.|+...     .++.+-+      ...|+++.++..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~  104 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  104 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence            578999988 5999999999999999999988876655667777775321     2333322      458999888762


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                       +.     -.+.++.|+++..+|.++.
T Consensus       105 -~~-----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         105 -EA-----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             -HH-----HHHHHHTEEEEEEEEECSC
T ss_pred             -hH-----HHHHHHHhcCCCEEEEEcc
Confidence             21     1567788899999999864

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.31  E-value=0.0013  Score=57.43  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC----
Q 021995           74 VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV----  149 (304)
Q Consensus        74 ~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~----  149 (304)
                      ++++--++..+-.++++.....   ..         ....+|.|+||.|-|||++|+.+|+.|...|++|++++.+    
T Consensus         5 eATG~GV~~~~~~~l~~~~~~~---~~---------gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i   72 (293)
T d1hwxa1           5 SATGRGVFHGIENFIENASYMS---IL---------GMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSI   72 (293)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHH---HH---------TCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             hHhHHHHHHHHHHHHHhcccch---hc---------cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhh
Confidence            5566666666666665421100   00         0124699999999999999999999999999998866422    


Q ss_pred             ----CCChhHHHhc----C------ceecCCHHhhc-CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995          150 ----KMDPQLEKET----G------AKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  214 (304)
Q Consensus       150 ----~~~~~~~~~~----g------~~~~~~l~ell-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v  214 (304)
                          ....+...++    +      .... +.++++ ..||+++-|.     +.+.|+.+....++- .+++-.+.+++ 
T Consensus        73 ~~~~Gld~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~-  144 (293)
T d1hwxa1          73 WNPDGIDPKELEDFKLQHGTILGFPKAKI-YEGSILEVDCDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPT-  144 (293)
T ss_dssp             CCTTCCCHHHHHHHHHTTSSSTTCTTSCB-CCSCGGGCCCSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCB-
T ss_pred             ccccccchHHHHHHHHHcCCeeccccccc-CCcccccCCccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCC-
Confidence                2222222211    1      0111 122333 4799999886     346777777777764 46777777875 


Q ss_pred             chHHHHHHHHcCCce
Q 021995          215 DTQAVVDACSSGHIA  229 (304)
Q Consensus       215 d~~aL~~aL~~g~i~  229 (304)
                      ..++ .+.|.+..|.
T Consensus       145 t~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         145 TPQA-DKIFLERNIM  158 (293)
T ss_dssp             CHHH-HHHHHHTTCE
T ss_pred             Ccch-HHHHHHCCCE
Confidence            3344 3667666665

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.30  E-value=0.0005  Score=53.85  Aligned_cols=94  Identities=18%  Similarity=0.208  Sum_probs=55.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCCh-hHHHhcC--------ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDP-QLEKETG--------AKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~-~~~~~~g--------~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      ++|+|||.|.+|..+|..+...+  -++..+|.+.... ..+.++.        ........+.+++||+|+++......
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            48999999999999998886554  4799999876432 2222221        11122234668899999998543221


Q ss_pred             ---hh-ccc--cH-------HHHhcCCCCCEEEEcCCC
Q 021995          187 ---TR-GMF--DK-------DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       187 ---t~-~~i--~~-------~~l~~mk~g~ilVn~~rg  211 (304)
                         ++ .++  |.       +.+....|++++++++..
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence               11 011  11       123344688999999764

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.29  E-value=0.00013  Score=58.49  Aligned_cols=107  Identities=14%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             CEEEEEeeChhhHH-HHHHhccC-CCeEEEEcCCCCChh-HHHhcCc-eecCCHHhhcC-cCCEEEEcCCCChhhhcccc
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPF-NCNLLYHDRVKMDPQ-LEKETGA-KFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  192 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~-G~~V~~~dr~~~~~~-~~~~~g~-~~~~~l~ell~-~aDvVi~~~p~~~~t~~~i~  192 (304)
                      .+|||||+|.+|+. ....++.. ++++.++|+++...+ ..+.++. ..+.+.+++++ +.|+|++++|.....  -+-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~--~~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS--TLA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH--HHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccc--ccc
Confidence            48999999999976 56677655 678888998764333 3344554 34567788775 579999999954332  222


Q ss_pred             HHHHhcCCCCC-EEEEcC-CCchhchHHHHHHHHcCCce
Q 021995          193 KDRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       193 ~~~l~~mk~g~-ilVn~~-rg~~vd~~aL~~aL~~g~i~  229 (304)
                      ...+   +.|. +++--= --.+-+...|.++.++....
T Consensus        80 ~~al---~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFL---HLGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHH---HTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccc---ccccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            2333   3332 444321 12334556677776665544

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.29  E-value=0.0002  Score=56.56  Aligned_cols=97  Identities=13%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhc---------CceecCCHHhhcCcCCEEEEcCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET---------GAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      -.+++|+|||.|.+|..+|..+...|  -++..+|+.+...+ .+.++         .......-.+.+++||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            35789999999999999999887655  47999998643211 11111         12222233467889999998754


Q ss_pred             CCh--h-hh-ccc--cH-------HHHhcCCCCCEEEEcCCC
Q 021995          183 LTE--K-TR-GMF--DK-------DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~~--~-t~-~~i--~~-------~~l~~mk~g~ilVn~~rg  211 (304)
                      ...  . ++ .++  |.       +.+....|++++|+++..
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP  125 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP  125 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence            322  1 11 111  11       123344678899998643

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.27  E-value=0.0011  Score=52.26  Aligned_cols=95  Identities=23%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             cCCCEEEEEee---ChhhHHHHHHhccCCCeEEEEcCCC-C--ChhHHHhc--CceecCCHHhhcCcCCEEEEcCCCCh-
Q 021995          115 LEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVK-M--DPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTE-  185 (304)
Q Consensus       115 L~g~~vgIIG~---G~IG~~lA~~l~~~G~~V~~~dr~~-~--~~~~~~~~--g~~~~~~l~ell~~aDvVi~~~p~~~-  185 (304)
                      |.|++|++||=   |++.++++..+..||++++.+.+.. .  ........  .+...+++++.++++|+|...--... 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999995   5699999999999999976554432 1  12222222  34556799999999999876432111 


Q ss_pred             ----------hhhccccHHHHhcCCCCCEEEEcC
Q 021995          186 ----------KTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       186 ----------~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                                .....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      112246788888889888887664

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.27  E-value=0.00011  Score=59.32  Aligned_cols=66  Identities=21%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .+++|.|+|.|..|++++..|+..|+ +|.+++|+..+.+. ....+.....++.  ..++|+|+.|+|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence            67899999999999999999999998 69999998643332 3334554443332  3579999999985

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.25  E-value=0.0011  Score=52.86  Aligned_cols=96  Identities=13%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCC-CChh-H---HHh----cC--ceecCCHHhhcCcCCEEEEcC
Q 021995          114 DLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVK-MDPQ-L---EKE----TG--AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       114 ~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~-~~~~-~---~~~----~g--~~~~~~l~ell~~aDvVi~~~  181 (304)
                      +|.|++|++||=|+ +.++++..+..||+++.++.|.. .+.+ .   .++    .+  .....++++.++.+|+|....
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            47899999999654 77999999999999999998754 2221 1   111    11  345678999999999998753


Q ss_pred             CCCh------h------hhccccHHHHhcCCCCCEEEEcC
Q 021995          182 PLTE------K------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       182 p~~~------~------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      =...      +      ....++.+.++.+|++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            2111      0      12356888999999999987764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.24  E-value=0.001  Score=56.58  Aligned_cols=107  Identities=18%  Similarity=0.248  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhc-cCCCeEEEEc-CCC-------CChhHHH----hc-------CceecCCHHhh-cC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHD-RVK-------MDPQLEK----ET-------GAKFEEDLDTM-LP  172 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~d-r~~-------~~~~~~~----~~-------g~~~~~~l~el-l~  172 (304)
                      .|.|+||.|-|+|++|..+|+.|. .+|++|++.. .+.       ...+...    +.       +.... +.+++ -.
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~  107 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLEL  107 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccc
Confidence            599999999999999999999985 6899987654 321       1111111    11       22333 34444 35


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      .||+++-|.-     .+.|+.+..+.++- .+++-.+.+++-. ++ .+.|.++.|.
T Consensus       108 ~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         108 EVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             CCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             cccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            7999998874     46777777777754 5667777777643 33 4566666555

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.24  E-value=0.00025  Score=55.98  Aligned_cols=93  Identities=15%  Similarity=0.208  Sum_probs=56.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHh-------cCc--e-ecCCHHhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------TGA--K-FEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~-------~g~--~-~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      |+|+|||.|.+|..+|..|...|  -++..+|.+....+ ...+       ...  . ...+ .+.+++||+|+++....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d-~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND-WAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC-GGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC-HHHhccccEEEEecccc
Confidence            79999999999999999887555  47999998653211 1111       111  1 1223 35679999999986532


Q ss_pred             h-------hhh--------cccc--HHHHhcCCCCCEEEEcCCC
Q 021995          185 E-------KTR--------GMFD--KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~-------~t~--------~~i~--~~~l~~mk~g~ilVn~~rg  211 (304)
                      .       .++        .++.  .+.+....|++++|+++..
T Consensus        81 ~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             ccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            1       011        1110  1123445788999999754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.23  E-value=7.2e-05  Score=60.30  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec----CC-HHhhc-----CcCCEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----ED-LDTML-----PKCDIVVVNTPLT  184 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~----~~-l~ell-----~~aDvVi~~~p~~  184 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.+++.|...+    ++ .++..     ...|+++.++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            47899999999999999999998886 57788887766777777776422    11 22222     2478998888743


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ...     ...+..++++..++.++
T Consensus       112 ~~~-----~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         112 ATV-----DYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HHH-----HHGGGGEEEEEEEEECC
T ss_pred             hHH-----HHHHHHHhCCCEEEEEe
Confidence            221     45677889999999886

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.23  E-value=5e-05  Score=60.99  Aligned_cols=89  Identities=19%  Similarity=0.158  Sum_probs=64.4

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH-Hhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL-DTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l-~ell-----~~aDvVi~~~p  182 (304)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++.+.+.++++|+...     .++ +++.     ...|+++-|..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            5789999995 9999999999998885 78999988777777788875321     122 2222     24788888776


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..+..     +..+..++++..++.++
T Consensus       107 ~~~~~-----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 SEKTL-----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CHHHH-----TTGGGGEEEEEEEEECC
T ss_pred             cchHH-----HhhhhhcccCCEEEEec
Confidence            33221     34567789999998886

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.23  E-value=0.00021  Score=64.13  Aligned_cols=90  Identities=10%  Similarity=0.167  Sum_probs=65.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHH-Hh----cCc--eecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          117 GKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLE-KE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~-~~----~g~--~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      -++++|||.|..++.-++.+. -++. +|.+|+|++.+.+.+ ++    .|.  ..+++++++++.||+|+++++. +.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CCC
Confidence            469999999999998888664 5665 499999986443322 22    233  4578999999999999988863 333


Q ss_pred             hccccHHHHhcCCCCCEEEEcCC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      .-+++.+   .+|+|+.+..+|.
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSC
T ss_pred             Ccccchh---hcCCCCEEeeccc
Confidence            4566543   5799999988875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00025  Score=53.39  Aligned_cols=40  Identities=20%  Similarity=0.300  Sum_probs=35.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP  153 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~  153 (304)
                      ...+.||||+|-|-.|+.++..++.+|+++.++|+++..+
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            3466789999999999999999999999999999977543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.20  E-value=0.00026  Score=63.00  Aligned_cols=89  Identities=18%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             CCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHH----HhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE----KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~----~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      -++++|||.|..++..++.+.. +.. +|.+|+|++...+.+    ...+.....+.++.+.+||+|++++|.++   -+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~---P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK---PV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS---CC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc---cc
Confidence            4589999999999999988763 555 599999976443322    23344444567788899999999988543   45


Q ss_pred             ccHHHHhcCCCCCEEEEcCCC
Q 021995          191 FDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg  211 (304)
                      +..+   .+++|+.+..+|.-
T Consensus       202 ~~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         202 VKAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             BCGG---GCCTTCEEEECSCC
T ss_pred             cchh---hcCCCCeEeecCCc
Confidence            5543   57999999999853

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.20  E-value=0.00017  Score=56.06  Aligned_cols=89  Identities=19%  Similarity=0.186  Sum_probs=65.0

Q ss_pred             ccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCC-------ChhHHH----hcCceecCCHHhhcC
Q 021995          114 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKM-------DPQLEK----ETGAKFEEDLDTMLP  172 (304)
Q Consensus       114 ~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~-------~~~~~~----~~g~~~~~~l~ell~  172 (304)
                      .+.+++|+|+|+          ++-...+++.|...|++|.+|||.-.       ..+...    ..+...++++++++.
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            467899999997          56788899999999999999997311       111111    112334679999999


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEc
Q 021995          173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      .+|+|+++++..+ .     .+....++++.+++|+
T Consensus        90 ~~D~ivi~t~h~~-f-----~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDEL-F-----VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCGG-G-----HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCHH-H-----HHHHHHhcCCCEEEEC
Confidence            9999999998542 1     3456667788899987

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00026  Score=55.64  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      .+|.||+|.|||.|.+|..-++.|..+|++|+++++.
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4699999999999999999999999999999999764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00058  Score=53.30  Aligned_cols=94  Identities=19%  Similarity=0.240  Sum_probs=56.9

Q ss_pred             CEEEEEeeChhhHHHHHHhcc--CCCeEEEEcCCCCChh-HHHh------c--CceecCCHHhhcCcCCEEEEcCCC--C
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQ-LEKE------T--GAKFEEDLDTMLPKCDIVVVNTPL--T  184 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~--~G~~V~~~dr~~~~~~-~~~~------~--g~~~~~~l~ell~~aDvVi~~~p~--~  184 (304)
                      ++|+|||.|.+|..+|..+..  ..-++..+|.+....+ .+.+      +  ......+..+.+++||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            489999999999999987764  4468999998642221 1111      0  111122334568999999998632  2


Q ss_pred             hh-hh-ccc--cH-------HHHhcCCCCCEEEEcCCC
Q 021995          185 EK-TR-GMF--DK-------DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~-t~-~~i--~~-------~~l~~mk~g~ilVn~~rg  211 (304)
                      +. ++ .++  |.       +.+....|++++++++..
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            21 11 111  11       233445789999998754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.15  E-value=9e-05  Score=59.25  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             CEEEEE-eeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          118 KTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       118 ~~vgII-G~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      +||+|| |.|.||+.+|+.|...|++|.+++|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999 8999999999999999999999999764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.06  E-value=0.00043  Score=54.99  Aligned_cols=96  Identities=22%  Similarity=0.246  Sum_probs=60.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHh-------cC----ceecCCHHhhcCcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------TG----AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~-------~g----~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      +-++|+|||.|.+|+.+|..+...+. +++.+|.+....+. +.+       .+    .....+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            45799999999999999988776564 79999986542221 111       11    1223456788999999999874


Q ss_pred             CC--h------hhhcc-c--c----HH---HHhcCCCCCEEEEcCCC
Q 021995          183 LT--E------KTRGM-F--D----KD---RIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~--~------~t~~~-i--~----~~---~l~~mk~g~ilVn~~rg  211 (304)
                      ..  +      .++.- +  |    ++   .+....+++++++++..
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            21  1      12211 1  1    11   23344688999998754

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.03  E-value=0.00051  Score=54.09  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=56.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhc-------C--ceecCCHHhhcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-------G--AKFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~-------g--~~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      ..++|+|||.|.+|..+|..|...|  -++..+|++....+ .+.++       +  .....+.+ .+++||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence            4569999999999999999887655  58999998652211 11111       1  11223454 46899999998643


Q ss_pred             C--h-hhhc--------ccc--HHHHhcCCCCCEEEEcCC
Q 021995          184 T--E-KTRG--------MFD--KDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 ~--~-~t~~--------~i~--~~~l~~mk~g~ilVn~~r  210 (304)
                      .  + .++.        ++.  .+.+..-.+.+++++++.
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            2  1 1111        110  112344567889999874

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.99  E-value=0.0013  Score=51.23  Aligned_cols=93  Identities=16%  Similarity=0.238  Sum_probs=55.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHhc---------C--ceecCCHHhhcCcCCEEEEcCCC-
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKET---------G--AKFEEDLDTMLPKCDIVVVNTPL-  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~~---------g--~~~~~~l~ell~~aDvVi~~~p~-  183 (304)
                      ++|+|||.|.+|..+|-.+...+. ++..+|......+. +.++         .  +....+.+ .++++|+|+++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence            589999999999999988865554 89999986643221 1111         1  12233444 46899999998743 


