Citrus Sinensis ID: 022694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Secondary Structure (PSIPRED)
ccHHHHHHHcccccEEEEEEcccHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccEEEEEcccHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEEcHHHccccHHHHHHHHHHEEEHHHEHEEccccccccccEEEccHHHHcccccccccHHcccccccccEEEccccccccHHHHHHHHHHccccccHEHHHHHcHHcccccccccccccccEEEEcccHHHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mftnrylqdafkvplviqltddekcmwknLSVEESQRLARENAKDIIAcgfdvtktfifsdfdyvggafYKNMVKVAKCVTYNKVVGifgftgedhigkvsfppvqavpsfpssfphlfsgkdhlrclipcaidqdpyfrmtrdvaprigyhkpaliessffpalqgetgkmsasdpnsaiyvTDSAKAIKNKINKYAFSGGQESVELHRKLGanlevdipVKYLSFFLEDDAELEHIKKeygaggmltGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMavrplpnmfd
Flexible Loop (DISEMBL)
mftnrylqdafkvplviqltddEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGEtgkmsasdpnsAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEygaggmltgEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Low Complexity Region (SEG)
MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVpsfpssfphlfsGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSakaiknkinkYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Disordered region (IsUnstruct)
****RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPAL***************IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV********
Disordered Region (DISOPRED)
MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV*******EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP****************AIYVTDSAKAIKNKINK*A********E*HRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP****
Disordered Region (DISEMBL)
MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Disordered Region (DISPRO)
MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
P23381	471	Tryptophan--tRNA ligase,	yes	no	0.979	0.609	0.620	1e-106
Q5R4J1	472	Tryptophan--tRNA ligase,	yes	no	0.979	0.608	0.620	1e-106
P23612	475	Tryptophan--tRNA ligase,	yes	no	0.972	0.6	0.627	1e-106
P17248	476	Tryptophan--tRNA ligase,	no	no	0.972	0.598	0.620	1e-105
Q6P7B0	481	Tryptophan--tRNA ligase,	yes	no	0.972	0.592	0.627	1e-105
P32921	481	Tryptophan--tRNA ligase,	yes	no	0.972	0.592	0.616	1e-104
Q55DZ8	400	Tryptophan--tRNA ligase,	yes	no	0.965	0.707	0.555	3e-94
Q09692	395	Tryptophan--tRNA ligase,	yes	no	0.952	0.706	0.567	9e-91
Q12109	432	Tryptophan--tRNA ligase,	yes	no	0.972	0.659	0.524	4e-82
O96771	385	Tryptophan--tRNA ligase O	yes	no	0.945	0.719	0.444	1e-67

>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/290 (62%), Positives = 229/290 (78%), Gaps = 3/290 (1%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           +FT ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFS 236

Query: 61  DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL 118
           D DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +
Sbjct: 237 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296

Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
           F  +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356

Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
           S+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 416

Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           +K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 417 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2

>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/290 (62%), Positives = 229/290 (78%), Gaps = 3/290 (1%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           +FT ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct: 179 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFS 237

Query: 61  DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL 118
           D DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +
Sbjct: 238 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 297

Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
           F  +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct: 298 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 357

Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
           S+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct: 358 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 417

Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           +K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 418 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/287 (62%), Positives = 225/287 (78%), Gaps = 2/287 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLV+Q++DDEK +WK+L++E+      ENAKDIIACGFDV KTFIFSD D
Sbjct: 184 TKWLQDVFDVPLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSDLD 243

Query: 64  YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
           Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F G
Sbjct: 244 YMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHG 303

Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 304 QADIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 363

Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+
Sbjct: 364 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 423

Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           Y +G MLTGE+K+ L  VL  LV  HQ  R  VTDEMV  FM  R L
Sbjct: 424 YSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Oryctolagus cuniculus (taxid: 9986)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/287 (62%), Positives = 227/287 (79%), Gaps = 2/287 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 185 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSDLD 244

Query: 64  YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
           Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  
Sbjct: 245 YMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 304

Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 305 RTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 364

Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+AK IK K+NK+AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I+++
Sbjct: 365 FLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRD 424

Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 425 YTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/287 (62%), Positives = 226/287 (78%), Gaps = 2/287 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFDV KTFIFSD +
Sbjct: 184 TKWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSDLE 243

Query: 64  YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
           Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA PSF +SFP +F  
Sbjct: 244 YMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRD 303

Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 304 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSI 363

Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+
Sbjct: 364 FLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKD 423

Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct: 424 YTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/287 (61%), Positives = 225/287 (78%), Gaps = 2/287 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFD+ KTFIFSD +
Sbjct: 184 TKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSDLE 243

Query: 64  YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
           Y+G +  FY+N+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA PSF +SFP +F  
Sbjct: 244 YMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRD 303

Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 304 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSI 363

Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+
Sbjct: 364 FLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKD 423

Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FM  R L
Sbjct: 424 YTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1

 Score =  345 bits (884), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 160/288 (55%), Positives = 212/288 (73%), Gaps = 5/288 (1%)

Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
           +YLQDAF VPLV+Q+T+DEK +WK++++EES +    N KDIIA GFD+ KTFIFS+ +Y
Sbjct: 112 KYLQDAFNVPLVVQMTNDEKFLWKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNLEY 171

Query: 65  VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD- 123
           +    Y N++K+A+CV  N++  IFGF   D IGK +FPPVQA P FP SFPH+F   D 
Sbjct: 172 IH-HLYPNVLKIARCVNLNQIQNIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLNDP 230

Query: 124 ---HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
              ++RCLIPCAIDQDPYFRMTRD+A RIG+ KPALI S FFPALQG   KMSASD NSA
Sbjct: 231 EIKNIRCLIPCAIDQDPYFRMTRDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTNSA 290

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           +Y++D+   +K+KI K+AFSGG  + E   K GA+L VDI  +YL+F LEDD +L+ I  
Sbjct: 291 VYLSDTPDQVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAH 350

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
            Y  G M+TGE+KQ L  ++ +++ RH+ ARA +TDE++  FM++R L
Sbjct: 351 RYSTGKMMTGEIKQILIDLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1

 Score =  333 bits (854), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 159/280 (56%), Positives = 208/280 (74%), Gaps = 1/280 (0%)

Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
           ++LQD F+VPLVIQLTDDEK ++K  +S+E+ QR ARENAKDIIA GFD  KTFIF +  
Sbjct: 108 KWLQDVFQVPLVIQLTDDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNST 167

Query: 64  YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
           YVGGAFY+N+V++AKC+T N+    FGFT  D IGK+ F  +QA PSF SSFPH+F+G  
Sbjct: 168 YVGGAFYQNVVRIAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAK 227

Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 183
            + CLIPCAIDQDPYFR+TRDV+ R+ + KPAL+ S FFPALQG   KMSAS  +SAI++
Sbjct: 228 DIPCLIPCAIDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFM 287

Query: 184 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYG 243
           TD+   IKNKIN++AFSGG  ++E+HR+ G N +VD+  +YLSFFL+DD +L+ +   Y 
Sbjct: 288 TDTPNKIKNKINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYK 347

Query: 244 AGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 283
           AG + TGE+K    K+L + V   Q AR+ V +  +D FM
Sbjct: 348 AGTLSTGEMKGECIKLLQQFVSDFQAARSKVDEATLDMFM 387

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1

 Score =  304 bits (779), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 1/286 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
            ++LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFSD 
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186

Query: 63  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
            Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q   +FPSSFP++    
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246

Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
           D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306

Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
           +TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366

Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
            +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_0530 PE=1 SV=2

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/281 (44%), Positives = 189/281 (67%), Gaps = 4/281 (1%)

Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
           +Y+QDAFK+ LVIQ+TDDEK +WK++ +E++    REN KDI+A GFD   T+IFS+ + 
Sbjct: 106 KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSNVE- 164

Query: 65  VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 124
               F +N++K++K +  N+ + +FGF    +IG+V FP  +  P F SSF   F GK  
Sbjct: 165 ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIGKGA 222

Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184
           + CL+P A+DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+IY+ 
Sbjct: 223 M-CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD 281

Query: 185 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
           D+   I+ KI  YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y  
Sbjct: 282 DAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIK 341

Query: 245 GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 285
           G + + E+K++   V+ E V R+Q +R  VTD+ + AF+ +
Sbjct: 342 GEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 382

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
449449024	405	PREDICTED: tryptophan--tRNA ligase, cyto	0.996	0.720	0.924	1e-158
225446410	399	PREDICTED: tryptophanyl-tRNA synthetase,	0.996	0.731	0.907	1e-155
147832996	399	hypothetical protein VITISV_027725 [Viti	0.996	0.731	0.904	1e-155
297828964	402	tRNA synthetase class I family protein [	0.996	0.726	0.894	1e-154
224102881	404	predicted protein [Populus trichocarpa]	0.996	0.722	0.883	1e-153
255578670	405	tryptophanyl-tRNA synthetase, putative [	0.996	0.720	0.873	1e-151
15229319	402	tryptophanyl-tRNA synthetase [Arabidopsi	0.996	0.726	0.877	1e-150
358344209	401	Tryptophanyl-tRNA synthetase [Medicago t	0.996	0.728	0.863	1e-150
42572249	402	tryptophanyl-tRNA synthetase [Arabidopsi	0.996	0.726	0.870	1e-149
449523764	389	PREDICTED: tryptophan--tRNA ligase, cyto	0.941	0.709	0.920	1e-148

>gi|449449024|ref|XP_004142265.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cucumis sativus]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/293 (92%), Positives = 282/293 (96%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV+KTFIFS
Sbjct: 114 MFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVSKTFIFS 172

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDY+GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS
Sbjct: 173 DFDYIGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 232

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD LRCLIPCAIDQDPYFRMTRDVAPR+GYHKPALIESSFFPALQGETGKMSASDPNSA
Sbjct: 233 GKDDLRCLIPCAIDQDPYFRMTRDVAPRLGYHKPALIESSFFPALQGETGKMSASDPNSA 292

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDSAK IKNKINKYAFSGGQ+S+E HR  GANLEVDIP KYL+FFL+DDAELEHI K
Sbjct: 293 IYVTDSAKDIKNKINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITK 352

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EYGAG MLTGEVKQRL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 353 EYGAGRMLTGEVKQRLIQVLTEMVERHRRARAAVTDEMVDAFMAVRPLPNMFD 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446410|ref|XP_002275626.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic [Vitis vinifera] gi|302143316|emb|CBI21877.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/293 (90%), Positives = 280/293 (95%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD+++TFIFS
Sbjct: 108 MFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDISRTFIFS 166

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFYKNMVKV KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS
Sbjct: 167 DFDYVGGAFYKNMVKVGKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 226

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES FFPALQGETGKMSASDPNSA
Sbjct: 227 GKDDLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESLFFPALQGETGKMSASDPNSA 286

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDS K IKNKINKYAFSGGQ+S+E HRK GANLEVDIP+KYL FFLEDDAELE+I+ 
Sbjct: 287 IYVTDSGKDIKNKINKYAFSGGQDSIENHRKYGANLEVDIPIKYLGFFLEDDAELEYIRT 346

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EYGAG MLTG+VK+RL +VLTELVERH+ ARAAVTDEMVDAFMAVRPLPNMF+
Sbjct: 347 EYGAGRMLTGDVKKRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFN 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832996|emb|CAN66126.1| hypothetical protein VITISV_027725 [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/293 (90%), Positives = 279/293 (95%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD+++TFIFS
Sbjct: 108 MFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDISRTFIFS 166

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFYKNMVKV KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS
Sbjct: 167 DFDYVGGAFYKNMVKVGKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 226

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE  FFPALQGETGKMSASDPNSA
Sbjct: 227 GKDDLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIEXLFFPALQGETGKMSASDPNSA 286

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDS K IKNKINKYAFSGGQ+S+E HRK GANLEVDIP+KYL FFLEDDAELE+I+ 
Sbjct: 287 IYVTDSGKDIKNKINKYAFSGGQDSIENHRKYGANLEVDIPIKYLGFFLEDDAELEYIRT 346

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EYGAG MLTG+VK+RL +VLTELVERH+ ARAAVTDEMVDAFMAVRPLPNMF+
Sbjct: 347 EYGAGRMLTGDVKKRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFN 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828964|ref|XP_002882364.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata] gi|297328204|gb|EFH58623.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/293 (89%), Positives = 281/293 (95%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQ+AFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS
Sbjct: 111 MFT-KYLQEAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 169

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFYKNMV+VAKCVT NK +GIFGF+GEDHIGK+SFPPVQAVPSFPSSFPHLF 
Sbjct: 170 DFDYVGGAFYKNMVRVAKCVTLNKAMGIFGFSGEDHIGKLSFPPVQAVPSFPSSFPHLFP 229

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIESSFFPALQGE GKMSASDPNSA
Sbjct: 230 GKDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESSFFPALQGENGKMSASDPNSA 289

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTD+AK IKNKIN+YAFSGGQ+SVE HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKK
Sbjct: 290 IYVTDTAKDIKNKINRYAFSGGQDSVEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKK 349

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EYG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 350 EYGEGRMLTGEVKKRLTEVLTEMVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102881|ref|XP_002312840.1| predicted protein [Populus trichocarpa] gi|118482985|gb|ABK93404.1| unknown [Populus trichocarpa] gi|222849248|gb|EEE86795.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/293 (88%), Positives = 277/293 (94%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQD F+VPLVIQLTDDEKCMWKNL+VEESQRLARENAKDIIACGFD+T+TFIFS
Sbjct: 113 MFT-KYLQDVFRVPLVIQLTDDEKCMWKNLTVEESQRLARENAKDIIACGFDITRTFIFS 171

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFYKNMVKVAKCVT NKV GIFGF+GEDHIGK+SFPPVQAVPSFPSSFPHLFS
Sbjct: 172 DFDYVGGAFYKNMVKVAKCVTLNKVQGIFGFSGEDHIGKISFPPVQAVPSFPSSFPHLFS 231

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD LRCLIPCAIDQDPYFRMTRD APRIGYHKP+LIES+FFPALQGETGKMSASDPNSA
Sbjct: 232 GKDDLRCLIPCAIDQDPYFRMTRDAAPRIGYHKPSLIESTFFPALQGETGKMSASDPNSA 291

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDSAK IK+KINKYAFSGGQ+SVE HR+LGANLEVDI VKYL+FFLEDDAELEHIKK
Sbjct: 292 IYVTDSAKVIKSKINKYAFSGGQDSVEKHRQLGANLEVDISVKYLNFFLEDDAELEHIKK 351

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EY AG MLTGEVK RL  VL+E+VERH+ ARA+VTDE+VDAFMA RPLPNMFD
Sbjct: 352 EYAAGRMLTGEVKGRLGSVLSEIVERHRAARASVTDEVVDAFMAARPLPNMFD 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578670|ref|XP_002530195.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223530288|gb|EEF32185.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/293 (87%), Positives = 279/293 (95%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQ+AF+VPLVIQLTDDEKCMWKNLSVEES+RLARENA+DIIACGFDV++TFIF 
Sbjct: 114 MFT-KYLQEAFRVPLVIQLTDDEKCMWKNLSVEESKRLARENARDIIACGFDVSRTFIFQ 172

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DF+YV G+FY+NMVKV KCVTYNKVVGIFGFTGEDHIGKVSFP VQAVPSFPSSFPHLFS
Sbjct: 173 DFNYVAGSFYENMVKVEKCVTYNKVVGIFGFTGEDHIGKVSFPAVQAVPSFPSSFPHLFS 232

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD +RCLIPCAIDQDPYFRMTRDVAPR+G+HKP+LIES FFPALQGETGKMSASDPNSA
Sbjct: 233 GKDDIRCLIPCAIDQDPYFRMTRDVAPRLGFHKPSLIESLFFPALQGETGKMSASDPNSA 292

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IY+TDSAK IKNKINKYAFSGGQ+S+E HRK GANLEVDIPVKYL+FFLEDD ELEHIK 
Sbjct: 293 IYLTDSAKEIKNKINKYAFSGGQDSLEKHRKYGANLEVDIPVKYLNFFLEDDDELEHIKT 352

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EY AG MLTGEVK+RLA+VLTE+VERH+VAR+AVTDEMVDAFMAVRPLPNMFD
Sbjct: 353 EYAAGRMLTGEVKKRLAEVLTEIVERHRVARSAVTDEMVDAFMAVRPLPNMFD 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229319|ref|NP_187110.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|145331754|ref|NP_001078104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|6175164|gb|AAF04890.1|AC011437_5 putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|110740619|dbj|BAE98413.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640582|gb|AEE74103.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640584|gb|AEE74105.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/293 (87%), Positives = 277/293 (94%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQ+AFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDVTKTFIFS
Sbjct: 111 MFT-KYLQEAFKVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 169

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFYKNMVKV KCVT NK +GIFGF+GED I K+SFPPVQAVPSFPSSFPHLF 
Sbjct: 170 DFDYVGGAFYKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFP 229

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIES+FFPALQGE GKMSASDPNSA
Sbjct: 230 GKDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQGENGKMSASDPNSA 289

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDSAK IKNKIN+YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKK
Sbjct: 290 IYVTDSAKDIKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKK 349

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EYG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 350 EYGEGRMLTGEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344209|ref|XP_003636184.1| Tryptophanyl-tRNA synthetase [Medicago truncatula] gi|355502119|gb|AES83322.1| Tryptophanyl-tRNA synthetase [Medicago truncatula]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/293 (86%), Positives = 279/293 (95%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQ+AFKVPLVIQLTDDEK +WKNL++EES+RLARENAKDIIACGFDV+KTFIFS
Sbjct: 110 MFT-KYLQEAFKVPLVIQLTDDEKFLWKNLTIEESRRLARENAKDIIACGFDVSKTFIFS 168

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFY+NMV++ K VTYN+VVGIFGF GEDHIGKVSFPPVQA PSFPSSFPHLF 
Sbjct: 169 DFDYVGGAFYRNMVQIGKRVTYNQVVGIFGFIGEDHIGKVSFPPVQAAPSFPSSFPHLFE 228

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GK +LRCLIPCAIDQDPYFRMTRDVAP+IGY+KPALIESSFFPALQGETGKMSASDPNSA
Sbjct: 229 GKGNLRCLIPCAIDQDPYFRMTRDVAPKIGYNKPALIESSFFPALQGETGKMSASDPNSA 288

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDSAK IKNK+N+YAFSGGQ+S+E HR+LGANLEVDIP+KYLSFFLEDDAELEHIKK
Sbjct: 289 IYVTDSAKDIKNKVNRYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDAELEHIKK 348

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EYGAG MLTGEVKQRL +VLTE+VERH+ ARA VT++MVDAFMAVRPLP+MFD
Sbjct: 349 EYGAGRMLTGEVKQRLIQVLTEIVERHRTARANVTEKMVDAFMAVRPLPHMFD 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572249|ref|NP_974219.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640583|gb|AEE74104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/293 (87%), Positives = 276/293 (94%), Gaps = 1/293 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQ+AFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDVTKTFIFS
Sbjct: 111 MFT-KYLQEAFKVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 169

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFYKNMVKV KCVT NK +GIFGF+GED I K+SFPPVQAVPSFPSSFPHLF 
Sbjct: 170 DFDYVGGAFYKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFP 229

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIES+FFPALQ + GKMSASDPNSA
Sbjct: 230 GKDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQAKNGKMSASDPNSA 289

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDSAK IKNKIN+YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKK
Sbjct: 290 IYVTDSAKDIKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKK 349

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
           EYG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 350 EYGEGRMLTGEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523764|ref|XP_004168893.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like, partial [Cucumis sativus]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/277 (92%), Positives = 266/277 (96%), Gaps = 1/277 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV+KTFIFS
Sbjct: 114 MFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVSKTFIFS 172

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDY+GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS
Sbjct: 173 DFDYIGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 232

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD LRCLIPCAIDQDPYFRMTRDVAPR+GYHKPALIESSFFPALQGETGKMSASDPNSA
Sbjct: 233 GKDDLRCLIPCAIDQDPYFRMTRDVAPRLGYHKPALIESSFFPALQGETGKMSASDPNSA 292

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTDSAK IKNKINKYAFSGGQ+S+E HR  GANLEVDIP KYL+FFL+DDAELEHI K
Sbjct: 293 IYVTDSAKDIKNKINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITK 352

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 277
           EYGAG MLTGEVKQRL +VLTE+VERH+ ARAAVTDE
Sbjct: 353 EYGAGRMLTGEVKQRLIQVLTEMVERHRRARAAVTDE 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2084993	402	AT3G04600 [Arabidopsis thalian	0.996	0.726	0.812	1.9e-124
UNIPROTKB|F1SAP4	482	WARS "Uncharacterized protein"	0.996	0.605	0.572	4.7e-87
UNIPROTKB|P23381	471	WARS "Tryptophan--tRNA ligase,	0.979	0.609	0.572	9.9e-87
UNIPROTKB|E2RGG9	476	WARS "Uncharacterized protein"	0.979	0.602	0.572	2e-86
UNIPROTKB|P17248	476	WARS "Tryptophan--tRNA ligase,	0.979	0.602	0.572	3.3e-86
RGD|1308278	481	Wars "tryptophanyl-tRNA synthe	0.979	0.596	0.579	1.1e-85
UNIPROTKB|Q6P7B0	481	Wars "Tryptophan--tRNA ligase,	0.979	0.596	0.579	1.1e-85
UNIPROTKB|E1C2Z5	473	WARS "Uncharacterized protein"	0.979	0.606	0.562	4.9e-85
MGI|MGI:104630	481	Wars "tryptophanyl-tRNA synthe	0.979	0.596	0.568	6.2e-85
ZFIN|ZDB-GENE-040426-1742	463	wars "tryptophanyl-tRNA synthe	0.979	0.619	0.568	1.7e-84

TAIR|locus:2084993 AT3G04600 [Arabidopsis thaliana (taxid:3702)]

 Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
 Identities = 238/293 (81%), Positives = 257/293 (87%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             MFT +YLQ+AFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDVTKTFIFS
Sbjct:   111 MFT-KYLQEAFKVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 169

Query:    61 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXX 120
             DFDYVGGAFYKNMVKV KCVT NK +GIFGF+GED I K+SFPPVQAV            
Sbjct:   170 DFDYVGGAFYKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFP 229

Query:   121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
             GKD+LRCLIPCAIDQDPYFRMTRDVAPR+GY KPALIES+FFPALQGE GKMSASDPNSA
Sbjct:   230 GKDNLRCLIPCAIDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQGENGKMSASDPNSA 289

