Citrus Sinensis ID: 022330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MSSSFTGSFGDDDFMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKHNPPPHMNPKPPPPPQTEPTKDAKTSPAVGSGTATSKPAAPATPKGVAAA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHccccHHHccccccEEccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHcccccccccccccEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msssftgsfgdddfmaydprlasqgfnssfsqfegdsvkdsagdsspifssqsygagdevfssnplpdtpsppsiyaagggfssfsperngksfgggfgaeddsilppptempaeegFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELipyevpaiekrgkkkdqekkkpsiiviqgpkpgkptdlSRMRQILVKLkhnppphmnpkpppppqteptkdaktspavgsgtatskpaapatpkgvaaa
Flexible Loop (DISEMBL)
msssftgsfgdDDFMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIrleqkekkeREMLREIIEEAEQYKVEFYRKRALAvennkasnrekEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAiekrgkkkdqekkkpsiiviqgpkpgkptdlSRMRQILVKLkhnppphmnpKPPPPPQTEPTKDAKTSPAVGSGtatskpaapatpkgvaaa
Low Complexity Region (SEG)
MsssftgsfgdddfMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEkrgkkkdqekkkPSIIVIQGPKPGKPTDLSRMRQILVKLkhnppphmnpkpppppQTEPTKDAKTSPAVGsgtatskpaapatpkgvaaa
Disordered region (IsUnstruct)
************************************************************************************************************************************************IIEEAEQYKVEFYRKRALAV***********KLFLASWEKFHGEAEKNYWKAIAELIPYEVPAI*******************************************************************************************
Disordered Region (DISOPRED)
******G****DDFM***********************KDSAGDSSP*************************************************************************REWRR*N************************YKVEFYR*********************************NYWKAIAELIPYE*********************************LSRMRQILVKLKH*************************************************
Disordered Region (DISEMBL)
MSSSFTGSFGDDDFMAYDPRLASQGFNSSFSQF***********SSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEK***********PSIIVIQGPKPGKPTDLSRMRQILVKLKHNPPPHM*******************************************
Disordered Region (DISPRO)
************DFMAYDPR************************************G****SSNP*****SPPSIYAAG***S***************GAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKHNPPPH********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSFTGSFGDDDFMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKHNPPPHMNPKPPPPPQTEPTKDAKTSPAVGSGTATSKPAAPATPKGVAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
F4J5M9	258	Clathrin light chain 3 OS	yes	no	0.719	0.833	0.542	1e-63
O04209	258	Clathrin light chain 2 OS	no	no	0.789	0.914	0.546	4e-59
Q5Z402	291	Clathrin light chain 2 OS	yes	no	0.578	0.594	0.579	3e-45
Q7XKE9	301	Clathrin light chain 1 OS	no	no	0.558	0.554	0.617	3e-45
Q9SKU1	338	Clathrin light chain 1 OS	no	no	0.501	0.443	0.657	8e-44
Q6Z3A8	363	Clathrin light chain 3 OS	no	no	0.525	0.432	0.563	9e-44
P08082	229	Clathrin light chain B OS	yes	no	0.508	0.663	0.238	0.0003
Q6IRU5	229	Clathrin light chain B OS	no	no	0.508	0.663	0.238	0.0004
P09497	229	Clathrin light chain B OS	yes	no	0.575	0.751	0.251	0.0006

>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2 SV=1

 Score =  243 bits (621), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/260 (54%), Positives = 165/260 (63%), Gaps = 45/260 (17%)

Query: 13  DFMAYDPRLASQGFNSSFSQFEGDSVKDS---AGDSSPIFSSQSYGAGDEVFSSNPLPDT 69
           +F AY+ R  SQ F+SSFS F+    K+S    GDSS                  P P+T
Sbjct: 28  NFTAYESRFQSQRFDSSFSNFDSQPEKESDLPCGDSS------------------PRPET 69

Query: 70  PSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAI 129
            SPPSI                      F   +DSILPPP+ M  EEGFALREWRR NA+
Sbjct: 70  QSPPSI--------------------NSFDDTNDSILPPPSAMEKEEGFALREWRRLNAL 109

Query: 130 RLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEA 189
           RLE+KEK+E+EM+++I+E AEQYK EFY KR + +ENNK  NREKEK FL + EKF+ EA
Sbjct: 110 RLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEA 169

Query: 190 EKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLK 249
           +KN WKAIAELIP EVP IE RG K    KK  +I VIQGPKPGKPTDLSRMRQ+L KLK
Sbjct: 170 DKNNWKAIAELIPREVPVIENRGNK----KKTATITVIQGPKPGKPTDLSRMRQVLTKLK 225

Query: 250 HNPPPHMNPKPPPPPQTEPT 269
           HNPP HM PK P P   +P 
Sbjct: 226 HNPPTHMKPKLPSPSGADPN 245

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1

 Score =  228 bits (581), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/258 (54%), Positives = 178/258 (68%), Gaps = 22/258 (8%)

Query: 30  FSQFEGDS---VKDSAGDSSPIFSSQSYGAGDEVFSS--NPLPDTPSPPSIYAAGGGFSS 84
            S FE DS   + D A +S P+  S S+ A D  FS+    L    S   ++AA    S 
Sbjct: 1   MSAFEDDSFVILNDDASESVPV--SGSFDATDS-FSAFDGSLQVEDSVDDVFAAPS--SD 55

Query: 85  FSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLRE 144
           +    NG    G  G  D  ILPPP+EM ++EGFALREWRRQNAI+LE+KEK+E+E+L++
Sbjct: 56  YGAYSNGDGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQ 115

Query: 145 IIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYE 204
           IIEEA+QYK EF++K  +  ENNKA+NREKEKL+L + EKF+ E+ KNYWKAIAEL+P E
Sbjct: 116 IIEEADQYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKE 175

Query: 205 VPAIEK-RGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKHNPPPHMNPKPPPP 263
           VP IEK RGKK+ Q+ KKP++ VIQGPKPGKPTDL+RMRQILVKLKHNPP H+     PP
Sbjct: 176 VPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPP 235

Query: 264 -----------PQTEPTK 270
                      P+T+PT+
Sbjct: 236 SEEAAAPPKNVPETKPTE 253

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica GN=Os06g0731800 PE=2 SV=1

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 134/188 (71%), Gaps = 15/188 (7%)

Query: 67  PDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDS---ILPPPTEMPAEEGFALREW 123
           PD PSP  +           PE NG      F A D+    +LPPP +M A+EGF LREW
Sbjct: 49  PDAPSPFGM-----------PEANGSLHDDPFAAPDNDNGPVLPPPNQMGADEGFLLREW 97

Query: 124 RRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWE 183
           RRQNAI LE+KEKKE+EM  +II +A+++K  F  KR L VE +K  NRE+EKL+LA+ E
Sbjct: 98  RRQNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQE 157

Query: 184 KFHGEAEKNYWKAIAELIPYEVPAIEKRG-KKKDQEKKKPSIIVIQGPKPGKPTDLSRMR 242
           KFH  A+K YWKAI+ELIP+E+  IEKRG KK   ++KKP I+VIQGPKPGKPTD+SRMR
Sbjct: 158 KFHAGADKQYWKAISELIPHEIANIEKRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMR 217