Q ss_pred             -Chh-hh-ccc--cH----H---HHhcCCCCCEEEEcCCC
Q 021995          184 -TEK-TR-GMF--DK----D---RIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 -~~~-t~-~~i--~~----~---~l~~mk~g~ilVn~~rg  211 (304)
                       .+. ++ .++  |.    +   .+....|+++++.++..
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP  120 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP  120 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc
Confidence             221 11 111  11    2   22334678889887643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.93  E-value=0.0013  Score=52.43  Aligned_cols=87  Identities=17%  Similarity=0.122  Sum_probs=61.3

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++.+.+.++++|+..+       ++..+.+     ..+|+++-++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            688999999999999999999999975 7778887777788888886432       1222222     45899988876


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEE
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVN  207 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn  207 (304)
                      ....     .+..+..+++|..++.
T Consensus       108 ~~~~-----~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2         108 NVKV-----MRAALEACHKGWGVSV  127 (176)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEE
T ss_pred             CHHH-----HHHHHHhhcCCceeEE
Confidence            3321     2455666777654443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00049  Score=55.68  Aligned_cols=107  Identities=20%  Similarity=0.327  Sum_probs=64.0

Q ss_pred             CEEEEEeeChhhHH-HHHHhccCC--CeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKL-LLQRLKPFN--CNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~-lA~~l~~~G--~~V~-~~dr~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVi~~~p~~~~t~~  189 (304)
                      .+|||||+|.+|+. .+..++..+  +++. ++|+++...+ ..+.++. ..+.+++++++  +.|+|++++|....  .
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h--~   81 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN--L   81 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH--H
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc--c
Confidence            47999999999987 477776643  5655 6788654333 2344554 35679999885  47899999985433  2


Q ss_pred             cccHHHHhcCCCC-CEEEEcC-CCchhchHHHHHHHHcCCce
Q 021995          190 MFDKDRIAKMKKG-VLIVNNA-RGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       190 ~i~~~~l~~mk~g-~ilVn~~-rg~~vd~~aL~~aL~~g~i~  229 (304)
                      -+-...   ++.| .+++.-= --.+-+...|.+..++....
T Consensus        82 ~~~~~a---l~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          82 PFIEKA---LRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HHHHHH---HHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             cccccc---cccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            222233   3334 3333221 12334555577766665544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.91  E-value=0.0012  Score=51.70  Aligned_cols=93  Identities=25%  Similarity=0.289  Sum_probs=58.6

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcC----------ceecCCHHhhcCcCCEEEEcCC--
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETG----------AKFEEDLDTMLPKCDIVVVNTP--  182 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g----------~~~~~~l~ell~~aDvVi~~~p--  182 (304)
                      .+|+|||. |.+|+.+|..+...|.  ++..+|.+.. ...+.++.          .....+..+.++.||+|+++..  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~-~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc-chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            48999995 9999999999987665  5889998542 22222221          0112455688999999998854  


Q ss_pred             CCh-hhhc-cc--c----HH---HHhcCCCCCEEEEcCCC
Q 021995          183 LTE-KTRG-MF--D----KD---RIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~~-~t~~-~i--~----~~---~l~~mk~g~ilVn~~rg  211 (304)
                      ..+ .++. ++  |    ++   .+....++++++.++..
T Consensus        80 ~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP  119 (144)
T d1mlda1          80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP  119 (144)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            222 1111 11  1    11   22333788999999754

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.90  E-value=0.0014  Score=53.13  Aligned_cols=66  Identities=21%  Similarity=0.287  Sum_probs=43.5

Q ss_pred             EEEEEeeChhhHHHHHHhccC-CCeEEEEc-CCCCChhH-HHh-----------------cCceecCCHHhhcCcCCEEE
Q 021995          119 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHD-RVKMDPQL-EKE-----------------TGAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~-G~~V~~~d-r~~~~~~~-~~~-----------------~g~~~~~~l~ell~~aDvVi  178 (304)
                      +|||.|||+||+.+++.+... +++|++++ +.+..... ...                 .+.....++.++..++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999998754 67877664 43321111 011                 11222235667777899999


Q ss_pred             EcCCCC
Q 021995          179 VNTPLT  184 (304)
Q Consensus       179 ~~~p~~  184 (304)
                      -|.|..
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            998854

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.0022  Score=50.82  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             cCCCEEEEEee--ChhhHHHHHHhccCCCeEEEEcCCC-CChh--------HHHhcC--ceecCCHHhhcCcCCEEEEcC
Q 021995          115 LEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVK-MDPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~--G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~--------~~~~~g--~~~~~~l~ell~~aDvVi~~~  181 (304)
                      |.|++|++||=  .++.++++..+..||+++..+.|.. .+..        .+.+.+  +...+++++.++.+|+|....
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            68999999994  4799999999999999999998753 2211        112222  345679999999999998765


Q ss_pred             CCChh-------------hhccccHHHHhcCCCCCEEEEcC
Q 021995          182 PLTEK-------------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       182 p~~~~-------------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      -....             .....+......+|++++|..+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            32210             11123334444577888887765

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.86  E-value=0.00054  Score=57.47  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=47.7

Q ss_pred             CCEEEEEeeChhhHH-HHHHhccC-CCeEE-EEcCCCCChh-HHHhcCc-----eecCCHHhhcC--cCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-----KFEEDLDTMLP--KCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~-lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g~-----~~~~~l~ell~--~aDvVi~~~p~~  184 (304)
                      --+|||||+|.+|+. ++..++.. +++|+ ++|+++...+ ..+++++     ..+.+++++++  +.|+|++++|..
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            348999999999974 56666654 77866 7788764333 3344444     23578899886  478999999854

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0044  Score=49.40  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCC-h-h-------HHHhcC--ceecCCHHhhcCcCCEEEEcC
Q 021995          114 DLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMD-P-Q-------LEKETG--AKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       114 ~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~-~-~-------~~~~~g--~~~~~~l~ell~~aDvVi~~~  181 (304)
                      +|.|++|++||-|+ +.++++..+..+|+++.++.+.... . +       ...+.|  +...+++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            47899999999764 6677888888899999999875422 1 1       112223  345689999999999998865


Q ss_pred             CCChh------------hhccccHHHHhcCCCCCEEEEcC
Q 021995          182 PLTEK------------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       182 p~~~~------------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .....            ....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            43221            12346778888899999988775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.78  E-value=0.0009  Score=48.79  Aligned_cols=66  Identities=18%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             CCCEEEEEeeChhh-HHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcC
Q 021995          116 EGKTVGTVGCGRIG-KLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       116 ~g~~vgIIG~G~IG-~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~-~~l~ell~~aDvVi~~~  181 (304)
                      ..+++=+||.|.+| +++|+.|+..|++|.++|....+ .+...+.|+... ..-.+.+.+.|+|+..-
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence            56799999999999 55699999999999999986422 233445576432 22234567889887664

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00053  Score=48.16  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      |||||+|.|-.|+.++...+.+|++|.++|+...
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999998653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.77  E-value=0.0022  Score=50.53  Aligned_cols=95  Identities=21%  Similarity=0.275  Sum_probs=58.2

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHhc-------Cce---ecCCHHhhcCcCCEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKET-------GAK---FEEDLDTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~~-------g~~---~~~~l~ell~~aDvVi~~~p~~  184 (304)
                      ..+|+|||.|.+|+.+|..+...+. ++..||++....+ .+.++       +..   ...+..+.+++||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            3589999999999999987765553 6999998664322 11111       111   1123446778999999986532


Q ss_pred             hh---h-----h-ccc--cH----HH---HhcCCCCCEEEEcCCC
Q 021995          185 EK---T-----R-GMF--DK----DR---IAKMKKGVLIVNNARG  211 (304)
Q Consensus       185 ~~---t-----~-~~i--~~----~~---l~~mk~g~ilVn~~rg  211 (304)
                      ..   +     + .++  |.    +.   +....|++++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   1     1 111  22    22   3334689999998765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.74  E-value=0.0018  Score=51.69  Aligned_cols=82  Identities=17%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.+++.|....       +..++..     ...|+++-+..
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G  107 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence            68899999999999999999999985 78899998888888888876422       1122221     34788888776


Q ss_pred             CChhhhccccHHHHhcCCCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKG  202 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g  202 (304)
                      ....     .+..+..++++
T Consensus       108 ~~~~-----~~~a~~~~~~~  122 (176)
T d2jhfa2         108 RLDT-----MVTALSCCQEA  122 (176)
T ss_dssp             CHHH-----HHHHHHHBCTT
T ss_pred             chhH-----HHHHHHHHhcC
Confidence            4322     13455566665

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.72  E-value=0.0019  Score=48.63  Aligned_cols=100  Identities=12%  Similarity=0.187  Sum_probs=71.9

Q ss_pred             CEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995          118 KTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  193 (304)
Q Consensus       118 ~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~  193 (304)
                      |+|+|||.    |..|..+.+.|+.+|++|+.++++...     -.|...+.++.++-..-|++++++|.. .+..++. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~-----i~G~~~y~sl~~lp~~~D~vvi~vp~~-~~~~~l~-   74 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE-----IEGLKCYRSVRELPKDVDVIVFVVPPK-VGLQVAK-   74 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGSCTTCCEEEECSCHH-HHHHHHH-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc-----ccCccccccchhccccceEEEEEeCHH-HHHHHHH-
Confidence            68999995    678999999999999999999875421     246677789999988899999999942 3333432 


Q ss_pred             HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      +.. .+....+++..+    ...+++.+.+++..+.
T Consensus        75 ~~~-~~g~k~v~~~~g----~~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          75 EAV-EAGFKKLWFQPG----AESEEIRRFLEKAGVE  105 (116)
T ss_dssp             HHH-HTTCCEEEECTT----SCCHHHHHHHHHHTCE
T ss_pred             HHH-hcCCceEEeccc----hhhHHHHHHHHHcCCE
Confidence            333 344456676544    2455677777776665

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.71  E-value=0.0013  Score=50.04  Aligned_cols=82  Identities=17%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~e----ll~~aDvVi~~~p~~~~t~~  189 (304)
                      |.+-|+|+|.+|+.+++.|++  .+|.+.+.++...+.....|+...    .+.+-    -+.+|+.++++.+....+  
T Consensus         1 kHivI~G~g~~g~~l~~~L~~--~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n--   76 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRG--SEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET--   76 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCG--GGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHcC--CCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh--
Confidence            468899999999999999975  456777777665555566665322    12221    267899999988865443  


Q ss_pred             cccHHHHhcCCCCC
Q 021995          190 MFDKDRIAKMKKGV  203 (304)
Q Consensus       190 ~i~~~~l~~mk~g~  203 (304)
                      +.-....+.+.|..
T Consensus        77 ~~~~~~~r~~~~~~   90 (129)
T d2fy8a1          77 IHCILGIRKIDESV   90 (129)
T ss_dssp             HHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHCCCc
Confidence            33344555565553

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.00097  Score=53.21  Aligned_cols=66  Identities=9%  Similarity=0.123  Sum_probs=43.9

Q ss_pred             CEEEEEeeChhhHHHHHH--h---ccC-CCeEEEEcCCCCChhHHHhc---------CceecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVGCGRIGKLLLQR--L---KPF-NCNLLYHDRVKMDPQLEKET---------GAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~--l---~~~-G~~V~~~dr~~~~~~~~~~~---------g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      ++|.|||.|++|...+-.  +   ..+ +-++..+|.+..+.+...+.         ......+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            479999999998766632  1   222 45799999875433322211         12334678899999999999875


Q ss_pred             C
Q 021995          183 L  183 (304)
Q Consensus       183 ~  183 (304)
                      .
T Consensus        81 ~   81 (162)
T d1up7a1          81 P   81 (162)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.0013  Score=47.20  Aligned_cols=64  Identities=13%  Similarity=0.080  Sum_probs=46.5

Q ss_pred             CEEEEEeeChhhH-HHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcC
Q 021995          118 KTVGTVGCGRIGK-LLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       118 ~~vgIIG~G~IG~-~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~-~~l~ell~~aDvVi~~~  181 (304)
                      ++|=+||.|.+|. .+|+.|+..|++|.++|+...+ .+..++.|+... .--.+.+.++|+|+..-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            5788999999998 6799999999999999986522 233455676432 12234567899887764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.62  E-value=0.0015  Score=52.18  Aligned_cols=97  Identities=18%  Similarity=0.253  Sum_probs=60.2

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc--C-----c---eecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--G-----A---KFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~--g-----~---~~~~~l~ell~~aDvVi~~  180 (304)
                      .+...+|+|||.|.+|..+|..+...|.  ++..+|.+....+ .+.++  .     .   ....+ .+.+++||+|+++
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adiVVit   95 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKIVVVT   95 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccEEEEe
Confidence            4667899999999999999999987775  7999998642221 11111  1     0   11223 4568899999987


Q ss_pred             CCC--Ch-hhhc-cc--cHH-------HHhcCCCCCEEEEcCCC
Q 021995          181 TPL--TE-KTRG-MF--DKD-------RIAKMKKGVLIVNNARG  211 (304)
Q Consensus       181 ~p~--~~-~t~~-~i--~~~-------~l~~mk~g~ilVn~~rg  211 (304)
                      ...  .+ .++- ++  |.+       .+....+++++|+++..
T Consensus        96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             cCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            543  22 1211 11  111       22333678889988754

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.61  E-value=0.0028  Score=49.84  Aligned_cols=68  Identities=22%  Similarity=0.348  Sum_probs=52.2

Q ss_pred             cCCCEEEEEee---ChhhHHHHHHhccCCCeEEEEcCCCC-Chh----HHHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 021995          115 LEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ----LEKETG--AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       115 L~g~~vgIIG~---G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~----~~~~~g--~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      |.|++|++||=   +++.++++..+..||+++.++.|... +.+    ..++.+  +....++++.++.+|+|....-
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            78999999997   68999999999999999999987542 221    112222  3446799999999999887654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.61  E-value=0.0017  Score=50.66  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=57.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHh-------cC----ceecCCHHhhcCcCCEEEEcCC-
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------TG----AKFEEDLDTMLPKCDIVVVNTP-  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~-------~g----~~~~~~l~ell~~aDvVi~~~p-  182 (304)
                      ++|+|||.|.+|..+|..+...|  -++..+|.+....+ .+.+       ..    +....+. +.+++||+|+++.. 
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence            58999999999999999887555  46999998653221 1111       11    1222344 67899999998864 


Q ss_pred             -CChh---------hhcccc--HHHHhcCCCCCEEEEcCCC
Q 021995          183 -LTEK---------TRGMFD--KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 -~~~~---------t~~~i~--~~~l~~mk~g~ilVn~~rg  211 (304)
                       ..+.         +..++.  .+.+....+++++++++..
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence             2221         111110  1123444678999999864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.60  E-value=0.0015  Score=50.91  Aligned_cols=94  Identities=23%  Similarity=0.291  Sum_probs=58.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhHHH-hc---------Cce-ecCCHHhhcCcCCEEEEcC--C
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEK-ET---------GAK-FEEDLDTMLPKCDIVVVNT--P  182 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~-~~---------g~~-~~~~l~ell~~aDvVi~~~--p  182 (304)
                      ++|+|||.|.+|..+|..+...|  -++..+|.+....+... +.         ... ...+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            48999999999999999887666  48999998764322111 10         111 1124456789999999985  3


Q ss_pred             CChh-hhc--------ccc--HHHHhcCCCCCEEEEcCCC
Q 021995          183 LTEK-TRG--------MFD--KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~~~-t~~--------~i~--~~~l~~mk~g~ilVn~~rg  211 (304)
                      ..+. ++.        ++.  .+.+....|++++++++..
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            3331 111        110  0123334588899998754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.60  E-value=0.00087  Score=54.11  Aligned_cols=90  Identities=18%  Similarity=0.077  Sum_probs=67.7

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CC-HHhh-----cCcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED-LDTM-----LPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~-l~el-----l~~aDvVi~~~p~  183 (304)
                      .|++|.|.|. |.+|+..++.++..|++|++..+++++.+..++.|+...     ++ .++.     -...|+|+-++..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~  108 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  108 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecCc
Confidence            5889999998 679999999999999999999887766677777775321     11 2222     2458999988862


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg  211 (304)
                        ++    -.+.++.++++..++.++..
T Consensus       109 --~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         109 --EF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             --HH----HHHHGGGEEEEEEEEECCCG
T ss_pred             --hh----hhhhhhhccCCCeEEeecce
Confidence              21    25778899999999999754

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.59  E-value=0.0057  Score=49.61  Aligned_cols=96  Identities=13%  Similarity=0.079  Sum_probs=66.6