Query:   181 IYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
             IYVTDS          YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKK
Sbjct:   290 IYVTDSAKDIKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKK 349

Query:   241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
             EYG G MLTGEVK+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct:   350 EYGEGRMLTGEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|F1SAP4 WARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 169/295 (57%), Positives = 213/295 (72%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQ+TDDEK +WK L++E++   A ENAKDIIACGFDV KTFIFS
Sbjct:   183 IFT-KWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIFS 241

Query:    61 DFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct:   242 DLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQI 301

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct:   302 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 361

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD  LE I
Sbjct:   362 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQI 421

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 293
             +K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F+
Sbjct:   422 RKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKEFMTPRKLSYDFE 476

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

UNIPROTKB|P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 166/290 (57%), Positives = 212/290 (73%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct:   178 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFS 236

Query:    61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct:   237 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct:   297 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct:   357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 416

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             +K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   417 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

GO:0001525 "angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=NAS;TAS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0045765 "regulation of angiogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|E2RGG9 WARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 166/290 (57%), Positives = 213/290 (73%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct:   183 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDIKKTFIFS 241

Query:    61 DFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct:   242 DLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDSIGKISFPAIQAAPSFSNSFPQI 301

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct:   302 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 361

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct:   362 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 421

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             +K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   422 RKDYTSGDMLTGELKKTLIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

UNIPROTKB|P17248 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 166/290 (57%), Positives = 213/290 (73%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct:   183 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFS 241

Query:    61 DFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D DY+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct:   242 DLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 301

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct:   302 FRDRTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 361

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S+I++TD+          +AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct:   362 SSIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 421

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             +++Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   422 RRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

GO:0005737 "cytoplasm" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

RGD|1308278 Wars "tryptophanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 168/290 (57%), Positives = 211/290 (72%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFDV KTFIFS
Sbjct:   182 IFT-KWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFS 240

Query:    61 DFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D +Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA           
Sbjct:   241 DLEYMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKI 300

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPN
Sbjct:   301 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPN 360

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S+I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I
Sbjct:   361 SSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQI 420

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             +K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct:   421 RKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

GO:0001525 "angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA;ISO

UNIPROTKB|Q6P7B0 Wars "Tryptophan--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 168/290 (57%), Positives = 211/290 (72%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFDV KTFIFS
Sbjct:   182 IFT-KWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFS 240

Query:    61 DFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D +Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA           
Sbjct:   241 DLEYMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKI 300

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPN
Sbjct:   301 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPN 360

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S+I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I
Sbjct:   361 SSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQI 420

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             +K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct:   421 RKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

UNIPROTKB|E1C2Z5 WARS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 163/290 (56%), Positives = 212/290 (73%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQ+AF VPLVIQLTDDEK +WK+++ E++   A+ENA+DIIACGFDV KTFIFS
Sbjct:   181 LFT-KWLQEAFDVPLVIQLTDDEKYLWKDMTTEKAYEYAKENARDIIACGFDVNKTFIFS 239

Query:    61 DFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D DY+G +  FYKN++KV K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct:   240 DLDYLGSSTGFYKNIIKVQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQI 299

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
               GK++++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S FFPALQG   KMSASD N
Sbjct:   300 FNGKENIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSVFFPALQGAQTKMSASDVN 359

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S++++ D+          +AFSGG++++E HRK G N +VD+   YL+FFLEDD +LE +
Sbjct:   360 SSVFLNDTPKQIKTKINKHAFSGGRDTIEEHRKYGGNCDVDVSFMYLTFFLEDDDKLEQL 419

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             K+ Y +G +LTGE+K+ L + L  L+  HQ  R  +TDE+V  FM  R L
Sbjct:   420 KQAYTSGELLTGELKKVLIETLQPLIAAHQERRKQITDEVVKQFMTPRKL 469

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

MGI|MGI:104630 Wars "tryptophanyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 165/290 (56%), Positives = 210/290 (72%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFD+ KTFIFS
Sbjct:   182 IFT-KWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFS 240

Query:    61 DFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D +Y+G +  FY+N+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA           
Sbjct:   241 DLEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKI 300

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPN
Sbjct:   301 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPN 360

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S+I++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I
Sbjct:   361 SSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQI 420

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             +K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E V  FM  R L
Sbjct:   421 RKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=ISO

ZFIN|ZDB-GENE-040426-1742 wars "tryptophanyl-tRNA synthetase" [Danio rerio (taxid:7955)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 165/290 (56%), Positives = 210/290 (72%)

Query:     1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
             +FT ++LQD F VPLVIQLTDDEK +WK+L++EE +R   ENA+DIIACGFDV KTFIFS
Sbjct:   171 IFT-KWLQDVFDVPLVIQLTDDEKYLWKDLTLEECRRFTVENARDIIACGFDVNKTFIFS 229

Query:    61 DFDYVGG--AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
             D +Y+G   AFY+N+VKV K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct:   230 DLEYMGASPAFYRNVVKVQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 289

Query:   119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
                +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASD N
Sbjct:   290 FGDRKDVQCLIPCAIDQDPYFRMTRDVAPRIGYLKPALLHSTFFPALQGAQTKMSASDAN 349

Query:   179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             S I++TD+          +AFSGG++++E HRKLG + +VD+   YL+FFLEDD +LE I
Sbjct:   350 STIFLTDTPKQIKNKVNKHAFSGGKDTIEEHRKLGGDPDVDVSFMYLTFFLEDDEQLEKI 409

Query:   239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             +++Y +G MLTGE+K+ L   L  ++  HQ  R  VTD++V  FM  R L
Sbjct:   410 RQDYSSGAMLTGELKKSLIDTLQPIIAEHQEKRKHVTDDIVQQFMTPRKL 459

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23381	SYWC_HUMAN	6, ., 1, ., 1, ., 2	0.6206	0.9795	0.6093	yes	no
Q12109	SYWC_YEAST	6, ., 1, ., 1, ., 2	0.5244	0.9726	0.6597	yes	no
Q55DZ8	SYWC_DICDI	6, ., 1, ., 1, ., 2	0.5555	0.9658	0.7075	yes	no
Q09692	SYWC_SCHPO	6, ., 1, ., 1, ., 2	0.5678	0.9522	0.7063	yes	no
Q5R4J1	SYWC_PONAB	6, ., 1, ., 1, ., 2	0.6206	0.9795	0.6080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.2	0.914
3rd Layer	6.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
PLN02486	383	PLN02486, PLN02486, aminoacyl-tRNA ligase	0.0
TIGR00233	327	TIGR00233, trpS, tryptophanyl-tRNA synthetase	4e-85
cd00806	280	cd00806, TrpRS_core, catalytic core domain of tryp	8e-85
PRK12285	368	PRK12285, PRK12285, tryptophanyl-tRNA synthetase;	3e-80
COG0180	314	COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans	4e-64
PRK08560	329	PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid	3e-19
pfam00579	291	pfam00579, tRNA-synt_1b, tRNA synthetases class I	2e-15
PRK00927	333	PRK00927, PRK00927, tryptophanyl-tRNA synthetase;	3e-12
PRK12282	333	PRK12282, PRK12282, tryptophanyl-tRNA synthetase I	1e-10
cd00805	269	cd00805, TyrRS_core, catalytic core domain of tyro	1e-06
PTZ00126	383	PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provi	5e-06

>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase

 Score =  599 bits (1545), Expect = 0.0
 Identities = 251/289 (86%), Positives = 271/289 (93%), Gaps = 1/289 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT +YLQDAFKVPLVIQLTDDEK +WKNLSVEESQRLARENAKDIIACGFDV +TFIFS
Sbjct: 96  MFT-KYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFS 154

Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
           DFDYVGGAFYKNMVK+AKCVT N+V GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF 
Sbjct: 155 DFDYVGGAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFG 214

Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
           GKD LRCLIPCAIDQDPYFRMTRDVAPR+GY+KPALIES FFPALQGE+GKMSASDPNSA
Sbjct: 215 GKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSA 274

Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
           IYVTD+ K IKNKINKYAFSGGQ++VE HR+LGANLEVDIP KYL+FFLEDDAELE IKK
Sbjct: 275 IYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKK 334

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 289
           EYG+G MLTGEVK+RL +VLTE+VERHQ ARAAVTDEMVDAFMAVRPLP
Sbjct: 335 EYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383

Length = 383

>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase

 Score =  258 bits (660), Expect = 4e-85
 Identities = 101/296 (34%), Positives = 148/296 (50%), Gaps = 29/296 (9%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN-AKDIIACGFDVTKTFIF 59
           + T    Q  F V L I + D      K     ++ R ARE  A D +A G D  KTFIF
Sbjct: 24  IQTKWLQQ--FGVELFICIADLHAITVKQTD-PDALRKAREELAADYLAVGLDPEKTFIF 80

Query: 60  SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH-----IGKVSFPPVQAVPSFPSS 114
              DY     Y+    ++  VT+ ++  +  F  +       IG +S+P +QA       
Sbjct: 81  LQSDY--PEHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLLSYPVLQAADILLYQ 138

Query: 115 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGE 168
                        L+P  IDQD +  +TRD+A R        + KP  + S FFP L G 
Sbjct: 139 AD-----------LVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGL 187

Query: 169 TG-KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 227
           +G KMS SDPNSAI++TD+ K IK KI K A  GG+ ++  HR+      + +  +YLSF
Sbjct: 188 SGKKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGRVTLFEHREKPGVPNLLVIYQYLSF 247

Query: 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 283
           FL DD +L+ I + Y +G +  GE K+ L +VL E ++  Q  RA + +E++D  +
Sbjct: 248 FLIDDDKLKEIYEAYKSGKLGYGECKKALIEVLQEFLKEIQERRAEIAEEILDKIL 303

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model [Protein synthesis, tRNA aminoacylation]. Length = 327

>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase

 Score =  255 bits (654), Expect = 8e-85
 Identities = 96/272 (35%), Positives = 133/272 (48%), Gaps = 31/272 (11%)

Query: 6   YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 65
           +LQ+A    L   + D      K L  EE ++  RENAKD +ACG D  K+ IF   D  
Sbjct: 26  WLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDV- 83

Query: 66  GGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSFPHLF 119
               Y+    ++  VT+ ++  + GF          +IG +++P +QA            
Sbjct: 84  -PEHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILLYKA---- 138

Query: 120 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH------KPALIES--SFFPALQGETGK 171
                  CL+P  IDQDP+  +TRD+A R          KPA + S  +F P LQG + K
Sbjct: 139 -------CLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKK 191

Query: 172 MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED 231
           MS SDPN+AI++TDS K IK KI K A  GG+     HR+ G    V   V+  S F  D
Sbjct: 192 MSKSDPNNAIFLTDSPKEIKKKIMKAATDGGR---TEHRRDGGGPGVSNLVEIYSAFFND 248

Query: 232 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 263
           D E      EY +GG+  GE K+ LA+ + E 
Sbjct: 249 DDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 280

>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed

 Score =  246 bits (631), Expect = 3e-80
 Identities = 102/284 (35%), Positives = 157/284 (55%), Gaps = 19/284 (6%)

Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
           ++ Q+ F   + I + DDE    + LS EE++  A E   D+IA GFD  KT I+   + 
Sbjct: 91  KWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSEN 149

Query: 65  VGGAFYKNM-VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
                  ++  ++AK V ++++  I+GFTGE +IG + +P  QA        P L  G  
Sbjct: 150 ---IKVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEGP- 202

Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNS 179
               L+P  IDQDP+ R+TRD+A R+    G+ KP+     F P L G  GKMS+S P S
Sbjct: 203 -KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPES 259

Query: 180 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHI 238
           AIY+TD  + +K KI K A +GG+ ++E  RKLG   +  +  + L + L EDD EL+ I
Sbjct: 260 AIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEI 318

Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
            +E  +G +L GE K+  A+ + E ++ HQ  R     E+++ +
Sbjct: 319 YEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEA-REILEKY 361

Length = 368

>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  203 bits (519), Expect = 4e-64
 Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 35/298 (11%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEES-QRLARENAKDIIACGFDVTKTFIFSDF 62
           N  L           + D      +    EE  ++  RE A D +A G D  K+ IF   
Sbjct: 29  NWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQS 88

Query: 63  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED-------HIGKVSFPPVQAVPSFPSSF 115
           +       +    ++    + ++  +  F  +         IG +++P +QA        
Sbjct: 89  EV--PEHAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADIL---- 142

Query: 116 PHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH------KPALI--ESSFFPALQG 167
             L+        L+P   DQD +  +TRD+A R  +        P  +  + +  P L G
Sbjct: 143 --LYQA-----TLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDG 195

Query: 168 ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 227
             GKMS SDPNSAI++ D  K I+ KI K A  G   ++  +RK G   EV    +  S 
Sbjct: 196 P-GKMSKSDPNSAIFLLDDPKTIRKKIKKAATDG--PTLIEYRK-GGKPEVCNLFEIYSA 251

Query: 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 285
           F EDD+ LE I+ EY  G +  GE K+ LA+ + E ++  Q  R  + ++       +
Sbjct: 252 FFEDDSILE-IEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDP-AYLDDI 307

Length = 314

>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated

 Score = 85.7 bits (213), Expect = 3e-19
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 29/180 (16%)

Query: 31  SVEESQRLARENAKDIIACGFDVTKT-FIF-SDF----DYVGGAFYKNMVKVAKCVTYNK 84
            +EE +++A  N K   A G D  KT F+  S+F    +Y        ++K+AK  T  +
Sbjct: 80  DLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWL-----LVLKLAKNTTLAR 134

Query: 85  V---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYF 139
               + I G   E+  + K+ +P +Q    F            +L   I    +DQ    
Sbjct: 135 ARRSMTIMGRRMEEPDVSKLVYPLMQVADIF------------YLDVDIAVGGMDQRKIH 182

Query: 140 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 199
            + R+V P++GY KP  I +     L G   KMS S P SAI+V DS + I+ KI K A+
Sbjct: 183 MLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AY 241

Length = 329

>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y)

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 35/253 (13%)

Query: 31  SVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVV 86
           S E          ENAK  +ACG D  K+ I ++ D++    +  +  +      +  + 
Sbjct: 56  SEERKLLSREEVLENAKAQLACGLDPEKSEIVNNSDWLE---HLELAWLLRDLGNHFSLN 112

Query: 87  GIFGFTG----EDHIGKVSF-----PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 137
            +  F            +S      P +QA     +    L    D    L P   DQ  
Sbjct: 113 RMLQFKDVKKRLKQNPGISLGEFTYPLLQA-----ADILLLK--AD----LQPGGSDQWG 161

Query: 138 YFRMTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKIN 195
           +  + RD+A R              P L G  G  KMS S  NSAI++ D  +++  KI 
Sbjct: 162 HIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKI- 220

Query: 196 KYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDA--ELEHIKKEYGAGGMLTGEV 252
           + A++      E+ + L    E+     + L  FL      E E +      G +  G++
Sbjct: 221 QKAYTDPDR--EVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDL 278

Query: 253 KQRLAKVLTELVE 265
           K+  A+ +  L+E
Sbjct: 279 KKAAAEAVNALLE 291

Length = 291

>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed

 Score = 65.5 bits (161), Expect = 3e-12
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 128 LIPCAIDQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPN 178
           L+P   DQ  +  +TRD+A R           P  LI    +    L G T KMS SDPN
Sbjct: 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPN 200

Query: 179 --SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE 236
             + I + D  K I  KI K A +  +   E+   L    EV   +   S    +   +E
Sbjct: 201 DNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALSGE--SIE 257

Query: 237 HIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
            ++ EY AGG   G+ K+ LA+ + E + 
Sbjct: 258 ELEAEYEAGGKGYGDFKKDLAEAVVEFLA 286

Length = 333

>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 15/147 (10%)

Query: 128 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE-------SSFFPALQGETGKMSASDPN 178
           L+P   DQ P    TR++  R    Y    L+E       +   P L G+  KMS S  N
Sbjct: 145 LVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN 203

Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
            AIY++D A  IK K+    ++   +   +  +    +E ++   YL  F  D AE+  +
Sbjct: 204 -AIYLSDDADTIKKKVMS-MYT---DPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAEL 258

Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVE 265
           K  Y  GG+   + K+ L +VL EL+ 
Sbjct: 259 KAHYQRGGLGDVKCKRYLEEVLQELLA 285

Length = 333

>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 22/122 (18%)

Query: 143 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSG 201
           RD+  ++GY K   + +     L G  GKMS S+ N+    V DS   +  KI   AF  
Sbjct: 169 RDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP 225

Query: 202 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 261
                               +K  +F   D  E+E +++E+  G  L  + K+ LA+ LT
Sbjct: 226 DVLEF---------------LKLFTFL--DYEEIEELEEEHAEGP-LPRDAKKALAEELT 267

Query: 262 EL 263
           +L
Sbjct: 268 KL 269

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 269

>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 152 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 196
            KP ++     P L     KMS SDPNSAI++ DS + +  KI K
Sbjct: 238 KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK 282

Length = 383

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PLN02486	383	aminoacyl-tRNA ligase	100.0
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	100.0
KOG2145	397	consensus Cytoplasmic tryptophanyl-tRNA synthetase	100.0
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	100.0
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	100.0
PLN02886	389	aminoacyl-tRNA ligase	100.0
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	100.0
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	100.0
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	100.0
KOG2713	347	consensus Mitochondrial tryptophanyl-tRNA syntheta	100.0
PRK08560	329	tyrosyl-tRNA synthetase; Validated	100.0
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	100.0
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	100.0
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	100.0
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	100.0
KOG2144	360	consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
PRK05912	408	tyrosyl-tRNA synthetase; Validated	100.0
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	100.0
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	100.0
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	99.96
KOG2623	467	consensus Tyrosyl-tRNA synthetase [Translation, ri	99.33
cd00808	239	GluRS_core catalytic core domain of discriminating	98.85
cd00802	143	class_I_aaRS_core catalytic core domain of class I	98.63
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	97.91
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	97.55
cd00674	353	LysRS_core_class_I catalytic core domain of class	96.81
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	93.5
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	92.76
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	92.58
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	92.3
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	92.17
cd09287	240	GluRS_non_core catalytic core domain of non-discri	91.69
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	91.3
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	90.7
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	90.12
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	89.68
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	89.61
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	89.36
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	89.29
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	89.18
PRK11893	511	methionyl-tRNA synthetase; Reviewed	88.7
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	88.46
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	87.98
KOG0432	995	consensus Valyl-tRNA synthetase [Translation, ribo	87.61
PF01921	360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	87.46
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	87.43
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	87.38
PLN02381	1066	valyl-tRNA synthetase	86.92
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	86.74
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	86.56
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	86.36
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	86.3
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	86.25
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	86.25
PLN02286	576	arginine-tRNA ligase	86.07
PLN02843	974	isoleucyl-tRNA synthetase	85.98
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	85.23
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	84.87
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	84.47
COG0215	464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	84.25
PLN02943	958	aminoacyl-tRNA ligase	84.19
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	83.5
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	82.63
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	82.59
PLN02959	1084	aminoacyl-tRNA ligase	82.52
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	82.24
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	82.09
PLN02563	963	aminoacyl-tRNA ligase	81.69
PRK12268	556	methionyl-tRNA synthetase; Reviewed	81.61
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	81.07
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	80.52
PLN02882	1159	aminoacyl-tRNA ligase	80.19

>PLN02486 aminoacyl-tRNA ligase

Probab=100.00  E-value=9.8e-73  Score=534.80  Aligned_cols=287  Identities=87%  Similarity=1.355  Sum_probs=270.4

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   81 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   81 (293)
                      ++ +|||++.|+.++|+|||+|+++.+..++|++++++++++++|+|||+||+|++||.|++|...+||..+++++|++|
T Consensus        97 ~~-~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~~~~~~~~~~l~r~~t  175 (383)
T PLN02486         97 FT-KYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVT  175 (383)
T ss_pred             HH-HHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHhHhHHHHHHHHHhhCc
Confidence            57 89999889999999999999998669999999999999999999999999999999998865568999999999999


Q ss_pred             ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccc
Q 022694           82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF  161 (293)
Q Consensus        82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~  161 (293)
                      ++++++.+|+.++.++|+++||+|||||+|+.+||.++....+++|+||||.||+||+++|||+|+|||+.+|+++++++
T Consensus       176 ~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~  255 (383)
T PLN02486        176 LNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRF  255 (383)
T ss_pred             HHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCCcceecccc
Confidence            99999999998888999999999999999988887665555568899999999999999999999999999999999999


Q ss_pred             cccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHh
Q 022694          162 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE  241 (293)
Q Consensus       162 lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~  241 (293)
                      +|||+|+++|||||.|||+|+|+|+|++|++||++||||||+.+.+++++.||||++|++|+|+.+|.++++++++|+++
T Consensus       256 lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~  335 (383)
T PLN02486        256 FPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKE  335 (383)
T ss_pred             ccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHH
Confidence            99999987899999999999999999999999999999999999999999999999999999999997667899999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCC
Q 022694          242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP  289 (293)
Q Consensus       242 y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~  289 (293)
                      |++|+++|++||+.|++.|+++|+|+|+||++++++.|++++..++++
T Consensus       336 y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~  383 (383)
T PLN02486        336 YGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP  383 (383)
T ss_pred             hccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999999999999999999999999998874

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.7e-71  Score=505.54  Aligned_cols=264  Identities=29%  Similarity=0.433  Sum_probs=234.9

Q ss_pred             HH-HHhhcCCcEEEEeecccchhhcccCh-HHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY-LQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~-lQ~~~g~~~~I~iaD~ha~~~~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      .| +|+.+ ..+++.|||+||+|.+..++ +.+++++++++++||||||||+|++||.||++++|    |.+.   .+++
T Consensus        30 ~v~~q~~~-~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l~~~~~~ge  108 (314)
T COG0180          30 WVLLQEEY-YECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGE  108 (314)
T ss_pred             HHHHhccc-CceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchHHHHHHHHHHccCcHHH
Confidence            55 55542 45677779999999864333 88999999999999999999999999999999987    3443   4899