Query: 243 QILVKLKH 250
           QIL+KLKH
Sbjct: 218 QILLKLKH 225

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica GN=Os04g0679100 PE=2 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/178 (61%), Positives = 129/178 (72%), Gaps = 11/178 (6%)

Query: 75  IYAAGGGFSS--FSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLE 132
           I    GGFS   FSP+       GG    D  ILPPP +M AEEG  LREWRRQNAI LE
Sbjct: 72  IGHVSGGFSPSPFSPD---PELDGG----DGPILPPPAQMGAEEGILLREWRRQNAIVLE 124

Query: 133 QKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKN 192
           +KE+KE+E+  +I+ EAE++K  FY KR    E NK  NRE+EK+F+A  EKFH EA+K 
Sbjct: 125 EKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFHAEADKQ 184

Query: 193 YWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKH 250
           YWK+I+ELIP+E+  IEKRGKK   + KKPSI VIQGPKPGKPTDLSRMRQILVKLKH
Sbjct: 185 YWKSISELIPHEIATIEKRGKK--DKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKH 240

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1

 Score =  177 bits (449), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 113/152 (74%), Gaps = 2/152 (1%)

Query: 100 AEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRK 159
           A D  ILP P EM  EEGF  REWRR N I LE+KEKKE+EM  +II EAE +K  FY K
Sbjct: 92  ASDGPILPDPNEM-REEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEK 150

Query: 160 RALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEK 219
           R   +E NK  NREKEKL+ A+ EKFH E +K+YWKAIAELIP EVP IEK+  KKD + 
Sbjct: 151 RDKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPD- 209

Query: 220 KKPSIIVIQGPKPGKPTDLSRMRQILVKLKHN 251
           KKPS+ VIQGPKPGKPTDL RMRQI +KLK N
Sbjct: 210 KKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTN 241

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica GN=Os07g0461500 PE=3 SV=1

 Score =  177 bits (449), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 121/165 (73%), Gaps = 8/165 (4%)

Query: 94  FGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYK 153
           F G    +D  +LPPP  M  EEG   REWRRQNA+ LE+KE+KERE   EII EA+++K
Sbjct: 127 FAGAGDGDDGPVLPPPEAMK-EEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFK 185

Query: 154 VEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGK 213
             F  KR L  + N+A NR++EKLFLA  EKFHGEAEK YWKAIAE++P+E+P +EKRGK
Sbjct: 186 RSFAEKRKLNGDTNRAQNRDREKLFLAKQEKFHGEAEKQYWKAIAEMVPHEIPGLEKRGK 245

Query: 214 KKDQEK-------KKPSIIVIQGPKPGKPTDLSRMRQILVKLKHN 251
           +++++        K+P ++V+QG KPGKPTDLSRMRQ+L+KLK  
Sbjct: 246 RREKQSAEANAKAKQPGVVVVQGTKPGKPTDLSRMRQVLMKLKQT 290

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P08082|CLCB_RAT Clathrin light chain B OS=Rattus norvegicus GN=Cltb PE=1 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 41/193 (21%)

Query: 76  YAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKE 135
            A+GGG        NG  F    G  D        +   +E  ++R+WR +   RL++ +
Sbjct: 59  LASGGGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELD 118

Query: 136 KKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF-----------LASWEK 184
              +   +E  E+A++   E+ ++++  VE NK +NR  +K F           +AS E 
Sbjct: 119 AASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEA 178

Query: 185 FHGEAEKNY----WKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPT-DLS 239
           F  E+++      W+ +A+L  +                          PK  K   D+S
Sbjct: 179 FVKESKEETPGTEWEKVAQLCDF-------------------------NPKSSKQCKDVS 213

Query: 240 RMRQILVKLKHNP 252
           R+R +L+ LK  P
Sbjct: 214 RLRSVLMSLKQTP 226

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Rattus norvegicus (taxid: 10116)

>sp|Q6IRU5|CLCB_MOUSE Clathrin light chain B OS=Mus musculus GN=Cltb PE=2 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 41/193 (21%)

Query: 76  YAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKE 135
            A+G G    S   NG  F    G  D        +   +E  ++R+WR +   RL++ +
Sbjct: 59  LASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELD 118

Query: 136 KKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF-----------LASWEK 184
              +   +E  E+A++   E+ ++++  VE NK +NR  +K F           +AS E 
Sbjct: 119 AASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEA 178

Query: 185 FHGEAEKNY----WKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPT-DLS 239
           F  E+++      W+ +A+L  +                          PK  K   D+S
Sbjct: 179 FVKESKEETPGTEWEKVAQLCDF-------------------------NPKSSKQCKDVS 213

Query: 240 RMRQILVKLKHNP 252
           R+R +L+ LK  P
Sbjct: 214 RLRSVLMSLKQTP 226

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Mus musculus (taxid: 10090)

>sp|P09497|CLCB_HUMAN Clathrin light chain B OS=Homo sapiens GN=CLTB PE=1 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 23/195 (11%)

Query: 63  SNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALRE 122
           S+  P  P P S    G G        NG  F    G  D        +   +E  ++R+
Sbjct: 50  SHAAPAQPGPTS----GAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRK 105

Query: 123 WRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASW 182
           WR +   RL++ +   +   +E  E+A++   E+ ++++  VE NK +NR  +K F    
Sbjct: 106 WREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF---- 161

Query: 183 EKFHGEAEKNYWKAIAELIPY----EVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPT-D 237
                     Y +  A++I Y    E    E + +    E +K + +    PK  K   D
Sbjct: 162 ----------YQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKD 211

Query: 238 LSRMRQILVKLKHNP 252
           +SR+R +L+ LK  P
Sbjct: 212 VSRLRSVLMSLKQTP 226

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
449516147	290	PREDICTED: clathrin light chain 2-like [	0.903	0.931	0.605	3e-82
449460303	290	PREDICTED: clathrin light chain 3-like [	0.903	0.931	0.605	8e-82
225448385	319	PREDICTED: clathrin light chain 2-like [	0.956	0.896	0.625	1e-78
255574399	282	conserved hypothetical protein [Ricinus	0.899	0.953	0.609	1e-78
147766743	319	hypothetical protein VITISV_014565 [Viti	0.956	0.896	0.625	3e-78
356494973	260	PREDICTED: uncharacterized protein LOC10	0.745	0.857	0.662	8e-69
224098537	258	predicted protein [Populus trichocarpa]	0.842	0.976	0.526	7e-63
240255608	258	Clathrin light chain protein [Arabidopsi	0.719	0.833	0.542	6e-62
224112533	252	predicted protein [Populus trichocarpa]	0.755	0.896	0.539	4e-60
388491146	313	unknown [Medicago truncatula]	0.802	0.766	0.539	2e-59

>gi|449516147|ref|XP_004165109.1| PREDICTED: clathrin light chain 2-like [Cucumis sativus]

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/289 (60%), Positives = 213/289 (73%), Gaps = 19/289 (6%)

Query: 11  DDDFMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTP 70
           DD  + ++PRLASQ F + FS FE +S    A DSSPIF +  Y  GD V         P
Sbjct: 13  DDATIGFEPRLASQRFET-FSTFEAES----ADDSSPIFGNLPYDQGDGV--------EP 59