Q ss_pred             ccCCCEEEEEee--ChhhHHHHHHhccCCCeEEEEcCCC-CCh-hH-------HHhcC--ceecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVK-MDP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~--G~IG~~lA~~l~~~G~~V~~~dr~~-~~~-~~-------~~~~g--~~~~~~l~ell~~aDvVi~~  180 (304)
                      .|.|.+|++||=  -++.++++..+..||+++.++.|.. ... +.       ....|  .....++++.++++|+|...
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            478999999995  4899999999999999999999853 121 11       11223  34567899999999999775


Q ss_pred             CCCCh----h----------hhccccHHHHhcCCCCCEEEEcC
Q 021995          181 TPLTE----K----------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       181 ~p~~~----~----------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .-...    .          ...+..+.....++++++|..+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            43111    0          11223344556678999998876

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.003  Score=49.37  Aligned_cols=94  Identities=24%  Similarity=0.296  Sum_probs=56.7

Q ss_pred             CEEEEEee-ChhhHHHHHHhc---cCCCeEEEEcCCCCChhHHHhc--C-----ce--ecCCHHhhcCcCCEEEEcCC--
Q 021995          118 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDPQLEKET--G-----AK--FEEDLDTMLPKCDIVVVNTP--  182 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~---~~G~~V~~~dr~~~~~~~~~~~--g-----~~--~~~~l~ell~~aDvVi~~~p--  182 (304)
                      ++|+|||. |.+|+.+|..|.   .++.++..+|..+.....+.++  .     ..  ..++..+.+++||+|+++.-  
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            48999995 999999998763   4567899999754322222221  1     00  11233456889999999863  


Q ss_pred             CChh-hh-ccc--cH-------HHHhcCCCCCEEEEcCCC
Q 021995          183 LTEK-TR-GMF--DK-------DRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 ~~~~-t~-~~i--~~-------~~l~~mk~g~ilVn~~rg  211 (304)
                      ..+. ++ .++  |.       +.+....|++++|.++..
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence            2221 11 111  11       223344688999999754

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.55  E-value=0.0021  Score=54.87  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|+||++.|.| .+.||+++|+.|...|++|++.+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999 57799999999999999999999864

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.0044  Score=47.82  Aligned_cols=104  Identities=15%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             CCCEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          116 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       116 ~g~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      .-++|+|||.    +..|..+.+.|+.+|+++..+.+++...+   -.|...+.++.++-..-|++++++|. +.+..++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---i~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v   87 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL   87 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---eeceecccchhhccCCCceEEEeccH-HHHHHHH
Confidence            4579999997    78999999999999999999987542221   23566677899988889999999983 3344444


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                      . +.. .+....+++..|   .. ++++.+..++..+.
T Consensus        88 ~-~~~-~~g~k~i~~q~G---~~-~~e~~~~a~~~Gi~  119 (136)
T d1iuka_          88 P-EVL-ALRPGLVWLQSG---IR-HPEFEKALKEAGIP  119 (136)
T ss_dssp             H-HHH-HHCCSCEEECTT---CC-CHHHHHHHHHTTCC
T ss_pred             H-HHH-hhCCCeEEEecC---cc-CHHHHHHHHHcCCE
Confidence            3 333 345667887665   23 44555655555554

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.52  E-value=0.0014  Score=53.06  Aligned_cols=90  Identities=16%  Similarity=0.084  Sum_probs=68.3

Q ss_pred             ccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C-CHHhh-----cCcCCEEEEcCCC
Q 021995          114 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E-DLDTM-----LPKCDIVVVNTPL  183 (304)
Q Consensus       114 ~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~-~l~el-----l~~aDvVi~~~p~  183 (304)
                      ...|.+|.|.| .|.+|....+.++..|++|++..+++.+.+..++.|+..+   + ..++.     -...|+|+-++..
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg  108 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG  108 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc
Confidence            34688999999 5999999999999999999999988888888888886432   1 11222     1357888877753


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .      .-.+.+..|+++..+|.++
T Consensus       109 ~------~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         109 R------TLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             T------THHHHHHTEEEEEEEEECS
T ss_pred             h------hHHHHHHHhCCCceEEEee
Confidence            2      2367889999999999987

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0009  Score=53.58  Aligned_cols=88  Identities=19%  Similarity=0.145  Sum_probs=57.8

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVi~~~p~  183 (304)
                      .|++|.|.|. |.+|..+++.++.+|++|++.+++..+.+..+++|+..+     +++.+-+      ...|+|+-++..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~  107 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGR  107 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCG
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCccH
Confidence            5789999965 559999999999999999999988766677777775321     2232211      235666665531


Q ss_pred             ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                       + +    -...+..++++..++..+
T Consensus       108 -~-~----~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2         108 -D-T----WERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             -G-G----HHHHHHTEEEEEEEEECC
T ss_pred             -H-H----HHHHHHHHhcCCeeeecc
Confidence             1 1    145566666666666554

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.003  Score=50.70  Aligned_cols=66  Identities=18%  Similarity=0.182  Sum_probs=44.2

Q ss_pred             CCEEEEEeeChhhHHHHH---Hhc--cC-CCeEEEEcCCCCChhHH--------HhcC----ceecCCHHhhcCcCCEEE
Q 021995          117 GKTVGTVGCGRIGKLLLQ---RLK--PF-NCNLLYHDRVKMDPQLE--------KETG----AKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~---~l~--~~-G~~V~~~dr~~~~~~~~--------~~~g----~~~~~~l~ell~~aDvVi  178 (304)
                      +.+|+|||.|++|...+-   .++  .+ +.++..+|.++...+..        ...+    +....++++.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            469999999999976432   332  33 45899999975332211        1111    234568999999999999


Q ss_pred             EcCC
Q 021995          179 VNTP  182 (304)
Q Consensus       179 ~~~p  182 (304)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.39  E-value=0.0015  Score=53.54  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p~  183 (304)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|...+     .++.    ++.  ...|+++-++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            58899999999999999999998887 68899998777788888886432     2222    222  247999887752


Q ss_pred             Ch--hhhc--------cccHHHHhcCCCCCEEEEcC
Q 021995          184 TE--KTRG--------MFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~--~t~~--------~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..  ....        ..-+..+..++++..++-++
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         105 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             cccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            11  0000        01145666778888888776

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0017  Score=55.14  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|.||++.|-|.+. ||+++|+.|...|++|+.++|+.
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999755 99999999999999999999965

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.36  E-value=0.0014  Score=52.45  Aligned_cols=90  Identities=13%  Similarity=0.071  Sum_probs=68.5

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh---------cCcCCEEEEcCCCC
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---------LPKCDIVVVNTPLT  184 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~el---------l~~aDvVi~~~p~~  184 (304)
                      ..|.+|.|-| .|.+|....+.++.+|++|++..++..+.+..+++|+..+-+.++.         -...|+|+-++-..
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg~  101 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK  101 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcHH
Confidence            4567899998 5999999999999999999999998888888888887543233321         13477777776421


Q ss_pred             hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          185 EKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       185 ~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                            .-.+.+..++++..+|.++.
T Consensus       102 ------~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         102 ------QLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             ------HHHHHHTTEEEEEEEEECCC
T ss_pred             ------HHHHHHHHhccCceEEEeec
Confidence                  12578888999999998873

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.35  E-value=0.0037  Score=50.29  Aligned_cols=67  Identities=22%  Similarity=0.300  Sum_probs=41.8

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEEEEc-CCCCCh-hHHHhcCc------------------eecCCHHhhcCcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHD-RVKMDP-QLEKETGA------------------KFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~d-r~~~~~-~~~~~~g~------------------~~~~~l~ell~~aDv  176 (304)
                      ++|||-|||+||+.+.+.+... ..+|++.+ +++... .....++.                  ....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            4899999999999999988654 47776554 433211 11112121                  111234556678888


Q ss_pred             EEEcCCCC
Q 021995          177 VVVNTPLT  184 (304)
Q Consensus       177 Vi~~~p~~  184 (304)
                      |+-|.|.-
T Consensus        82 ViEcTG~f   89 (171)
T d1cf2o1          82 VIDCTPEG   89 (171)
T ss_dssp             EEECCSTT
T ss_pred             EEEccCCC
Confidence            88888754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.31  E-value=0.0018  Score=50.60  Aligned_cols=92  Identities=14%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHH--hcC--------ceecCCHHhhcCcCCEEEEcCCC-
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEK--ETG--------AKFEEDLDTMLPKCDIVVVNTPL-  183 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~--~~g--------~~~~~~l~ell~~aDvVi~~~p~-  183 (304)
                      .+|+|||.|.+|..+|..+...|  -++..+|.++...+ .+.  ++.        +....+. +.+++||+|+++.-. 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            48999999999999998876555  47999998653221 111  111        1122344 458899999998642 


Q ss_pred             -Ch-hhhc-cc--cH-------HHHhcCCCCCEEEEcCC
Q 021995          184 -TE-KTRG-MF--DK-------DRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       184 -~~-~t~~-~i--~~-------~~l~~mk~g~ilVn~~r  210 (304)
                       .+ .++. ++  |.       ..+....++++++.++.
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  119 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN  119 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence             22 1111 11  11       12334467888888873

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.27  E-value=0.011  Score=45.71  Aligned_cols=102  Identities=13%  Similarity=0.106  Sum_probs=70.7

Q ss_pred             CCCEEEEEee----ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          116 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       116 ~g~~vgIIG~----G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      .-++|+|||.    |..|..+++.|+.+|++|+.+++...     .-.|...+.++.++-..-|++++++|.. .+..++
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~-----~i~G~~~~~sl~dlp~~iD~v~i~vp~~-~~~~~~   91 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE-----EVLGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYV   91 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS-----EETTEECBSSGGGCSSCCSEEEECSCHH-HHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc-----ccCCCcccccccccCccceEEEEEeCHH-HHHHHH
Confidence            4679999996    67999999999999999999998542     1236667789999988999999999842 233333


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~  229 (304)
                       ++.. .+....+++..+-   .+ +.+.+.+++..+.
T Consensus        92 -~e~~-~~g~k~v~~~~G~---~~-ee~~~~a~~~gi~  123 (139)
T d2d59a1          92 -EQAI-KKGAKVVWFQYNT---YN-REASKKADEAGLI  123 (139)
T ss_dssp             -HHHH-HHTCSEEEECTTC---CC-HHHHHHHHHTTCE
T ss_pred             -HHHH-HhCCCEEEEeccc---cC-HHHHHHHHHCCCE
Confidence             3333 2455567776652   23 3445555555554

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0021  Score=51.11  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=58.7

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc-------Cc---eecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET-------GA---KFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~-------g~---~~~~~l~ell~~aDvVi~~  180 (304)
                      .+...+|+|||.|.+|..+|..|...|.  ++..+|.+....+ .+.++       +.   ....+. +.+.+||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            4556799999999999999998877665  7999998642211 11111       11   122344 456899999987


Q ss_pred             CCC--Ch-hhhc-cc--cHHH-------HhcCCCCCEEEEcCC
Q 021995          181 TPL--TE-KTRG-MF--DKDR-------IAKMKKGVLIVNNAR  210 (304)
Q Consensus       181 ~p~--~~-~t~~-~i--~~~~-------l~~mk~g~ilVn~~r  210 (304)
                      ...  .+ .++. ++  |.+.       +....+++++++++.
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            532  22 1111 11  1222       223467888998875

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=96.25  E-value=0.0023  Score=50.43  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=49.4

Q ss_pred             CCCEEEEEee---ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC
Q 021995          116 EGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       116 ~g~~vgIIG~---G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~  181 (304)
                      .|.+|++||=   ++++++++..+..||+++.+..|..-.++   +.......++++.++.+|+|....
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeE
Confidence            5889999995   68999999999999999998887542221   223445578999999999987653

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.21  E-value=0.0061  Score=48.93  Aligned_cols=67  Identities=28%  Similarity=0.292  Sum_probs=42.7

Q ss_pred             CEEEEEeeChhhHHHHHHhcc-CCCeEEEE-cCCCCCh-hHHHhcCc------------------eecCCHHhhcCcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDP-QLEKETGA------------------KFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~-dr~~~~~-~~~~~~g~------------------~~~~~l~ell~~aDv  176 (304)
                      .+|||.|||+||+.+.+.+.. -.++|+.+ |+++... ..+...+.                  ....++.++..++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            489999999999999998864 35776655 4433211 11222221                  112356667778888


Q ss_pred             EEEcCCCC
Q 021995          177 VVVNTPLT  184 (304)
Q Consensus       177 Vi~~~p~~  184 (304)
                      |+-|.|.-
T Consensus        83 ViEcTG~f   90 (172)
T d2czca2          83 IVDATPGG   90 (172)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCCC
Confidence            88888743

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.08  E-value=0.0082  Score=45.82  Aligned_cols=108  Identities=15%  Similarity=0.257  Sum_probs=69.9

Q ss_pred             cCCCEEEEEee----ChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          115 LEGKTVGTVGC----GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       115 L~g~~vgIIG~----G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      +.-++|+|||.    |..|..+.+.|+..| .+|+.++++...     -.|...+.++.|+-..-|++++++|. +.+..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-----i~G~~~y~sl~dlp~~vDlvvi~vp~-~~~~~   79 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----VQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKD   79 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----ETTEECBSSTTSCSSCCSEEEECSCH-HHHHH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-----cCCeEeecchhhcCCCCceEEEecCh-HHhHH
Confidence            46689999996    889999999998765 689999985421     24677788999998899999999994 33434


Q ss_pred             cccHHHHhcCCCCCEEEEcCCCc-----hhchHHHHHHHHcCCce
Q 021995          190 MFDKDRIAKMKKGVLIVNNARGA-----IMDTQAVVDACSSGHIA  229 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~rg~-----~vd~~aL~~aL~~g~i~  229 (304)
                      ++ ++..+.=-+..+++..+-++     ...+++|.+..++..+.
T Consensus        80 ~~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          80 TL-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HH-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HH-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            44 23332222233333322222     23344566666655444

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.035  Score=46.17  Aligned_cols=127  Identities=18%  Similarity=0.168  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCC---
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM---  151 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~---  151 (304)
                      +|--+++-+|+.+|-                    .+..|...+|.|.|.|..|-.+++.+...|.+ ++.+|+...   
T Consensus         5 TaaV~LAgll~a~~~--------------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~   64 (222)
T d1vl6a1           5 TAVVVSAAFLNALKL--------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNE   64 (222)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCT
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEc
Confidence            455678888888873                    24569999999999999999999999877765 889998631   


Q ss_pred             C-----hhH-----HHhcC-ceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995          152 D-----PQL-----EKETG-AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  220 (304)
Q Consensus       152 ~-----~~~-----~~~~g-~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~  220 (304)
                      .     ...     .+... .....++.+++..++++....     +.+++.++.+..|.+..++.-.|+...--+..  
T Consensus        65 ~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--  137 (222)
T d1vl6a1          65 NDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--  137 (222)
T ss_dssp             TSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--
T ss_pred             CcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--
Confidence            1     000     11111 122357889999999876654     35788888999999999999999987655543  


Q ss_pred             HHHHcCCce
Q 021995          221 DACSSGHIA  229 (304)
Q Consensus       221 ~aL~~g~i~  229 (304)
                      .+-..|+..
T Consensus       138 ~a~~~G~ai  146 (222)
T d1vl6a1         138 LAREAGAFI  146 (222)
T ss_dssp             HHHHTTCSE
T ss_pred             hheeccceE
Confidence            445567655

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0022  Score=51.88  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-----hc--CcCCEEEEcCCCChh
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-----ML--PKCDIVVVNTPLTEK  186 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~e-----ll--~~aDvVi~~~p~~~~  186 (304)
                      ..+.+|.|.| .|.+|+...+.++.+|++|++..+++.+.+..+++|+..+-+.++     .+  ...|.++-++..  .
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg--~  107 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGD--K  107 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCH--H
T ss_pred             CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcch--H
Confidence            3455787776 599999999999999999999998887777788888754322211     11  224777766641  1


Q ss_pred             hhccccHHHHhcCCCCCEEEEcCC
Q 021995          187 TRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                          .-.+.++.|+++..+|+++.
T Consensus       108 ----~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         108 ----VLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ----HHHHHHHTEEEEEEEEECCC
T ss_pred             ----HHHHHHHHhccccceEeecc
Confidence                13578888999999999974

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0041  Score=48.43  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=54.2

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh----hHHHhcCceec----CC---HH-hhcCcCCEEEEcCCCChh
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE----ED---LD-TMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~----~~~~~~g~~~~----~~---l~-ell~~aDvVi~~~p~~~~  186 (304)
                      .+-|+|+|.+|+.+++.|...|.+|++.+.++...    +.....|+...    .+   |+ .-+.+||.++++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            58999999999999999999999999998765321    11222343221    12   22 236789999999886544