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-----
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG-----  150 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n-----  150 (293)
                      |.|+++||++..+.+  .++++|++.||+||||        |||.|++   |+||||.||+||+|||||||+|||     
T Consensus       109 l~r~~~fKdk~~~~~--~~~~~Gl~~YPvlqAA--------DILl~~a---~~VPVG~DQ~qHleLtRDiA~rfn~~y~~  175 (314)
T COG0180         109 LERMTQFKDKSAKKG--ESIPIGLLTYPVLQAA--------DILLYQA---TLVPVGEDQDQHLELTRDIARRFNHLYGE  175 (314)
T ss_pred             HHhhcCcchhhhccc--ccccccchhccHHHHH--------HhhhccC---CeeccCCCchHHHHHHHHHHHHHHhhcCC
Confidence            999999999988764  4889999999999999        8999999   589999999999999999999999     


Q ss_pred             -CCCccccccc--ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694          151 -YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  227 (293)
Q Consensus       151 -~~~p~~l~~~--~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~  227 (293)
                       +++|..+++.  +||||+|| +|||||+|||+|+|+|+|++|++||++ |+||| .+..++++ ||+|++||+|.|+.+
T Consensus       176 ~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~td~-~~~~~~~~-~g~Pe~~~l~~~~~~  251 (314)
T COG0180         176 VFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AATDG-PTLIEYRK-GGKPEVCNLFEIYSA  251 (314)
T ss_pred             ccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hccCC-CCccccCC-CCCCCcchHHHHHHH
Confidence             6899998876  99999998 999999999999999999999999999 99998 44445555 999999999999999


Q ss_pred             eecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694          228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  287 (293)
Q Consensus       228 ~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~  287 (293)
                      |+. +++.+++++.|++|+++||+||+.|++.|+++|+|||+||++++++  +++++|..+.
T Consensus       252 ~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~  312 (314)
T COG0180         252 FFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGA  312 (314)
T ss_pred             hcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccC
Confidence            964 5667799999999999999999999999999999999999999887  8999987764

>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.5e-68  Score=473.15  Aligned_cols=289  Identities=66%  Similarity=1.110  Sum_probs=281.8

Q ss_pred             CcchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccc-hhhhhhHHhhhhe
Q 022694            1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKC   79 (293)
Q Consensus         1 ~~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~   79 (293)
                      +|| ||||+.++++++|+++|.++++....+.++..+.+++++++++|||+||++|+||.+.++.+ +.++.++.++++.
T Consensus       108 ift-KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~g~~~fy~nivki~k~  186 (397)
T KOG2145|consen  108 IFT-KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKC  186 (397)
T ss_pred             HHH-HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEechhhccCcHHHHHHHHHhhe
Confidence            588 99999999999999999999998559999999999999999999999999999999999986 5999999999999


Q ss_pred             eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      +|+++++..+||+++.++|++.+|..|||++|+++||.|+....|++|++|+.+||+|+++++||+|+|+|+++|+.+++
T Consensus       187 vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~Kpali~s  266 (397)
T KOG2145|consen  187 VTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYPKPALIHS  266 (397)
T ss_pred             echhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCCCcceeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHH
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK  239 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~  239 (293)
                      .++|.|+|.+.|||.|+|||+|||+|++++|++||.+|||+|++.++|+|++.||||+|++.|+||++|.+++.++|+++
T Consensus       267 tffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r  346 (397)
T KOG2145|consen  267 TFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIR  346 (397)
T ss_pred             hhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             HhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCC
Q 022694          240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN  290 (293)
Q Consensus       240 ~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~  290 (293)
                      .+|.+|.|..|++|+.+.+.|.++++.+|++|++++++.|++++..+++++
T Consensus       347 ~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~~  397 (397)
T KOG2145|consen  347 KDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLSF  397 (397)
T ss_pred             hhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCCC
Confidence            999999999999999999999999999999999999999999999988763

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=3.3e-69  Score=509.63  Aligned_cols=274  Identities=37%  Similarity=0.613  Sum_probs=251.2

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   81 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   81 (293)
                      ++ +|||+ +|+.++|+||||||++++..+++++++++++++++|+|||+||+|++||.||+|++  ++..++.+++.+|
T Consensus        89 ~~-~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~--~~~l~~~l~~~~t  164 (368)
T PRK12285         89 EL-KWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIK--VYDLAFELAKKVN  164 (368)
T ss_pred             HH-HHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchHH--HHHHHHHHHhhCc
Confidence            45 78999 69999999999999998668999999999999999999999999999999999974  7788889999999


Q ss_pred             ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCcc----CCCCcccc
Q 022694           82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALI  157 (293)
Q Consensus        82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~----n~~~p~~l  157 (293)
                      ++++++.+|++++.|+|+++||+|||||+|++.+..  .+++   |+||||+||+||+|+||++|+||    |+++|.++
T Consensus       165 ~~~l~r~~~f~~~~~~g~~~YP~lQaADil~~~~~~--~~~~---~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l  239 (368)
T PRK12285        165 FSELKAIYGFTGETNIGHIFYPATQAADILHPQLEE--GPKP---TLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSST  239 (368)
T ss_pred             HHHHHHhhCCCCCCchhhhhhhHHHHHHHHhhcccc--cCCc---eEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhH
Confidence            999999999988899999999999999544332221  2555   79999999999999999999999    78999999


Q ss_pred             cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee-cChHHHH
Q 022694          158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELE  236 (293)
Q Consensus       158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~e  236 (293)
                      +++++|||+|  +|||||+|+|+|+|+|+|++|++||++ |+||++.+.+++++.||||++|++++|+++|. .++++++
T Consensus       240 ~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~e  316 (368)
T PRK12285        240 YHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELK  316 (368)
T ss_pred             hhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHH
Confidence            9999999999  699999998999999999999999999 99999999888999999999999999999986 4678999


Q ss_pred             HHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694          237 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  288 (293)
Q Consensus       237 ei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~  288 (293)
                      +++++|++|+++|++||+.|++.|+++|+|+|+|++++++ .|++++...++
T Consensus       317 ei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~  367 (368)
T PRK12285        317 EIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL  367 (368)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence            9999999999999999999999999999999999999999 89998877653

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=4.6e-67  Score=491.13  Aligned_cols=264  Identities=26%  Similarity=0.348  Sum_probs=237.9

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchh--hh-----hhHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FY-----KNMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~--~~-----~~~~~   75 (293)
                      +|  ||++  +.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++|.  +|     ..+.+
T Consensus        25 ~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~~~el~~~l~~~~~~~~  101 (333)
T PRK00927         25 NWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGE  101 (333)
T ss_pred             HHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCchhHHHHHHHHhhhhHHH
Confidence            67  9995  6677888999999975 699999999999999999999999999999999999871  22     25789


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY----  151 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~----  151 (293)
                      |+|++++++....  +.++.++|+++||+||||        |||.+++|   +||||.||+||+||||++|+|||+    
T Consensus       102 l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaa--------Dil~~~~d---ivpvG~DQ~~h~elaRdia~~~n~~~~~  168 (333)
T PRK00927        102 LERMTQFKDKSAK--QKENVSAGLFTYPVLMAA--------DILLYKAD---LVPVGEDQKQHLELTRDIARRFNNLYGE  168 (333)
T ss_pred             HHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHH--------HHHhcCCC---EEeeccchHHHHHHHHHHHHHhhhhccc
Confidence            9999999987543  246789999999999999        89999995   799999999999999999999995    


Q ss_pred             --CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694          152 --HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  224 (293)
Q Consensus       152 --~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  224 (293)
                        ++|..++   +++||||+|+++|||||+++  |+|+|+|+|++|++||++ |+||+..+.+++++.|++|++|++++|
T Consensus       169 ~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~~~  247 (333)
T PRK00927        169 VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTI  247 (333)
T ss_pred             cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCCCCCcccccccCCCCCCccccHHHH
Confidence              5787665   38999999987799999986  899999999999999999 999998877777889999999999999


Q ss_pred             eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694          225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  287 (293)
Q Consensus       225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~  287 (293)
                      +++|+  ++++++++++|.+|+++|++||+.||+.|+++|+|+|+||++++++  +|+++|..|.
T Consensus       248 ~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~  310 (333)
T PRK00927        248 YSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGA  310 (333)
T ss_pred             HHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            99994  6789999999999999999999999999999999999999999876  9999998764

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=100.00  E-value=8.7e-66  Score=481.50  Aligned_cols=263  Identities=26%  Similarity=0.363  Sum_probs=233.4

Q ss_pred             HHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhh
Q 022694            6 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK   78 (293)
Q Consensus         6 ~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r   78 (293)
                      |||++ |+ ++|+||||||++++..+++++++++++++++|+|||+||+|++||.||+|+++    |+|.   ++.++.|
T Consensus        29 ~lQ~~-~~-~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e~~~l~~~l~~~~~~~~l~r  106 (333)
T PRK12282         29 ALQNE-HE-QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLER  106 (333)
T ss_pred             HHHhC-CC-EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchHHHHHHHHHHhhchHHHHhh
Confidence            69996 44 68888999999975589999999999999999999999999999999999876    6665   4679999


Q ss_pred             eeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC--CCccc
Q 022694           79 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKPAL  156 (293)
Q Consensus        79 ~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~--~~p~~  156 (293)
                      +++++++....++.++.++|+++||+||||        |||.+++|   +||||.||+||+||||++|+|||+  .+|..
T Consensus       107 ~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~d---~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~  175 (333)
T PRK12282        107 NPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKAT---LVPVGDDQLPMIEQTREIVRRFNSLYGTDVL  175 (333)
T ss_pred             chHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCCC---EEEeccccHHHHHHHHHHHHHHhhhcCCccc
Confidence            999998766555567789999999999999        89999995   899999999999999999999993  33332


Q ss_pred             -----c--cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee
Q 022694          157 -----I--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL  229 (293)
Q Consensus       157 -----l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~  229 (293)
                           +  .+++||||+|+ +|||||+++ +|+|+|+|++|++||++ |+||+..   .+++.+++|+++++++|+++|.
T Consensus       176 ~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~~~---~~~~~~~~~~~~~l~~~~~~f~  249 (333)
T PRK12282        176 VEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDPNH---IRVEDPGKVEGNVVFTYLDAFD  249 (333)
T ss_pred             cCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCCCC---ccCCCCCCCCcChHHHHHHHhC
Confidence                 2  36899999985 799999975 99999999999999999 9998743   3467899999999999999996


Q ss_pred             cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694          230 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  287 (293)
Q Consensus       230 ~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~  287 (293)
                      .+++++++++++|.+|+++|++||+.|++.|+++|+|+|+||+++.++  +|+++|..+.
T Consensus       250 ~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~  309 (333)
T PRK12282        250 PDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGS  309 (333)
T ss_pred             CCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999876  8999998764

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=8.5e-66  Score=481.09  Aligned_cols=259  Identities=17%  Similarity=0.234  Sum_probs=229.8

Q ss_pred             HHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhh
Q 022694            6 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK   78 (293)
Q Consensus         6 ~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r   78 (293)
                      |+|+.+|+.++|+||||||+|. ..+++++++++++++++|+|||+||+|++||.||++++|    |.+.   .+++|+|
T Consensus        30 ~lq~~~~~~~~~~IADlHalt~-~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~~~eL~~il~~~t~~g~L~R  108 (332)
T PRK12556         30 QMAKNYEGKALYFIADYHALNA-VHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNR  108 (332)
T ss_pred             HHHHhcCCeEEEEEechhhccC-CCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchHHHHHHHHHHccchHHHHHh
Confidence            4888789888888999999985 489999999999999999999999999999999999987    2233   3789999


Q ss_pred             eeeecceeeec-----cccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC---
Q 022694           79 CVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---  150 (293)
Q Consensus        79 ~~t~~~~~~~~-----g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n---  150 (293)
                      +++||++....     |+.++.++|+++||+||||        |||.|++|   +||||+||+||+||||++|+|||   
T Consensus       109 ~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~d---~VpvG~DQ~qhleLtRdiA~rfn~~y  177 (332)
T PRK12556        109 AHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQAT---HVPVGKDQIQHIEIARDIATYFNHTF  177 (332)
T ss_pred             ccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccCC---EEEeccccHHHHHHHHHHHHHHHHhc
Confidence            99999886532     2345679999999999999        89999995   89999999999999999999999   


Q ss_pred             ---CCCcccc---cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694          151 ---YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  224 (293)
Q Consensus       151 ---~~~p~~l---~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  224 (293)
                         +++|..+   +++++|||+|  +|||||++| +|+|+|+|++|++||++ |+||+...     +.+++|++||+++|
T Consensus       178 g~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k-a~Td~~~~-----~~~~~p~~~~l~~i  248 (332)
T PRK12556        178 GDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK-IKTDSSLP-----NEPKDPETSALFTI  248 (332)
T ss_pred             cccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-hccCCCcc-----cCCCCcchhHHHHH
Confidence               5778766   5899999998  599999975 89999999999999999 99998642     35789999999999


Q ss_pred             eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694          225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  287 (293)
Q Consensus       225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~  287 (293)
                      +++|.. ++++++++++|.+ +++|++||+.||+.|+++|+|||+|++++.++  +|+++|+.|.
T Consensus       249 ~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~  311 (332)
T PRK12556        249 YKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGA  311 (332)
T ss_pred             HHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999853 4689999999987 58999999999999999999999999999876  8999998763

>PLN02886 aminoacyl-tRNA ligase

Probab=100.00  E-value=1.8e-65  Score=483.76  Aligned_cols=261  Identities=21%  Similarity=0.281  Sum_probs=229.9

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      +|  ||+  |+.++|+||||||+|. ..+++++++++++++++|+|||+||+|++||.||++++|    |.+.   .+++
T Consensus        70 ~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~  146 (389)
T PLN02886         70 NWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGW  146 (389)
T ss_pred             HHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHH
Confidence            56  998  5556777899999997 489999999999999999999999999999999999987    3333   3789


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY----  151 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~----  151 (293)
                      |+|++|||++.+..+ .++.++|+|+||+||||        |||+|++|   +||||+||+||+|||||+|+|||+    
T Consensus       147 L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VPVG~DQ~qH~eLtRdiA~rfN~~y~~  214 (389)
T PLN02886        147 LNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVPVGEDQKQHLELTRDIAERVNNLYGG  214 (389)
T ss_pred             HHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEEEccchHHHHHHHHHHHHHHhhhccc
Confidence            999999999987654 35689999999999999        89999996   799999999999999999999985    


Q ss_pred             --------------CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHc
Q 022694          152 --------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKL  212 (293)
Q Consensus       152 --------------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~  212 (293)
                                    ++|..++   +++||||+|+++|||||+|+  |+|+|+|+|++|++||++ |+||+...++  ++.
T Consensus       215 ~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~-a~TD~~~~i~--~~~  291 (389)
T PLN02886        215 RKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKR-CKTDSFPGLE--FDN  291 (389)
T ss_pred             cccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhc-CCCCCCCCcc--CCC
Confidence                          3565555   45899999887899999985  799999999999999999 9999986543  467


Q ss_pred             CCCeeeeecceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694          213 GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  287 (293)
Q Consensus       213 ~~~p~~~~~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~  287 (293)
                      +++|++++++.+|..+  ++.++++++++|.  .+++++||+.|++.|+++|+|||+||+++.+|  ||+++|.++.
T Consensus       292 p~~p~v~nl~~i~~~~--~~~~~eei~~~~~--~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~Ga  364 (389)
T PLN02886        292 PERPECNNLLSIYQLV--TGKTKEEVLAECG--DMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGA  364 (389)
T ss_pred             CCCcccccHHHHHHHc--cCCCHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            7899999999999988  4678999999997  36999999999999999999999999999876  9999998763

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=8.2e-65  Score=482.39  Aligned_cols=258  Identities=18%  Similarity=0.180  Sum_probs=224.3

Q ss_pred             HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhhe
Q 022694            7 LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAKC   79 (293)
Q Consensus         7 lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r~   79 (293)
                      +|+..|+.++++||||||+|. ..+++.+++++++++++|+|||+||+|++||.||++++|    |.+.   .+++|+|+
T Consensus        30 lq~q~~~~~~~~IADlHAlT~-~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~QSdvpeh~EL~wiL~~it~~g~L~Rm  108 (431)
T PRK12284         30 ASRQPGVESFYFLADYHALIK-CDDPARIQRSTLEIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRA  108 (431)
T ss_pred             HHHhCCCcEEEEeechhhccC-CCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCcchhHHHHHHHHHhhhhHHHHHhh
Confidence            665457788888899999995 489999999999999999999999999999999999987    3333   47999999


Q ss_pred             eeecceeeec---ccc--CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC---
Q 022694           80 VTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---  151 (293)
Q Consensus        80 ~t~~~~~~~~---g~~--~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~---  151 (293)
                      ++||++....   |+.  ++.++|+|+||+||||        |||+|++|   +||||.||+||+|||||||+|||+   
T Consensus       109 ~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad---~VPVG~DQ~qHlELaRdIA~rFN~~yg  177 (431)
T PRK12284        109 HAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH---KVPVGRDQIQHIEMARDIAQRFNHLYG  177 (431)
T ss_pred             hHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC---EEEEcchhHHHHHHHHHHHHHHhhhcC
Confidence            9999875332   222  3479999999999999        89999996   799999999999999999999984   


Q ss_pred             ----CCccccc---ccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694          152 ----HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  224 (293)
Q Consensus       152 ----~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  224 (293)
                          +.|..+.   +++||||+|  +|||||++ |+|+|+|+|++|++||++ |+||+..+.     .+++|++||++.|
T Consensus       178 ~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-A~TDs~~~~-----~~~~pe~snLl~i  248 (431)
T PRK12284        178 GEFFVLPEAVIEESVATLPGLDG--RKMSKSYD-NTIPLFAPREELKKAIFS-IVTDSRAPG-----EPKDTEGSALFQL  248 (431)
T ss_pred             CcccCCCccccccccccccCCCC--ccccCCCC-CEeeecCCHHHHHHHHhc-CCCCCCCCC-----CCCCCCcchHHHH
Confidence                3454433   689999998  69999996 499999999999999999 999987532     3588999999999


Q ss_pred             eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694          225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  287 (293)
Q Consensus       225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~  287 (293)
                      +++|+. .+++++++++|.+| ++|++||+.|++.|+++|+|||+||+++.++  ||++||.++.
T Consensus       249 ~~~~~~-~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga  311 (431)
T PRK12284        249 YQAFAT-PEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGA  311 (431)
T ss_pred             HHHhCC-cchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999853 46799999999844 9999999999999999999999999999886  8999998763

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=100.00  E-value=1.7e-64  Score=472.47  Aligned_cols=263  Identities=35%  Similarity=0.531  Sum_probs=227.8

Q ss_pred             HHHHhhcCCcEEEEeecccchhhccc-ChHHHHHHHHhcccchhhcccCCCceeEeecccccchh----hhh---hHHhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA----FYK---NMVKV   76 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~-~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~----~~~---~~~~l   76 (293)
                      +++|. .|+.++|+||||||+|+++. +++.++.++++++++|+|||+||+|++||.||+|++++    .+.   ++.+|
T Consensus        27 ~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~e~~el~~~l~~~~t~~~l  105 (328)
T TIGR00233        27 KWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYPEHYELAWLLSCQVTFGEL  105 (328)
T ss_pred             HHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcHHHHHHHHHHHccCCHHHH
Confidence            45775 59999999999999997532 78899999999999999999999999999999998652    111   35666


Q ss_pred             hheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC------
Q 022694           77 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG------  150 (293)
Q Consensus        77 ~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n------  150 (293)
                      .|++++++...    .++.++|+|+||+||||        |||.+++|   +||||.||+||+||||++|+|||      
T Consensus       106 ~r~~~~k~k~~----~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vpvG~DQ~~h~elaRdia~r~n~~~~~~  170 (328)
T TIGR00233       106 KRMTQFKDKSQ----AENVPIGLFSYPVLQAA--------DILLYQAD---LVPVGIDQDQHLELTRDLAERFNKKFKNF  170 (328)
T ss_pred             HhccCcchhcc----CCCCCchhhcchHHHHh--------hhhhcCCC---eeecccccHHHHHHHHHHHHHhhhhcCcc
Confidence            77777766531    24579999999999999        89999996   79999999999999999999999      


Q ss_pred             CCCcccccc---cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCch-hHHHHHHcCCCeeeeecceeee
Q 022694          151 YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGANLEVDIPVKYLS  226 (293)
Q Consensus       151 ~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~-~~~~~~~~~~~p~~~~~~~~l~  226 (293)
                      +++|.++++   |.||||+|  +|||||+|||+|+|+|+|++|++||++ |+||++. +.+++++.+++|.++++++++.
T Consensus       171 f~~P~~l~~~~~~~l~gl~~--~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~~~~~~~~~~~g~~~l~~i~~~~~  247 (328)
T TIGR00233       171 FPKPESLISKFFPRLMGLSG--KKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGRVTLFEHREKGGVPNLLVIYQYLS  247 (328)
T ss_pred             cCCChhhhccccCCCCCCCC--CcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCCCcccCcCCCCCCchHHHHHHHhh
Confidence            688988875   56777776  699999999999999999999999999 9999873 4444556778888888888888


Q ss_pred             eeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccc
Q 022694          227 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  286 (293)
Q Consensus       227 ~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~  286 (293)
                      ++..+++++++++++|.+|+++|++||+.|++.|+++|+|||+|++++.+++|+++|..+
T Consensus       248 ~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g  307 (328)
T TIGR00233       248 FFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPG  307 (328)
T ss_pred             ccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            886656789999999999999999999999999999999999999999999999999875

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=8.9e-64  Score=471.74  Aligned_cols=262  Identities=19%  Similarity=0.218  Sum_probs=228.3

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      +|  +|+  ++.++|+||||||+|++..+++.+++++++++++|+|||+||+|+.||.||++++|    |.+.   .+++
T Consensus        26 ~wv~lq~--~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~eh~eL~wil~~~t~~~~  103 (398)
T PRK12283         26 NWVKLQH--EYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGW  103 (398)
T ss_pred             HHHHHhc--CCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCchHHHHHHHHHHhhccHHH
Confidence            67  455  55678888999999975469999999999999999999999999999999999987    3333   4899