Query: 71  SPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIR 130
           +PP+ ++AGGGFSSFS ++NGK F GGFG  D  IL  PT M  EEGF LREWRR NAIR
Sbjct: 60  TPPTNFSAGGGFSSFSSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIR 119

Query: 131 LEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAE 190
           LE+KEK+E E+L EII+EA+QYK+EFYR+R LA++++KA+NR+KEK +LA+ EKFH EA+
Sbjct: 120 LEEKEKREMELLEEIIDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEAD 179

Query: 191 KNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKH 250
           KNYWKAIAELIP EVP IE+RG KKD+E KKP+I+VIQGPKPGKPTDLSRMRQI +KLKH
Sbjct: 180 KNYWKAIAELIPNEVPTIEQRG-KKDKE-KKPAIVVIQGPKPGKPTDLSRMRQIHLKLKH 237

Query: 251 NPPPHMNPKPPPPPQTEPTKD----AKTSPAVGSGTATSKPAAPATPKG 295
           N P HM PKPPP      +K     A  + A GSG+A S+ AA AT +G
Sbjct: 238 NTPLHMKPKPPPAEPKAESKKDSSAAGATLAAGSGSAASRTAAVATSEG 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460303|ref|XP_004147885.1| PREDICTED: clathrin light chain 3-like [Cucumis sativus]

 Score =  309 bits (792), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 175/289 (60%), Positives = 212/289 (73%), Gaps = 19/289 (6%)

Query: 11  DDDFMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTP 70
           DD    ++PRLASQ F + FS FE +S    A DSSPIF +  Y  GD V         P
Sbjct: 13  DDATNGFEPRLASQRFET-FSTFEAES----ADDSSPIFGNLPYDQGDGV--------EP 59

Query: 71  SPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIR 130
           +PP+ ++AGGGFSSFS ++NGK F GGFG  D  IL  PT M  EEGF LREWRR NAIR
Sbjct: 60  TPPTNFSAGGGFSSFSSQQNGKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIR 119

Query: 131 LEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAE 190
           LE+KEK+E E+L EII+EA+QYK+EFYR+R LA++++KA+NR+KEK +LA+ EKFH EA+
Sbjct: 120 LEEKEKREMELLEEIIDEADQYKIEFYRRRKLALDHSKATNRDKEKQYLANQEKFHAEAD 179

Query: 191 KNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKH 250
           KNYWKAIAELIP EVP IE+RG KKD+E KKP+I+VIQGPKPGKPTDLSRMRQI +KLKH
Sbjct: 180 KNYWKAIAELIPNEVPTIEQRG-KKDKE-KKPAIVVIQGPKPGKPTDLSRMRQIHLKLKH 237

Query: 251 NPPPHMNPKPPPPPQTEPTKD----AKTSPAVGSGTATSKPAAPATPKG 295
           N P HM PKPPP      +K     A  + A GSG+A S+ AA AT +G
Sbjct: 238 NTPLHMKPKPPPAEPKAESKKDSSAAGATLAAGSGSAASRTAAVATSEG 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448385|ref|XP_002269465.1| PREDICTED: clathrin light chain 2-like [Vitis vinifera]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 187/299 (62%), Positives = 224/299 (74%), Gaps = 13/299 (4%)

Query: 9   FGDDDFMAYDPRLASQGFNSSFSQF-EGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLP 67
           F DD ++ YDPRL SQ F+S F+ F + +SVK+S  DS PI++S SY A D+VF+S P+P
Sbjct: 26  FDDDGYLGYDPRLPSQRFDS-FTNFADSESVKESVEDS-PIYNSASYAAADDVFTSQPIP 83

Query: 68  DTPSPPSIYAAGGGF-------SSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFAL 120
           DTPSPP IY +GGGF       SSFSPE NGK F  GF   D  ILPPPTEM +EEGFAL
Sbjct: 84  DTPSPPPIYVSGGGFAADQHEFSSFSPEANGKVFDEGFAGSDGPILPPPTEMQSEEGFAL 143

Query: 121 REWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLA 180
           REWRRQNAI LE+KEK+E+E+L +II+EA++YKVEFYR+R +  E NK +NREKEKLF+A
Sbjct: 144 REWRRQNAITLEEKEKREKELLSQIIDEADEYKVEFYRRRTITCETNKTTNREKEKLFIA 203

Query: 181 SWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSR 240
           + EKFH EA+KNYWKAIAELIP EVPAIEK+  KKDQ+ KKPSI+VIQGPKPGKPTDLSR
Sbjct: 204 NQEKFHAEADKNYWKAIAELIPNEVPAIEKKRGKKDQD-KKPSIVVIQGPKPGKPTDLSR 262

Query: 241 MRQILVKLKHNPPPHMNPKPPPPPQTEPTKDAKTSPAVGSGTATSKPAAPATPKGVAAA 299
           MRQIL+KLKHN     + KP PPP   P KD KT  +  +         P+ P+ VAAA
Sbjct: 263 MRQILLKLKHN--TPPHLKPSPPPAPAPAKDTKTGNSASAAAPAKAAVGPSPPEAVAAA 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574399|ref|XP_002528113.1| conserved hypothetical protein [Ricinus communis] gi|223532502|gb|EEF34292.1| conserved hypothetical protein [Ricinus communis]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 181/297 (60%), Positives = 212/297 (71%), Gaps = 28/297 (9%)

Query: 8   SFGDDD---FMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAG-DEVFSS 63
           SFGDD       YD R  SQ F SSFSQ        SAGDS P+FSS S G G D+VFSS
Sbjct: 3   SFGDDHGYVIDGYDHRFPSQRFYSSFSQ--------SAGDSPPMFSSYSTGGGADDVFSS 54

Query: 64  NPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEE--GFALR 121
            P+ +  SPPS+++  GG   FS E+NG+      G  +  +LP P  M AEE  GFALR
Sbjct: 55  VPVSE--SPPSVFSVSGG--GFSSEQNGQ------GGSNGPMLPLPDGMQAEEEEGFALR 104

Query: 122 EWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLAS 181
           EWRRQNAIRL++KEKKE +ML +II+EA+ +K EFYRKR L +EN KASN EKEKLFLA+
Sbjct: 105 EWRRQNAIRLKEKEKKENQMLHKIIQEADDFKTEFYRKRHLTIENKKASNGEKEKLFLAN 164

Query: 182 WEKFHGEAEKNYWKAIAELIPYEVPAIEKRG-KKKDQEKKKPSIIVIQGPKPGKPTDLSR 240
            E FH EAEKNYWKAIAELIP EVPAIEKRG K++DQEKKKPSI+VIQGPKPGKPTDLSR
Sbjct: 165 REMFHAEAEKNYWKAIAELIPQEVPAIEKRGKKQQDQEKKKPSIVVIQGPKPGKPTDLSR 224

Query: 241 MRQILVKLKHNPPPHMNPKPPPPPQTEPTKDAKTSPAVGSGTAT-SKPAAPATPKGV 296
           MRQ+L+KLKHNPP HM PK  P P  EP K  K +P+  +  +T + P   ATP+ V
Sbjct: 225 MRQLLLKLKHNPPLHMKPK--PSPSAEPKKGGKVAPSAANHASTKTAPTTSATPETV 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766743|emb|CAN69697.1| hypothetical protein VITISV_014565 [Vitis vinifera]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 187/299 (62%), Positives = 224/299 (74%), Gaps = 13/299 (4%)