Q ss_pred             hhccccHHHHhcCCCCCEE
Q 021995          187 TRGMFDKDRIAKMKKGVLI  205 (304)
Q Consensus       187 t~~~i~~~~l~~mk~g~il  205 (304)
                      +  +.-....+.+.+...+
T Consensus        85 n--~~~~~~~r~~~~~~~i  101 (153)
T d1id1a_          85 N--AFVVLSAKDMSSDVKT  101 (153)
T ss_dssp             H--HHHHHHHHHHTSSSCE
T ss_pred             H--HHHHHHHHHhCCCCce
Confidence            3  3333444555555433

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.97  E-value=0.014  Score=46.01  Aligned_cols=68  Identities=16%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecCC-------HHhhc-----CcCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~-------l~ell-----~~aDvVi~~~p  182 (304)
                      .|.+|.|+|.|.+|...+..++..|. +|++.|+++.+.+.++++|+..+-+       .++..     ...|+++-++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G  107 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  107 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecC
Confidence            68899999999999999999987776 5889999888888888988643211       12221     35889888886


Q ss_pred             C
Q 021995          183 L  183 (304)
Q Consensus       183 ~  183 (304)
                      .
T Consensus       108 ~  108 (175)
T d1cdoa2         108 N  108 (175)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.95  E-value=0.011  Score=50.16  Aligned_cols=85  Identities=14%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             cCCCEEEEEee-C--hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          115 LEGKTVGTVGC-G--RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       115 L~g~~vgIIG~-G--~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      |+||++.|.|. |  .||.++|+.|...|++|++.+|+....+..+        .+.+....+.+...-+....+...++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~--------~l~~~~~~~~~~~~d~~~~~~~~~~~   74 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVR--------PIAQELNSPYVYELDVSKEEHFKSLY   74 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHH--------HHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--------HHHhhCCceeEeeecccchhhHHHHH
Confidence            89999999996 4  5999999999999999999998753322222        23333445555544444434444444


Q ss_pred             cHHHHhcCCCCCEEEEc
Q 021995          192 DKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~  208 (304)
                       .+..+.+.+--++||.
T Consensus        75 -~~~~~~~g~id~lV~n   90 (274)
T d2pd4a1          75 -NSVKKDLGSLDFIVHS   90 (274)
T ss_dssp             -HHHHHHTSCEEEEEEC
T ss_pred             -HHHHHHcCCCCeEEee
Confidence             2333444444444433

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.013  Score=45.69  Aligned_cols=106  Identities=18%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             CEEEEEee-ChhhHHHHHHhcc---C-CCeEEEEcCCCCCh---hHHHhcCc-eecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKP---F-NCNLLYHDRVKMDP---QLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~---~-G~~V~~~dr~~~~~---~~~~~~g~-~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      |+|||||. |.+|+.+.++|..   | -.++..+..+....   ........ ....+ .+.++++|++++++|....  
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~-~~~~~~~DivF~a~~~~~s--   78 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD-LEALKALDIIVTCQGGDYT--   78 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC-HHHHHTCSEEEECSCHHHH--
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc-hhhhhcCcEEEEecCchHH--
Confidence            58999996 9999999986542   2 23566555433211   11111111 11112 2356899999999985432  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCch-----------hchHHHHHHHHcCC
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAI-----------MDTQAVVDACSSGH  227 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~-----------vd~~aL~~aL~~g~  227 (304)
                      ..+ ...+..-+.+.++|+.|..-=           |+.+.|..++++|.
T Consensus        79 ~~~-~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          79 NEI-YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             HHH-HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             HHh-hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            111 122222234467888885332           45556777777643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.87  E-value=0.012  Score=45.61  Aligned_cols=93  Identities=12%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCC--eEEEEcCCCCC--h-hHHHhc----C----ce-ecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMD--P-QLEKET----G----AK-FEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~--~V~~~dr~~~~--~-~~~~~~----g----~~-~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+|+||| .|.+|+.+|..+...+.  ++..+|.....  . ..+.++    .    .. ...+. +.+++||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            4899999 69999999998876554  79999963211  1 111111    1    11 12343 44689999998854


Q ss_pred             --CChh-h--------hcccc--HHHHhcCCCCCEEEEcCCC
Q 021995          183 --LTEK-T--------RGMFD--KDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       183 --~~~~-t--------~~~i~--~~~l~~mk~g~ilVn~~rg  211 (304)
                        ..+. +        ..++.  .+.+....++++++.++..
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP  121 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP  121 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence              2221 1        11110  1233445678899988644

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.011  Score=46.47  Aligned_cols=95  Identities=20%  Similarity=0.353  Sum_probs=63.7

Q ss_pred             cCCCEEEEEee---ChhhHHHHHHhccCCCe-EEEEcCCCCC-hh----HHHhcCc--eecCCHHhhcCcCCEEEEcCCC
Q 021995          115 LEGKTVGTVGC---GRIGKLLLQRLKPFNCN-LLYHDRVKMD-PQ----LEKETGA--KFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       115 L~g~~vgIIG~---G~IG~~lA~~l~~~G~~-V~~~dr~~~~-~~----~~~~~g~--~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      |.|.+|++||=   |++.++++..+..+|.. +.++.+.... .+    ..+..|.  ....++++.++++|+|......
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            68999999996   66999999999999755 5666654322 11    2233333  4467899999999999865433


Q ss_pred             Chh----------hhccccHHHHhcCCCCCEEEEcC
Q 021995          184 TEK----------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       184 ~~~----------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .+.          ....++.+.++.++++++|..+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            221          11234566777778888877664

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.81  E-value=0.0092  Score=47.63  Aligned_cols=104  Identities=16%  Similarity=0.099  Sum_probs=62.3

Q ss_pred             CEEEEEeeChhhHHHH--HHhc---cC-CCeEEEEcCCCCChhHHH--------hcC----ceecCCHHhhcCcCCEEEE
Q 021995          118 KTVGTVGCGRIGKLLL--QRLK---PF-NCNLLYHDRVKMDPQLEK--------ETG----AKFEEDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA--~~l~---~~-G~~V~~~dr~~~~~~~~~--------~~g----~~~~~~l~ell~~aDvVi~  179 (304)
                      .+|.|||.|++|...+  ..+.   .+ +-+++.+|.++...+...        ..+    .....+.+|.++.||+|++
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi   83 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA   83 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence            4899999999886532  3332   22 247999998754332111        111    2345688899999999999


Q ss_pred             cCCCChhh-----------h--------------------cccc--HHHHhcCCCCCEEEEcCCCchhchHHHHH
Q 021995          180 NTPLTEKT-----------R--------------------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVD  221 (304)
Q Consensus       180 ~~p~~~~t-----------~--------------------~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~  221 (304)
                      +.-....-           .                    .++-  .+.+....|+++++|++..--+-..++.+
T Consensus        84 tag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k  158 (167)
T d1u8xx1          84 HIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR  158 (167)
T ss_dssp             CCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHH
T ss_pred             CCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHH
Confidence            87532110           0                    0000  12234457899999998775555555544

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.78  E-value=0.011  Score=46.30  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=48.5

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC----CCeEEEEcCCCCChhHH---HhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLE---KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  189 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~---~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~  189 (304)
                      ++||||| .|-+|+++.++|...    ..++..+..+....+..   ..........-.+.+.++|++++|+|.... ..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s-~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYT-EK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHH-HH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHH-HH
Confidence            4899999 599999999877532    24555544322111110   011111111123557899999999995322 11


Q ss_pred             cccHHHHhcCCCCCEEEEcCC
Q 021995          190 MFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      + -... ..-....++||.|.
T Consensus        80 ~-~~~l-~~~g~~~~VIDlSs   98 (147)
T d1mb4a1          80 V-YPAL-RQAGWKGYWIDAAS   98 (147)
T ss_dssp             H-HHHH-HHTTCCSEEEESSS
T ss_pred             H-hHHH-HHcCCceEEEeCCc
Confidence            1 1222 22233467888874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.78  E-value=0.013  Score=46.75  Aligned_cols=67  Identities=18%  Similarity=0.193  Sum_probs=42.8

Q ss_pred             CEEEEEeeChhhH--HHHHHhc---cCC-CeEEEEcCCCCCh--hHHH--------hcCc----eecCCHHhhcCcCCEE
Q 021995          118 KTVGTVGCGRIGK--LLLQRLK---PFN-CNLLYHDRVKMDP--QLEK--------ETGA----KFEEDLDTMLPKCDIV  177 (304)
Q Consensus       118 ~~vgIIG~G~IG~--~lA~~l~---~~G-~~V~~~dr~~~~~--~~~~--------~~g~----~~~~~l~ell~~aDvV  177 (304)
                      .+|.|||.|++|.  .++..++   .+. -++..+|.+....  +...        ..+.    ...++..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            3799999998773  4444443   232 4799999865321  1111        1121    2346788889999999


Q ss_pred             EEcCCCC
Q 021995          178 VVNTPLT  184 (304)
Q Consensus       178 i~~~p~~  184 (304)
                      +++....
T Consensus        82 v~ta~~~   88 (169)
T d1s6ya1          82 TTQFRVG   88 (169)
T ss_dssp             EECCCTT
T ss_pred             EEccccC
Confidence            9998643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.76  E-value=0.0038  Score=53.26  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 5699999999999999999999864

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.68  E-value=0.026  Score=45.31  Aligned_cols=97  Identities=24%  Similarity=0.354  Sum_probs=61.8

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC-CCeEEEE-cCCCCChhHHH---h-cCc--eecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEK---E-TGA--KFEEDLDTMLPKCDIVVVNTPLTEKTR  188 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~-dr~~~~~~~~~---~-~g~--~~~~~l~ell~~aDvVi~~~p~~~~t~  188 (304)
                      .+|||+| .|-+|+++.+.|..+ ..++... .++........   . .+.  ....+.+++..++|++++++|....  
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s--   79 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS--   79 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--
Confidence            4899999 599999999999754 4566544 33222111111   1 111  1124667777789999999996543  


Q ss_pred             ccccHHHHhcCCCCCEEEEcCCCchhchHHHHH
Q 021995          189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVD  221 (304)
Q Consensus       189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~  221 (304)
                          .+..... .+..+||.|..-=.+....++
T Consensus        80 ----~~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          80 ----YDLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             ----HHHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ----HHHHHhh-ccceEEecCccccccchhhHH
Confidence                3333443 578999999777666655554

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0084  Score=50.23  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=35.6

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCCh
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP  153 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~  153 (304)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+|+....
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~   42 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG   42 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            3699999999986 5599999999999999999999876443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.61  E-value=0.006  Score=51.91  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|.||++.|-|.+ .||+++|+.|...|++|++.+|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6999999999974 699999999999999999999864

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.59  E-value=0.00074  Score=54.09  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccc
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i  191 (304)
                      .+|||||+|.+|+..++.++...    ..+...+....   .....+.. ..++++++.  +.|+|++++|....  .-+
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H--~~~   81 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE---LGSLDEVR-QISLEDALRSQEIDVAYICSESSSH--EDY   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC---CCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGH--HHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHH---HHHhhccC-cCCHHHHHhCCCcchhhhccccccc--ccc
Confidence            38999999999999998887643    23333222111   11112233 347888875  56889999995432  222


Q ss_pred             cHHHHhcCCCCCEEEEcC-CCchhchHHHHHHHHcCCce
Q 021995          192 DKDRIAKMKKGVLIVNNA-RGAIMDTQAVVDACSSGHIA  229 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~-rg~~vd~~aL~~aL~~g~i~  229 (304)
                      -...++.=+  .+++.== --.+-+.+.|.+..++....
T Consensus        82 ~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          82 IRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            233333222  3444321 23455666677765555443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.59  E-value=0.012  Score=47.47  Aligned_cols=88  Identities=18%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             CCCEEEEE--eeChhhHHHHHHhccCCCeEEEEcCCCCChh----HHHhcCceecCCH------------Hhh----cCc
Q 021995          116 EGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ----LEKETGAKFEEDL------------DTM----LPK  173 (304)
Q Consensus       116 ~g~~vgII--G~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~----~~~~~g~~~~~~l------------~el----l~~  173 (304)
                      .|+++.|+  |.|.+|....+.++.+|++|++..+++...+    ..+++|+..+-+.            .++    -..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            57889998  6799999999999999999988766554332    3456675432111            111    234


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995          174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .|+++-++. .+.     -...+..|+++..+|.++
T Consensus       108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECC
T ss_pred             ceEEEECCC-cch-----hhhhhhhhcCCcEEEEEC
Confidence            788888775 222     156788999999999986

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0094  Score=50.58  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=55.4

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCC--hhhhc
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT--EKTRG  189 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~--~~t~~  189 (304)
                      ..|+||++.|.|. +.||+++|+.|...|++|++.+|+....+...       ..+.+.-...+++.+.+-.+  ++.+.
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~-------~~l~~~~~~~~~~~~~~Dls~~~~v~~   78 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA-------AECKSAGYPGTLIPYRCDLSNEEDILS   78 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-------HHHHHTTCSSEEEEEECCTTCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-------HHHHhcCCCceEEEEEccCCCHHHHHH
Confidence            4599999999996 56999999999999999999998642222111       12222222345555554333  34444


Q ss_pred             cccHHHHhcCCCCCEEEEcCC
Q 021995          190 MFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      +++ +..+...+=-++||.+-
T Consensus        79 ~v~-~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          79 MFS-AIRSQHSGVDICINNAG   98 (257)
T ss_dssp             HHH-HHHHHHCCCSEEEECCC
T ss_pred             HHH-HHHHhcCCCCEEEeccc
Confidence            443 44444444456677663

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.52  E-value=0.0095  Score=50.24  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEeeC---hhhHHHHHHhccCCCeEEEEcCCC
Q 021995          113 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~G---~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+|+||++.|.|.+   .||+++|+.|...|++|++.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            36999999999974   599999999999999999888764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0052  Score=52.14  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ..|.||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999996 7799999999999999999999864

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.011  Score=45.14  Aligned_cols=84  Identities=17%  Similarity=0.080  Sum_probs=51.6

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  195 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~  195 (304)
                      ++|+|+|+ |+||+.+++.+...|+++. .+|++                 ..+.+..+|+|+--... +.+...+    
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~-----------------~~~~~~~~DVvIDFS~p-~~~~~~l----   58 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN-----------------GVEELDSPDVVIDFSSP-EALPKTV----   58 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT-----------------EEEECSCCSEEEECSCG-GGHHHHH----
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC-----------------cHHHhccCCEEEEecCH-HHHHHHH----
Confidence            47999996 9999999999998899865 44432                 12335678998755431 2222222    


Q ss_pred             HhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995          196 IAKMKKGVLIVNNARGAIMDTQAVVDAC  223 (304)
Q Consensus       196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL  223 (304)
                      -..++.+.-+|-...|-.-+..+.++.+
T Consensus        59 ~~~~~~~~p~ViGTTG~~~~~~~~i~~~   86 (128)
T d1vm6a3          59 DLCKKYRAGLVLGTTALKEEHLQMLREL   86 (128)
T ss_dssp             HHHHHHTCEEEECCCSCCHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEcCCCCHHHHHHHHHH
Confidence            1223445667767777544444444444

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.47  E-value=0.013  Score=43.10  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=48.6

Q ss_pred             CCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995          117 GKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       117 g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .++|||+|+          ..-.-.+.+.|...|++|.+|||.-...+.  ..+.....++++++..||+|++...
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~~   88 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNRY   88 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSSC
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcCC
Confidence            368999996          456778999999999999999996543221  2345566799999999998775443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.42  E-value=0.035  Score=44.56  Aligned_cols=97  Identities=13%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC-CCeEEEE-cCCCCChhHHHh---c-C--c-eecCCHHhhcCcCCEEEEcCCCChhh
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEKE---T-G--A-KFEEDLDTMLPKCDIVVVNTPLTEKT  187 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~-dr~~~~~~~~~~---~-g--~-~~~~~l~ell~~aDvVi~~~p~~~~t  187 (304)
                      .+|||+| .|-.|+++.+.|... .+++... +++.........   . +  . ......++...++|++++++|.... 
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s-   84 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT-   84 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH-
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH-
Confidence            4799999 599999999999864 4565544 332211111111   1 0  0 1112234567789999999995533 


Q ss_pred             hccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  220 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~  220 (304)
                           .+....+.+...+|+.+.+.-....+.+
T Consensus        85 -----~~~~~~l~~~~~~v~~~~~~~~~~~~~~  112 (183)
T d2cvoa1          85 -----QEIIKGLPQELKIVDLSADFRLRDINEY  112 (183)
T ss_dssp             -----HHHHHTSCSSCEEEECSSTTTCSCHHHH
T ss_pred             -----HHHHHHHHhcCcccccchhhhccccchh
Confidence                 4555666666677777666555444433

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.41  E-value=0.012  Score=50.55  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=35.5

Q ss_pred             ccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          112 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       112 ~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ..+|+||++.|-| .|.||+++|+.|...|++|++.+|+.
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3589999999998 58899999999999999999999865