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY----  151 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~----  151 (293)
                      |.|++|+|++..+.+..++.++|+++||+||||        |||+|++|   +||||.||+||+|||||||+|||+    
T Consensus       104 L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a~---iVPVG~DQ~qHleLaRdIA~rfN~~yg~  172 (398)
T PRK12283        104 LERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRAG---LVPVGEDQVPHVEMTREIARRFNHLYGR  172 (398)
T ss_pred             HHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCCC---EeeeccccHHHHHHHHHHHHHHHHhcCc
Confidence            999999999876532235679999999999999        89999995   799999999999999999999875    


Q ss_pred             ------------------------------------------------------------------------CCcccc--
Q 022694          152 ------------------------------------------------------------------------HKPALI--  157 (293)
Q Consensus       152 ------------------------------------------------------------------------~~p~~l--  157 (293)
                                                                                              +.|..+  
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~  252 (398)
T PRK12283        173 EPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKIILPEPQALLT  252 (398)
T ss_pred             cccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCcccCCCccccc
Confidence                                                                                    233332  


Q ss_pred             cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHH
Q 022694          158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEH  237 (293)
Q Consensus       158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ee  237 (293)
                      .+++||||+|  +|||||++ ++|+|+|+|++|++||++ |+||+..   +++..||+|++||+++|+++|+ ++++.++
T Consensus       253 ~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-a~TDs~~---~~~~~~g~Pe~~nl~~i~~~~~-~~~~~~~  324 (398)
T PRK12283        253 EASKMPGLDG--QKMSKSYG-NTIGLREDPESVTKKIRT-MPTDPAR---VRRTDPGDPEKCPVWQLHQVYS-DEETKEW  324 (398)
T ss_pred             CCCcccCCCC--CcCCCCCC-CeeeCcCCHHHHHHHHHh-CCCCCcc---cccCCCCCCCcCHHHHHHHHhC-CChHHHH
Confidence            2589999988  69999976 599999999999999999 9998653   4567789999999999999994 3457899


Q ss_pred             HHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694          238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  287 (293)
Q Consensus       238 i~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~  287 (293)
                      +.++|++|+++|++||+.|++.|+++|+|||+|++++.++  +|+++|+.+.
T Consensus       325 i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~  376 (398)
T PRK12283        325 VQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGC  376 (398)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876  8999998763

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8e-63  Score=437.86  Aligned_cols=263  Identities=21%  Similarity=0.304  Sum_probs=234.5

Q ss_pred             hHH--HHhhcC--CcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---h
Q 022694            4 NRY--LQDAFK--VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---N   72 (293)
Q Consensus         4 ~k~--lQ~~~g--~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~   72 (293)
                      .+|  |||.++  ..+++.|+|+||+|. +.++.++|+++.++++.+||||+||+|+.+|.||++++|    |.+.   .
T Consensus        36 ~~Wv~LQ~~~d~~~~~~f~vvDlHaITv-p~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~Vpqh~el~WlLsslt~  114 (347)
T KOG2713|consen   36 KPWVQLQNEYDKNILVLFSVVDLHAITV-PQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDVPQHAELSWLLSSLTT  114 (347)
T ss_pred             hHHHHHHHHhcCCceEEEEEeeceeecC-CCChHHHHHHHHHHHHHHHHhccCcccceeeeeccchHHHHHHHHHHhccc
Confidence            368  998754  457777899999998 577779999999999999999999999999999999987    3333   4


Q ss_pred             HHhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC-
Q 022694           73 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-  151 (293)
Q Consensus        73 ~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~-  151 (293)
                      +++|+||++||+++.+.+ .++.++|+|+||+||||        |||+|++   |+||||+||.||+||+|++|++||. 
T Consensus       115 mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYks---ThVPVGeDQsQHleL~r~lA~~fN~~  182 (347)
T KOG2713|consen  115 MGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKS---THVPVGEDQSQHLELARHLAQAFNKT  182 (347)
T ss_pred             hHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhcc---ccccCCccHHHHHHHHHHHHHHHhhh
Confidence            899999999999998654 46789999999999999        8999999   5999999999999999999999995 


Q ss_pred             ------CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694          152 ------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  220 (293)
Q Consensus       152 ------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~  220 (293)
                            |.|..+.   +.+|++|..|.+|||||+||  ++|+|+|+|+.|.+||+| |.||....  ..++++++|+++|
T Consensus       183 Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k-a~TD~~~~--vtYd~~~RpgvsN  259 (347)
T KOG2713|consen  183 YGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKK-AQTDNTSG--VTYDPANRPGVSN  259 (347)
T ss_pred             ccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHH-Hhcccccc--eeeCCccccchhH
Confidence                  6776654   58999999999999999986  799999999999999999 99996543  3488999999999


Q ss_pred             cceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          221 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       221 ~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                      +..+++..  ++.+.+|+.+.+++  ++++++|..||++|++.|+|||++++++..+  ||+++|+.+
T Consensus       260 Llni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~G  323 (347)
T KOG2713|consen  260 LLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEG  323 (347)
T ss_pred             HHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHh
Confidence            99999888  56789999998774  8999999999999999999999999999886  999999876

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=2e-62  Score=459.19  Aligned_cols=247  Identities=25%  Similarity=0.354  Sum_probs=222.3

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheeeec
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYN   83 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~~   83 (293)
                      +|||+ +|+.++|+||||||+++++.+++++++++++++++|+|||+||+|+.||.||+|++| .||..+.+|++.+++.
T Consensus        55 ~~lq~-~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~  133 (329)
T PRK08560         55 ADLQK-AGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLA  133 (329)
T ss_pred             HHHHH-CCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHH
Confidence            67999 599999999999999986589999999999999999999999999999999999976 6888999999999999


Q ss_pred             ceeee---cccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           84 KVVGI---FGFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        84 ~~~~~---~g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      ++.+.   .++. ++.++|+|+||+||||        |||.+++|   +||||.||+||+++||++|+|||+++|.++++
T Consensus       134 ~l~r~~~~~~~~~~~~~~g~l~YP~lqaa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~  202 (329)
T PRK08560        134 RARRSMTIMGRRMEEPDVSKLVYPLMQVA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCIHT  202 (329)
T ss_pred             HHHHhhhhhcccCCCCCHHHHHHHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEEEc
Confidence            88874   2332 3459999999999999        89999996   79999999999999999999999999999999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecC--------
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED--------  231 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~--------  231 (293)
                      ++||||+|+++|||||+|+|+|+|+|+|++|++||++ |+||++           +|+.++++.|++++...        
T Consensus       203 ~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~KI~k-A~t~~~-----------~~~~n~v~~~~~~~~~~~~~~~~~~  270 (329)
T PRK08560        203 PLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AYCPPG-----------EVEGNPVLEIAKYHIFPRYDPFVIE  270 (329)
T ss_pred             CccCCCCCCCCCCcCCCCCCeecccCCHHHHHHHHHh-ccCCCC-----------CcCCCcHHHHHHHHhhccccceEEe
Confidence            9999999987799999988899999999999999999 999763           45566777887776422        


Q ss_pred             ----------hHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694          232 ----------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  275 (293)
Q Consensus       232 ----------~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~  275 (293)
                                ++++++++++|++|+++|++||++||++|+++|+|||+++++-.
T Consensus       271 r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~  324 (329)
T PRK08560        271 RPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEGP  324 (329)
T ss_pred             chhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence                      26789999999999999999999999999999999999998743

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=100.00  E-value=4.2e-60  Score=434.57  Aligned_cols=240  Identities=39%  Similarity=0.588  Sum_probs=210.6

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchh----hhh---hHHhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA----FYK---NMVKVA   77 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~----~~~---~~~~l~   77 (293)
                      +|||++ |+.++|+|||+||+|++..+++++++++++++++|+|||+||+|++||.||++++|.    .+.   ++.+|.
T Consensus        25 ~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~~~l~~~l~~~~~~~~l~  103 (280)
T cd00806          25 VWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELE  103 (280)
T ss_pred             HHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHHHHHHHHHHhCcCCHHHHH
Confidence            569996 999999999999999753599999999999999999999999999999999998651    121   356667


Q ss_pred             heeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC------C
Q 022694           78 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG------Y  151 (293)
Q Consensus        78 r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n------~  151 (293)
                      |+++|+++.+.   .++.++|+++||+||||        |||.+++   |+||||.||+||+++||++|+|||      +
T Consensus       104 r~~~fk~~~~~---~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~  169 (280)
T cd00806         104 RMTGFKDKSAQ---GESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGIDQDPHLELTRDIARRFNKLYGEIF  169 (280)
T ss_pred             hccchhhhhcc---CCCCcchhhcchHHHHh--------hhhhccC---CEEeeccccHHHHHHHHHHHHHhcccccccc
Confidence            77777665442   35789999999999999        8999998   589999999999999999999999      6


Q ss_pred             CCcccccc--cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee
Q 022694          152 HKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL  229 (293)
Q Consensus       152 ~~p~~l~~--~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~  229 (293)
                      ++|..+++  ++||||+|+++|||||+++|+|+|+|+|++|++||++ |+||+..+  ++++.+++|++++++.|+++|.
T Consensus       170 ~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~--~~~~~~~~~~~~~l~~~~~~~~  246 (280)
T cd00806         170 PKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT--EHRRDGGGPGVSNLVEIYSAFF  246 (280)
T ss_pred             CCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc--eecCCCCCCCcChHHHHHHHHh
Confidence            89999888  9999999987899999997899999999999999999 99998864  5588999999999999999875


Q ss_pred             -cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHH
Q 022694          230 -EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL  263 (293)
Q Consensus       230 -~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~  263 (293)
                       .+.++++++ ++|+.|++++++||+.||+.|+++
T Consensus       247 ~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~  280 (280)
T cd00806         247 NDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF  280 (280)
T ss_pred             CCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence             345566666 899999999999999999999863

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2.1e-58  Score=437.73  Aligned_cols=245  Identities=21%  Similarity=0.301  Sum_probs=211.4

Q ss_pred             HHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch--hhhhhHHhhhhee
Q 022694            6 YLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKCV   80 (293)
Q Consensus         6 ~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~~   80 (293)
                      +||++ |+.++|+||||||+++++  .++++++++++++++.|+|||+||+|+.||.||+| ++|  .||..+..+++.+
T Consensus        93 ~lq~~-G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~  171 (383)
T PTZ00126         93 KLTKA-GCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSF  171 (383)
T ss_pred             HHHhC-CCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccC
Confidence            49994 999999999999999865  79999999999999999999999999999999985 454  6888888999999


Q ss_pred             eecceeee---cccc--CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC-CCc
Q 022694           81 TYNKVVGI---FGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKP  154 (293)
Q Consensus        81 t~~~~~~~---~g~~--~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~-~~p  154 (293)
                      |++++++.   +++.  ++.++|+|+||+||||        ||+.+++|   +||||.||+||++||||+|++||+ ++|
T Consensus       172 tl~r~~r~~~~~~r~~~~~~~~g~l~YP~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~~  240 (383)
T PTZ00126        172 NITRIKRCSQIMGRSEGDEQPCAQILYPCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKKP  240 (383)
T ss_pred             CHHHHHhhhhhhccccCCCCCchhhhhhHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCc
Confidence            99888643   2332  3468999999999999        89999997   699999999999999999999996 678


Q ss_pred             ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee-------
Q 022694          155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-------  227 (293)
Q Consensus       155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~-------  227 (293)
                      .++++|+||||+++++|||||+||++|+|+|+|++|++|||+ |||+++..       ++||.+    .|+++       
T Consensus       241 ~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I~kKI~k-A~t~p~~~-------~~npv~----~~~~~~~~~~~~  308 (383)
T PTZ00126        241 IILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK-AYCPPGVI-------EGNPIL----AYFKSIVFPAFN  308 (383)
T ss_pred             eeecccccccCCCCCCCCCcCCCCCeecCCCCHHHHHHHHHh-CcCCCCCC-------CCCcch----hhhhhccccccc
Confidence            888999999996546899999999999999999999999999 99987532       355544    44432       


Q ss_pred             -ee-c---------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694          228 -FL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  274 (293)
Q Consensus       228 -~~-~---------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~  274 (293)
                       |. .         ++.++++++++|++|.++|++||++||++|+++|+|||++++.-
T Consensus       309 ~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~  366 (383)
T PTZ00126        309 SFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNN  366 (383)
T ss_pred             ceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             21 0         23589999999999999999999999999999999999999854

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=7.1e-56  Score=443.17  Aligned_cols=253  Identities=18%  Similarity=0.251  Sum_probs=214.8

Q ss_pred             cCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeeccc-ccch--hhhhhHHhhhheeeecce
Q 022694           11 FKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFD-YVGG--AFYKNMVKVAKCVTYNKV   85 (293)
Q Consensus        11 ~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~-~~~~--~~~~~~~~l~r~~t~~~~   85 (293)
                      .|+.++|+||||||+|+++  .+++.++.+++++++.|+|||+||+|+.||.||+ +++|  .||..+..+++.+|+.++
T Consensus        63 ~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~  142 (682)
T PTZ00348         63 AGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARI  142 (682)
T ss_pred             CCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence            3889999999999999754  5889999999999999999999999999999997 6665  567767777777777666


Q ss_pred             eee---ccccC-CccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC-CCccccccc
Q 022694           86 VGI---FGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESS  160 (293)
Q Consensus        86 ~~~---~g~~~-~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~-~~p~~l~~~  160 (293)
                      ++.   .|+.+ +.++|+++||+||||        |||.+++|   +||||.||+||++|||++|++||. ++|.+++++
T Consensus       143 K~~~~~~g~~~~~i~~gll~YPvLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~  211 (682)
T PTZ00348        143 KKCCTIMGKTEGTLTAAQVLYPLMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHH  211 (682)
T ss_pred             HHHHHhhcccCCCCchHHHhhhHHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccc
Confidence            653   34433 479999999999999        89999997   699999999999999999999995 578888899


Q ss_pred             ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCe----eeeecceeeeeeec------
Q 022694          161 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLSFFLE------  230 (293)
Q Consensus       161 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p----~~~~~~~~l~~~~~------  230 (293)
                      +||||+|+++|||||+|+|+|+|+|+|++|++||++ ||||+..........+|+|    +.++++.|++++..      
T Consensus       212 ~LpGL~gg~~KMSKS~p~naI~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~  290 (682)
T PTZ00348        212 MLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAV  290 (682)
T ss_pred             cCcCCCCCCCcCCCCCCCCeecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchh
Confidence            999999766899999998899999999999999999 9999752111123456777    77888888877621      


Q ss_pred             ------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694          231 ------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  275 (293)
Q Consensus       231 ------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~  275 (293)
                            .++++++++++|.+|++||++||++|+++|+++|+|||+++++-.
T Consensus       291 ~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~  341 (682)
T PTZ00348        291 ATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP  341 (682)
T ss_pred             cccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence                  126789999999999999999999999999999999999998654

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=100.00  E-value=1.7e-52  Score=382.46  Aligned_cols=225  Identities=24%  Similarity=0.285  Sum_probs=200.9

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccC--CCceeEeecccccchhhhhhH
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNM   73 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~~~   73 (293)
                      +|||++ |+.++|+|||+||+++++         .+++++++|+++++++|+|+|+|  |+|+.||.||+|+++.+|..+
T Consensus        26 ~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k~~i~~~s~~~~~l~~~~~  104 (269)
T cd00805          26 RDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTLDF  104 (269)
T ss_pred             HHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcceEEEEchHhhccCCHHHH
Confidence            679995 999999999999999865         79999999999999999999997  999999999999988888888


Q ss_pred             Hhhhheeeecceeeeccc------cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCC
Q 022694           74 VKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP  147 (293)
Q Consensus        74 ~~l~r~~t~~~~~~~~g~------~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~  147 (293)
                      +++++.++++++.++.++      .++.++|+|+||+||||        ||+.++++   +||||.||++|++++||+|+
T Consensus       105 l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~~~---l~~~G~DQ~~~i~~~rd~a~  173 (269)
T cd00805         105 LRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLDVD---LQLGGSDQRGNITLGRDLIR  173 (269)
T ss_pred             HHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHhCC---eeEecHHHHHHHHHHHHHHH
Confidence            889999998888876533      34679999999999999        89999884   79999999999999999999


Q ss_pred             ccCCCCcccccccccccccCCccccccCCCCce-eeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeee
Q 022694          148 RIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS  226 (293)
Q Consensus       148 r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~-I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~  226 (293)
                      |||+.+|..+++|+||||+|  .|||||.+|+. |++.|+|++|++||++ |+|++               +++++.++.
T Consensus       174 r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~~---------------v~~~l~~~~  235 (269)
T cd00805         174 KLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDPD---------------VLEFLKLFT  235 (269)
T ss_pred             HhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcHH---------------HHHHHHHHH
Confidence            99999999999999999999  59999999866 7999999999999999 99961               233444444


Q ss_pred             eeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHH
Q 022694          227 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE  262 (293)
Q Consensus       227 ~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~  262 (293)
                      ++  +++++++++++|.+|.+ ++++|+.||+.|++
T Consensus       236 ~~--~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~  268 (269)
T cd00805         236 FL--DYEEIEELEEEHAEGPL-PRDAKKALAEELTK  268 (269)
T ss_pred             cC--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence            44  67899999999998877 99999999999986

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=5.9e-53  Score=389.79  Aligned_cols=245  Identities=30%  Similarity=0.458  Sum_probs=214.0

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccc--hhhcccCCCceeEeecccccch-hhh---h---hH
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGFDVTKTFIFSDFDYVGG-AFY---K---NM   73 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~--~lA~Gldp~k~~i~~qs~~~~~-~~~---~---~~   73 (293)
                      .|||+ .|+.++|+||||||+++++  .+++.++.++++++..  ++|+|+||+++.||.||+|+++ .++   .   ..
T Consensus        30 ~~lq~-~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~~~~~~~~~~~l~~~~~~  108 (292)
T PF00579_consen   30 IWLQK-AGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSDWPEHMELWWFLSDVARL  108 (292)
T ss_dssp             HHHHH-TTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHHHHCHHHHHHHHHHHHBH
T ss_pred             HHHHh-cCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCCcccccchhhhhcccccc
Confidence            68999 5999999999999999875  3799999999999999  9999999999999999999876 332   2   24


Q ss_pred             HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-
Q 022694           74 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-  152 (293)
Q Consensus        74 ~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-  152 (293)
                      .+|+|+.++++++++++.+++.++|+|+||+||||        |++.+++|   +||||.||++|+++||++|+|+|+. 
T Consensus       109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~---~~~~G~DQ~~~~~l~rd~a~k~~~~~  177 (292)
T PF00579_consen  109 FSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD---LVPGGIDQRGHIELARDLARKFNYKE  177 (292)
T ss_dssp             HHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS---EEEEEGGGHHHHHHHHHHHHHHTHHS
T ss_pred             cchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc---cccccchHHHHHHHHHHHHhhhcccc
Confidence            66888888888766665445789999999999999        89999996   7999999999999999999999997 


Q ss_pred             ---CcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee-cceeeeee
Q 022694          153 ---KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI-PVKYLSFF  228 (293)
Q Consensus       153 ---~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~-~~~~l~~~  228 (293)
                         +|.++++|++|||+|. +|||||++|++|+|+|++++|++||++ |+|++..  +.++..+++|.+++ ++.++..+
T Consensus       178 ~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~  253 (292)
T PF00579_consen  178 IFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFCDPDR--ENPRLLKGRPFISPFLIERLEAF  253 (292)
T ss_dssp             TSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHTSTTS--HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-HhhCCCc--ccccccccCCCCCHHHHHHHHHh
Confidence               9999999999999994 599999999999999999999999999 9999987  44566778888888 77777776


Q ss_pred             ecCh--HHHHHHHHhccCCCcccHHHHHHHHHHHHHHHH
Q 022694          229 LEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE  265 (293)
Q Consensus       229 ~~~~--~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~  265 (293)
                      ..+.  .+++++.++|.+|.+|++++|++++++++++|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le  292 (292)
T PF00579_consen  254 HGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE  292 (292)
T ss_dssp             HHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence            4322  368999999999999999999999999999985

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=100.00  E-value=1.3e-48  Score=357.27  Aligned_cols=228  Identities=18%  Similarity=0.194  Sum_probs=188.9

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc-c--------ChHHHHHHHHhcccchhhcccC--CCceeEeecccccch-hhhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGG-AFYKN   72 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~--------~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~-~~~~~   72 (293)
                      +|||+ +|+.++++|||+||+++++ .        +++++++|+++++++++|+|+|  |++++||.||+|++. .++..
T Consensus        25 ~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k~~i~~ns~~~~~~~~~~l  103 (273)
T cd00395          25 RRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQF  103 (273)
T ss_pred             HHHHH-CCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcceEEEEccccCCcccHHHH
Confidence            78999 5999999999999999864 2        8999999999999999999999  999999999999843 45555


Q ss_pred             HHhhhheeeecceeeecccc----CCccccccccCCcccCCCCCCCCCcccCCCCccce-eccccccCCcccccccccCC
Q 022694           73 MVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAP  147 (293)
Q Consensus        73 ~~~l~r~~t~~~~~~~~g~~----~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~-~vpvG~DQ~~~~~laRdia~  147 (293)
                      ...+++.++++++.++.++.    ++.++|+|+||+||||        ||+.++++..| +||||.||+||+++|||+|+
T Consensus       104 ~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~  175 (273)
T cd00395         104 LRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNTTEGCDIQPGGSDQWGNITLGRELAR  175 (273)
T ss_pred             HHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhcccCCcEEEecHHHHHHHHHHHHHHH
Confidence            55566666666666655442    3689999999999999        78888773444 89999999999999999999


Q ss_pred             ccC-CCCcccccccccccccCCccccccCCCCce--eeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694          148 RIG-YHKPALIESSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  224 (293)
Q Consensus       148 r~n-~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  224 (293)
                      ||| +++|..+++|+||||+|  .|||||++|+.  |+++|||++|++||++ |+                  .++++.|
T Consensus       176 r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~~i~l~~~~dsp~~i~~ki~~-a~------------------d~~v~~~  234 (273)
T cd00395         176 RFNGFTIAEGLTIPLVTKLDG--PKFGKSESGPKWLDTEKTSPYEFYQFWIN-AV------------------DSDVINI  234 (273)
T ss_pred             HhCCCCCCeEEeeccccCCCC--CcCCCCCCCCccccccCCCHHHHHHHHHc-cc------------------HhHHHHH
Confidence            997 57899999999999999  49999998743  4479999999999999 86                  1445677