Query: 9   FGDDDFMAYDPRLASQGFNSSFSQF-EGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLP 67
           F DD ++ YDPRL SQ F+S F+ F + +SVK+S  DS PI++S SY A D+VF+S P+P
Sbjct: 26  FDDDGYLGYDPRLPSQRFDS-FTNFADSESVKESVEDS-PIYNSASYAAADDVFTSQPIP 83

Query: 68  DTPSPPSIYAAGGGF-------SSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFAL 120
           DTPSPP IY +GGGF       SSFSPE NGK F  GF   D  ILPPPTEM +EEGFAL
Sbjct: 84  DTPSPPPIYVSGGGFAADQHEFSSFSPEANGKVFDEGFAGSDGPILPPPTEMQSEEGFAL 143

Query: 121 REWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLA 180
           REWRRQNAI LE+KEK+E+E+L +II+EA++YKVEFYR+R +  E NK +NREKEKLF+A
Sbjct: 144 REWRRQNAITLEEKEKREKELLSQIIDEADEYKVEFYRRRTITCETNKTTNREKEKLFIA 203

Query: 181 SWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSR 240
           + EKFH EA+KNYWKAIAELIP EVPAIEK+  KKDQ+ KKPSI+VIQGPKPGKPTDLSR
Sbjct: 204 NQEKFHAEADKNYWKAIAELIPNEVPAIEKKRGKKDQD-KKPSIVVIQGPKPGKPTDLSR 262

Query: 241 MRQILVKLKHNPPPHMNPKPPPPPQTEPTKDAKTSPAVGSGTATSKPAAPATPKGVAAA 299
           MRQIL+KLKHN     + KP PPP   P KD KT  +  +         P+ P+ VAAA
Sbjct: 263 MRQILLKLKHN--TPPHLKPSPPPAPAPAKDXKTGNSASAAAPAKAAVGPSPPEAVAAA 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494973|ref|XP_003516355.1| PREDICTED: uncharacterized protein LOC100783050 [Glycine max]

 Score =  266 bits (680), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 180/234 (76%), Gaps = 11/234 (4%)

Query: 68  DTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQN 127
           +T SPP IY+     ++FSPE+NGK   GGFGA D  ILPPPT M A+EGFALREWR QN
Sbjct: 36  ETSSPPPIYS----VAAFSPEQNGKGVDGGFGASDGPILPPPTNMVAKEGFALREWRMQN 91

Query: 128 AIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHG 187
           AI+LE+KEKKE+EM  +IIEEAE+YK+EFYRKR +  E NKASNRE+EKLFLAS EKFH 
Sbjct: 92  AIQLEEKEKKEKEMRSQIIEEAEEYKIEFYRKREVNAEKNKASNREREKLFLASREKFHA 151

Query: 188 EAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVK 247
           EA+KNYWK I ELIP+EVPAIEK  + K  + KKPSI VIQGPKPGKPTDLSRMR IL+K
Sbjct: 152 EADKNYWKTIGELIPHEVPAIEK--RGKKDKVKKPSIAVIQGPKPGKPTDLSRMRHILLK 209

Query: 248 LKHNPPPHMNPKPPPPPQTEPTKDAKTSPAVGSGTATSKP--AAPATPKGVAAA 299
           LKHN P HM PKPPP   +E  KDAKT P  G+ T+++ P     A P+ VAAA
Sbjct: 210 LKHNLPSHMKPKPPP---SETKKDAKTGPLDGASTSSNPPKVVLVAIPEAVAAA 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098537|ref|XP_002311210.1| predicted protein [Populus trichocarpa] gi|222851030|gb|EEE88577.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 147/279 (52%), Positives = 177/279 (63%), Gaps = 27/279 (9%)

Query: 25  GFNSSFSQFEGDSVKDSAGDSSPIFSSQ----SYGAGDEVFSSNPLPDTPSPPSIYAAGG 80
            F  SF+Q E     D   DS   ++SQ    S+  GD+V  S P         IY    
Sbjct: 3   AFAESFAQSESTRPFDD-DDSYAGYNSQPFDDSFATGDDVLESQP--------PIYG--- 50

Query: 81  GFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKERE 140
               FSP+ NG+ FGG  G     I   P+E  AE+G AL EWRRQN I LE KE++E+E
Sbjct: 51  ---QFSPQENGE-FGGSEG----RISLSPSETEAEQGLALIEWRRQNVILLEDKERREKE 102

Query: 141 MLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAEL 200
           +L +II+EAE YKVEFY+KR    ENNK +NREKEKLFL + EKFH EA+KNYWK+IAEL
Sbjct: 103 VLSQIIKEAEDYKVEFYKKRQFTCENNKTTNREKEKLFLVNQEKFHAEADKNYWKSIAEL 162

Query: 201 IPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKHNPPPHMNPKP 260
           IP EVPAIEKR  KKDQ+ KKP+I+VIQGPKPGKPT+LSRMRQIL+KLKH+ PPH+  K 
Sbjct: 163 IPNEVPAIEKRKGKKDQD-KKPAIVVIQGPKPGKPTELSRMRQILLKLKHDTPPHL--KH 219

Query: 261 PPPPQTEPTKDAKTSPAVGSGTATSKPAAPATPKGVAAA 299
            P   +     AKT  A G  T+T        P+ VA A
Sbjct: 220 SPAAASSTANAAKTCDATGVTTSTKANTVVTAPEPVAVA 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255608|ref|NP_566956.4| Clathrin light chain protein [Arabidopsis thaliana] gi|357580427|sp|F4J5M9.1|CLC3_ARATH RecName: Full=Clathrin light chain 3 gi|332645338|gb|AEE78859.1| Clathrin light chain protein [Arabidopsis thaliana]

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 141/260 (54%), Positives = 165/260 (63%), Gaps = 45/260 (17%)

Query: 13  DFMAYDPRLASQGFNSSFSQFEGDSVKDS---AGDSSPIFSSQSYGAGDEVFSSNPLPDT 69
           +F AY+ R  SQ F+SSFS F+    K+S    GDSS                  P P+T
Sbjct: 28  NFTAYESRFQSQRFDSSFSNFDSQPEKESDLPCGDSS------------------PRPET 69

Query: 70  PSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAI 129
            SPPSI                      F   +DSILPPP+ M  EEGFALREWRR NA+
Sbjct: 70  QSPPSI--------------------NSFDDTNDSILPPPSAMEKEEGFALREWRRLNAL 109

Query: 130 RLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEA 189
           RLE+KEK+E+EM+++I+E AEQYK EFY KR + +ENNK  NREKEK FL + EKF+ EA
Sbjct: 110 RLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEA 169

Query: 190 EKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLK 249
           +KN WKAIAELIP EVP IE RG K    KK  +I VIQGPKPGKPTDLSRMRQ+L KLK
Sbjct: 170 DKNNWKAIAELIPREVPVIENRGNK----KKTATITVIQGPKPGKPTDLSRMRQVLTKLK 225