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.35  E-value=0.0082  Score=50.97  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCCh
Q 021995          114 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDP  153 (304)
Q Consensus       114 ~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~  153 (304)
                      +|+||++.|-|.+ .||+++|+.|...|++|++.+|+....
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~   46 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   46 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            6899999999864 599999999999999999999976543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.33  E-value=0.008  Score=44.89  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .++|.|||.|.+|-++|..|..+|.+|+.+.+..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4799999999999999999999999999999864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.33  E-value=0.0072  Score=50.00  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ||+|.|||.|.-|-..|..|+..|++|++++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6899999999999999999999999999999754

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.29  E-value=0.0066  Score=51.45  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999996 5699999999999999999999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0077  Score=45.28  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +++.|||.|.||-++|..|..+|++|+.+.+.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            699999999999999999999999999998765

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.27  E-value=0.0078  Score=46.90  Aligned_cols=64  Identities=19%  Similarity=0.320  Sum_probs=42.6

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC--eEEEEcCCCCCh--h-HHHhc-------C--cee---cCCHHhhcCcCCEEEE
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP--Q-LEKET-------G--AKF---EEDLDTMLPKCDIVVV  179 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~--~V~~~dr~~~~~--~-~~~~~-------g--~~~---~~~l~ell~~aDvVi~  179 (304)
                      ++|+|||. |.+|+.+|..+...|.  ++..+|+.+...  + .+.++       .  ...   .++-.+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            47999995 9999999999987774  799999864211  1 11111       1  111   1223467889999999


Q ss_pred             cC
Q 021995          180 NT  181 (304)
Q Consensus       180 ~~  181 (304)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0094  Score=50.80  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          114 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       114 ~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      -|+||++.|.|.+ .||+++|+.|...|++|++.+|+..
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4999999999975 5999999999999999999999653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.27  E-value=0.011  Score=49.90  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ..|.+|++.|.|. +.||+++|+.|...|++|++++|+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3588999999986 6799999999999999999999864

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.042  Score=44.00  Aligned_cols=96  Identities=13%  Similarity=0.113  Sum_probs=65.8

Q ss_pred             ccCCCEEEEEeeC--hhhHHHHHHhccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 021995          114 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       114 ~L~g~~vgIIG~G--~IG~~lA~~l~~~G~~V~~~dr~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVi~~  180 (304)
                      .+.|.+|+++|=|  ++.++++..+..||+++.++.|... +.+        .....|  ....+++++.++++|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4788999999965  6999999999999999999987532 211        112223  24567899999999999775


Q ss_pred             CCCC----hh----------hhccccHHHHhcCCCCCEEEEcC
Q 021995          181 TPLT----EK----------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       181 ~p~~----~~----------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      .=..    ..          ....++.......+++++|..+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            4311    00          11233445555678888888775

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.20  E-value=0.016  Score=49.22  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999986 5699999999999999999999865

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=95.18  E-value=0.0088  Score=50.11  Aligned_cols=69  Identities=12%  Similarity=0.102  Sum_probs=45.0

Q ss_pred             CCCEEEEEeeChhhH----HHHHHhcc--CCCeEE-EEcCCCCChh-HHHhcCc---eecCCHHhhcC--cCCEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGK----LLLQRLKP--FNCNLL-YHDRVKMDPQ-LEKETGA---KFEEDLDTMLP--KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~----~lA~~l~~--~G~~V~-~~dr~~~~~~-~~~~~g~---~~~~~l~ell~--~aDvVi~~~p  182 (304)
                      +-.+|||||+|.+|.    .....++.  -+++++ ++|++....+ ..++++.   ..++++++++.  +-|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            446899999998554    33344443  367866 6788654333 3344443   34679999885  5778999998


Q ss_pred             CC
Q 021995          183 LT  184 (304)
Q Consensus       183 ~~  184 (304)
                      ..
T Consensus        95 ~~   96 (237)
T d2nvwa1          95 VP   96 (237)
T ss_dssp             HH
T ss_pred             Cc
Confidence            54

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.18  E-value=0.017  Score=48.65  Aligned_cols=45  Identities=18%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             ccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh
Q 021995          114 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE  158 (304)
Q Consensus       114 ~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~  158 (304)
                      .|+||++.|-| -+.||+++|+.|...|++|++.+++.+..+..++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~   47 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA   47 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            38999999998 5779999999999999999999997654444433

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.014  Score=49.02  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999996 6699999999999999999999864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.13  E-value=0.0087  Score=44.36  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+++.|||.|.+|-++|..+..+|.+|+.+.+.+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            3799999999999999999999999999998765

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.11  E-value=0.0058  Score=48.65  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM  151 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~  151 (304)
                      .+++|.|||.|..|-..|..|+..|++ |++++++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            478999999999999999999999995 999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0077  Score=51.14  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999986 6699999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.01  Score=44.12  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +++.|||.|.+|-++|..|+.+|.+|+.+.+.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            689999999999999999999999999999865

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.02  E-value=0.07  Score=43.31  Aligned_cols=100  Identities=17%  Similarity=0.328  Sum_probs=74.4

Q ss_pred             HHHHHhccCCCeEEEEcCCC----CChhHHHhcCceecCCHHhhcCcCCEEEE-cCCCChhhhccccHHHHhcCCCCCEE
Q 021995          131 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVV-NTPLTEKTRGMFDKDRIAKMKKGVLI  205 (304)
Q Consensus       131 ~lA~~l~~~G~~V~~~dr~~----~~~~~~~~~g~~~~~~l~ell~~aDvVi~-~~p~~~~t~~~i~~~~l~~mk~g~il  205 (304)
                      ..++.|...|++|++=.--.    -+.+.-.+.|++..++.++++.++|+|+. ..|...+    ...+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            57788999999998754322    23344456688877788999999998874 4554332    123567889999999


Q ss_pred             EEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995          206 VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  236 (304)
Q Consensus       206 Vn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  236 (304)
                      |..--  .....++.++|.+.++...++|..
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence            98764  567788999999999998888855

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.96  E-value=0.008  Score=51.15  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|.|. +.||+++|+.|...|++|++++|+.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999996 5599999999999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.033  Score=46.50  Aligned_cols=39  Identities=18%  Similarity=0.140  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEeeC---hhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995          114 DLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus       114 ~L~g~~vgIIG~G---~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      .|.||++.|.|.+   .||+++|+.|...|++|++.+++...
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            3899999999975   49999999999999999999887543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.87  E-value=0.0087  Score=50.85  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|+||++.|.|.+ .||+++|+.|...|++|++.+|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999964 699999999999999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.82  E-value=0.0085  Score=45.04  Aligned_cols=33  Identities=12%  Similarity=-0.034  Sum_probs=30.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +++.|||.|.||-++|..|+.+|.+|+.+.+++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            589999999999999999999999999887753

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.012  Score=49.43  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999985 6699999999999999999999864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.79  E-value=0.0085  Score=50.37  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|.|.+. ||+++|+.|...|++|++.+|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999755 99999999999999999999864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.75  E-value=0.0095  Score=50.76  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3699999999985 7799999999999999999999864

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.74  E-value=0.021  Score=47.87  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 5699999999999999999999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.74  E-value=0.016  Score=48.67  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999996 5699999999999999999999864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0075  Score=41.89  Aligned_cols=45  Identities=13%  Similarity=0.221  Sum_probs=38.7

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG  160 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g  160 (304)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++++.+..+++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            5778999875 99999999999999999999988777777777665

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.73  E-value=0.017  Score=49.06  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             cccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          111 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       111 ~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+.+|.||++.|-| .+.||+++|+.|...|++|++.+++.
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            34579999999999 58899999999999999999888754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.014  Score=43.88  Aligned_cols=33  Identities=18%  Similarity=0.100  Sum_probs=31.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +++.|||.|.||-++|..|..+|.+|+.+.++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            799999999999999999999999999999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.017  Score=46.51  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ...+|+|.|||-|..|-+.|..|...|++|++|++.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            4678999999999999999999999999999999865

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.68  E-value=0.014  Score=49.21  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999986 6699999999999999999999864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.57  E-value=0.023  Score=47.76  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            489999999986 5699999999999999999999865

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.57  E-value=0.027  Score=47.38  Aligned_cols=67  Identities=24%  Similarity=0.254  Sum_probs=47.3

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhH--------HHhcCcee-------cCCHHhhcCcCCEEEEcC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--------EKETGAKF-------EEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~--------~~~~g~~~-------~~~l~ell~~aDvVi~~~  181 (304)
                      +||.|.| .|.||+.+++.|...|++|++.+|+......        ....+++.       .+++.+.+..++.++.+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~   83 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   83 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence            5799999 5999999999999999999999986532211        11223321       123456788899988887


Q ss_pred             CCC
Q 021995          182 PLT  184 (304)
Q Consensus       182 p~~  184 (304)
                      +..
T Consensus        84 ~~~   86 (312)
T d1qyda_          84 AGG   86 (312)
T ss_dssp             CCS
T ss_pred             hhc
Confidence            654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.55  E-value=0.015  Score=43.40  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+++.|||.|.||-++|..|+.+|++|+.+.+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            3789999999999999999999999999888654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.53  E-value=0.017  Score=42.77  Aligned_cols=36  Identities=17%  Similarity=0.033  Sum_probs=33.0

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ..+++|.|||.|.+|-++|..|..+|.+|..+.+.+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            357999999999999999999999999999998864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.52  E-value=0.052  Score=45.68  Aligned_cols=87  Identities=21%  Similarity=0.206  Sum_probs=53.0

Q ss_pred             ccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCC-h--hhhc
Q 021995          114 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-E--KTRG  189 (304)
Q Consensus       114 ~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~-~--~t~~  189 (304)
                      +|+||++.|-|.+ .||.++|+.|...|++|++..|+....+...        .+........+.+..+-.+ +  +.+.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~--------~~~~~~~~~~~~~~~~d~~~~~~~~~~   73 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA--------ELKAINPKVNITFHTYDVTVPVAESKK   73 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH--------HHHHHCTTSEEEEEECCTTSCHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH--------HHHhhCCCCCEEEEEeecCCCHHHHHH
Confidence            5899999999965 6999999999999999887766554433222        2333444455555554443 1  2333


Q ss_pred             cccHHHHhcCCCCCEEEEcC
Q 021995          190 MFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       190 ~i~~~~l~~mk~g~ilVn~~  209 (304)
                      +++ +..+...+=-+|||.+
T Consensus        74 ~~~-~~~~~~g~iDilvnnA   92 (254)
T d1sbya1          74 LLK-KIFDQLKTVDILINGA   92 (254)
T ss_dssp             HHH-HHHHHHSCCCEEEECC
T ss_pred             HHH-HHHHHcCCCCEEEeCC
Confidence            332 3333344333566655

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.46  E-value=0.018  Score=43.16  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .++++.|||.|.+|-++|..|+..|.+|+.+++.+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            36899999999999999999999999999998865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.43  E-value=0.005  Score=49.70  Aligned_cols=89  Identities=18%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCe-EEEEcCCCCCh-hHHHhcCceec-----CCHHhhcC-----cCCEEEEcCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCN-LLYHDRVKMDP-QLEKETGAKFE-----EDLDTMLP-----KCDIVVVNTP  182 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~-~~~~~~g~~~~-----~~l~ell~-----~aDvVi~~~p  182 (304)
                      .+++|.|.| .|.+|...++.++.+|++ |++.+.+.+.. ...++.|...+     +++.+.++     ..|+|+-++.
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            347899999 599999999999999997 44455543222 23345665321     34444333     3999998885


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  210 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~r  210 (304)
                      . +.     -...++.++++..++.++.
T Consensus       110 g-~~-----~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 G-DI-----SNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             H-HH-----HHHHHTTEEEEEEEEEC--
T ss_pred             c-hh-----HHHHhhhccccccEEEecc
Confidence            2 11     2577889999999999873

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.02  Score=45.31  Aligned_cols=90  Identities=23%  Similarity=0.225  Sum_probs=55.8

Q ss_pred             CEEEEEee-ChhhHHHHHHhcc-CCCeEE-EEcCCCCChh--------HHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQ--------LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  186 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~~--------~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~  186 (304)
                      .+|+|+|+ |+||+.+++.+.. -++++. ++++...+.-        .....++....++++++..+|+|+-.... +.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p-~~   83 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP-EG   83 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccH-HH
Confidence            48999995 9999999998864 578854 6666432110        01122344556788899999999866541 22


Q ss_pred             hhccccHHHHhc-CCCCCEEEEcCCCch
Q 021995          187 TRGMFDKDRIAK-MKKGVLIVNNARGAI  213 (304)
Q Consensus       187 t~~~i~~~~l~~-mk~g~ilVn~~rg~~  213 (304)
                      +.     +.++. .+.+.-+|-...|--
T Consensus        84 ~~-----~~~~~a~~~~~~~ViGTTG~~  106 (162)
T d1diha1          84 TL-----NHLAFCRQHGKGMVIGTTGFD  106 (162)
T ss_dssp             HH-----HHHHHHHHTTCEEEECCCCCC
T ss_pred             HH-----HHHHHHHhccceeEEecCCCc
Confidence            22     22222 345666776777743

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.39  E-value=0.0096  Score=44.74  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+++.|||.|.||-++|..+..+|++|+++.+++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999999998865

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.38  E-value=0.019  Score=43.00  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ..+++|.|||.|.+|-++|..|...|.+|+.+++.+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            357899999999999999999999999999998754

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.027  Score=46.42  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             ccCCCEEEEEe-eChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCc-------eecCCHHhhcCcCCEEEEcCCC
Q 021995          114 DLEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       114 ~L~g~~vgIIG-~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~-------~~~~~l~ell~~aDvVi~~~p~  183 (304)
                      .+.+++|.|.| .|.+|+.+++.|...|.  +|++++|++..........+       ...+++.+.++.+|+++.++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            46788999998 69999999999977674  79999986533221111111       1224566778999999887754


Q ss_pred             C
Q 021995          184 T  184 (304)
Q Consensus       184 ~  184 (304)
                      +
T Consensus        91 ~   91 (232)
T d2bkaa1          91 T   91 (232)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.29  E-value=0.016  Score=44.81  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=30.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~  150 (304)
                      +||+|.|||.|.+|-++|..|+..+  .+|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5899999999999999999998776  5789998765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.027  Score=47.44  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=32.1

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +.||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999986 6699999999999999999999865

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.21  E-value=0.023  Score=48.41  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999986 6699999999999999999999865

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.21  E-value=0.018  Score=48.62  Aligned_cols=33  Identities=30%  Similarity=0.289  Sum_probs=27.2

Q ss_pred             CEEEEE-ee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTV-GC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgII-G~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |||.+| |. +.||+++|+.|...|++|++.+|+.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456554 64 5699999999999999999999865

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.10  E-value=0.015  Score=49.13  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            389999999986 7799999999999999999999864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.07  E-value=0.02  Score=48.97  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999986 6799999999999999999999864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.03  E-value=0.017  Score=50.28  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|-|. +.||+++|+.|...|++|++.|++.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            689999999986 5599999999999999999998864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.025  Score=51.62  Aligned_cols=85  Identities=21%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH--------HHhcC-------------------cee---
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL--------EKETG-------------------AKF---  163 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~--------~~~~g-------------------~~~---  163 (304)
                      |.+++|.|||+|.+|..+++.|...|. ++..+|.......-        ....|                   +..   
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678899999999999999999998888 58888875321110        00011                   111   


Q ss_pred             --cCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCC
Q 021995          164 --EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK  200 (304)
Q Consensus       164 --~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk  200 (304)
                        .+..+++++++|+|+.++- +.+++..++...+...+
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence              0122467899999987775 45667777776655433

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.03  E-value=0.17  Score=40.88  Aligned_cols=97  Identities=9%  Similarity=0.035  Sum_probs=70.5

Q ss_pred             HHHHHhccCCCeEEEEcCCC----CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE
Q 021995          131 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  206 (304)
Q Consensus       131 ~lA~~l~~~G~~V~~~dr~~----~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV  206 (304)
                      ..+++|...|++|++=.--.    -+.+.-.+.|+...++.+++. ++|+|+..-|.+        .+.++.||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            56788888899998764322    233444556887777777877 589887655533        34578899999998


Q ss_pred             EcCCCchhchHHHHHHHHcCCceEEEeecCCC
Q 021995          207 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  238 (304)
Q Consensus       207 n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (304)
                      -.-..  ....++.++|.+.++...++|..+.
T Consensus        92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLHL--AAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence            87654  4567899999999999888886644

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.012  Score=45.67  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             CEEEEEee-ChhhHHHHHHhcc--C-CCeEEEEcCCCCChhHHHhcC--ceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKP--F-NCNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  191 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~--~-G~~V~~~dr~~~~~~~~~~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i  191 (304)
                      .+|||||. |-+|+++.+.|..  + ..++..+..+...-+.....+  ........+.+.++|++++++|....     
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s-----   77 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVS-----   77 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHH-----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchh-----
Confidence            58999996 9999999999953  3 346655432221111111101  11111123456789999999984322     