Q ss_pred             eeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHH
Q 022694          225 LSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL  263 (293)
Q Consensus       225 l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~  263 (293)
                      +++|+. +.+++++|++++.+|. +++++|+.||+.|+++
T Consensus       235 ~~~~t~~~~~ei~~i~~~~~~~~-~~~~~K~~La~~i~~~  273 (273)
T cd00395         235 LKYFTFLSKEEIERLEQEQYEAP-GYRVAQKTLAEEVTKT  273 (273)
T ss_pred             HHHHcCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence            777653 5677888777776664 7799999999999863

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.7e-47  Score=337.29  Aligned_cols=248  Identities=21%  Similarity=0.231  Sum_probs=204.3

Q ss_pred             HhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchh-h---cccCCCceeEeecccccch-hhhhhHHhhhheee
Q 022694            8 QDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDII-A---CGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT   81 (293)
Q Consensus         8 Q~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~l-A---~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t   81 (293)
                      -+ +||.|.|++|||||+++|. .+++.+..++.++-..+. |   .+++.++.-+..-|++... .|..++.++++.+|
T Consensus        62 lk-AGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~  140 (360)
T KOG2144|consen   62 LK-AGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVT  140 (360)
T ss_pred             Hh-cCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhcc
Confidence            35 4999999999999999876 888888888865555333 3   3555566543344555433 55668999999999


Q ss_pred             ecceeeec--c--ccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccc
Q 022694           82 YNKVVGIF--G--FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI  157 (293)
Q Consensus        82 ~~~~~~~~--g--~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l  157 (293)
                      .++.+++.  +  ..++..++.++||.|||+        |++.+++|   ..++|.|||+.+.+||++++.+|+++|.++
T Consensus       141 ~hdak~agaevvkqve~plls~llYP~MQal--------De~~L~vD---~qfgGvDQRKIf~~A~eylp~l~ykKrihL  209 (360)
T KOG2144|consen  141 QHDAKKAGAEVVKQVENPLLSGLLYPGMQAL--------DEFYLEVD---AQFGGVDQRKIFVLAEEYLPDLGYKKRIHL  209 (360)
T ss_pred             HhHHHHhhhhHHHhhcchhhhhhhhhhHHHh--------hHHHHhhh---HHhcCccHHHHHHHHHHhhhhhCcccceee
Confidence            99888763  2  246678899999999999        67778887   479999999999999999999999999999


Q ss_pred             cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee----ecceeeeeeec---
Q 022694          158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFFLE---  230 (293)
Q Consensus       158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~~~---  230 (293)
                      ++||||||++ ++|||||+|+|.|+|.|+|++|.+||++ |||.|+..       .+|+..+    ++|+++..+..   
T Consensus       210 mnpMvPGL~q-~~KMSsSd~~SkIdllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~i  280 (360)
T KOG2144|consen  210 MNPMVPGLAQ-GEKMSSSDPLSKIDLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEVI  280 (360)
T ss_pred             cCCCCccccc-cCccccCCcccccccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCceee
Confidence            9999999996 4899999999999999999999999999 99998754       3787765    34555543220   


Q ss_pred             ----------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 022694          231 ----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD  276 (293)
Q Consensus       231 ----------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~  276 (293)
                                +++++|+++++|.+|.+||+|||+.|+.+|+++|+|||+.++...+
T Consensus       281 ~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~  336 (360)
T KOG2144|consen  281 DRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE  336 (360)
T ss_pred             cchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence                      3689999999999999999999999999999999999999887544

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=7.6e-45  Score=363.87  Aligned_cols=244  Identities=14%  Similarity=0.178  Sum_probs=209.8

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch--hhhhhHHhhhhe
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKC   79 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~   79 (293)
                      .+|+...||.++|++|||||+++++  +++++|++.++++++.|.|+|+|++ +.+...|+. ..+  .||..+.+++|.
T Consensus       400 ~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~  478 (682)
T PTZ00348        400 DFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARK  478 (682)
T ss_pred             HHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHh
Confidence            4577778999999999999999987  8999999999999999999999999 844444454 343  899999999999


Q ss_pred             eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      +|++++++++| .+..++|+++||+|||+        ||+.+++|   +..+|+|||+.++||||++++-+  +|.++++
T Consensus       479 ~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~d---i~~gG~DQRki~mlAre~~~~~~--~~~~~~~  544 (682)
T PTZ00348        479 NLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSAS---HVISTSLDGGINEFAREYTKGRI--ECIQALE  544 (682)
T ss_pred             ccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCC---eeecChhHHHHHHHHHHhccccc--cchhhcC
Confidence            99999999986 45568999999999999        89999998   57899999999999999999654  3455778


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee---ee-c-----
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF---FL-E-----  230 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~---~~-~-----  230 (293)
                      +++|||.+|..+|++|+++|+|++.|++++|++||++ |||+++.        .+||.++.+-.++..   |. .     
T Consensus       545 ~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~~y~~~~~~~~~i~R~e~~  615 (682)
T PTZ00348        545 GRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVAQHLLAQQGALSIERGEAN  615 (682)
T ss_pred             CCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHHHHHhcCCCeEEEeccccc
Confidence            9999999777899999888999999999999999999 9998842        368887643222111   21 1     


Q ss_pred             ----ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 022694          231 ----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  272 (293)
Q Consensus       231 ----~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~  272 (293)
                          .+.++++++++|.+|.+||+|||.+++++|+++|+|+|++++
T Consensus       616 Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~  661 (682)
T PTZ00348        616 GGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS  661 (682)
T ss_pred             CCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                357899999999999999999999999999999999999997

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=1.3e-44  Score=347.29  Aligned_cols=235  Identities=22%  Similarity=0.217  Sum_probs=193.9

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCc--eeEeecccccchhhhhhH
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNM   73 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k--~~i~~qs~~~~~~~~~~~   73 (293)
                      +|||+ .|+.++++||||||+++++         .+.+++++|+..+ ...+|+|+||++  ++||.||+|+++..+..+
T Consensus        59 ~~lQ~-~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~  136 (408)
T PRK05912         59 RRFQD-AGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDF  136 (408)
T ss_pred             HHHHH-CCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHHHHhcCcCcCcEEEEECCCcCCcccHHHH
Confidence            77999 5999999999999999753         4788899999765 556699999999  999999999987555555


Q ss_pred             Hh-hhheeeecceeee------ccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCcccccc
Q 022694           74 VK-VAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMT  142 (293)
Q Consensus        74 ~~-l~r~~t~~~~~~~------~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~la  142 (293)
                      ++ +++.++++++.++      ++..++.++|+|+||+||||        |++.+    +++   ++|||.||++|++++
T Consensus       137 l~~v~~~~~v~~m~~~~~~k~r~~~~~~is~~ef~Yp~LQa~--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~g  205 (408)
T PRK05912        137 LRDLGKHFTVNRMLERDDFKKRLREGQGISFTEFLYPLLQGY--------DFVALNKRYGCD---LQLGGSDQWGNILSG  205 (408)
T ss_pred             HHHHhhhccHHHHhhcchHHHHhccCCCCchhhhhhHHHHHh--------hHHHHhccCCCC---EEeccHHHHHHHHHH
Confidence            55 6667776666543      22235689999999999999        78888    885   689999999999999


Q ss_pred             cccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee
Q 022694          143 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVD  219 (293)
Q Consensus       143 Rdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~  219 (293)
                      ||+|+|||..++..++.|+|||++|  +|||||. +++|+|+|   ||+++++||++ + +              +++++
T Consensus       206 rdla~r~~~~~~~~l~~plL~~~~G--~KMsKS~-~naI~L~d~~tsp~~i~qki~~-~-~--------------D~~v~  266 (408)
T PRK05912        206 RDLQRRYGGKPQFGLTMPLLTGLDG--KKMGKSE-GNAVWLDEEKTSPYEMYQKWMN-I-S--------------DADVW  266 (408)
T ss_pred             HHHHHHhCCCCeEEEecCCcCCCCC--CcccCCC-CCceeCCCCCCCHHHHHHHHhc-C-C--------------hHHHH
Confidence            9999999987778888999999998  7999998 46999999   99999999999 5 1              22334


Q ss_pred             ecceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694          220 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  274 (293)
Q Consensus       220 ~~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~  274 (293)
                      .++.++.++  +.+++++++++|++|. +++++|+.||+.|++++++..+..+..
T Consensus       267 ~~l~~~t~~--~~~ei~~l~~~~~~g~-~~~~~Kk~LA~~v~~~lhg~~~~~~a~  318 (408)
T PRK05912        267 RYLKLLTFL--SLEEIEELEEELAEGP-NPREAKKVLAEEITALVHGEEAAEAAE  318 (408)
T ss_pred             HHHHHHhcC--CHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            334444433  6788999999998887 999999999999999999977665543

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.1e-43  Score=340.61  Aligned_cols=237  Identities=19%  Similarity=0.188  Sum_probs=198.6

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhh
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN   72 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~   72 (293)
                      ++ +|||+ +|+.++|+|||+||+++++         .+.+++++|+..+.+++.+ |+||++++|+.||+|.++..+..
T Consensus        57 ~l-~~lq~-~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~  133 (410)
T PRK13354         57 KL-KRFQD-AGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLID  133 (410)
T ss_pred             HH-HHHHH-cCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHH
Confidence            35 78999 5999999999999999753         5788999999988888877 99999999999999998644454


Q ss_pred             HH-hhhheeeecceee------eccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccc
Q 022694           73 MV-KVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM  141 (293)
Q Consensus        73 ~~-~l~r~~t~~~~~~------~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~l  141 (293)
                      ++ .+++++|++++.+      +++..++.++|+|+||+||||        |++.+    +++   ++|||.||++|+++
T Consensus       134 ~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~--------D~~~l~~~~~~~---iq~gG~DQ~~ni~~  202 (410)
T PRK13354        134 FLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAY--------DFVHLNRKEDVD---LQIGGTDQWGNILM  202 (410)
T ss_pred             HHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhh--------hHHHHhccCCCC---EEEecHHHHHHHHH
Confidence            44 4666666655543      333234678899999999999        78888    775   68999999999999


Q ss_pred             ccccCCccCCCCcccccccccccccCCccccccCCCCceeeeccC---hHHHHHHhhhcccCCCchhHHHHHHcCCCeee
Q 022694          142 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEV  218 (293)
Q Consensus       142 aRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~---~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~  218 (293)
                      +||+++|+|..+|..++.|+|+|++|  .|||||.+| +|+|+|+   |+++++||++ + +|                 
T Consensus       203 grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~~n-aI~L~d~~tsp~~i~qki~~-~-~D-----------------  260 (410)
T PRK13354        203 GRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSAGG-AIWLDPEKTSPYEFYQFWMN-I-DD-----------------  260 (410)
T ss_pred             HHHHHHHhCCCCceEeccCCccCCCC--CccCCCCCC-ceeccCCCCCHHHHHHHHHc-C-Ch-----------------
Confidence            99999999998899999999999999  499999875 9999999   9999999999 5 11                 


Q ss_pred             eecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694          219 DIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  275 (293)
Q Consensus       219 ~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~  275 (293)
                      +.++.|+++|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus       261 ~~v~~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~~Kk~LA~~v~~~vhg~~~~~~a~~  317 (410)
T PRK13354        261 RDVVKYLKLFTDLSPDEIDELEAQLETEP-NPRDAKKVLAEEITKFVHGEEAAEEAEK  317 (410)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            233678888764 6789999999999875 5999999999999999999888766543

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=100.00  E-value=2.5e-36  Score=287.29  Aligned_cols=216  Identities=22%  Similarity=0.176  Sum_probs=181.6

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHH
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMV   74 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~   74 (293)
                      +|||+ .|+.++|+|||+||+++++         .+.+++++|+ +.++.++|+|+||+++.|+.||+|... .|+..+.
T Consensus        56 ~~lq~-~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~  133 (377)
T TIGR00234        56 RDFQQ-AGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIR  133 (377)
T ss_pred             HHHHH-CCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHH
Confidence            77999 4999999999999999864         4566777777 678889999999999999999999864 5777777


Q ss_pred             hhhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC
Q 022694           75 KVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG  150 (293)
Q Consensus        75 ~l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n  150 (293)
                      ++++.+|++++.++.++    .++.++++|+||+|||+        |++.+++|   ++|||.||++|++.+|++|++++
T Consensus       134 ~~~~~~tv~~m~~~~~~~~R~~~~is~~ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~  202 (377)
T TIGR00234       134 DLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNL  202 (377)
T ss_pred             HHhCceEHHHHHcccHHHHHHhcCCCchhhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhc
Confidence            89999999999887654    24689999999999999        89999997   69999999999999999999999


Q ss_pred             CCCcccccccccccccCCccccccCCC----------CceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694          151 YHKPALIESSFFPALQGETGKMSASDP----------NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  220 (293)
Q Consensus       151 ~~~p~~l~~~~lpgL~g~~~KMSkS~~----------~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~  220 (293)
                      ...+..+..|++++++|  .|||||.+          +++|++.|+|+++.+||++ |||+..                 
T Consensus       203 ~~~~~~~t~pLl~~~dg--~KmgKS~~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~-----------------  262 (377)
T TIGR00234       203 PSLGFGLTVPLLTPADG--EKMGKSGGGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLG-----------------  262 (377)
T ss_pred             CCCceeeceeeecCCCC--CCccCCCCCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCc-----------------
Confidence            77777788899999997  69999953          3678888889999999999 999643                 


Q ss_pred             cceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHH
Q 022694          221 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH  267 (293)
Q Consensus       221 ~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pi  267 (293)
                                 .+++++|.+  . ..-++.+.|+.+|..|+..++.-
T Consensus       263 -----------~~ei~~l~~--~-~~~~~~~~q~~la~ei~~~vhg~  295 (377)
T TIGR00234       263 -----------LEEIEALVE--L-KGPSPREVKENLAKEITKYVHGE  295 (377)
T ss_pred             -----------HHHHHHHHH--h-cccCHHHHHHHHHHHHHHHhcCH
Confidence                       235666654  2 22578999999999998888753

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.1e-31  Score=253.05  Aligned_cols=245  Identities=22%  Similarity=0.229  Sum_probs=187.4

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHH----hcccchh-hcccCCC-ceeEeecccccch-hhhhhHHhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGG-AFYKNMVKV   76 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~----~~~~~~l-A~Gldp~-k~~i~~qs~~~~~-~~~~~~~~l   76 (293)
                      ++||++ ||.++++|||+||+++++ ...+..+..++    ++++.+. ++|.+++ ++.+..+|+|... .|+..+.++
T Consensus        58 ~~fQ~a-Gh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~  136 (401)
T COG0162          58 RRFQDA-GHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDV  136 (401)
T ss_pred             HHHHHC-CCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHH
Confidence            789995 999999999999999987 77777776665    4444333 6687777 8988899999864 788888888


Q ss_pred             hheeeecceeeeccc------cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC
Q 022694           77 AKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG  150 (293)
Q Consensus        77 ~r~~t~~~~~~~~g~------~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n  150 (293)
                      ++++|++++.++..+      ..++++.+|+||+|||+        |++.++.|   +..||.|||.++.++||+++|+|
T Consensus       137 g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr~g  205 (401)
T COG0162         137 GKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRRLG  205 (401)
T ss_pred             HhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHHhC
Confidence            899999999887432      23589999999999999        88989987   58999999999999999999999


Q ss_pred             CCCcccccccccccccCCccccccCCCCceeeec-cC--hHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694          151 YHKPALIESSFFPALQGETGKMSASDPNSAIYVT-DS--AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  227 (293)
Q Consensus       151 ~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~-D~--~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~  227 (293)
                      +++|.++++|+|+|++|  +|||||..+ ++++. +.  |-+++.++++ .  +    .            ..+..|+..
T Consensus       206 ~~~~~~lt~PLL~~ldG--~KmgKs~~~-a~~~~s~~~Sp~~~yq~~~~-i--~----D------------~~~~~~~~~  263 (401)
T COG0162         206 QKKVVGLTTPLLTGLDG--KKMGKSEGG-AVWLDSEKTSPYDFYQYWMN-I--E----D------------ADVKRFLKL  263 (401)
T ss_pred             CCCeEEEEeccccCCCC--CcccccCCC-ceEccCCCCCcHhhhhcHhc-C--c----H------------HHHHHHHHH
Confidence            99999999999999999  389988765 33332 22  5555555555 1  0    0            111233333


Q ss_pred             eec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccc
Q 022694          228 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  286 (293)
Q Consensus       228 ~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~  286 (293)
                      ++. ..+++++|.+....+. ++.++|+.||..++...++-...++....  .++.+..+
T Consensus       264 ~t~l~~~eI~~i~~~~~~~~-~~r~~k~~LA~e~~~~~hG~~~a~~a~~~--~~~~F~~g  320 (401)
T COG0162         264 LTFLSLEEIEEIEKYVLKGP-EPREAKKLLAKEVTKLVHGEEAAEAAEEE--FEKLFSEG  320 (401)
T ss_pred             hCcCChHHHHHHHHHhhcCC-ChHHHHHHHHHHhhHhhcCHHHHHHHHHH--HHHHHhcC
Confidence            322 2368899998777675 88899999999999999887666555433  55555554

>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.3e-13  Score=124.47  Aligned_cols=229  Identities=15%  Similarity=0.126  Sum_probs=157.2

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccch----------hhcccCCCceeEeeccccc
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDI----------IACGFDVTKTFIFSDFDYV   65 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~----------lA~Gldp~k~~i~~qs~~~   65 (293)
                      -|+|.+ |+.++-+|++.+|-++++         ...+.+++|++.+..++          .-+|..-.+-+|+.+++|-
T Consensus        89 ~hfqr~-Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~  167 (467)
T KOG2623|consen   89 IHFQRA-GHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWY  167 (467)
T ss_pred             HHHHHc-CCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHh
Confidence            478995 999999999999999864         22233555554332222          2234433456888998886


Q ss_pred             ch----hhhhhH---HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccC-CC-CccceeccccccCC
Q 022694           66 GG----AFYKNM---VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GK-DHLRCLIPCAIDQD  136 (293)
Q Consensus        66 ~~----~~~~~~---~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~-~~-ad~~~~vpvG~DQ~  136 (293)
                      +.    .|+..+   .++..|.....++.+...+++.+..+|+|-+|||+|        .+. ++ -.+ |+..+|.||+
T Consensus       168 ~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAYD--------fy~L~~~~g~-~~QlGGsDQw  238 (467)
T KOG2623|consen  168 KDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAYD--------FYHLYENYGC-RFQLGGSDQW  238 (467)
T ss_pred             hhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHh--------HHHHHHhcCe-eEEecccccc
Confidence            53    455444   556666666667766655677889999999999994        442 22 222 5679999999


Q ss_pred             cccccccccCCccCC--CCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHH
Q 022694          137 PYFRMTRDVAPRIGY--HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRK  211 (293)
Q Consensus       137 ~~~~laRdia~r~n~--~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~  211 (293)
                      .|+..+-|+.+|+-.  ..+..++.|+|.+-+|  .|..||.+| +|||+-   ||-.+++-.-+ +--   +.      
T Consensus       239 GNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG--~KlGKSaGn-AvWLdp~~tspy~lYQfF~~-~pD---d~------  305 (467)
T KOG2623|consen  239 GNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTG--AKLGKSAGN-AVWLDPSKTSPYHLYQFFAS-LPD---DD------  305 (467)
T ss_pred             cccchHHHHHHHhcccccceeeeeeeeEecCcc--hhhccCCCc-eEEecCccCCcHHHHHHHHh-Cch---hH------
Confidence            999999999988764  3456677899999998  699999987 999974   78888887777 311   11      


Q ss_pred             cCCCeeeeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHH
Q 022694          212 LGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER  266 (293)
Q Consensus       212 ~~~~p~~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~p  266 (293)
                            ++   .+++.|+. +-+++++|.+.-.+. -...-.-+.||+.|..++++
T Consensus       306 ------v~---k~LklfTfl~l~eI~~I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG  351 (467)
T KOG2623|consen  306 ------VE---KFLKLFTFLPLEEIKQILEEHRKE-PSQRIAQKLLAAEVTRMVHG  351 (467)
T ss_pred             ------HH---HHHHHHhcCCHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHcc
Confidence                  11   34444432 456777766655532 34455677888888888865

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=98.85  E-value=1.5e-09  Score=97.62  Aligned_cols=149  Identities=11%  Similarity=0.048  Sum_probs=106.8

Q ss_pred             cCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCcee-------EeecccccchhhhhhHHhhhheeeec
Q 022694           11 FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGGAFYKNMVKVAKCVTYN   83 (293)
Q Consensus        11 ~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~~~~~~~~~l~r~~t~~   83 (293)
                      +|..+++-|.|    |+   ......++...+.+++..+|+++++..       +|.||+-. ..|..-+-+|...    
T Consensus        32 ~~G~~ilRieD----td---~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~-~~y~~~~~~L~~~----   99 (239)
T cd00808          32 HGGKFILRIED----TD---QERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERL-EIYRKYAEKLLEK----   99 (239)
T ss_pred             cCCeEEEEECc----CC---CCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCH-HHHHHHHHHHHHc----
Confidence            57777777888    43   223344556666777778899999854       78898743 2333333333211    


Q ss_pred             ceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccc
Q 022694           84 KVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP  163 (293)
Q Consensus        84 ~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lp  163 (293)
                            |      -|..+|++.+++|        ....+.   |+|+.|.|+..+...-+.+++.||.+.|...+.|+++
T Consensus       100 ------g------dg~ptY~~a~~vD--------D~~~~i---thViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~  156 (239)
T cd00808         100 ------G------DGFPTYHLANVVD--------DHLMGI---THVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL  156 (239)
T ss_pred             ------C------CCCcccccHHHHh--------HHhcCC---CEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence                  1      2788999999994        555666   5899999999999999999999999999888899999


Q ss_pred             cccCCccccccCCCCceeeec----cChHHHHHHhhh
Q 022694          164 ALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK  196 (293)
Q Consensus       164 gL~g~~~KMSkS~~~s~I~L~----D~~~~i~~KI~k  196 (293)
                      +.+|  .||||+..+.+|.-.    -+|+.|..-+..
T Consensus       157 ~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~  191 (239)
T cd00808         157 NPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL  191 (239)
T ss_pred             CCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence            9998  699999876333222    256666665554