Query: 250 HNPPPHMNPKPPPPPQTEPT 269
           HNPP HM PK P P   +P 
Sbjct: 226 HNPPTHMKPKLPSPSGADPN 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112533|ref|XP_002316222.1| predicted protein [Populus trichocarpa] gi|222865262|gb|EEF02393.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 138/256 (53%), Positives = 166/256 (64%), Gaps = 30/256 (11%)

Query: 44  DSSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDD 103
           DS P     S+ AG++VF S  LP       IY        FSP  NG     G G  + 
Sbjct: 27  DSQPF--DDSFAAGNDVFESQ-LP-------IYG------EFSPLENG-----GSGGPEG 65

Query: 104 SILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALA 163
            I PPP+E  AE+GFALREWRRQNAI LE KEK+E+E L +II+EAE YKVE Y+KR +A
Sbjct: 66  PIFPPPSEKDAEQGFALREWRRQNAILLEDKEKREKEALSQIIKEAEDYKVESYKKREIA 125

Query: 164 VENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPS 223
            ENNK +NREKEKLFL + EKFH E +KNYWK+IAELIP EV AIEKR  KKD E KKP+
Sbjct: 126 CENNKITNREKEKLFLVNREKFHAEVDKNYWKSIAELIPNEVAAIEKRTGKKDLE-KKPA 184

Query: 224 IIVIQGPKPGKPTDLSRMRQILVKLKHNPPPHMNPKPPPPPQTEPTKDAKTSPAVGSGTA 283
           I+VIQGPK GKPT+LSRMRQIL+KLKH+ PPH+        +  P + A +  A  + T+
Sbjct: 185 IVVIQGPKSGKPTELSRMRQILLKLKHSAPPHL--------KYSPAEAATSIDATVATTS 236

Query: 284 TSKPAAPATPKGVAAA 299
                    P+ VA A
Sbjct: 237 LKANTVVTAPETVAVA 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491146|gb|AFK33639.1| unknown [Medicago truncatula]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/267 (53%), Positives = 170/267 (63%), Gaps = 27/267 (10%)

Query: 1   MSSSFTGSFGDD---------DFMAYDPRLASQGFNSSFSQFEGDSVKDSAGDSSPIFSS 51
           MSSSF  +F DD         +F A D      G+   +S F+GD   D A  ++   S 
Sbjct: 1   MSSSF-DAFTDDLNVNSSSPHNFAASDQDDTFSGY-GGYSNFDGDVTVDHA--AAETTSP 56

Query: 52  QSYGAGDEVFSSNPLPD-TPSP-PSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPP 109
           + YG  D      P P  +PSP  S+    G  +      +   F       D  ILPPP
Sbjct: 57  EIYGFSD------PNPGYSPSPFESVTVENGNDNGNGYGDDDGVF-----VSDGPILPPP 105

Query: 110 TEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKA 169
            EM +EEG+ALREWRRQNAI L +KEK+E+EM  +IIEEAE+YKV FY KR L VE NK 
Sbjct: 106 GEMESEEGYALREWRRQNAIELVEKEKREKEMRLKIIEEAEEYKVAFYEKRKLNVETNKV 165

Query: 170 SNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQG 229
            NRE+EKLF+A+ EKFH EA+K YWK IAELIP EV  IEKR  KKDQ+ KKPSI V+QG
Sbjct: 166 QNREREKLFVANQEKFHKEADKAYWKTIAELIPREVANIEKRRGKKDQD-KKPSITVVQG 224

Query: 230 PKPGKPTDLSRMRQILVKLKHNPPPHM 256
           PKPGKPTDLSRMRQIL+KLKH PPPHM
Sbjct: 225 PKPGKPTDLSRMRQILLKLKHTPPPHM 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2061196	258	CLC2 "clathrin light chain 2"	0.712	0.825	0.540	1.1e-53
TAIR|locus:2074378	258	CLC3 "clathrin light chain 3"	0.672	0.779	0.532	4.1e-49
TAIR|locus:2051472	338	AT2G20760 [Arabidopsis thalian	0.608	0.538	0.534	2.8e-43
UNIPROTKB|Q5ZHR7	215	CLTA "Uncharacterized protein"	0.555	0.772	0.252	1.1e-06
UNIPROTKB|E1C6S9	210	CLTB "Uncharacterized protein"	0.565	0.804	0.25	1.3e-06
UNIPROTKB|F1NUW5	255	CLTB "Uncharacterized protein"	0.565	0.662	0.25	4.4e-06
UNIPROTKB|E2R2G2	211	CLTB "Uncharacterized protein"	0.558	0.791	0.240	0.00026
RGD|621353	229	Cltb "clathrin, light chain B"	0.498	0.650	0.246	0.00045

TAIR|locus:2061196 CLC2 "clathrin light chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 121/224 (54%), Positives = 152/224 (67%)

Query:    31 SQFEGDS---VKDSAGDSSPIFSSQSYGAGDEVFSS--NPLPDTPSPPSIYAAGGGFSSF 85
             S FE DS   + D A +S P+  S S+ A D  FS+    L    S   ++AA    S +
Sbjct:     2 SAFEDDSFVILNDDASESVPV--SGSFDATDS-FSAFDGSLQVEDSVDDVFAAPS--SDY 56

Query:    86 SPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREI 145
                 NG    G  G  D  ILPPP+EM ++EGFALREWRRQNAI+LE+KEK+E+E+L++I
Sbjct:    57 GAYSNGDGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQI 116

Query:   146 IEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEV 205
             IEEA+QYK EF++K  +  ENNKA+NREKEKL+L + EKF+ E+ KNYWKAIAEL+P EV
Sbjct:   117 IEEADQYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEV 176

Query:   206 PAIEXXXXXXXXXX-XXPSIIVIQGPKPGKPTDLSRMRQILVKL 248
             P IE             P++ VIQGPKPGKPTDL+RMRQILVKL
Sbjct:   177 PTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKL 220

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

TAIR|locus:2074378 CLC3 "clathrin light chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 114/214 (53%), Positives = 137/214 (64%)

Query:    35 GDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSF 94
             GD    +A +S   F SQ + +    F S P  ++  P        G SS  PE      
Sbjct:    24 GDGGNFTAYESR--FQSQRFDSSFSNFDSQPEKESDLPC-------GDSSPRPETQSPPS 74

Query:    95 GGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKV 154
                F   +DSILPPP+ M  EEGFALREWRR NA+RLE+KEK+E+EM+++I+E AEQYK 
Sbjct:    75 INSFDDTNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKA 134

Query:   155 EFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEXXXXX 214
             EFY KR + +ENNK  NREKEK FL + EKF+ EA+KN WKAIAELIP EVP IE     
Sbjct:   135 EFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNK 194

Query:   215 XXXXXXXPSIIVIQGPKPGKPTDLSRMRQILVKL 248
                     +I VIQGPKPGKPTDLSRMRQ+L KL
Sbjct:   195 KKTA----TITVIQGPKPGKPTDLSRMRQVLTKL 224

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2051472 AT2G20760 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 109/204 (53%), Positives = 123/204 (60%)

Query:    50 SSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFG-----AEDDS 104
             S   YG G    +S+P  D  SP         F S   + NG   GGG G     A D  
Sbjct:    52 SPNGYGFG----ASSPNHDFSSP---------FESSVNDANGN--GGGSGGDAIFASDGP 96