Q ss_pred             cHHHH-hcCCCCCEEEEcCCC
Q 021995          192 DKDRI-AKMKKGVLIVNNARG  211 (304)
Q Consensus       192 ~~~~l-~~mk~g~ilVn~~rg  211 (304)
                       .+.. ...+.|..+||.|.-
T Consensus        78 -~~~~~~~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          78 -RAHAERARAAGCSVIDLSGA   97 (144)
T ss_dssp             -HHHHHHHHHTTCEEEETTCT
T ss_pred             -hhhccccccCCceEEeechh
Confidence             2222 224678999998743

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.99  E-value=0.026  Score=42.10  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      ++++.|||.|.+|-++|..|..+|.+|+.+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            46899999999999999999999999999998653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.024  Score=49.13  Aligned_cols=88  Identities=19%  Similarity=0.318  Sum_probs=55.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc---CcCCEEEEcCCCC--hhh
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLT--EKT  187 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell---~~aDvVi~~~p~~--~~t  187 (304)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+..+.+...+       ++.+-+   ....++.+.+-.+  ++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~-------el~~~~~~~~~~~~~~~~~Dvs~~~~v   81 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAD-------ELQANLPPTKQARVIPIQCNIRNEEEV   81 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHhhhccccCceEEEEeccCCCHHHH
Confidence            599999999996 569999999999999999999986532221111       122111   2345665555433  234


Q ss_pred             hccccHHHHhcCCCCCEEEEcC
Q 021995          188 RGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       188 ~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..++ ++..+...+=-++||.+
T Consensus        82 ~~~~-~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          82 NNLV-KSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             HHHH-HHHHHHHSCCCEEEECC
T ss_pred             HHHH-HHHHHHhCCeEEEEeec
Confidence            4444 33445555556777765

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.87  E-value=0.032  Score=42.01  Aligned_cols=63  Identities=21%  Similarity=0.270  Sum_probs=38.4

Q ss_pred             EEEEEeeChhhHHHHHHhc-cCCCeEE-EEcCCCCChhHHHhcCce--ecCCHHhhcC-cCCEEEEcCC
Q 021995          119 TVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTP  182 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~-~~G~~V~-~~dr~~~~~~~~~~~g~~--~~~~l~ell~-~aDvVi~~~p  182 (304)
                      +|.|+|+|++|+.+++.+. .-|++++ ++|.++..... .-.|+.  ..+.++++.+ ..++.++++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~-~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR-PVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC-EETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC-EECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7999999999999999775 4588866 55654432111 111332  2345555443 3556666666

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.86  E-value=0.04  Score=43.92  Aligned_cols=99  Identities=13%  Similarity=0.141  Sum_probs=60.0

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC-CCeEEEE-cCC--CCChhHHHhc-----C-----ceecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRV--KMDPQLEKET-----G-----AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~-dr~--~~~~~~~~~~-----g-----~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+|+|+| .|-+|+++.+.|... .+++... .++  ....+.....     +     .....+.+.....+|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 699999999999875 6676543 221  1111111110     1     1122344556788999999999


Q ss_pred             CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHH
Q 021995          183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVD  221 (304)
Q Consensus       183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~  221 (304)
                      .....     +-.-...+.+..+||.+..--.+....+.
T Consensus        82 ~~~s~-----~~~~~~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          82 HEVSH-----DLAPQFLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             HHHHH-----HHHHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             chhHH-----HHhhhhhhcCceeeccccccccccccccc
Confidence            43221     11222346789999999766665555443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.016  Score=49.38  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=30.9

Q ss_pred             CCCEEEEE--eeChhhHHHHHHhcc-CCCeEEEEcCCCC
Q 021995          116 EGKTVGTV--GCGRIGKLLLQRLKP-FNCNLLYHDRVKM  151 (304)
Q Consensus       116 ~g~~vgII--G~G~IG~~lA~~l~~-~G~~V~~~dr~~~  151 (304)
                      +||+|+||  |-+.||.++|+.|.. .|++|+.++|+..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999998  678899999999875 5999999999753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.75  E-value=0.021  Score=42.06  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+++.|||.|.+|-++|..|..+|++|+.+.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            3799999999999999999999999999998764

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.11  Score=45.20  Aligned_cols=96  Identities=19%  Similarity=0.318  Sum_probs=64.2

Q ss_pred             ccCCCEEEEEee---ChhhHHHHHHhccCC-CeEEEEcCCCC-Chh----HHHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 021995          114 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM-DPQ----LEKETG--AKFEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G-~~V~~~dr~~~-~~~----~~~~~g--~~~~~~l~ell~~aDvVi~~~p  182 (304)
                      .+.|++|+++|-   +++..+++..+..+| +++.++.|... ..+    .+++.+  .....++++.++++|+|....-
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            489999999997   778999999998885 68888877532 221    122233  3456789999999999875432


Q ss_pred             CChh----------hhccccHHHHhcCCCCCEEEEcC
Q 021995          183 LTEK----------TRGMFDKDRIAKMKKGVLIVNNA  209 (304)
Q Consensus       183 ~~~~----------t~~~i~~~~l~~mk~g~ilVn~~  209 (304)
                      ..+.          ....++.+.++.++++++|..+.
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL  267 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence            2210          01235666677777777776553

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.73  E-value=0.022  Score=48.30  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 5699999999999999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.69  E-value=0.021  Score=43.01  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=31.6

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .+++.|||.|.||-++|..+..+|.+|+.+.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999999998765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.69  E-value=0.058  Score=44.68  Aligned_cols=64  Identities=23%  Similarity=0.360  Sum_probs=46.6

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-----cCC---HHhhcCcCCEEEEcC
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-----EED---LDTMLPKCDIVVVNT  181 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-----~~~---l~ell~~aDvVi~~~  181 (304)
                      |+||++.|.|. +.||+++|+.|...|++|++.+|+.   +..++.+.+.     .+.   +.+-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~---~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE---ELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---HHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999996 6699999999999999999999864   3344443321     112   234456789888764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.62  E-value=0.021  Score=48.27  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999985 5699999999999999999999864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.61  E-value=0.033  Score=45.87  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ..++|.|||.|..|-.+|..|+..|++|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46799999999999999999999999999999854

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.076  Score=45.85  Aligned_cols=117  Identities=10%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC----CC-------eEE
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLL  144 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~----G~-------~V~  144 (304)
                      +|--+++-+|+.+|-                    .++.|...+|.|.|.|.-|-.+++.+...    |.       +++
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~   63 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV--------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW   63 (294)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE
Confidence            456678888888872                    24468889999999999999999887644    32       488


Q ss_pred             EEcCCCC---C----hhHHHh----cCc-eecCCHHhhcC--cCCEEEEcCCCChhhhccccHHHHh---cCCCCCEEEE
Q 021995          145 YHDRVKM---D----PQLEKE----TGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKDRIA---KMKKGVLIVN  207 (304)
Q Consensus       145 ~~dr~~~---~----~~~~~~----~g~-~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~~~l~---~mk~g~ilVn  207 (304)
                      .+|+...   .    ....+.    ... ....+|+++++  +.|+++-+..    .-+++.++.++   .|.+..++.-
T Consensus        64 lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFa  139 (294)
T d1pj3a1          64 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFA  139 (294)
T ss_dssp             EEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEE
T ss_pred             EEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEE
Confidence            8887531   0    000011    111 11246888765  6787766542    12567777765   4568999999


Q ss_pred             cCCCchhch
Q 021995          208 NARGAIMDT  216 (304)
Q Consensus       208 ~~rg~~vd~  216 (304)
                      .|....--+
T Consensus       140 LSNPt~~~e  148 (294)
T d1pj3a1         140 LSNPTAQAE  148 (294)
T ss_dssp             CCSSGGGCS
T ss_pred             ccCCCCcCC
Confidence            998876533

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.58  E-value=0.045  Score=45.49  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=31.2

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      -|||.|.|. |.+|+.+++.|...|++|++++|++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            468999995 99999999999989999999998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.56  E-value=0.034  Score=42.12  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      .++++.|||-|.+|-++|..|...|.+|.++++.+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            468999999999999999999999999999998653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.55  E-value=0.019  Score=48.46  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999985 6699999999999999999999864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.54  E-value=0.027  Score=45.93  Aligned_cols=33  Identities=24%  Similarity=0.136  Sum_probs=30.8

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      -++|.|||.|.+|-..|..|+..|++|+++++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            468999999999999999999999999999975

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.53  E-value=0.036  Score=46.85  Aligned_cols=37  Identities=14%  Similarity=0.106  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999885 7799999999999999999999865

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.48  E-value=0.082  Score=44.61  Aligned_cols=81  Identities=21%  Similarity=0.254  Sum_probs=55.8

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      ..|++|++||+-    ...+.++..|+++.++++++..       |......-++++++||+|+++-.  .-..+-+ ..
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTGs--TlvN~Tl-~~  185 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITCA--SVVDKTL-PR  185 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEETH--HHHHTCH-HH
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEec--hhhcCCH-HH
Confidence            469999999874    3556667778999999997632       22233456789999999998763  1111222 46


Q ss_pred             HHhcCCCCCEEEEcC
Q 021995          195 RIAKMKKGVLIVNNA  209 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~  209 (304)
                      +|++.|+...+|=+|
T Consensus       186 LL~~~~~a~~vvl~G  200 (251)
T d2h1qa1         186 LLELSRNARRITLVG  200 (251)
T ss_dssp             HHHHTTTSSEEEEES
T ss_pred             HHHhCCcCCEEEEEC
Confidence            777788877776665

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.45  E-value=0.017  Score=45.22  Aligned_cols=90  Identities=23%  Similarity=0.317  Sum_probs=53.3

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCC---eEEEEcCCCCChhHHHh--cCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKE--TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  190 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~---~V~~~dr~~~~~~~~~~--~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~  190 (304)
                      |-+|||||. |-+|+++.+.|....+   ++..+..+....+....  .........++...+.|++++++|.....   
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~---   77 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSA---   77 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHH---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchh---
Confidence            458999996 9999999999976543   34444322111110000  01112233456678899999999843221   


Q ss_pred             ccHHHHhcCCCCCEEEEcCCC
Q 021995          191 FDKDRIAKMKKGVLIVNNARG  211 (304)
Q Consensus       191 i~~~~l~~mk~g~ilVn~~rg  211 (304)
                        +......++|..+||.|.-
T Consensus        78 --~~~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          78 --KYAPYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             --HHHHHHHHTTCEEEECSST
T ss_pred             --hHHhhhccccceehhcChh
Confidence              1222345689999999743

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.44  E-value=0.022  Score=48.60  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999986 5699999999999999999999865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.41  E-value=0.043  Score=47.72  Aligned_cols=69  Identities=19%  Similarity=0.227  Sum_probs=49.0

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHH---HhcCcee-----cC---CHHhhcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE---KETGAKF-----EE---DLDTMLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~---~~~g~~~-----~~---~l~ell~~aDvVi~~~p~  183 (304)
                      +.|+|.|+| .|.||+.+++.|.+.|++|.+..|++.+....   ...+++.     .+   .++.++..+|.++...+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            357999999 59999999999999999999998876543221   1123321     11   245678889998877664


Q ss_pred             C
Q 021995          184 T  184 (304)
Q Consensus       184 ~  184 (304)
                      .
T Consensus        82 ~   82 (350)
T d1xgka_          82 Q   82 (350)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.22  E-value=0.019  Score=48.50  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcC
Q 021995          113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDR  148 (304)
Q Consensus       113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr  148 (304)
                      +.|.||++.|.|. +.||+++|+.|...|++|++..+
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            3599999999985 56999999999999999987544

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.18  E-value=0.037  Score=48.15  Aligned_cols=67  Identities=13%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc---------------CceecCCHHhhcCcCCEEE
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVV  178 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~---------------g~~~~~~l~ell~~aDvVi  178 (304)
                      -.||+|.|.| .|-||+.+++.|...|++|.+..|+..+.......               .+....++++++..+|+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            3699999998 58899999999998899999887754222211110               0111235567889999887


Q ss_pred             EcC
Q 021995          179 VNT  181 (304)
Q Consensus       179 ~~~  181 (304)
                      .+.
T Consensus        89 ~~a   91 (342)
T d1y1pa1          89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             hhc
Confidence            554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.12  E-value=0.026  Score=47.47  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=32.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ..|+|.|||.|..|-..|..|+..|++|++++.+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.034  Score=46.55  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|++.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            389999988885 77999999999999999999998753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.07  E-value=0.028  Score=48.71  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=33.5

Q ss_pred             cCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          115 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       115 L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      ..||+|.|.| .|-||+.+++.|...|++|.+++|+..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4789999999 689999999999999999999998653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.01  E-value=0.024  Score=45.57  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=42.1

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCe--EEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCN--LLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~--V~~~dr~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVi~~~p  182 (304)
                      +||.|.| .|.||+.+++.|...|++  |+...|++.+.... ..+++       ..+++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            5899999 699999999999988865  55555654221111 11111       12344567889999987654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.041  Score=48.22  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=28.1

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |.|.|.| .|-||+.+++.|...|++|++.||..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5667888 79999999999999999999999853

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.98  E-value=0.051  Score=45.64  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ||.+.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            566666675 5699999999999999999999864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.75  E-value=0.064  Score=41.64  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCCCChhHHH------hc-------CceecCCHHhhcCcCCE
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDPQLEK------ET-------GAKFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~~~~~~~~------~~-------g~~~~~~l~ell~~aDv  176 (304)
                      .+|.|+|. |.+|+.++..|...+.       ....++... ..+...      ..       ......+..+.+++||+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ-AMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG-GHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc-chhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            48999996 9999999998875332       122333321 111111      00       12334677889999999


Q ss_pred             EEEcCCC--Chh-hh-ccc--c----H----HHHhcCCCCCEEEEcCCCchhchHHH
Q 021995          177 VVVNTPL--TEK-TR-GMF--D----K----DRIAKMKKGVLIVNNARGAIMDTQAV  219 (304)
Q Consensus       177 Vi~~~p~--~~~-t~-~~i--~----~----~~l~~mk~g~ilVn~~rg~~vd~~aL  219 (304)
                      |+++.-.  .+. ++ .++  |    +    ..-+..+++++++.++.  .+|.-..
T Consensus        84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            9998632  221 11 111  1    1    12222466888888864  4665443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.49  E-value=0.037  Score=46.03  Aligned_cols=57  Identities=18%  Similarity=0.282  Sum_probs=41.1

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTP  182 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p  182 (304)
                      ++|.|.|. |-||+.+++.|...|++|++.||+....        .-..+++++++  +.|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~--------~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI--------TNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT--------TCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC--------CCHHHHHHHHHHcCCCEEEeecc
Confidence            47999996 9999999999999999999999864211        11123455554  4588775543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.40  E-value=0.045  Score=45.74  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEee-Ch--hhHHHHHHhccCCCeEEEEcCCC
Q 021995          114 DLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~--IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      -|.||++.|.|. |.  ||.++|+.|...|++|+..+++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            389999999996 54  99999999999999999988765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.40  E-value=0.044  Score=44.97  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=30.4

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ++|.|||.|..|-..|..|...|++|++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.26  E-value=0.061  Score=44.15  Aligned_cols=38  Identities=18%  Similarity=0.153  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      .-.+++|.|||.|..|-..|..|+..|++|++++++..
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            35789999999999999999999999999999997653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.023  Score=47.56  Aligned_cols=37  Identities=30%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC
Q 021995          114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK  150 (304)
Q Consensus       114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~  150 (304)
                      .|+.++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5899999999999999999999999998 488888653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.18  E-value=0.091  Score=45.65  Aligned_cols=66  Identities=20%  Similarity=0.126  Sum_probs=44.7

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNT  181 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVi~~~  181 (304)
                      .+++|.|.| .|-||+.+++.|...|++|+++|+..............       ....+.++++.+|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            678999998 79999999999999999999998754221111111111       1123345677899887654

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=92.17  E-value=0.29  Score=38.14  Aligned_cols=53  Identities=8%  Similarity=0.090  Sum_probs=41.7

Q ss_pred             hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995          128 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       128 IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~  180 (304)
                      +.++.+..+..+|+++.++.|..-........++....++++.++++|+|..-
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td   73 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAK   73 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeee
Confidence            88899999999999999999875433323334566678999999999999863

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.14  E-value=0.064  Score=41.63  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=42.4