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=98.63  E-value=1.3e-09  Score=90.32  Aligned_cols=65  Identities=17%  Similarity=0.072  Sum_probs=55.3

Q ss_pred             cCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-CcccccccccccccCCccccccCC
Q 022694          102 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD  176 (293)
Q Consensus       102 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-~p~~l~~~~lpgL~g~~~KMSkS~  176 (293)
                      ||++|+|        |++.+.....+++++|.||.+|++..++++++++.+ +|.+++.++|++.+|  +|||||.
T Consensus        78 y~~~~~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~  143 (143)
T cd00802          78 YMFLQAA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK  143 (143)
T ss_pred             HHHHHHH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence            9999999        666666533457999999999999999999999764 688889999999886  6999984

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=97.91  E-value=1.2e-05  Score=72.09  Aligned_cols=149  Identities=12%  Similarity=0.121  Sum_probs=98.7

Q ss_pred             hhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheeeecceeee
Q 022694            9 DAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI   88 (293)
Q Consensus         9 ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~~~~~~~   88 (293)
                      ..+|..+++-|=|    |+   ......+....+..++..+|++.++- ++.||+-. ..|...+-+|...=        
T Consensus        30 r~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~-~~y~~~~~~L~~~g--------   92 (230)
T cd00418          30 RKYGGKFILRIED----TD---PERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRF-DLYRAYAEELIKKG--------   92 (230)
T ss_pred             HHcCCeEEEEeCc----CC---CCCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCH-HHHHHHHHHHHHcC--------
Confidence            4468888887777    32   12233455666777777889999864 56787754 23333333333110        


Q ss_pred             ccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCC
Q 022694           89 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGE  168 (293)
Q Consensus        89 ~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~  168 (293)
                               |   ||..+-|-    .++|.+. +.   |+|..|.|+..+-..-+.+++.||.++|...+.|+|.+.+| 
T Consensus        93 ---------g---~p~Y~la~----vvDD~~~-gI---ThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g-  151 (230)
T cd00418          93 ---------G---YPLYNFVH----PVDDALM-GI---THVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDG-  151 (230)
T ss_pred             ---------C---Cccccccc----ccccccc-CC---CEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCC-
Confidence                     3   44444332    2237654 33   68999999999999999999999999999999999999887 


Q ss_pred             ccccccCCCCceeeec----cChHHHHHHhhh
Q 022694          169 TGKMSASDPNSAIYVT----DSAKAIKNKINK  196 (293)
Q Consensus       169 ~~KMSkS~~~s~I~L~----D~~~~i~~KI~k  196 (293)
                       +|||||..+.+|.-.    -+|+.|..-+..
T Consensus       152 -~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~  182 (230)
T cd00418         152 -TKLSKRKLNTTLRALRRRGYLPEALRNYLAL  182 (230)
T ss_pred             -CCccCcCCCcCHHHHHHCCCcHHHHHHHHHH
Confidence             799999875333221    345556555544

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=97.55  E-value=3.6e-05  Score=76.68  Aligned_cols=55  Identities=24%  Similarity=0.374  Sum_probs=47.6

Q ss_pred             eccccccCCc-ccccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~-~~~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +.|.|.||.. +...++.+++ .||.+.|..+...++..-+|  +|||||.+| .|.+.|
T Consensus       237 ~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d  293 (510)
T PRK00750        237 FEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED  293 (510)
T ss_pred             EEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence            6899999999 9999999999 99998898887787776555  799999986 787765

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=96.81  E-value=0.00024  Score=67.59  Aligned_cols=55  Identities=29%  Similarity=0.461  Sum_probs=44.9

Q ss_pred             eccccccCCcc---cccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPY---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~---~~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      ..|+|.||..+   +..++.+++ .||.+.|..+...++ .+.|. .|||||.+| .|.+.|
T Consensus       230 ~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V-~l~gg-~KMSKSkGn-vI~~~d  288 (353)
T cd00674         230 FEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFI-GLKGG-GKMSSSKGN-VITPSD  288 (353)
T ss_pred             EEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeE-EeCCC-CccCCCCCC-cCCHHH
Confidence            57999999999   999999999 999988877666655 35552 599999986 777765

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=93.50  E-value=0.056  Score=53.61  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=52.5

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  196 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k  196 (293)
                      |+|..|.||..|.-.-..+.+.||.+.|...|.|++.+++|  +||||.++  .+.+.+      .|+.+..-+.+
T Consensus       209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~~  280 (476)
T PRK01406        209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLAL  280 (476)
T ss_pred             CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999998888899999998898888899989987  79999975  454433      55555555544

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=92.76  E-value=0.028  Score=60.06  Aligned_cols=56  Identities=25%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             CCCCccceeccccccCC---cccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceee
Q 022694          120 SGKDHLRCLIPCAIDQD---PYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY  182 (293)
Q Consensus       120 ~~~ad~~~~vpvG~DQ~---~~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~  182 (293)
                      .+.+|   +...|.||.   .|-.+-..++- +|.+++ .++.+.++...+|  .|||||.+| .|.
T Consensus       543 ~~P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vId  602 (912)
T PRK05743        543 GYPAD---LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VID  602 (912)
T ss_pred             CCCce---EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCC
Confidence            34565   568999997   33444444443 555545 3445788888887  799999987 554

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=92.58  E-value=0.18  Score=45.44  Aligned_cols=141  Identities=15%  Similarity=0.132  Sum_probs=82.7

Q ss_pred             HhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhh-eeeeccee
Q 022694            8 QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAK-CVTYNKVV   86 (293)
Q Consensus         8 Q~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r-~~t~~~~~   86 (293)
                      ...+|..+++=|=|    |+   ......+....+..++..+|++++.  ++.||+-.+ .|..-+-+|-. -..|... 
T Consensus        29 Ar~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wD~--~~~QS~r~~-~Y~~~~~~L~~~g~aY~~~-   97 (238)
T cd00807          29 AKKYGGRCNLRFDD----TN---PEKEEEEYVDSIKEDVKWLGIKPYK--VTYASDYFD-QLYEYAEQLIKKGKAYVHH-   97 (238)
T ss_pred             HHHhCCEEEEEecC----CC---CcccchHHHHHHHHHHHHcCCCCCC--ceecccCHH-HHHHHHHHHHHcCCeecCC-
Confidence            34467777777666    32   2223445566777788889999984  677887542 23222222211 1111100 


Q ss_pred             eeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccccccccc
Q 022694           87 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ  166 (293)
Q Consensus        87 ~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~  166 (293)
                       +   ..   -...+||..+-|-    -++|.+..   | |+|.-|.|....-..=.-+.+.||.+.|..+.-..+ +.+
T Consensus        98 -~---~~---~~~~i~ptY~lA~----vVDD~~~g---I-ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hl-n~~  161 (238)
T cd00807          98 -R---TG---DKWCIYPTYDFAH----PIVDSIEG---I-THSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRL-NLT  161 (238)
T ss_pred             -C---CC---CCEEEEeccccce----EeeccccC---C-CeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEE-CCC
Confidence             0   00   1233467777652    23376543   3 689999998877666666778899988865432233 666


Q ss_pred             CCccccccCCC
Q 022694          167 GETGKMSASDP  177 (293)
Q Consensus       167 g~~~KMSkS~~  177 (293)
                      |  .|+||+..
T Consensus       162 g--~kLSKR~~  170 (238)
T cd00807         162 Y--TVMSKRKL  170 (238)
T ss_pred             C--CCccCcCc
Confidence            6  79999974

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=92.30  E-value=0.026  Score=52.68  Aligned_cols=55  Identities=22%  Similarity=0.106  Sum_probs=34.8

Q ss_pred             eccccccCC-cccccccccCCccCCC-Cc-ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQD-PYFRMTRDVAPRIGYH-KP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~-~~~~laRdia~r~n~~-~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +..+|.||. +|+..-.-....++.. .| .++.+.++---.|  +|||||.+| .|.+.|
T Consensus       229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~KmSKS~gn-~v~~~d  286 (312)
T cd00668         229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGG--QKMSKSKGN-VIDPSD  286 (312)
T ss_pred             EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCC--ccccccCCC-cCCHHH
Confidence            568999999 7766555444444433 33 3344566653333  799999987 777643

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=92.17  E-value=0.031  Score=55.78  Aligned_cols=59  Identities=20%  Similarity=0.306  Sum_probs=42.1

Q ss_pred             eccccccCCcccccccccCCccCCCCcc---ccc--ccccccccCCccccccCCCCceeeeccChHH
Q 022694          128 LIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA  189 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r~n~~~p~---~l~--~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~  189 (293)
                      +-.+|.||..|+.-...+++.+|+.++.   .+|  ..++-+=+|  +|||||.+| .|.+.|==++
T Consensus       276 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g--~KMSkR~Gn-~i~l~dll~~  339 (507)
T PRK01611        276 IYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEG--VKMSTRAGN-VVTLDDLLDE  339 (507)
T ss_pred             EEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCC--CcccCCCCc-eeEHHHHHHH
Confidence            3479999999999999999999986442   233  234444344  799999987 8887653333

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=91.69  E-value=0.3  Score=44.08  Aligned_cols=143  Identities=14%  Similarity=0.137  Sum_probs=87.2

Q ss_pred             HhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhh-heeeeccee
Q 022694            8 QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVA-KCVTYNKVV   86 (293)
Q Consensus         8 Q~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~-r~~t~~~~~   86 (293)
                      -..+|..+++=|-|.    +.+. ..........+.+++..+|++++.  ++.||+-.+ .|...+-+|- +-.-|.  .
T Consensus        29 Ar~~~G~~ilRieDt----D~~r-~~~~~~~~~~i~~dL~wLGl~~d~--~~~qS~r~~-~y~~~~~~Li~~G~aY~--~   98 (240)
T cd09287          29 AKMYGGKFILRFDDT----DPRT-KRPDPEAYDMIPEDLEWLGVKWDE--VVIASDRIE-LYYEYARKLIEMGGAYV--H   98 (240)
T ss_pred             HHHcCCEEEEeeCcC----CCCc-ccchHHHHHHHHHHHHHcCCCCCC--ccchhccHH-HHHHHHHHHHHcCCccc--C
Confidence            344788888887883    3222 012333344577788889999984  678887642 2322222221 111111  0


Q ss_pred             eeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccccccccc
Q 022694           87 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ  166 (293)
Q Consensus        87 ~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~  166 (293)
                      ...   ++   ..++||..+-|-    .++|.+.. .   |+|.-|.|-..+-..=.-+.+.||.+.|...+.|+|.. .
T Consensus        99 ~~~---~~---~~~i~ptY~la~----vVDD~~~g-I---ThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~-~  163 (240)
T cd09287          99 PRT---GS---KYRVWPTLNFAV----AVDDHLLG-V---THVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKI-E  163 (240)
T ss_pred             ccc---CC---cEEEEEccccce----eeeccccC-C---CeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecC-C
Confidence            110   11   124567777663    23366543 3   68999999888877777788889999999889898863 4


Q ss_pred             CCccccccCCC
Q 022694          167 GETGKMSASDP  177 (293)
Q Consensus       167 g~~~KMSkS~~  177 (293)
                      |  .||||.+.
T Consensus       164 ~--~kLSKR~~  172 (240)
T cd09287         164 G--GKLSTSKI  172 (240)
T ss_pred             C--Ceeccccc
Confidence            5  79999963

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=91.30  E-value=0.046  Score=52.62  Aligned_cols=53  Identities=19%  Similarity=0.127  Sum_probs=33.3

Q ss_pred             eccccccCCcccccccccCC--ccCCCCc--ccccccccccccCCccccccCCCCceeeec
Q 022694          128 LIPCAIDQDPYFRMTRDVAP--RIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~--r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +..+|.||...+-.. .++.  .+....|  .++.+.++.+++|  +|||||.+| .|.+.
T Consensus       299 ~~~~G~D~~~~h~~~-~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~  355 (382)
T cd00817         299 LLVTGHDIIFFWVAR-MIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPL  355 (382)
T ss_pred             eeeeecCcCchHHHH-HHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHH
Confidence            468999997654332 2221  1212234  4445778877777  799999987 77664

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=90.70  E-value=0.066  Score=53.58  Aligned_cols=56  Identities=27%  Similarity=0.399  Sum_probs=34.7

Q ss_pred             eccccccCCccc---ccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYF---RMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~---~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      ..|.|.|+...-   ....++|+ -||...|..+.--+ ..|+|.+.|||||.+| .|.+.|
T Consensus       228 ~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~-v~L~~~g~KMSKS~Gn-~itl~d  287 (515)
T TIGR00467       228 FEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEW-ISLKGKGGKMSSSKGD-VISVKD  287 (515)
T ss_pred             cccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEE-EEEcCCCccccCCCCC-CccHHH
Confidence            579999987633   44555554 56665665433222 2255655799999986 666544

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=90.12  E-value=0.064  Score=53.47  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=55.4

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceee-ec---cChHHHHHHhhhcccC
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINKYAFS  200 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~i~~KI~k~A~t  200 (293)
                      ++|..|.||..|.---..+.+.||...|...|.|+|.+++|  +||||..+...|. +.   =.|+.|..-+.....+
T Consensus       198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s  273 (513)
T PRK14895        198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWS  273 (513)
T ss_pred             CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhHHHHHHCCCCHHHHHHHHHHhCCC
Confidence            57889999999988888888999998899999999999998  7999997643221 11   1677777777653333

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=89.68  E-value=0.094  Score=51.82  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=34.8

Q ss_pred             cccCCCCccceeccccccCC-cccccccccCC---ccCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694          117 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAP---RIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       117 Dil~~~ad~~~~vpvG~DQ~-~~~~laRdia~---r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      .+|...-|   +-++|.|.. +|+  .+++|.   -+|.|-+-. +|+.+| .++|  +|||||.+| .|.+.|
T Consensus       215 ~~lg~~~D---ih~gG~DlifpHh--~neiaqs~a~~g~p~~~~w~H~g~v-~~~G--~KMSKS~GN-~i~~~d  279 (463)
T PRK00260        215 KYLGETFD---IHGGGADLIFPHH--ENEIAQSEAATGKPFANYWMHNGFV-TVNG--EKMSKSLGN-FFTIRD  279 (463)
T ss_pred             HhcCCCcc---eecCccccCCCch--HhHHHHHHHhcCCCcceEEEEccEE-ccCC--CcccCcCCC-CCCHHH
Confidence            34444344   358999954 454  445555   245222223 344444 4777  799999987 666644

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=89.61  E-value=0.068  Score=50.02  Aligned_cols=54  Identities=22%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             eccccccCCccc----ccccccCCccCC---CCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~----~laRdia~r~n~---~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +-.+|.||.+++    .+-..++...|+   +.|.. +.+.+|- ++|  +|||||.+| .|.+.|
T Consensus       227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d  288 (314)
T cd00812         227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE  288 (314)
T ss_pred             eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence            457899996633    233344444443   34433 3455554 566  799999987 777743

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=89.36  E-value=0.15  Score=46.87  Aligned_cols=85  Identities=12%  Similarity=0.058  Sum_probs=57.2

Q ss_pred             cCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCcee
Q 022694          102 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI  181 (293)
Q Consensus       102 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I  181 (293)
                      ||..+-|.    .++|.+.. .   |+|.-|.|....--.=.-+.+.||.++|...|.|+|.+.+|  .|+||++....|
T Consensus       170 ~ptY~fA~----vVDD~~~g-I---ThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKR~~~~~i  239 (272)
T TIGR03838       170 LFAYQLAV----VVDDAAQG-I---THVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADG--EKLSKQNGAPAL  239 (272)
T ss_pred             CccccChh----hhhcccCC-C---CEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCC--CeeeccCCccch
Confidence            45555442    23365542 2   68889999877666666677888999999899999999998  799999864444


Q ss_pred             eeccChHHHHHHhhh
Q 022694          182 YVTDSAKAIKNKINK  196 (293)
Q Consensus       182 ~L~D~~~~i~~KI~k  196 (293)
                      .=.+.++.+..-+.+
T Consensus       240 ~~~~~~~~~~~~l~~  254 (272)
T TIGR03838       240 DLSHPLPALLAALRF  254 (272)
T ss_pred             hcCCcHHHHHHHHHH
Confidence            333444444444433

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=89.29  E-value=0.09  Score=55.89  Aligned_cols=54  Identities=26%  Similarity=0.205  Sum_probs=33.3

Q ss_pred             eccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||..   |..+-..++- ++.++| .++.+.++...+|  +|||||.+| .|...|
T Consensus       567 ~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~d  624 (861)
T TIGR00392       567 FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPLK  624 (861)
T ss_pred             EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHHH
Confidence            5789999966   2222222221 354444 3445777776676  799999987 676543

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=89.18  E-value=0.077  Score=50.23  Aligned_cols=53  Identities=26%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             eccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694          128 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       128 ~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +.+.|.||..   |..+-.-++ -.+...| .++.+.++...+|  +|||||.+| .|.+.
T Consensus       255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~  311 (338)
T cd00818         255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQ  311 (338)
T ss_pred             EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHH
Confidence            4577999974   333333332 2333333 3445777766677  799999987 77764

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=88.70  E-value=0.13  Score=51.09  Aligned_cols=52  Identities=27%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             eccccccCCccccc---ccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFRM---TRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~l---aRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||..++-.   +.-.+-  +.+.| .++++.++- ++|  +|||||.+| .|.+.|
T Consensus       257 ~~~~G~D~~~~h~~~~~a~~~a~--~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d  312 (511)
T PRK11893        257 VHLIGKDILRFHAVYWPAFLMAA--GLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD  312 (511)
T ss_pred             ceEecccccccchhHHHHHHHhC--CCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence            36789999885322   332322  44556 444567765 576  799999987 887754

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=88.46  E-value=0.13  Score=55.44  Aligned_cols=57  Identities=21%  Similarity=0.113  Sum_probs=34.4

Q ss_pred             CCCCccceeccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeee
Q 022694          120 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  183 (293)
Q Consensus       120 ~~~ad~~~~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  183 (293)
                      .+.+|   +...|.||..   |-.+..-++ -.|.+++ .++.|.++...+|  +|||||.+| .|..
T Consensus       581 ~~PaD---~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP  641 (961)
T PRK13804        581 KWPAD---LYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSP  641 (961)
T ss_pred             CCCce---EEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCH
Confidence            45665   5689999975   111111111 0122233 4556888888787  799999987 6644

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=87.98  E-value=0.15  Score=50.48  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  196 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k  196 (293)
                      ++|..|.||..|...-..+.+.+|.+.|...|.|++.+++|  +||||..+  .+.|.+      .|+.+..-+.+
T Consensus       199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~  270 (470)
T TIGR00464       199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL  270 (470)
T ss_pred             CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999998888999999998898888899889888  79999975  444433      56666665554

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=87.61  E-value=0.3  Score=51.15  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=20.7

Q ss_pred             ccccccccccccCCccccccCCCCceee
Q 022694          155 ALIESSFFPALQGETGKMSASDPNSAIY  182 (293)
Q Consensus       155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~  182 (293)
                      .++.+++|..-+|  .|||||.+| .|.
T Consensus       579 ~V~LH~mVRDa~G--RKMSKSLGN-VID  603 (995)
T KOG0432|consen  579 EVLLHGLVRDAHG--RKMSKSLGN-VID  603 (995)
T ss_pred             heeechhhccccc--cccchhhcc-ccC
Confidence            4567999999998  699999997 553

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6

Probab=87.46  E-value=0.054  Score=51.63  Aligned_cols=66  Identities=23%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             eccccccCCc---ccccccccC-CccCCCCcccccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694          128 LIPCAIDQDP---YFRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  196 (293)
Q Consensus       128 ~vpvG~DQ~~---~~~laRdia-~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k  196 (293)
                      ..|.|.|+..   -...+.+|| +=||.++|..+.--+ -++.|. +|||||.+| .|.+.|     +||.++=-+-+
T Consensus       237 fEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~-~~~~g~-~kmSsSkG~-~~t~~e~L~~~~PE~lr~l~~~  311 (360)
T PF01921_consen  237 FEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEF-FLDKGG-GKMSSSKGN-GITPEEWLEYAPPESLRYLMAR  311 (360)
T ss_dssp             EEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE---EEES----------------HHHHHTTS-HHHHHHHHHC
T ss_pred             eccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeE-EEeCCC-cccccCCCC-ccCHHHHHHhcCHHHHHHHHcc
Confidence            5799999888   888999999 778988887754322 345563 599999987 777665     66666544433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.