Query:   105 ILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAV 164
             ILP P EM  EEGF  REWRR N I LE+KEKKE+EM  +II EAE +K  FY KR   +
Sbjct:    97 ILPDPNEM-REEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTI 155

Query:   165 ENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEXXXXXXXXXXXXPSI 224
             E NK  NREKEKL+ A+ EKFH E +K+YWKAIAELIP EVP IE            PS+
Sbjct:   156 ETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKK-PSV 214

Query:   225 IVIQGPKPGKPTDLSRMRQILVKL 248
              VIQGPKPGKPTDL RMRQI +KL
Sbjct:   215 NVIQGPKPGKPTDLGRMRQIFLKL 238

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

UNIPROTKB|Q5ZHR7 CLTA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 44/174 (25%), Positives = 74/174 (42%)

Query:    35 GDSVKDSAG-DSSPIFSSQSYG--AGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPE--R 89
             G+   D A  D +  F +Q     AG E      + ++   P    A  GF S + +   
Sbjct:    17 GNGATDGAEEDPAAAFLAQQENEIAGIENDEGYGILESGDVPEALQAADGFDSGAVDGVM 76

Query:    90 NGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEA 149
             NG  +    G  D        +    E  ++R+WR +   RLEQ +   R+   E  E+A
Sbjct:    77 NGVVYQESNGPTDCYAAISQVDRLQSEPESIRKWREEQKERLEQLDANSRKQEAEWKEKA 136

Query:   150 EQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203
              +   E+Y ++   ++  KASNR  E+ F++  E      E   W+ +A+L  +
Sbjct:   137 IKELEEWYARQDEKLQKTKASNRAAEEAFVSDAEDVFPGTE---WERVAQLCDF 187

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

UNIPROTKB|E1C6S9 CLTB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 45/180 (25%), Positives = 81/180 (45%)

Query:    30 FSQFEGDSVKDSAGDSSPIFSSQSYGAG---DEVFSSNPLPDTPSPPSIYAAG---GGFS 83
             FS  EG   ++    ++ +   +S  AG   DE F      D+ S P+  AA     GF 
Sbjct:     8 FSSSEGAGAEEDPA-AAFLAQQESEIAGIENDEGFGPTD-GDSASAPAGQAAPPETAGFQ 65

Query:    84 SFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLR 143
             +     NG  F    G  D        +   +E  ++R+WR +   RLE+ +   +   +
Sbjct:    66 NGGATVNGDVFQESNGPTDAYAAIAKADRLTQEPESIRKWREEQKKRLEELDAASKVTEQ 125

Query:   144 EIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203
             E  E+A++   E+  ++   +E N+A+NR  E+ FL   ++   E   + W+ +A+L  +
Sbjct:   126 EWREKAKKDLEEWNLRQNEQMEKNRANNRASEEAFLKESKE---ETPGSEWEKVAQLCDF 182

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

UNIPROTKB|F1NUW5 CLTB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
 Identities = 45/180 (25%), Positives = 81/180 (45%)

Query:    30 FSQFEGDSVKDSAGDSSPIFSSQSYGAG---DEVFSSNPLPDTPSPPSIYAAG---GGFS 83
             FS  EG   ++    ++ +   +S  AG   DE F      D+ S P+  AA     GF 
Sbjct:     8 FSSSEGAGAEEDPA-AAFLAQQESEIAGIENDEGFGPTD-GDSASAPAGQAAPPETAGFQ 65

Query:    84 SFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLR 143
             +     NG  F    G  D        +   +E  ++R+WR +   RLE+ +   +   +
Sbjct:    66 NGGATVNGDVFQESNGPTDAYAAIAKADRLTQEPESIRKWREEQKKRLEELDAASKVTEQ 125

Query:   144 EIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203
             E  E+A++   E+  ++   +E N+A+NR  E+ FL   ++   E   + W+ +A+L  +
Sbjct:   126 EWREKAKKDLEEWNLRQNEQMEKNRANNRASEEAFLKESKE---ETPGSEWEKVAQLCDF 182

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0060170 "cilium membrane" evidence=IEA

UNIPROTKB|E2R2G2 CLTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 110 (43.8 bits), Expect = 0.00026, P = 0.00026
 Identities = 44/183 (24%), Positives = 78/183 (42%)

Query:    30 FSQFEGDSVKDSAGDSSPIFSSQSYG--AG---DEVFS----SNPLPDTPSPPSIYAAGG 80
             FS  E  + + +  D +  F +Q     AG   DE F     S+     P P    A G 
Sbjct:     8 FSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAQPGP----AGGA 63

Query:    81 GFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKERE 140
             G        NG  F    G  D        +   +E  ++R+WR +   RL++ +   + 
Sbjct:    64 GSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 123

Query:   141 MLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAEL 200
               +E  E+A++   E+ ++++  VE NK +NR  E+ F+   ++   E     W+ +A+L
Sbjct:   124 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKE---ETPGTEWEKVAQL 180

Query:   201 IPY 203
               +
Sbjct:   181 CDF 183

GO:0060170 "cilium membrane" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

RGD|621353 Cltb "clathrin, light chain B" [Rattus norvegicus (taxid:10116)]

 Score = 109 (43.4 bits), Expect = 0.00045, P = 0.00045
 Identities = 38/154 (24%), Positives = 66/154 (42%)

Query:    30 FSQFEGDSVKDSAGDSSPIFSSQSYG--AG---DEVFSSNPLPDTPSPPSIYAAGGGFSS 84
             FS  E  + + +  D +  F +Q     AG   D  F +       S     A+GGG   
Sbjct:     8 FSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDSGFGAPAASQVASAQPGLASGGGSED 67

Query:    85 FSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLRE 144
                  NG  F    G  D        +   +E  ++R+WR +   RL++ +   +   +E
Sbjct:    68 MGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQE 127

Query:   145 IIEEAEQYKVEFYRKRALAVENNKASNREKEKLF 178
               E+A++   E+ ++++  VE NK +NR  +K F
Sbjct:   128 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 161


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.130   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      299       238   0.00091  113 3  11 23  0.38    34
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.84u 0.16s 29.00t   Elapsed:  00:00:01
  Total cpu time:  28.84u 0.16s 29.00t   Elapsed:  00:00:01
  Start:  Thu May  9 16:29:11 2013   End:  Thu May  9 16:29:12 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005326 "neurotransmitter transporter activity" evidence=NAS

GO:0005802 "trans-Golgi network" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006836 "neurotransmitter transport" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016183 "synaptic vesicle coating" evidence=NAS