Q ss_pred             CEEEEEe-eChhhHHHHHHhccC---C----CeEEEEcCCCCChhHHHh------c-------CceecCCHHhhcCcCCE
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPF---N----CNLLYHDRVKMDPQLEKE------T-------GAKFEEDLDTMLPKCDI  176 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~---G----~~V~~~dr~~~~~~~~~~------~-------g~~~~~~l~ell~~aDv  176 (304)
                      .+|.||| .|.+|+.+|..|...   |    ..+..+|.... .+.+..      .       ......+.++.++++|+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM-MGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc-hhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence            3899999 599999999988542   3    24667776432 111111      1       12234577889999999


Q ss_pred             EEEcCC
Q 021995          177 VVVNTP  182 (304)
Q Consensus       177 Vi~~~p  182 (304)
                      |+++..
T Consensus        83 VVitag   88 (154)
T d5mdha1          83 AILVGS   88 (154)
T ss_dssp             EEECCS
T ss_pred             EEEecc
Confidence            999863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.10  E-value=0.31  Score=38.52  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             CCEEEEEee-ChhhHHHHHHhcc---CCC----eEEEEcCCCCCh--h-HHHh--c-------CceecCCHHhhcCcCCE
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKP---FNC----NLLYHDRVKMDP--Q-LEKE--T-------GAKFEEDLDTMLPKCDI  176 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~---~G~----~V~~~dr~~~~~--~-~~~~--~-------g~~~~~~l~ell~~aDv  176 (304)
                      -.+|.|+|. |.||+.++-.|..   ||.    .+..+|......  + ..-+  .       .+....+..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            348999996 9999999988864   453    456677643211  1 1101  1       12334678899999999


Q ss_pred             EEEcCCC--Ch---------hhhcccc--HHHHhc-CCCCCEEEEcCCCchhchHHHHH
Q 021995          177 VVVNTPL--TE---------KTRGMFD--KDRIAK-MKKGVLIVNNARGAIMDTQAVVD  221 (304)
Q Consensus       177 Vi~~~p~--~~---------~t~~~i~--~~~l~~-mk~g~ilVn~~rg~~vd~~aL~~  221 (304)
                      |+++...  .+         .+..++.  .+.+.. .+++++++-++.  .+|..+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            9988632  22         1111110  112223 466787777765  588777654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.94  E-value=0.069  Score=46.22  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=32.1

Q ss_pred             CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      .|+|.|||.|..|-.+|..|+..|.+|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            58999999999999999999999999999997653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.90  E-value=0.048  Score=45.45  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCCh
Q 021995          114 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDP  153 (304)
Q Consensus       114 ~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~  153 (304)
                      .|.||++.|-|.+ .||+++|+.|...|++|++.+|+....
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            5899999999975 599999999999999999999876443

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.82  E-value=0.054  Score=45.99  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEeeC---hhhHHHHHHhccCCCeEEEEcCC
Q 021995          113 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G---~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      .+|+||++.|-|.+   .||+++|+.|...|++|++.+++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            46999999999986   59999999999999999988764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.11  Score=44.51  Aligned_cols=63  Identities=14%  Similarity=0.108  Sum_probs=41.7

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCC-ChhHHHhc-C-----ceecCCHHhhcCcCCEEEEc
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKET-G-----AKFEEDLDTMLPKCDIVVVN  180 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~~~~~~-g-----~~~~~~l~ell~~aDvVi~~  180 (304)
                      |+|.|.| .|-||+.+++.|...|++|+++|+... ..+..... .     ....+.++.++.++|+|+-+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            6899998 588999999999989999999986432 22111111 1     11123345566789988643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.43  E-value=0.059  Score=45.35  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=31.8

Q ss_pred             cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            68999888886 5599999999999999999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.22  E-value=0.13  Score=41.62  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=29.1

Q ss_pred             EEEEEeeChhhHHHHHHhc--cCCCeEEEEcCCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLK--PFNCNLLYHDRVKM  151 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~--~~G~~V~~~dr~~~  151 (304)
                      +|+|||.|..|-..|..|.  .+|++|++|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            8999999999999999884  47899999998653

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.18  E-value=0.076  Score=42.06  Aligned_cols=105  Identities=18%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-Cceec-CCH-HhhcCcCCEEEEcCCCChhhhccc---
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDL-DTMLPKCDIVVVNTPLTEKTRGMF---  191 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~-~~l-~ell~~aDvVi~~~p~~~~t~~~i---  191 (304)
                      .+|||=|||+||+.+.|.|..-+.+|.+.+... ..+....+ ..... ..+ .++-..-|.+++-    ...-.+.   
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~-~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~----g~~I~~~~~~   75 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVD----GKAIRATAVK   75 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEECSSEEEET----TEEEEEECCS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCc-chhhhhheeecccccCccccccccccceeEec----ceeEEEEecC
Confidence            479999999999999999887788988877532 33322211 00000 001 1122233444431    1111111   


Q ss_pred             cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995          192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  227 (304)
Q Consensus       192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~  227 (304)
                      +.+.+..-+-|.-+|==+.|.-.+.+.+...|+.|-
T Consensus        76 ~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          76 DPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             SGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             ChHHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence            223333334455555566788888888888888663

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.13  E-value=0.072  Score=42.74  Aligned_cols=64  Identities=19%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             CEEEEEee-ChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCceecCCH----HhhcCcCCEEEEcCCCC
Q 021995          118 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDL----DTMLPKCDIVVVNTPLT  184 (304)
Q Consensus       118 ~~vgIIG~-G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~~~~~l----~ell~~aDvVi~~~p~~  184 (304)
                      |+|.|.|. |-||+.+++.|...|.  +|....|++....  ...... ..++    +.+....|.|+.|+..+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~--~~~~~~-~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH--PRLDNP-VGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC--TTEECC-BSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc--cccccc-ccchhhhhhccccchheeeeeeeee
Confidence            79999996 9999999999988887  5666666542211  111011 1122    23445579998886543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.13  Score=42.50  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +..+|.|||.|.-|-..|..|...|++|+++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34579999999999999999999999999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.10  E-value=0.089  Score=41.68  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             EEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK  150 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~  150 (304)
                      +|.|||.|..|-..|..|+..|+ +|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            58999999999999999999997 599999754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=90.06  E-value=0.24  Score=42.83  Aligned_cols=130  Identities=11%  Similarity=0.086  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC----CC-------eEE
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLL  144 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~----G~-------~V~  144 (304)
                      +|=-+++.+++.+|-                    .+..|...+|.|.|.|.-|-.+|+.+...    |.       +++
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (308)
T d1o0sa1           4 TASVIVAGLLTCTRV--------------------TKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY   63 (308)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE
Confidence            455677888888872                    24468889999999999999999887543    32       488


Q ss_pred             EEcCCCCC-h-----hHHH-hc--CceecCCHHhhcCcC--CEEEEcCCCChhhhccccHHHHhcC---CCCCEEEEcCC
Q 021995          145 YHDRVKMD-P-----QLEK-ET--GAKFEEDLDTMLPKC--DIVVVNTPLTEKTRGMFDKDRIAKM---KKGVLIVNNAR  210 (304)
Q Consensus       145 ~~dr~~~~-~-----~~~~-~~--g~~~~~~l~ell~~a--DvVi~~~p~~~~t~~~i~~~~l~~m---k~g~ilVn~~r  210 (304)
                      .+|+...- .     ...+ .+  ......++.++++..  ++++-+..    ..++++++.++.|   .+..++.=.|.
T Consensus        64 ~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s~----~~g~ft~evv~~Ma~~~~~PIIFaLSN  139 (308)
T d1o0sa1          64 LMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGAST----VRGAFNEEVIRAMAEINERPIIFALSN  139 (308)
T ss_dssp             EEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSS----CTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEeccc----ccCCCCHHHHHHHHhhCCCcEEEEccC
Confidence            88876310 0     0000 00  011223566655533  45554432    2356777777655   48889999988


Q ss_pred             CchhchHHHHHHHH--cCCce
Q 021995          211 GAIMDTQAVVDACS--SGHIA  229 (304)
Q Consensus       211 g~~vd~~aL~~aL~--~g~i~  229 (304)
                      ...--+-.-.++.+  .|...
T Consensus       140 Ptp~~E~~~eda~~~t~G~ai  160 (308)
T d1o0sa1         140 PTSKAECTAEEAYTFTNGAAL  160 (308)
T ss_dssp             SGGGCSSCHHHHHHTTTSCCE
T ss_pred             CCCCCCCCHHHHHhhccCcEE
Confidence            87655444444433  44444

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.03  E-value=0.13  Score=37.13  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      ..+..||+|+|||.|.-|..+|.-|...+-+++...+.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            34689999999999999999999998887776655543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.87  E-value=0.79  Score=34.48  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             EEEEEe-eChhhHHHHHHhc-cCCCeEE-EEcCCCCChhHHHhcCceecCCHHhh-cCcCCEEEEcCCCChhhhccccHH
Q 021995          119 TVGTVG-CGRIGKLLLQRLK-PFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDKD  194 (304)
Q Consensus       119 ~vgIIG-~G~IG~~lA~~l~-~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~el-l~~aDvVi~~~p~~~~t~~~i~~~  194 (304)
                      ||+|+| .|+||+.+++.+. .-++++. ++|+..               ++..+ ...+|+|+-.... +.+...+   
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS~p-~~~~~~~---   61 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFTHP-DVVMGNL---   61 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECCCT-TTHHHHH---
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcccH-HHHHHHH---
Confidence            699999 6999999999765 5678855 666532               11122 2468998855431 1222221   


Q ss_pred             HHhcCCCCCEEEEcCCCchhchHHHH
Q 021995          195 RIAKMKKGVLIVNNARGAIMDTQAVV  220 (304)
Q Consensus       195 ~l~~mk~g~ilVn~~rg~~vd~~aL~  220 (304)
                       -..++.|.-+|-...|-.-++.+.+
T Consensus        62 -~~~~~~~~~~ViGTTG~~~~~~~~l   86 (135)
T d1yl7a1          62 -EFLIDNGIHAVVGTTGFTAERFQQV   86 (135)
T ss_dssp             -HHHHHTTCEEEECCCCCCHHHHHHH
T ss_pred             -HHHHhcCCCEEEeccccchhHHHHH
Confidence             1123456667766677544333333

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=89.81  E-value=0.12  Score=40.97  Aligned_cols=30  Identities=27%  Similarity=0.543  Sum_probs=26.5

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDR  148 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr  148 (304)
                      +|||=|||+||+.+.|.+...+.+|++.+-
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            799999999999999999877888887764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.38  E-value=0.26  Score=37.54  Aligned_cols=39  Identities=15%  Similarity=0.087  Sum_probs=33.3

Q ss_pred             cccCCCEEEEE--eeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          113 YDLEGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       113 ~~L~g~~vgII--G~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      +...++.+.|+  |-|.||-++|..|..+|++|+++.+.+.
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            34567788887  8899999999999999999999998654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.10  E-value=0.13  Score=40.45  Aligned_cols=31  Identities=23%  Similarity=0.134  Sum_probs=29.3

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |.|||.|..|-..|..|...|.+|++++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7999999999999999999999999999865

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.03  E-value=0.19  Score=41.26  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .||+|.|.|. |.||+++|+.|...|++|...|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4899999996 6699999999999999999988754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.02  E-value=0.17  Score=43.55  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~  150 (304)
                      |+|+|||.|..|-.+|..|+..|  .+|++++++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            68999999999999999886544  6999999864

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=88.89  E-value=0.68  Score=39.67  Aligned_cols=123  Identities=11%  Similarity=0.080  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC----C-------CeEE
Q 021995           76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF----N-------CNLL  144 (304)
Q Consensus        76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~----G-------~~V~  144 (304)
                      +|=-+++.+|+.+|-                    .+..|...+|.|.|.|..|-.+++.+...    |       -+++
T Consensus         4 TaaV~lAglinAlki--------------------~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (298)
T d1gq2a1           4 TASVAVAGLLAALRI--------------------TKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW   63 (298)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEE
Confidence            455677888888872                    24578999999999999999999888643    3       2588


Q ss_pred             EEcCCCC---Ch----hHHHhc--CceecCCHHhhcCc--CCEEEEcCCCChhhhccccHHHHh---cCCCCCEEEEcCC
Q 021995          145 YHDRVKM---DP----QLEKET--GAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMFDKDRIA---KMKKGVLIVNNAR  210 (304)
Q Consensus       145 ~~dr~~~---~~----~~~~~~--g~~~~~~l~ell~~--aDvVi~~~p~~~~t~~~i~~~~l~---~mk~g~ilVn~~r  210 (304)
                      .+|+...   ..    ...+.+  ......+++++.+.  .++++-+..    .-+++.++.++   .|.+..++.=.|.
T Consensus        64 l~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFaLSN  139 (298)
T d1gq2a1          64 MVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFALSN  139 (298)
T ss_dssp             EEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEEccC
Confidence            8887531   00    000111  01122456666543  556655432    12667777665   5668899999998


Q ss_pred             CchhchHHHHHH
Q 021995          211 GAIMDTQAVVDA  222 (304)
Q Consensus       211 g~~vd~~aL~~a  222 (304)
                      ...--|-.-.++
T Consensus       140 Pt~~~E~~~~~a  151 (298)
T d1gq2a1         140 PTSKAECTAEQL  151 (298)
T ss_dssp             SGGGCSSCHHHH
T ss_pred             CCCcCCCCHHHH
Confidence            876544433333

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.73  E-value=0.12  Score=42.80  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=25.9

Q ss_pred             CEEE-EEee-ChhhHHHHHHhccCCCe-------EEEEcCCC
Q 021995          118 KTVG-TVGC-GRIGKLLLQRLKPFNCN-------LLYHDRVK  150 (304)
Q Consensus       118 ~~vg-IIG~-G~IG~~lA~~l~~~G~~-------V~~~dr~~  150 (304)
                      |+|. |-|. +.||+++|+.|...|++       |+.++|+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            4554 4465 66999999999988987       88888864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.70  E-value=0.097  Score=43.78  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +|.|||.|..|-.+|..|+..|.+|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.66  E-value=0.15  Score=37.17  Aligned_cols=34  Identities=21%  Similarity=0.040  Sum_probs=28.6

Q ss_pred             CCEEEEEeeChhhHHHHHHh---ccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRL---KPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l---~~~G~~V~~~dr~~  150 (304)
                      .+++.|||.|.+|-++|..+   ...|.+|..+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            47999999999999999764   45699999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.29  E-value=0.15  Score=42.01  Aligned_cols=32  Identities=22%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      -|.|||.|.+|..+|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999854

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.87  E-value=0.16  Score=39.29  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=26.8

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEE
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH  146 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~  146 (304)
                      .+++|.|||-|.+|-++|..|+.+|.+|.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4679999999999999999999999875444

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=87.81  E-value=0.21  Score=42.25  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=27.0

Q ss_pred             EEEEEe-eChhhHHHHHHhccCCCeEEEEcCC
Q 021995          119 TVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       119 ~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      +|.|.| .|-||+.+++.|...|++|+++|+-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            677776 6999999999999889999999853

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.62  E-value=0.22  Score=39.28  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             EEEEEeeChhhHHHHHHhc---cCCCeEEEEcC
Q 021995          119 TVGTVGCGRIGKLLLQRLK---PFNCNLLYHDR  148 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~---~~G~~V~~~dr  148 (304)
                      +|||=|||+||+.+.|.+.   ..+.+|++.+-
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            7999999999999999875   34578887764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=87.51  E-value=0.3  Score=41.82  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=28.4

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      ++|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            4789998 5999999999999999999999863

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.47  E-value=0.22  Score=40.63  Aligned_cols=34  Identities=12%  Similarity=0.010  Sum_probs=30.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM  151 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~  151 (304)
                      .+|.|||.|..|-.+|..|+..|. +|.++++++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            379999999999999999999996 8999998653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.17  E-value=0.21  Score=39.51  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             EEEEEeeChhhHHHHHHhcc---CCCeEEEEcC
Q 021995          119 TVGTVGCGRIGKLLLQRLKP---FNCNLLYHDR  148 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~---~G~~V~~~dr  148 (304)
                      +|||=|||+||+.+.|.+..   ...+|++.+-
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            79999999999999997653   3367777664

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.00  E-value=0.37  Score=36.55  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=27.9

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      .||.|||.|.+|-++|..|+. +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999999976 77999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=0.24  Score=39.50  Aligned_cols=30  Identities=13%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      |.|||.|..|...|..+..+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999874

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.68  E-value=1.1  Score=36.63  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CCEEEEEee-ChhhHHHHHHhc---cCCCeEEEEcCCCCChh
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDPQ  154 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~---~~G~~V~~~dr~~~~~~  154 (304)
                      -|||.|-|. +.||+++|+.|.   ..|++|+..+|+....+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~   43 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK   43 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            478989986 679999999874   56999999999765443

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=86.41  E-value=0.54  Score=38.47  Aligned_cols=55  Identities=9%  Similarity=0.043  Sum_probs=34.7