>TIGR00456 argS arginyl-tRNA synthetase

Probab=87.43  E-value=0.13  Score=52.16  Aligned_cols=63  Identities=16%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             eccccccCCcccccccccCCccCCCCcc-cccc--cccccccCCccccccCCCCceeeeccChHHHHHHhhh
Q 022694          128 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  196 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r~n~~~p~-~l~~--~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k  196 (293)
                      +-.+|.||..|+.-...++..+|++.|. +.+.  .++.   |  .|||||.+| .|.+.|=.+++.++...
T Consensus       331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~---~--~kmSkr~Gn-~V~~~dll~~~~~ra~~  396 (566)
T TIGR00456       331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVP---L--GSMKTRRGN-VISLDNLLDEASKRAGN  396 (566)
T ss_pred             EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEE---C--CCCCccCCc-eeeHHHHHHHHHHHHHH
Confidence            3479999999999999999999987664 3333  3332   2  499999986 99998766665554444

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=87.38  E-value=0.11  Score=51.33  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=35.9

Q ss_pred             cccCCCCccceeccccccCC-cccccccccCCc-cCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694          117 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       117 Dil~~~ad~~~~vpvG~DQ~-~~~~laRdia~r-~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      .+|+..-|   +-.+|.|.. +|++--+-...- +|.+.+.. +++.+| .++|  +|||||.+| .|.+.|
T Consensus       214 ~~lg~~~D---ih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~GN-~i~~~d  278 (465)
T TIGR00435       214 KYLGDQID---IHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSLGN-FFTVRD  278 (465)
T ss_pred             HhcCCCce---eeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccCCC-cCCHHH
Confidence            35554444   458999984 565544433322 34333333 344443 4777  699999987 666644

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>PLN02381 valyl-tRNA synthetase

Probab=86.92  E-value=0.13  Score=55.77  Aligned_cols=56  Identities=23%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             CCCccceeccccccCCcccccccccCCcc--CCCCc--ccccccccccccCCccccccCCCCceeee
Q 022694          121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV  183 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r~--n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  183 (293)
                      |.+|   +..-|.||. ++=++|-++..+  ....|  .++.+++|.+-+|  .|||||.+| .|..
T Consensus       607 ~P~d---~~~~G~Dii-~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP  666 (1066)
T PLN02381        607 YPTS---VLETGHDIL-FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDP  666 (1066)
T ss_pred             CCCe---eeeecchhh-hhHHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCH
Confidence            4565   456899998 444555554332  22456  3456889988888  799999987 6644

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=86.74  E-value=0.21  Score=50.52  Aligned_cols=67  Identities=13%  Similarity=0.091  Sum_probs=51.4

Q ss_pred             cccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694          100 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  177 (293)
Q Consensus       100 ~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~  177 (293)
                      ..||.++-|..    ++|.+. +.   |+|..|.|...+-..=.-+.+.||.+.|...|.++|. ++|  .|||||..
T Consensus       278 ~i~PtY~fA~~----VDD~l~-GI---THViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g--~kLSKR~~  344 (567)
T PRK04156        278 RVWPTYNFAVA----VDDHLL-GV---THVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEG--FVLSTSKI  344 (567)
T ss_pred             EEEEEeccCce----eeecCC-CC---CeEEcccccccChHHHHHHHHHcCCCCceEEEcceec-CCC--ceeecccc
Confidence            35788776643    335543 33   6899999998887777788888999899999999886 566  69999973

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=86.56  E-value=0.23  Score=46.34  Aligned_cols=49  Identities=12%  Similarity=0.087  Sum_probs=42.0

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  177 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~  177 (293)
                      |+|.=|.|....-..=.-+.+.||.+.|...|.|+|.+.+|  .||||++.
T Consensus       194 ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKr~~  242 (299)
T PRK05710        194 THVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADG--QKLSKQNG  242 (299)
T ss_pred             CEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCC--CcccccCC
Confidence            57889999877766666777889999999999999999998  79999965

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=86.36  E-value=0.2  Score=51.20  Aligned_cols=56  Identities=23%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             CCCccceeccccccCCcccccccccC--CccCCCCc--ccccccccccccCCccccccCCCCceeee
Q 022694          121 GKDHLRCLIPCAIDQDPYFRMTRDVA--PRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV  183 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~~~~laRdia--~r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  183 (293)
                      +.+|   +...|.||....- .+-+.  ..+....|  .++.+.++...+|  +|||||.+| .|..
T Consensus       513 ~P~D---~~~~G~D~~~~W~-~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p  572 (601)
T PF00133_consen  513 YPVD---LYIEGKDQIRGWF-QSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP  572 (601)
T ss_dssp             SSBS---EEEEEGGGTTTHH-HHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred             CCcc---cccCCccchhhHH-HHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence            4455   5679999976532 11111  11111233  5566888888888  799999987 6654

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=86.30  E-value=0.27  Score=48.74  Aligned_cols=55  Identities=13%  Similarity=0.107  Sum_probs=45.1

Q ss_pred             cccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694          117 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  177 (293)
Q Consensus       117 Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~  177 (293)
                      |.+..   | |+|.-|.|+..+=..=+-+.+.||.+.|...|.|+|.+=+|  +||||++.
T Consensus       202 D~~mg---I-THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g--~kLSKr~~  256 (472)
T COG0008         202 DHLMG---I-THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDG--KKLSKRKG  256 (472)
T ss_pred             hhhcC---C-ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCC--CeecCccC
Confidence            65543   3 68999999988877777788889999999999999999443  79999986

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=86.25  E-value=0.15  Score=54.29  Aligned_cols=54  Identities=22%  Similarity=0.198  Sum_probs=35.5

Q ss_pred             eccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||..+ =++|-++....  ...|  .++.+.+|...+|  +|||||.+| .|...|
T Consensus       476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d  533 (874)
T PRK05729        476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD  533 (874)
T ss_pred             cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence            45789998875 34444433221  1345  4556888888888  799999987 666544

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=86.25  E-value=0.2  Score=52.87  Aligned_cols=53  Identities=23%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             eccccccCCcccccccccCCc---cCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||.... +.+-++..   ++. .|  .++.+.++...+|  +|||||.+| .|...|
T Consensus       489 ~~~~G~Di~~~w-~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~  546 (800)
T PRK13208        489 LRPQGHDIIRTW-LFYTILRAYLLTGK-LPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPEE  546 (800)
T ss_pred             EEEeecchhhhH-HHHHHHHHHHhcCC-CCcceEEEeeEEECCCC--CCCCCCCCC-CCCHHH
Confidence            456899997621 11222111   232 34  3445778877777  799999987 666533

>PLN02286 arginine-tRNA ligase

Probab=86.07  E-value=0.42  Score=48.57  Aligned_cols=63  Identities=14%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             eeccccccCCcccccccccCCccCCCCc------ccccccccccccCCccccccCCCCceeeeccChHHHHH
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN  192 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p------~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~  192 (293)
                      ++-.+|.||..|+.-...+++.+|+.++      .++.-.+|-+++|  +||||-.++ .|.|.|=-+++.+
T Consensus       330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~~  398 (576)
T PLN02286        330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAKS  398 (576)
T ss_pred             EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHHH
Confidence            3447899999999999999999997422      2334567866776  699988775 8998774444433

>PLN02843 isoleucyl-tRNA synthetase

Probab=85.98  E-value=0.24  Score=53.46  Aligned_cols=57  Identities=25%  Similarity=0.123  Sum_probs=34.3

Q ss_pred             CCCCccceeccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeee
Q 022694          120 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  183 (293)
Q Consensus       120 ~~~ad~~~~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L  183 (293)
                      .+.+|   +...|.||..   |-++..-++ -.|.+++ .++.|.++..-+|  +|||||.+| .|..
T Consensus       562 ~~PaD---l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~p  622 (974)
T PLN02843        562 SYPAD---LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVDP  622 (974)
T ss_pred             CCCce---eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCCH
Confidence            35565   4688999987   222222221 1343332 4455788877777  799999987 5543

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=85.23  E-value=0.15  Score=55.29  Aligned_cols=54  Identities=19%  Similarity=0.126  Sum_probs=36.0

Q ss_pred             eccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||.. +=++|-++..+.  ...|  .++.+.+|..-+|  +|||||.+| .|...|
T Consensus       494 ~~~~G~Dii~-~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d  551 (1052)
T PRK14900        494 VMETGHDIIF-FWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV  551 (1052)
T ss_pred             hhcccccHHh-HHHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence            4578999974 455565553332  1345  3556888877777  799999987 776654

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=84.87  E-value=0.29  Score=52.56  Aligned_cols=64  Identities=20%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             eccccccCCc-ccccc--cccCCccC-CCCc-ccccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694          128 LIPCAIDQDP-YFRMT--RDVAPRIG-YHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  196 (293)
Q Consensus       128 ~vpvG~DQ~~-~~~la--Rdia~r~n-~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k  196 (293)
                      +...|.||.+ |+.+.  ...| -|+ .+-| .++++.+|.. +|  +|||||.+| .|.+.|     +++.++=-+..
T Consensus       576 ~~~~GkDii~~H~~~~i~~~~a-~~~~~~~Pk~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d~i~~yGaDalRl~Ll~  649 (938)
T TIGR00395       576 WRISGKDLIPNHLTFYIFHHVA-IFPEKFWPRGIVVNGYVML-EG--KKMSKSKGN-VLTLEQAVEKFGADVARLYIAD  649 (938)
T ss_pred             EEEEeeccccchHHHHHHHHHH-cCCccccCcEEEEeceEEe-CC--ccccCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence            4679999976 43322  1111 011 1123 4445666654 66  799999987 776654     44555544444

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=84.47  E-value=0.19  Score=54.32  Aligned_cols=55  Identities=25%  Similarity=0.193  Sum_probs=35.2

Q ss_pred             CCCccceeccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceee
Q 022694          121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIY  182 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~  182 (293)
                      |.+|   +...|.||.. +=++|-++....  .+.|  .++.|.+|.+-+|  .|||||.+| .|.
T Consensus       537 ~P~d---~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId  595 (995)
T PTZ00419        537 FPTS---LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID  595 (995)
T ss_pred             CCCc---EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence            4455   4678899865 233443333221  1466  3556888888887  799999987 553

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=84.25  E-value=0.46  Score=46.73  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             ccccc-CCcccccccccCCccCCCCccc---ccccccccccCCccccccCCCCceeeecc-----ChHHHH
Q 022694          130 PCAID-QDPYFRMTRDVAPRIGYHKPAL---IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK  191 (293)
Q Consensus       130 pvG~D-Q~~~~~laRdia~r~n~~~p~~---l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~  191 (293)
                      -||.| +-||+|--+--++-..-.+|.+   +|+.+| ..+|  .|||||.+| .|.+.|     +|+.++
T Consensus       226 gGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l-~i~g--eKMSKSLGN-fiti~d~l~~~~p~~lR  292 (464)
T COG0215         226 GGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFL-NIDG--EKMSKSLGN-FITVRDLLKKYDPEVLR  292 (464)
T ss_pred             cCcccccCCCcccHHHHHHhhhCCCcceeEeEEccee-eecC--cCcccccCC-eeEHHHHHhhcCHHHHH
Confidence            46666 5688875444444333335533   455554 3466  799999987 777765     566665

>PLN02943 aminoacyl-tRNA ligase

Probab=84.19  E-value=0.29  Score=52.66  Aligned_cols=69  Identities=22%  Similarity=0.139  Sum_probs=43.1

Q ss_pred             CCCccceeccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceeeecc-----ChHHHH
Q 022694          121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK  191 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~  191 (293)
                      +.+|   +...|.||.. +=++|-++.-..  ...|  .++.+.++...+|  +|||||.+| .|...|     .++.++
T Consensus       535 yP~d---l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~~i~~ygaDalR  607 (958)
T PLN02943        535 YPTT---VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLDTIKEFGTDALR  607 (958)
T ss_pred             CCCe---EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHHHHHhcCChHHH
Confidence            4555   4578999984 456664443222  2345  3456788888887  799999987 776654     455555


Q ss_pred             HHhhh
Q 022694          192 NKINK  196 (293)
Q Consensus       192 ~KI~k  196 (293)
                      =-+..
T Consensus       608 ~~l~~  612 (958)
T PLN02943        608 FTLAL  612 (958)
T ss_pred             HHHHh
Confidence            44443

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=83.50  E-value=0.41  Score=51.19  Aligned_cols=53  Identities=21%  Similarity=0.152  Sum_probs=29.9

Q ss_pred             eccccccCCcc-cccccccC-CccCC-CCc-ccccccccccccCCccccccCCCCceeeec
Q 022694          128 LIPCAIDQDPY-FRMTRDVA-PRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       128 ~vpvG~DQ~~~-~~laRdia-~r~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +...|.||... +-+.+-.. --|+. +-| .++.+.++.. +|  +|||||.+| .|...
T Consensus       533 ~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp~  589 (897)
T PRK12300        533 WRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPLR  589 (897)
T ss_pred             EEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCHH
Confidence            45789999763 22221110 00111 334 4445677665 66  799999987 66553

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=82.63  E-value=0.28  Score=43.21  Aligned_cols=45  Identities=18%  Similarity=0.205  Sum_probs=35.0

Q ss_pred             cccccCCcccccccccCCccCCC-Cc--ccccccccccccCCccccccCC
Q 022694          130 PCAIDQDPYFRMTRDVAPRIGYH-KP--ALIESSFFPALQGETGKMSASD  176 (293)
Q Consensus       130 pvG~DQ~~~~~laRdia~r~n~~-~p--~~l~~~~lpgL~g~~~KMSkS~  176 (293)
                      .+|.||..|+.--+.+++.+|.+ +|  .++..++|.+-+|  +||||..
T Consensus       164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~--~kmS~R~  211 (212)
T cd00671         164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKE--GKMSTRA  211 (212)
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCC--CCCCCCC
Confidence            89999999999999999999975 33  3333467765445  7999975

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>TIGR00422 valS valyl-tRNA synthetase

Probab=82.59  E-value=0.29  Score=52.06  Aligned_cols=54  Identities=24%  Similarity=0.213  Sum_probs=34.9

Q ss_pred             eccccccCCcccccccccCCc--cCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r--~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||...+ ++|-++..  +..+.|  .++.+.++...+|  +|||||.+| .|...|
T Consensus       481 ~~~~G~Dii~fw-~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~  538 (861)
T TIGR00422       481 LLVTGYDIIFFW-VARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD  538 (861)
T ss_pred             eeecchhhhhHH-HHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence            568899997753 23333322  111345  4556888888887  799999987 676544

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PLN02959 aminoacyl-tRNA ligase

Probab=82.52  E-value=0.25  Score=53.82  Aligned_cols=53  Identities=21%  Similarity=0.098  Sum_probs=29.6

Q ss_pred             eccccccCCcccccccccCCc---cCC-CCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFRMTRDVAPR---IGY-HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r---~n~-~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||...+- +.-+...   ++. |-|. ++.+.+|. ++|  +|||||.+| .|.+.|
T Consensus       674 l~~sG~Dii~~wl-~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d  731 (1084)
T PLN02959        674 LRVSGKDLIQNHL-TFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ  731 (1084)
T ss_pred             EEEecccHHHHHH-HHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence            4567888866542 2222211   121 2232 33456555 676  799999987 666544

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=82.24  E-value=0.32  Score=52.47  Aligned_cols=57  Identities=19%  Similarity=0.014  Sum_probs=32.9

Q ss_pred             CCCccceeccccccCCcc---cccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694          121 GKDHLRCLIPCAIDQDPY---FRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~~---~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +.+|   +...|.||...   ..+..-.+ -+|.+++ .++.+.++...+|  +|||||.+| .|...
T Consensus       544 ~Pad---~~~~G~Di~r~Wf~~l~~~~~~-~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP~  604 (975)
T PRK06039        544 FPAD---FIVEGIDQTRGWFYTLLALSTA-LFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDPF  604 (975)
T ss_pred             CCce---EEEechhhHhhHHHHHHHHHHH-hcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCHH
Confidence            4454   56789999752   11111111 1333322 3445777776677  799999987 66543

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=82.09  E-value=0.32  Score=45.58  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             eccccccCCcccc---cccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFR---MTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~---laRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +..+|.|+..++.   .|--.  -.+.+.|..+ .+.++ .++|  +|||||.+| .|.+.|
T Consensus       238 v~~~G~D~~~fh~~~~pa~l~--~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~~  293 (319)
T cd00814         238 VHFIGKDIIRFHAIYWPAMLL--GAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPDD  293 (319)
T ss_pred             EEEEeechhhhhHHHHHHHHH--hCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHHH
Confidence            4589999988641   12111  1244545433 34444 3456  799999987 777643

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>PLN02563 aminoacyl-tRNA ligase

Probab=81.69  E-value=0.41  Score=51.53  Aligned_cols=41  Identities=10%  Similarity=0.015  Sum_probs=23.8

Q ss_pred             CCCccceeccccccC-CcccccccccCCc------cCCCCcc--ccccccccc
Q 022694          121 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPR------IGYHKPA--LIESSFFPA  164 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ-~~~~~laRdia~r------~n~~~p~--~l~~~~lpg  164 (293)
                      +.+|   +..+|.|| .-|+-.+|-....      ....+|.  ++.+.+|-+
T Consensus       615 ~PvD---~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~  664 (963)
T PLN02563        615 MPVD---LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILG  664 (963)
T ss_pred             CCCc---EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeec
Confidence            4566   57899999 4555555554322      1225673  344677765

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=81.61  E-value=0.52  Score=47.49  Aligned_cols=54  Identities=24%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             eccccccCCccccc-cccc--CCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFRM-TRDV--APRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~l-aRdi--a~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.|+.+++.+ --.+  +.....+.| .++.+.++. ++|  +|||||.+| .|...|
T Consensus       290 ~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d  347 (556)
T PRK12268        290 YYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD  347 (556)
T ss_pred             EEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence            45779999775432 1111  121113445 444466664 566  799999987 666544

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=81.07  E-value=0.48  Score=46.97  Aligned_cols=55  Identities=29%  Similarity=0.471  Sum_probs=36.2

Q ss_pred             eccccccCCc---ccccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDP---YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~---~~~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      ..|.|.|+.-   -..-+++|++ -||+++|..+.-- .-+|+| ++|||||.+| .|.+.|
T Consensus       232 ~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE-~i~lkg-~~~mSsSkG~-~i~~~d  290 (521)
T COG1384         232 FEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYE-WILLKG-GGKMSSSKGN-VISLSD  290 (521)
T ss_pred             cccCCcccccccCchHHHHHHHHHhcCCCCCCCCceE-EEEecC-CcccccCCCc-EEcHHH
Confidence            5799999754   2334455555 4677777765422 234566 4899999986 787776

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=80.52  E-value=0.39  Score=51.00  Aligned_cols=59  Identities=20%  Similarity=0.109  Sum_probs=35.4

Q ss_pred             CCCccceeccccccC-CcccccccccC---Cc---cCCCCcc--ccccccccc----ccCCcc-----------------
Q 022694          121 GKDHLRCLIPCAIDQ-DPYFRMTRDVA---PR---IGYHKPA--LIESSFFPA----LQGETG-----------------  170 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ-~~~~~laRdia---~r---~n~~~p~--~l~~~~lpg----L~g~~~-----------------  170 (293)
                      +.+|   +..+|.|| .-|+-.+|-..   ..   +...+|.  ++.+.+|-+    -+|  +                 
T Consensus       519 ~PvD---~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G--~~~~~~~~~~~~~~~~~~  593 (842)
T TIGR00396       519 LPVD---LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNG--KSPPDELTERDEKAKDKS  593 (842)
T ss_pred             CCCc---EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCC--CccChhhhcccccccccc
Confidence            4565   57899999 44444444321   11   1224663  455777776    455  4                 


Q ss_pred             ----------ccccCCCCceeeecc
Q 022694          171 ----------KMSASDPNSAIYVTD  185 (293)
Q Consensus       171 ----------KMSkS~~~s~I~L~D  185 (293)
                                |||||.+| .|.+.|
T Consensus       594 ~~~~~~~~~~KMSKS~GN-~v~p~~  617 (842)
T TIGR00396       594 GGELVVVGYEKMSKSKGN-GIDPQE  617 (842)
T ss_pred             CCcccccchhhhhhcCCC-cCCHHH
Confidence                      99999987 666543

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PLN02882 aminoacyl-tRNA ligase

Probab=80.19  E-value=0.47  Score=52.10  Aligned_cols=55  Identities=20%  Similarity=0.047  Sum_probs=34.4

Q ss_pred             CCCccceeccccccCCcccccccccCC---ccCCCCcc-cccccccccccCCccccccCCCCceee
Q 022694          121 GKDHLRCLIPCAIDQDPYFRMTRDVAP---RIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY  182 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~~~~laRdia~---r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~  182 (293)
                      +.+|   ++.-|.||.... +.+-++.   -||.++|. ++.+.++..=+|  +|||||.+| .|.
T Consensus       566 ~PaD---~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId  624 (1159)
T PLN02882        566 FPAD---FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD  624 (1159)
T ss_pred             CCce---EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence            3465   578999998854 3332222   24555553 345777765566  799999987 553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
2quh_A	477	Crystal Structures Of Human Tryptophanyl-Trna Synth		4e-96
1ulh_A	390	A Short Peptide Insertion Crucial For Angiostatic A		6e-96
1o5t_A	378	Crystal Structure Of The Aminoacylation Catalytic F		6e-96
2ake_A	384	Structure Of Human Tryptophanyl-Trna Synthetase In		6e-96
2quj_B	384	Crystal Structures Of Human Tryptophanyl-Trna Synth		7e-96
2azx_A	477	Charged And Uncharged Trnas Adopt Distinct Conforma		5e-92
1r6t_A	477	Crystal Structure Of Human Tryptophanyl-Trna Synthe		5e-92
1r6u_A	437	Crystal Structure Of An Active Fragment Of Human Tr		9e-92
3hv0_A	393	Tryptophanyl-Trna Synthetase From Cryptosporidium P		1e-74
3kt0_A	438	Crystal Structure Of S. Cerevisiae Tryptophanyl-Trn		5e-73
2ip1_A	432	Crystal Structure Analysis Of S. Cerevisiae Tryptop		5e-73
3i05_A	395	Tryptophanyl-Trna Synthetase From Trypanosoma Bruce		8e-73
3tze_A	406	Crystal Structure Of A Tryptophanyl-Trna Synthetase		1e-61
3foc_A	451	Tryptophanyl-Trna Synthetase From Giardia Lamblia L		5e-50
3jxe_A	392	Crystal Structure Of Pyrococcus Horikoshii Tryptoph		4e-47
3hzr_A	386	Tryptophanyl-Trna Synthetase Homolog From Entamoeba		4e-34
3a04_A	372	Crystal Structure Of Tryptophanyl-Trna Synthetase F		3e-15

>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase In Complex With Trp Length = 477

Iteration: 1
 Score =  347 bits (890), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 166/290 (57%), Positives = 212/290 (73%), Gaps = 3/290 (1%)
Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           +FT ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFS 236
Query: 61  DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
           D DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct: 237 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
              +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
           S+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 416
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           +K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 417 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity Of Human Tryptophanyl-Trna Synthetase Length = 390

Iteration: 1
 Score =  347 bits (889), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 2/287 (0%)
Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 99  TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLD 158
Query: 64  YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 121
           Y+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              
Sbjct: 159 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 218
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 219 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 278
Query: 182 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+
Sbjct: 279 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 338
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 339 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385

>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment Of Human Tryptophanyl-Trna Synthetase Length = 378

Iteration: 1
 Score =  347 bits (889), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 2/287 (0%)
Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 87  TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLD 146
Query: 64  YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 121
           Y+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              
Sbjct: 147 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 206
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 207 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
Query: 182 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+
Sbjct: 267 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 326
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 327 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373

>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex With Trna(Trp) Length = 384

Iteration: 1
 Score =  347 bits (889), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 2/287 (0%)
Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 87  TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLD 146
Query: 64  YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 121
           Y+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              
Sbjct: 147 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 206
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 207 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
Query: 182 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+
Sbjct: 267 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 326
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 327 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373