GO:0030118 "clathrin coat" evidence=IDA

GO:0030125 "clathrin vesicle coat" evidence=NAS

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=NAS

GO:0042277 "peptide binding" evidence=IDA

GO:0060170 "cilium membrane" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4J5M9	CLC3_ARATH	No assigned EC number	0.5423	0.7190	0.8333	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G51890	protein binding / structural molecule; protein binding / structural molecule; FUNCTIONS IN- protein binding, structural molecule activity; INVOLVED IN- intracellular protein transport, vesicle-mediated transport; LOCATED IN- clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Clathrin light chain (InterPro-IPR000996); BEST Arabidopsis thaliana protein match is- protein binding / structural molecule (TAIR-AT2G40060.1); Has 258 Blast hits to 256 proteins in 83 species [...] (258 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	DL3220C	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein; zinc finge [...] (376 aa)				•					0.573
	SNAP33	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein b [...] (300 aa)				•					0.508
	WRKY25	WRKY25; transcription factor; member of WRKY Transcription Factor; Group I. Located in nucleus. [...] (393 aa)				•					0.484
	AT1G49050	aspartyl protease family protein; aspartyl protease family protein; FUNCTIONS IN- aspartic-type [...] (583 aa)				•					0.475
	AT1G16670	protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (390 aa)				•					0.475
	AT5G35200	epsin N-terminal homology (ENTH) domain-containing protein; epsin N-terminal homology (ENTH) do [...] (544 aa)				•		•			0.472
	AT1G10340	ankyrin repeat family protein; ankyrin repeat family protein; FUNCTIONS IN- protein binding; IN [...] (578 aa)				•					0.457
	EDA39	EDA39 (embryo sac development arrest 39); calmodulin binding; embryo sac development arrest 39 [...] (526 aa)				•					0.435
	AT5G25440	protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein tyrosine ki [...] (313 aa)				•					0.432
	AT2G31880	leucine-rich repeat transmembrane protein kinase, putative; Encodes a putative leucine rich rep [...] (641 aa)				•					0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
pfam01086	225	pfam01086, Clathrin_lg_ch, Clathrin light chain	6e-11

>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 26/145 (17%)

Query: 107 PPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVEN 166
                +  EE  ++R+WR +  +R+E++++   +   E+IE+A++   +FY       E 
Sbjct: 101 SQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEK 160

Query: 167 NKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIV 226
            KA NR++ + FLA  + F   +    W+ +A+L  +  P   K+G+             
Sbjct: 161 TKAQNRKEAEQFLAERDDF--SSPGTEWERVAKLCDFN-PKGSKQGR------------- 204

Query: 227 IQGPKPGKPTDLSRMRQILVKLKHN 251
                     D SR R+IL+ LK +
Sbjct: 205 ----------DKSRFREILLSLKGD 219

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	100.0
PF01086	225	Clathrin_lg_ch: Clathrin light chain; InterPro: IP	100.0
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	91.73

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-40  Score=296.11  Aligned_cols=180  Identities=22%  Similarity=0.383  Sum_probs=157.2

Q ss_pred             CcCCCCCCCCCCcccCCCCCCCCCCCCccCCCCCCCCCCCCcCCCccCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHH
Q 022330           48 IFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQN  127 (299)
Q Consensus        48 ~~~~~~~~~~d~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~nG~~f~~~~g~sd~~~~p~p~~~~~eEpEaIREWREeq  127 (299)
                      |.+.---+++|++|....++...+.......|.|++.+.+.++|++|+..||+.++|+.+++.....+|||.||+||++|
T Consensus        36 i~G~~~a~e~Degl~~~ag~~~~p~~~~e~~g~~~d~~~~~~~~~~f~~~nG~~d~~a~is~~~~~~~epE~IRkWkeeQ  115 (216)
T KOG4031|consen   36 ILGDEPAIEDDEGLLTLAGDAPAPQRHFEESGPGIDALNGAVGGDVFQEDNGPADGYAGISQGPRLRDEPEKIRKWKEEQ  115 (216)
T ss_pred             hcCCCCCcccchhhhhhcCCCCCcCCCccccCCCcchhhccccccccccCCCCcccccccCCCCCcccChHHHHHHHHHH
Confidence            44433345999999988877766666666677788899999999999999999999999988877889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhcccCCChHHHHHhhcCCCchh
Q 022330          128 AIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPA  207 (299)
Q Consensus       128 a~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~NRe~Ek~FLa~rE~f~~~~~gn~WERVaeLID~e~p~  207 (299)
                      .+||+|||..+++.+++++++|+|+|++||.+|++++++++.+||++|+.|+..-+.|   ..||+||||++||||+   
T Consensus       116 ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~nk~eee~~~~e~~~~---~~gTeWErv~kL~D~n---  189 (216)
T KOG4031|consen  116 MKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANNKAEEEALVKENEEF---SPGTEWERVAKLCDFN---  189 (216)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccc---CCCchHHHHHHHHcCC---
Confidence            9999999999999999999999999999999999999999999988888777554443   4579999999999995   


Q ss_pred             hhhhcccccccccCCcceeecCCCCCC-CchhhHHHHHHHHhcCCCCCC
Q 022330          208 IEKRGKKKDQEKKKPSIIVIQGPKPGK-PTDLSRMRQILVKLKHNPPPH  255 (299)
Q Consensus       208 ~Ekr~~kkd~~Kkkpsi~vi~gpK~gK-~kDlSRMRqILLkLKq~Pp~h  255 (299)
                                            ||+.| .|||||||+|||+|||.|.+|
T Consensus       190 ----------------------~k~sk~gkD~SRlrslL~~LK~aP~a~  216 (216)
T KOG4031|consen  190 ----------------------PKSSKQGKDVSRLRSLLISLKQAPGAA  216 (216)
T ss_pred             ----------------------ccchhccccHHHHHHHHHHhhhCcCCC
Confidence                                  55555 599999999999999988764

>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=7e-37  Score=276.50  Aligned_cols=139  Identities=38%  Similarity=0.562  Sum_probs=56.8

Q ss_pred             CCCcCCCccCCCCCCCCCCCCCCCCC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330           86 SPERNGKSFGGGFGAEDDSILPPPTE-MPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAV  164 (299)
Q Consensus        86 ~~~~nG~~f~~~~g~sd~~~~p~p~~-~~~eEpEaIREWREeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~  164 (299)
                      .+++||..+...+++.+++...++.. +..+++++||+||++|+++|++||+++++++++|+++|+++|++||++|+.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~  158 (225)
T PF01086_consen   79 QGTINGNSFQEPNGPFSGPSSISPAPPVEEEEPEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKK  158 (225)
T ss_dssp             -------------------------STTTTS-TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCcccccCCCCCCCccccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888887777777666554443 34334999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHhhhhhhhcccCCChHHHHHhhcCCCchhhhhhcccccccccCCcceeecCCCCC-CCchhhHHHH
Q 022330          165 ENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPG-KPTDLSRMRQ  243 (299)
Q Consensus       165 Eknk~~NRe~Ek~FLa~rE~f~~~~~gn~WERVaeLID~e~p~~Ekr~~kkd~~Kkkpsi~vi~gpK~g-K~kDlSRMRq  243 (299)
                      ++++++||++|++||++|+.+  ..++|+|+|||+||||+                         ++.. ..+|+||||+
T Consensus       159 e~~k~~nr~~ee~fl~~~~~~--~~~~t~WerV~~Lid~~-------------------------~~~~~~~kD~sRmR~  211 (225)
T PF01086_consen  159 EKNKKQNREEEEEFLAKREEF--LQPGTEWERVAKLIDFN-------------------------PKSSKSGKDVSRMRE  211 (225)
T ss_dssp             HHHHHTT-------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHccccc--CCCCCcHHHHHHHhCCC-------------------------CCCCCCCCcHHHHHH
Confidence            999999999999999999998  45899999999999996                         1121 2599999999