Q ss_pred             eChhhHHHHHHhccCCCeEEEEcCCC--CChhHHHhcCceecCC-------HHhhcCcCCEEEEcCC
Q 021995          125 CGRIGKLLLQRLKPFNCNLLYHDRVK--MDPQLEKETGAKFEED-------LDTMLPKCDIVVVNTP  182 (304)
Q Consensus       125 ~G~IG~~lA~~l~~~G~~V~~~dr~~--~~~~~~~~~g~~~~~~-------l~ell~~aDvVi~~~p  182 (304)
                      -|.||.++|+.+..+|++|+++.-..  ..+.   ......+.+       +.+.++++|+++.+.-
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~---~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAA   94 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTLVSGPVSLPTPP---FVKRVDVMTALEMEAAVNASVQQQNIFIGCAA   94 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECSCCCCCCT---TEEEEECCSHHHHHHHHHHHGGGCSEEEECCB
T ss_pred             cHHHHHHHHHHHHHcCCchhhhhcccccCccc---ccccceehhhHHHHHHHHhhhccceeEeeeec
Confidence            59999999999999999998775322  1111   111111222       2345678998887643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.36  E-value=0.36  Score=43.32  Aligned_cols=91  Identities=21%  Similarity=0.388  Sum_probs=58.9

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhc-----------Cc-----------ee--cCCHHhh
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKET-----------GA-----------KF--EEDLDTM  170 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~-----------g~-----------~~--~~~l~el  170 (304)
                      .|+++.=||+|. |+.+...++.+|+ +|+++|.++...+.++..           +.           ..  ....++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            467888888884 6666666667777 799999876433333211           10           00  1223467


Q ss_pred             cCcCCEEEEcC-CCChhhhccccHHHHhcCCCCCEEEEc
Q 021995          171 LPKCDIVVVNT-PLTEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       171 l~~aDvVi~~~-p~~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                      +..+|+|++.. -..++....+ .+.+..||||+.||-.
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            88899998753 2344544454 5788999999999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.26  E-value=0.17  Score=39.75  Aligned_cols=35  Identities=11%  Similarity=0.050  Sum_probs=31.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +++.|.|||-|..|-..|..+..+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            45689999999999999999999999999998643

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=0.28  Score=41.92  Aligned_cols=33  Identities=27%  Similarity=0.205  Sum_probs=27.7

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~  150 (304)
                      ++|.|.| .|-||+.+++.|...| ++|++.|+..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            4788997 5899999999998888 5899998754

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.87  E-value=0.29  Score=41.26  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=29.5

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |+|.|.| .|-||+.+++.|...|++|++++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6889998 58999999999998899999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.28  Score=41.63  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      .|.|||.|..|-.+|+.|+..|.+|++++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999997653

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=85.37  E-value=0.35  Score=38.00  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=27.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccC-CCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~dr~~  150 (304)
                      .+|||=|||+||+.+.|.+... .++|++.+...
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            3799999999999999988654 57888887543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.23  E-value=0.31  Score=41.63  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      ....|.|||.|..|-.+|..|+..|.+|+++++.+
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            34579999999999999999999999999999754

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.23  E-value=0.25  Score=43.22  Aligned_cols=31  Identities=26%  Similarity=0.235  Sum_probs=28.1

Q ss_pred             CCEEEEEe-eChhhHHHHHHhccCCCeEEEEc
Q 021995          117 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD  147 (304)
Q Consensus       117 g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~d  147 (304)
                      |++|.|.| .|-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            78999998 58899999999999999999997

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.22  E-value=0.26  Score=39.94  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=30.2

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD  152 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~  152 (304)
                      +|++.|-|. +.||+++|+.|...|++|++.+++...
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            367777775 789999999999999999999987643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=0.21  Score=40.74  Aligned_cols=39  Identities=13%  Similarity=0.053  Sum_probs=30.0

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE  156 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~  156 (304)
                      .|.+|..+|||. |+ .+..|...|++|+++|.++...+.+
T Consensus        45 ~~~rvLd~GCG~-G~-~a~~LA~~G~~V~gvD~S~~ai~~a   83 (229)
T d2bzga1          45 SGLRVFFPLCGK-AV-EMKWFADRGHSVVGVEISELGIQEF   83 (229)
T ss_dssp             CSCEEEETTCTT-CT-HHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCC-cH-HHHHHHhCCCcEEEEeCCHHHHHHH
Confidence            678999999998 54 4566667899999999876444433

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=84.91  E-value=0.32  Score=38.48  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=24.6

Q ss_pred             CEEEEEeeChhhHHHHHHhcc----CCCeEEEEcC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKP----FNCNLLYHDR  148 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~----~G~~V~~~dr  148 (304)
                      .+|||=|||+||+.+.|.+..    -..+|++.+.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd   36 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence            379999999999999998753    2467777765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.87  E-value=0.31  Score=40.30  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |.|||.|.+|-.+|..|...|.+|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=84.64  E-value=0.29  Score=40.96  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             EEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK  150 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~  150 (304)
                      .|.|||.|.+|-.+|..|...|. +|++++++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999998896 599999864

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.59  E-value=0.46  Score=39.21  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             eeChhhHHHHHHhccCCCeEEEEcC
Q 021995          124 GCGRIGKLLLQRLKPFNCNLLYHDR  148 (304)
Q Consensus       124 G~G~IG~~lA~~l~~~G~~V~~~dr  148 (304)
                      |-+.||+++|+.|...|++|++.++
T Consensus         9 as~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           9 ASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3577999999999999999987544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.53  E-value=0.21  Score=40.08  Aligned_cols=34  Identities=12%  Similarity=0.043  Sum_probs=29.2

Q ss_pred             CEEEEEeeChhhHHHHHHhccCC-------CeEEEEcCCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM  151 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G-------~~V~~~dr~~~  151 (304)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999987655       68999998653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.35  E-value=0.34  Score=39.25  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=29.6

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      |.|||.|..|-..|..|...|++|+++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999998654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.18  E-value=0.62  Score=33.71  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=27.5

Q ss_pred             CCEEEEEeeChhhHHHHHHhccC---CCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l~~~---G~~V~~~dr~~  150 (304)
                      .+++.|||-|.+|-++|..+..+   |.+|+.+.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            47999999999999999766544   56799888754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.17  E-value=0.31  Score=40.78  Aligned_cols=31  Identities=23%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |.|||.|..|-..|..|+..|++|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.91  E-value=0.35  Score=39.49  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995          117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM  151 (304)
Q Consensus       117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~  151 (304)
                      +.+|.|.|. |.||+++|+.|...|++|+..|++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            346878875 78999999999999999999998753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.58  E-value=0.42  Score=35.75  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             CCEEEEEeeChhhHHHHHHh----ccCCCeEEEEcCCC
Q 021995          117 GKTVGTVGCGRIGKLLLQRL----KPFNCNLLYHDRVK  150 (304)
Q Consensus       117 g~~vgIIG~G~IG~~lA~~l----~~~G~~V~~~dr~~  150 (304)
                      ++++.|||-|.+|-++|..|    +..|.+|+.+.+.+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            67999999999999998766    46799999988754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.58  E-value=0.38  Score=38.36  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=29.2

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      -|.|||.|..|...|..+...|++|.+++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999998654

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.48  E-value=5  Score=31.70  Aligned_cols=160  Identities=10%  Similarity=0.050  Sum_probs=91.3

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCeEEE-EcC---CCCC---hhHHHhcCceec-------C-----CHHhhc--CcCCE
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDR---VKMD---PQLEKETGAKFE-------E-----DLDTML--PKCDI  176 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~-~dr---~~~~---~~~~~~~g~~~~-------~-----~l~ell--~~aDv  176 (304)
                      ++|.++|.+..|..+.+.|...|++|.+ +..   ....   ...+.+.+....       .     ++-+.+  .+.|+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~Dl   80 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAEL   80 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCCc
Confidence            5899999999999999999888999764 321   1111   122333343210       0     111112  35899


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCc-hhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995          177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  255 (304)
Q Consensus       177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~-~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l  255 (304)
                      ++++.-     ..++.++.++..+.|.+=+..|.=+ -==..-+..++.+|.-. .+.-++.-.+--+.-|.+....+-+
T Consensus        81 iv~~~~-----~~ii~~~~l~~~~~g~iN~H~slLP~yrG~~pi~wai~~g~~~-~GvTih~~~~~~D~G~Ii~q~~~~i  154 (203)
T d2bw0a2          81 NVLPFC-----SQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKK-GGFSIFWADDGLDTGDLLLQKECEV  154 (203)
T ss_dssp             EEESSC-----SSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHTTCSE-EEEEEEECCSSSSCSCEEEEEEEEC
T ss_pred             eEEeec-----chhhhhhhhhhhhhHhhhhhhcccccccccceeeeeecccccc-cCceeEEeccccccchhheeecccC
Confidence            887652     3588889999888776656655211 01123466677777533 2344444333333345555455666


Q ss_pred             ccCCCcCCHHHH-HH-----HHHHHHHHHHHHHcCCC
Q 021995          256 TPHVSGTTIDAQ-LR-----YAAGVKDMLDRYFKGED  286 (304)
Q Consensus       256 TPHia~~t~e~~-~~-----~~~~~~~~l~~~~~g~~  286 (304)
                      .|+-   |.+.. .+     ....+.+.+..+.+|+-
T Consensus       155 ~~~d---t~~~l~~k~l~~~~~~~~~~~l~~i~~g~~  188 (203)
T d2bw0a2         155 LPDD---TVSTLYNRFLFPEGIKGMVQAVRLIAEGKA  188 (203)
T ss_dssp             CTTC---CHHHHHHHTTTHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6653   33332 22     23467778888888853

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=83.30  E-value=0.34  Score=39.08  Aligned_cols=93  Identities=13%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCCEEEEEee--ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh----cCc----ee-cCCHHh-hcCcCCEEEEcCCC
Q 021995          116 EGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGA----KF-EEDLDT-MLPKCDIVVVNTPL  183 (304)
Q Consensus       116 ~g~~vgIIG~--G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----~g~----~~-~~~l~e-ll~~aDvVi~~~p~  183 (304)
                      .+.+|.=+|+  |.+...+++.+..-|++|+++|.++.-.+.+++    .+.    .. ..+..+ -...+|++++..-+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            5678999999  666777888877779999999998654444433    121    11 112211 23456776654221


Q ss_pred             ---ChhhhccccHHHHhcCCCCCEEEEc
Q 021995          184 ---TEKTRGMFDKDRIAKMKKGVLIVNN  208 (304)
Q Consensus       184 ---~~~t~~~i~~~~l~~mk~g~ilVn~  208 (304)
                         +++-..-+-++....||||..+|..
T Consensus       119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         119 QFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             GGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHhCCCCceeecc
Confidence               1111112235677889999988753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.13  E-value=0.38  Score=37.83  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=28.0

Q ss_pred             CEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCC
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~  150 (304)
                      +||.|||.|.+|-++|..|+..  +.+|+.+++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999765  56799888653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.98  E-value=0.34  Score=38.11  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=30.5

Q ss_pred             CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      +.++|.|||-|..|-..|..+..+|++|+++++.
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            3468999999999999999999999999999854

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.94  E-value=0.32  Score=38.62  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=28.7

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |.|||.|..|...|..+..+|.+|+++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998753

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.86  E-value=0.4  Score=39.22  Aligned_cols=33  Identities=15%  Similarity=0.102  Sum_probs=27.0

Q ss_pred             CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      |.|.|-| .+.||+++|+.|...|++|++.|++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3455666 46799999999999999999998864

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=82.45  E-value=0.77  Score=35.98  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=24.7

Q ss_pred             EEEEEeeChhhHHHHHHhcc-CCCeEEEEcC
Q 021995          119 TVGTVGCGRIGKLLLQRLKP-FNCNLLYHDR  148 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr  148 (304)
                      +|||=|||+||+.+.|.+.. -..+|++.+-
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            89999999999999997763 3578877754

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.23  E-value=0.8  Score=35.73  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=25.3

Q ss_pred             EEEEEeeChhhHHHHHHhcc-CCCeEEEEcC
Q 021995          119 TVGTVGCGRIGKLLLQRLKP-FNCNLLYHDR  148 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr  148 (304)
                      +|||=|||+||+.+.+.+.. -..+|++.+-
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            79999999999999998864 3678887764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.23  E-value=0.48  Score=37.68  Aligned_cols=37  Identities=24%  Similarity=0.470  Sum_probs=31.2

Q ss_pred             cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      .++.||+|.|||.|.-|..+|..+...+.+++..-++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4689999999999999999999998778876665544

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.20  E-value=1  Score=33.14  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC
Q 021995          112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK  150 (304)
Q Consensus       112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~  150 (304)
                      +...+||+|.|||-|..+-.-|..|..+.-+|+.+-|..
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            344589999999999999999999999999999888754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.94  E-value=0.57  Score=35.88  Aligned_cols=30  Identities=17%  Similarity=-0.034  Sum_probs=27.9

Q ss_pred             EEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      |.|||-|.+|-..|..+..+|++|+++++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.79  E-value=0.57  Score=37.51  Aligned_cols=31  Identities=19%  Similarity=0.223  Sum_probs=28.7

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      -|.|||.|..|...|..+..+|.+|.+++..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3789999999999999999999999999854

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=81.65  E-value=0.58  Score=39.45  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             EEEEEeeChhhHHHHHHhc-----cCCCeEEEEcCCCC
Q 021995          119 TVGTVGCGRIGKLLLQRLK-----PFNCNLLYHDRVKM  151 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~-----~~G~~V~~~dr~~~  151 (304)
                      -|.|||.|..|-.+|..|.     ..|.+|+++++.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            4899999999999999984     57999999998653

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=81.20  E-value=0.6  Score=36.70  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=25.3

Q ss_pred             EEEEEeeChhhHHHHHHhcc-CCCeEEEEcC
Q 021995          119 TVGTVGCGRIGKLLLQRLKP-FNCNLLYHDR  148 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr  148 (304)
                      +|||=|||+||+.+.|.+.. -..+|.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            79999999999999998864 3678887775

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.89  E-value=1.1  Score=34.13  Aligned_cols=51  Identities=12%  Similarity=0.168  Sum_probs=36.5

Q ss_pred             hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh
Q 021995          128 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  185 (304)
Q Consensus       128 IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~  185 (304)
                      -+..++..++.+|++|..+..-+...+...       ..+++.++++|+|+++--...
T Consensus        28 N~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~-------~~l~~~~~~~DliittGG~s~   78 (155)
T d2ftsa3          28 NRSTLLATIQEHGYPTINLGIVGDNPDDLL-------NALNEGISRADVIITSGGVSM   78 (155)
T ss_dssp             HHHHHHHHHHTTTCCEEEEEEECSSHHHHH-------HHHHHHHHHCSEEEEESCCSS
T ss_pred             hHHHHHHHhcccccceEEEEEecCchhHHH-------HHHHHhhcccCEEEEeccccC
Confidence            467899999999999987765444444332       246777889999998765443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.81  E-value=0.083  Score=42.59  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.5

Q ss_pred             CEEEEEeeChhhHHHHHHhccCCCe
Q 021995          118 KTVGTVGCGRIGKLLLQRLKPFNCN  142 (304)
Q Consensus       118 ~~vgIIG~G~IG~~lA~~l~~~G~~  142 (304)
                      ++|.|||.|.+|-..|..|...|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            4799999999999999999887864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.42  E-value=0.45  Score=36.13  Aligned_cols=29  Identities=28%  Similarity=0.329  Sum_probs=26.4

Q ss_pred             cCCCEEEEEeeChhhHHHHHHhccCCCeE
Q 021995          115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL  143 (304)
Q Consensus       115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V  143 (304)
                      -.|++|.|||.|.+|..+|..+...|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            46899999999999999999999999864

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.21  E-value=0.56  Score=39.98  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=30.0

Q ss_pred             CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCC
Q 021995          116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      .-|+|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            457899987 6999999999999999999999863

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.11  E-value=0.48  Score=37.73  Aligned_cols=31  Identities=16%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             EEEEEeeChhhHHHHHHhccCCCeEEEEcCC
Q 021995          119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV  149 (304)
Q Consensus       119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~  149 (304)
                      -|.|||.|..|...|..++.+|.+|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5899999999999999999999999999864

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.01  E-value=0.59  Score=38.58  Aligned_cols=38  Identities=18%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             ccCCCEEEEEee-ChhhHHHHHHhcc---CCCeEEEEcCCCC
Q 021995          114 DLEGKTVGTVGC-GRIGKLLLQRLKP---FNCNLLYHDRVKM  151 (304)
Q Consensus       114 ~L~g~~vgIIG~-G~IG~~lA~~l~~---~G~~V~~~dr~~~  151 (304)
                      .|.||.+.|-|. +.||+++|+.|..   .|++|+..+|+..
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~   44 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES   44 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH
Confidence            478887777786 5699999999853   6999999998653