Q ss_pred             HHHHhcCC
Q 022330          244 ILVKLKHN  251 (299)
Q Consensus       244 ILLkLKq~  251 (299)
                      |||+||++
T Consensus       212 iLl~LK~~  219 (225)
T PF01086_consen  212 ILLKLKGD  219 (225)
T ss_dssp             --------
T ss_pred             HHHHhhhh
Confidence            99999944

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.73  E-value=5.3  Score=37.49  Aligned_cols=83  Identities=19%  Similarity=0.153  Sum_probs=60.1

Q ss_pred             CCCCcCCCccCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330           85 FSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQK-EKKEREMLREIIEEAEQYKVEFYRKRALA  163 (299)
Q Consensus        85 ~~~~~nG~~f~~~~g~sd~~~~p~p~~~~~eEpEaIREWREeqa~rLeEK-Dk~E~E~keeikeeAek~ideFY~~rn~k  163 (299)
                      ..+..||.. ++..+.+.++-    ..-..|---.-|+=++++-.++-+. ++.++|+++++|++++++.+.|-+++...
T Consensus        81 ~f~~~nG~~-d~~a~is~~~~----~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~  155 (216)
T KOG4031|consen   81 VFQEDNGPA-DGYAGISQGPR----LRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKT  155 (216)
T ss_pred             ccccCCCCc-ccccccCCCCC----cccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677632 33333333322    2234456678899899888888776 47889999999999999999999999999


Q ss_pred             HHHHHHhhH
Q 022330          164 VENNKASNR  172 (299)
Q Consensus       164 ~Eknk~~NR  172 (299)
                      +..+++.--
T Consensus       156 ~~~nk~eee  164 (216)
T KOG4031|consen  156 KANNKAEEE  164 (216)
T ss_pred             HHHhHHHHH
Confidence            999975443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-25
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	2e-24
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	2e-08

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 98.3 bits (244), Expect = 4e-25
 Identities = 19/68 (27%), Positives = 39/68 (57%)

Query: 114 AEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNRE 173
            +E  ++R+WR +   RL++ +   + M +E  E+A++   E+ ++++  VE NK +NR 
Sbjct: 81  TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140

Query: 174 KEKLFLAS 181
            +K F   
Sbjct: 141 ADKAFYQQ 148

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 96.9 bits (240), Expect = 2e-24
 Identities = 35/156 (22%), Positives = 62/156 (39%)

Query: 26  FNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSF 85
           F+SS S     + +D A        S+  G  ++     P            A G     
Sbjct: 8   FSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASGASEDM 67

Query: 86  SPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREI 145
               NG  F    G  D        +   +E  ++R+WR +   RL++ +   + M +E 
Sbjct: 68  GATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW 127

Query: 146 IEEAEQYKVEFYRKRALAVENNKASNREKEKLFLAS 181
            E+A++   E+ ++++  VE NK +NR  +K F   
Sbjct: 128 REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 163

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J Length = 70

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 111 EMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKAS 170
           +    E  ++R+WR +   RLE  +   R+   E  E+A +   E+Y ++   ++  KA+
Sbjct: 2   DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKAN 61

Query: 171 NREKEKLF 178
           NR  ++ F
Sbjct: 62  NRVADEAF 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	99.97
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	99.92
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	99.81

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}

Probab=99.97  E-value=2.3e-32  Score=243.88  Aligned_cols=136  Identities=23%  Similarity=0.261  Sum_probs=75.4

Q ss_pred             CCCCcCCCCCCCCCCcccCCCCCCCCCCCCccCCCCCCCCCCCCcCCCccCCCCCCCCCCCCCCCCCCCcccchHHHHHH
Q 022330           45 SSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWR  124 (299)
Q Consensus        45 ~~~~~~~~~~~~~d~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~nG~~f~~~~g~sd~~~~p~p~~~~~eEpEaIREWR  124 (299)
                      .|-|.+    ++||++|+++.++++++..++... ||.+++++++||++||++|||+|+|+++++.+...+|||+||+||
T Consensus        32 eseIAG----IEnDegf~~~~~~~~~~~~~~~~~-~~~~~~~~~~ngd~~qesngp~d~yaai~qad~leeEPEsIRkWR  106 (205)
T 3lvh_D           32 ESEIAG----IENDEGFGAPAGSQGGLAQPGPAS-GASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWR  106 (205)
T ss_dssp             ----------------------------------------------------------------CCSTTTBSTTHHHHHH
T ss_pred             HHHhcc----cccccccCcccCCCcccccCCCCC-CCcccccccccchhhhhcCCCccchhhhccccccccCchHHHHHH
Confidence            344555    799999999999888777777554 588899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 022330          125 RQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKF  185 (299)
Q Consensus       125 Eeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~NRe~Ek~FLa~rE~f  185 (299)
                      |+|++||++||+.+++++++++++|+++|++||++|+++++|+|.+||..|++||++|+.-
T Consensus       107 EEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~aeeeFlaqrd~~  167 (205)
T 3lvh_D          107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD  167 (205)
T ss_dssp             HHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCccch
Confidence            9999999999999999999999999999999999999999999999999999999999884

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}

Probab=99.92  E-value=3.1e-27  Score=207.54  Aligned_cols=112  Identities=17%  Similarity=0.197  Sum_probs=104.4

Q ss_pred             CcCCCccCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330           88 ERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENN  167 (299)
Q Consensus        88 ~~nG~~f~~~~g~sd~~~~p~p~~~~~eEpEaIREWREeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Ekn  167 (299)
                      ..+|++|+++||++|+|+++++.++..+|||+||+|||+|++||++||+++++++++++++|+++|++||++|+++++++
T Consensus        55 ~~~Gd~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKn  134 (190)
T 3lvg_D           55 XXXXXXXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN  134 (190)
T ss_dssp             HHCCCCCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHhhhhhhhcccCCChHHHHHhhcC
Q 022330          168 KASNREKEKLFLASWEKFHGEAEKNYWKAIAELIP  202 (299)
Q Consensus       168 k~~NRe~Ek~FLa~rE~f~~~~~gn~WERVaeLID  202 (299)
                      |++||+.|++||++|+.-   ..|.+|.--.....
T Consensus       135 Ka~NR~aEEeFLaqRddt---tiGyV~~~~~~~~~  166 (190)
T 3lvg_D          135 KINNRIADKAFYQQPDAD---IIXXXXXXXXXXXX  166 (190)
T ss_dssp             HHTTCSSTTTSSHHHHHH---HCCTTTHHHHHHHC
T ss_pred             HHHhHHHHHHHHhCCccc---hhhhhccccccccc
Confidence            999999999999999984   56999986554443

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J

Probab=99.81  E-value=5.9e-20  Score=140.72  Aligned_cols=66  Identities=27%  Similarity=0.419  Sum_probs=64.2

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 022330          114 AEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFL  179 (299)
Q Consensus       114 ~eEpEaIREWREeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~NRe~Ek~FL  179 (299)
                      .+||++||+||++|+++|++||+.+++++++++++|+++||+||.+||.++++++++||..+++||
T Consensus         5 ~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl   70 (70)
T 1xi4_J            5 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY   70 (70)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            369999999999999999999999999999999999999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00