>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations When Complexed With Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score =  333 bits (855), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 3/290 (1%)
Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           +FT ++LQD F VPLVIQ TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 236
Query: 61  DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
           D DY G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct: 237 DLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
              +  ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPN 356
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
           S+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQI 416
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           +K+Y +G  LTGE+K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 417 RKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466

>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score =  333 bits (855), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 3/290 (1%)
Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           +FT ++LQD F VPLVIQ TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 236
Query: 61  DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
           D DY G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct: 237 DLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
              +  ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPN 356
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
           S+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQI 416
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           +K+Y +G  LTGE+K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 417 RKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466

>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human Tryptophanyl-Trna Synthetase With Cytokine Activity Length = 437

Iteration: 1
 Score =  333 bits (853), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 3/290 (1%)
Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           +FT ++LQD F VPLVIQ TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct: 131 IFT-KWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 189
Query: 61  DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
           D DY G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA           
Sbjct: 190 DLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 249
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
              +  ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPN
Sbjct: 250 FRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPN 309
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
           S+I++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct: 310 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQI 369
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           +K+Y +G  LTGE+K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 370 RKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 419

>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum Length = 393

Iteration: 1
 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/283 (48%), Positives = 189/283 (66%), Gaps = 3/283 (1%)
Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
           +FT +YLQD FKVPLVIQLTDDEK ++K NL++EE+   A EN KDIIACGFD   TFIF
Sbjct: 97  LFT-KYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIF 155
Query: 60  SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 119
           ++ +Y+    Y +++++ K ++ +++  IFGF    ++GK +FP VQA            
Sbjct: 156 TNLEYIA-ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIF 214
Query: 120 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
            G+  + CL+P AIDQDPYFRM RDVAPR+GY KP+ I S F P+LQG   KMSAS  NS
Sbjct: 215 GGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNS 274
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 239
           +I+V D+          YAFSGGQ + E  R+LGANL+VD+  +YL F +EDD +LE I 
Sbjct: 275 SIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIG 334
Query: 240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
           K+Y +G ML+GE+K  L + L +L + HQ  R A+ D+++  F
Sbjct: 335 KKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKF 377

>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna Synthet Length = 438

Iteration: 1
 Score =  271 bits (692), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 138/286 (48%), Positives = 184/286 (64%), Gaps = 1/286 (0%)
Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
            ++LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFSD 
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186
Query: 63  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 122
            Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q                
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
           D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 183 VTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
           +TD+          YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
            +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl Trna Synthetase Length = 432

Iteration: 1
 Score =  271 bits (692), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 138/286 (48%), Positives = 184/286 (64%), Gaps = 1/286 (0%)
Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
            ++LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFSD 
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186
Query: 63  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 122
            Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q                
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
           D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 183 VTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
           +TD+          YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
            +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei Length = 395

Iteration: 1
 Score =  270 bits (690), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 139/287 (48%), Positives = 188/287 (65%), Gaps = 4/287 (1%)
Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
           MFT ++LQD+F+VPLVIQ+TDDEK  ++N+ +E+ + +  EN KDIIA GFD   TFIF 
Sbjct: 101 MFT-KWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFR 159
Query: 61  DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX-X 119
           DFDY+G   Y+ + K+ +  T ++V G FGF  ED+ G+  FP +QA             
Sbjct: 160 DFDYMG-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFP 218
Query: 120 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
               ++ CLIP AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G  GKMS+S   +
Sbjct: 219 PSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GT 277
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 239
           A+ +TD+          +AFSGG  + + H  LGAN+EVD+P+++LSFFLEDD EL  +K
Sbjct: 278 AVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVK 337
Query: 240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 286
           KEY  G ++TGEVK+ L   +T + + HQ  R  VTDE V  F + R
Sbjct: 338 KEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTR 384

>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From Encephalitozoon Cuniculi Bound To Tryptophan Length = 406

Iteration: 1
 Score =  233 bits (594), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/281 (40%), Positives = 176/281 (62%), Gaps = 4/281 (1%)
Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
           +Y+QDAFK+ LVIQ+TDDEK +WK++ +E++    REN KDI+  GFD   T+IFS+ + 
Sbjct: 127 KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE- 185
Query: 65  VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDH 124
               F +N++K++K +  N+ + +FGF    +IG+V FP  +              G   
Sbjct: 186 ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA-- 243
Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184
             CL+P A+DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+IY+ 
Sbjct: 244 -MCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD 302
Query: 185 DSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
           D+          YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y  
Sbjct: 303 DAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIK 362
Query: 245 GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 285
           G + + E+K++   V+ E V R+Q +R  VTD+ + AF+ +
Sbjct: 363 GEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 403

>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia Length = 451

Iteration: 1
 Score =  194 bits (493), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 167/339 (49%), Gaps = 58/339 (17%)
Query: 4   NRYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTK------- 55
            +YLQDAFK  +VIQ+TDDEK +  ++LS  E     REN KDIIACGFD  K       
Sbjct: 116 TKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINS 175
Query: 56  --------------------------TFIFSDFDYVGGAFY--KNMVKVAKC----VTYN 83
                                     +F FS+   VG A +  K M+ V       + + 
Sbjct: 176 QYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFT 235
Query: 84  KVVGIFGFTGEDHIGKVS--------------FPPVQAVXXXXXXXXXXXXGKDHLRCLI 129
           +V    G   ED    VS                PV  V                  CLI
Sbjct: 236 RVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAM----CLI 291
Query: 130 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXX 189
              I+QDPYFR+ RD+APR+G+ K A +   F P LQG   KMSASDPNSAIY+TD+   
Sbjct: 292 ASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQ 351
Query: 190 XXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLT 249
                  YAFSGG+++ E HR  GA+L VD+ V+YL  F++DDAELE +K +Y  G +LT
Sbjct: 352 IKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLT 411
Query: 250 GEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           GEVK  L  +L  L++ H   R  V   M+++F   + L
Sbjct: 412 GEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450

>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Tryptophanyl-Trna Synthetase In Complex With Trpamp Length = 392

Iteration: 1
 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/284 (36%), Positives = 159/284 (55%), Gaps = 15/284 (5%)
Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
            F  ++LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N  DIIA GFD  KTFIF
Sbjct: 94  FFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIF 153
Query: 60  SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 119
            + ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q             
Sbjct: 154 QNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF------- 204
Query: 120 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
              +  RCLIP AIDQDPY+R+ RD A  +GY+K A + S F P+L   +GKMSAS P +
Sbjct: 205 ---ERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPET 261
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHI 238
           AIY+TDS          +  +GG+ +++  R+ G   E  +  K+L  FF EDD +L+  
Sbjct: 262 AIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKER 321
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
                 G +  GE K+ L   + E ++ HQ  R    +++V+ F
Sbjct: 322 YYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364

>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba Histolytica Length = 386

Iteration: 1
 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 146/280 (52%), Gaps = 4/280 (1%)
Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
           RYLQDAF + ++IQ+ DD K + +  ++ E+ +++ +  K I+A GF+  KTFI++D+ Y
Sbjct: 107 RYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQY 166
Query: 65  VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDH 124
            G   Y+ +  V K   YN V   F F   D+IGK++ P +                   
Sbjct: 167 FG-KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP-- 223
Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184
            RCL+  +I    +  +   +A  + + +P ++     P L G T     SD NS I ++
Sbjct: 224 ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNS-ILLS 282
Query: 185 DSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
           D+           AFSGG+ + E H+KLG   ++D+  + L+ F  D+A+++ ++++Y  
Sbjct: 283 DNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSK 342
Query: 245 GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 284
           G +L+GE+K+ ++  + + +  +   +  +T   + A+++
Sbjct: 343 GELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYIS 382

>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 23/272 (8%)
Query: 6   YLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFD 63
           YLQ + FKV   + + D E    + +  EE+ R+A  E   ++IA G D   T  +  F 
Sbjct: 96  YLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFY--FQ 151
Query: 64  YVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 122
              G  Y  ++++ +  VT  ++  I+G   E    K+     QA             G 
Sbjct: 152 TNRGTPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYG-GY 207
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKMSASDPN 178
            H+  ++P   DQDP+ R+TRD+A R+       +PA       P L G   KMS+S P+
Sbjct: 208 RHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KMSSSRPD 263
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LEDDAELE 236
           S I++TD            A +GG+ + E  R+LG   EV   V ++  +  + DD E++
Sbjct: 264 STIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMPDDGEVK 321
Query: 237 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 268
           HI      G +L GE KQ   + L   +  HQ
Sbjct: 322 HIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	1e-120
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	1e-120
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	1e-118
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	1e-117
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	1e-115
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	1e-110
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	1e-108
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	1e-107
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	2e-94
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	3e-73
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	2e-25
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	2e-24
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	1e-22
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	3e-20
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	1e-19
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	6e-17
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	8e-15
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	2e-13
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	3e-13
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	9e-12
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	5e-11
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	1e-09
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	1e-07
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	1e-06
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	2e-06
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	2e-06
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	2e-06
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	6e-06

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477

 Score =  352 bits (905), Expect = e-120
 Identities = 178/291 (61%), Positives = 226/291 (77%), Gaps = 2/291 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 180 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLD 239

Query: 64  YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
           Y+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  
Sbjct: 240 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 299

Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 300 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 359

Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+
Sbjct: 360 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 419

Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 292
           Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L    
Sbjct: 420 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437

 Score =  351 bits (901), Expect = e-120
 Identities = 179/291 (61%), Positives = 227/291 (78%), Gaps = 2/291 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 133 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLD 192

Query: 64  YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
           Y+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  
Sbjct: 193 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 252

Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
           +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I
Sbjct: 253 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 312

Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
           ++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+
Sbjct: 313 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 372

Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 292
           Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F
Sbjct: 373 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432

 Score =  344 bits (883), Expect = e-118
 Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 1/286 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
            ++LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFSD 
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186

Query: 63  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
            Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q   +FPSSFP++    
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246

Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
           D   CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306

Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
           +TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366

Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
            +G +L+GE+K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392

 Score =  341 bits (876), Expect = e-117
 Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 15/287 (5%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
            ++LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N  DIIA GFD  KTFIF + 
Sbjct: 97  TKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNS 156

Query: 63  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
           ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q  P+F           
Sbjct: 157 EFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKR------ 208

Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
               CLIP AIDQDPY+R+ RD A  +GY+K A + S F P+L   +GKMSAS P +AIY
Sbjct: 209 ----CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIY 264

Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKE 241
           +TDS + ++ K+ K+  +GG+ +++  R+ G   E  +  K+L  FF EDD +L+     
Sbjct: 265 LTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYA 324

Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
              G +  GE K+ L   + E ++ HQ  R    +++V+ F     L
Sbjct: 325 CKNGELTCGECKRYLISKIQEFLKEHQ-RRRKKAEKLVEKFKYTGKL 370

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393

 Score =  335 bits (861), Expect = e-115
 Identities = 148/284 (52%), Positives = 204/284 (71%), Gaps = 2/284 (0%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
            +YLQD FKVPLVIQLTDDEK ++K+ L++EE+   A EN KDIIACGFD   TFIF++ 
Sbjct: 99  TKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNL 158

Query: 63  DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
           +Y+    Y +++++ K ++ +++  IFGF    ++GK +FP VQA P+F SSFPH+F G+
Sbjct: 159 EYIA-ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGR 217

Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
             + CL+P AIDQDPYFRM RDVAPR+GY KP+ I S F P+LQG   KMSAS  NS+I+
Sbjct: 218 TDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIF 277

Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
           V D+ ++I+NKI KYAFSGGQ + E  R+LGANL+VD+  +YL F +EDD +LE I K+Y
Sbjct: 278 VNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKY 337

Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 286
            +G ML+GE+K  L + L +L + HQ  R A+ D+++  F    
Sbjct: 338 SSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKS 381

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406

 Score =  323 bits (830), Expect = e-110
 Identities = 122/285 (42%), Positives = 186/285 (65%), Gaps = 4/285 (1%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            +Y+QDAFK+ LVIQ+TDDEK +WK++ +E++    REN KDI+  GFD   T+IFS+ +
Sbjct: 126 CKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE 185

Query: 64  YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
                F +N++K++K +  N+ + +FGF    +IG+V FP  +  P F SSF  +  G  
Sbjct: 186 A-SHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA- 243

Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 183
              CL+P A+DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+IY+
Sbjct: 244 --MCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYL 301

Query: 184 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYG 243
            D+   I+ KI  YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y 
Sbjct: 302 DDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYI 361

Query: 244 AGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
            G + + E+K++   V+ E V R+Q +R  VTD+ + AF+ +   
Sbjct: 362 KGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395

 Score =  318 bits (817), Expect = e-108
 Identities = 149/286 (52%), Positives = 203/286 (70%), Gaps = 3/286 (1%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            ++LQD+F+VPLVIQ+TDDEK  ++N+ +E+ + +  EN KDIIA GFD   TFIF DFD
Sbjct: 103 TKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFD 162

Query: 64  YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GK 122
           Y+G   Y+ + K+ +  T ++V G FGF  ED+ G+  FP +QA PSF ++FPH+F    
Sbjct: 163 YMG-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSM 221

Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
            ++ CLIP AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G  GKMS+S    A+ 
Sbjct: 222 GNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVL 280

Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
           +TD+ K +K+KINK+AFSGG  + + H  LGAN+EVD+P+++LSFFLEDD EL  +KKEY
Sbjct: 281 LTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEY 340

Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             G ++TGEVK+ L   +T + + HQ  R  VTDE V  F + R +
Sbjct: 341 MLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386

 Score =  316 bits (810), Expect = e-107
 Identities = 84/285 (29%), Positives = 159/285 (55%), Gaps = 4/285 (1%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
            RYLQDAF + ++IQ+ DD K + +  ++ E+ +++ +  K I+A GF+  KTFI++D+ 
Sbjct: 106 ARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQ 165

Query: 64  YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
           Y G   Y+ +  V K   YN V   F F   D+IGK++ P +     F  S+ H FS   
Sbjct: 166 YFG-KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP- 223

Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 183
             RCL+  +I    +  +   +A  + + +P ++     P L G   K      +++I +
Sbjct: 224 -ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILL 281

Query: 184 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYG 243
           +D+AK ++ KINK AFSGG+ + E H+KLG   ++D+  + L+ F  D+A+++ ++++Y 
Sbjct: 282 SDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYS 341

Query: 244 AGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
            G +L+GE+K+ ++  + + +  +   +  +T   + A+++    
Sbjct: 342 KGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451

 Score =  285 bits (730), Expect = 2e-94
 Identities = 134/335 (40%), Positives = 184/335 (54%), Gaps = 50/335 (14%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
            +YLQDAFK  +VIQ+TDDEK +  ++LS  E     REN KDIIACGFD  KTFIF + 
Sbjct: 116 TKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINS 175

Query: 63  DYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
            Y+     Y+    V + +  +++   FGF+ + ++G  +FPP Q +P + + F  L   
Sbjct: 176 QYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFT 235

Query: 122 KDH------------------------------------------------LRCLIPCAI 133
           +                                                    CLI   I
Sbjct: 236 RVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGI 295

Query: 134 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 193
           +QDPYFR+ RD+APR+G+ K A +   F P LQG   KMSASDPNSAIY+TD+   IKNK
Sbjct: 296 EQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNK 355

Query: 194 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK 253
           IN+YAFSGG+++ E HR  GA+L VD+ V+YL  F++DDAELE +K +Y  G +LTGEVK
Sbjct: 356 INRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVK 415

Query: 254 QRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
             L  +L  L++ H   R  V   M+++F   + L
Sbjct: 416 ATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348

 Score =  228 bits (582), Expect = 3e-73
 Identities = 52/293 (17%), Positives = 107/293 (36%), Gaps = 25/293 (8%)

Query: 4   NRYLQDAFKVPLVIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF-- 59
           N          ++I + D    M    N  + + + L R   +   ACG ++  T     
Sbjct: 64  NTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWA 123

Query: 60  SDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSS 114
           S+F     ++ + M+ +A+  T ++V     I G    D +   ++ +P +QA   F   
Sbjct: 124 SEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELV 183

Query: 115 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 174
                        +    IDQ     +  + A   G   P  +      +L G   KMS 
Sbjct: 184 PEG--------IDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSK 235

Query: 175 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE 234
           SDP  AI++ D+ + +  KI++   +      +          +      L+   +   +
Sbjct: 236 SDPQGAIFMDDTEQEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIYTD 293

Query: 235 LEHIKKEYGAGGMLTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 283
           +E I++++    M   E+K  +A  +  ++    E  +    +     V ++ 
Sbjct: 294 IESIQEDF--SSMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373

 Score =  102 bits (256), Expect = 2e-25
 Identities = 47/263 (17%), Positives = 99/263 (37%), Gaps = 32/263 (12%)

Query: 19  LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-K 75
             +++  M  +L  ++ +++     +   +CG ++        S+        Y ++V  
Sbjct: 101 HLNNK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLD 156

Query: 76  VAKCVTYNKVVGIFGFTG-----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LI 129
           +++    N++       G     E++  ++ +P +Q    F             L   + 
Sbjct: 157 ISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIF------------FLNVDIC 204

Query: 130 PCAIDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAK 188
              IDQ     + R+        K  +I S    P L     KMS SD NSAI++ DS  
Sbjct: 205 QLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSES 264

Query: 189 AIKNKINK-YAFSGGQE-----SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
            +  KI K Y      E     +        +  E ++  K  +   +    L+ ++ +Y
Sbjct: 265 DVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDY 324

Query: 243 GAGGMLTGEVKQRLAKVLTELVE 265
             G +   ++K  +A  + +L++
Sbjct: 325 VNGFIHPLDLKDNVAMYINKLLQ 347

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394

 Score =  100 bits (251), Expect = 2e-24
 Identities = 58/317 (18%), Positives = 105/317 (33%), Gaps = 52/317 (16%)

Query: 5   RYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII--------ACGFDVTK 55
                A  +V   + L D    +    +  E   +    AK           +    + K
Sbjct: 64  ADFLKAGCEV--TVLLADLHAFLDNMKAPLE---VVNYRAKYYELTIKAILRSINVPIEK 118

Query: 56  T-FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPS 110
             F+      +   +  ++ +++  V+ N                 +  + +P +QA+  
Sbjct: 119 LKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDE 178

Query: 111 FPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGET 169
                         L        +DQ   F +  +  P +GY K A + +   P L    
Sbjct: 179 Q------------FLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG- 225

Query: 170 GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-------ESVELHRKLGANLEVDIPV 222
           GKMSASDPNS I + +  K +K KIN    S G          V+    +    E+    
Sbjct: 226 GKMSASDPNSKIDLLEEPKQVKKKINSAFCSPGNVEENGLLSFVQYV--IAPIQELKFGT 283

Query: 223 KYLSFFLEDD---------AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 273
            +  FF++              E +K  +    +   ++K  +A  + EL+E  +   A 
Sbjct: 284 NHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN 343

Query: 274 VTDEMVDAFMAVRPLPN 290
              E  +A     P+  
Sbjct: 344 -NKEFQEASEKGYPVAT 359

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score = 96.5 bits (240), Expect = 1e-22
 Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 40/265 (15%)

Query: 26  MWKNLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTY 82
           +   L  E+ + + R   +   A G D+ K  F++ S+        Y + ++ + +  T 
Sbjct: 90  VGGEL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTI 147

Query: 83  NKV---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDP 137
            ++     I G T       +V +P +Q    F             L+  +    +DQ  
Sbjct: 148 ARIKKCCTIMGKTEGTLTAAQVLYPLMQCCDIF------------FLKADICQLGLDQRK 195

Query: 138 YFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 196
              + R+    IG   KP ++       L+    KMS SDP+SAI++ D+ + +  KI +
Sbjct: 196 VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ 255

Query: 197 YAF-------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL---------EHIKK 240
            A+       +                 V    + + +     A           E +++
Sbjct: 256 -AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQ 314

Query: 241 EYGAGGMLTGEVKQRLAKVLTELVE 265
            + +  +    +K  L   +  L+E
Sbjct: 315 AFVSDEVSEDALKSCLIDEVNALLE 339

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score = 89.5 bits (222), Expect = 3e-20
 Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 26/242 (10%)

Query: 33  EESQRLARENAKDIIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFG 90
           ++     + N   + A G   +   +  ++        +   V  +A+    + V  ++G
Sbjct: 438 KDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG 497

Query: 91  FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 150
               +  G+V    ++           L     H    +             R+      
Sbjct: 498 GEVRN-AGQVIAALMRVAT-------ALMLSVSH----VISTSLDGHINAFAREYTKERI 545

Query: 151 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES----V 206
                       PAL       +    +  +Y+ D+   I+ KI K A+S   E     +
Sbjct: 546 --DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNEEANPVI 602

Query: 207 ELHRKL---GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 263
            + + L      L ++                E +  + G+G +   ++K  + ++L + 
Sbjct: 603 SVAQHLLAQHGALSIERGEANGGNV--SYNTPEALVADCGSGALHPADLKAAVLQLLLDR 660

Query: 264 VE 265
             
Sbjct: 661 SA 662

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 54/290 (18%), Positives = 101/290 (34%), Gaps = 59/290 (20%)

Query: 19  LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMVKV 76
           + D      + +     +       K I   G D  K      S+     G +++ ++ +
Sbjct: 79  INDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI-LEKGDYWQTVIDI 137

Query: 77  AKCVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIP 130
           +K VT ++V+                 K+ +P +Q    F            +    +  
Sbjct: 138 SKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIF------------YQGVTIAH 185

Query: 131 CAIDQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE------------- 168
             +DQ     +  +VA ++ YH         KP  +       LQ               
Sbjct: 186 AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKE 245

Query: 169 ---TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRKLGAN 215
                KMS S P SA+++ DS + I+ K+ K AF        +   + VE  + R+    
Sbjct: 246 IKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFREEPTE 304

Query: 216 LEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
             V  P K+           E +K+++  G +   ++K  +A+ L  L+E
Sbjct: 305 FTVHRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364

 Score = 79.0 bits (195), Expect = 6e-17
 Identities = 59/267 (22%), Positives = 101/267 (37%), Gaps = 46/267 (17%)

Query: 31  SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNKV---- 85
            ++  +  AR   + + A G  V +       +      ++  +++VAK  +  +V    
Sbjct: 87  DMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRAL 146

Query: 86  --VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMT 142
             +G      E    K+ +P +Q    F            ++   I    +DQ     + 
Sbjct: 147 TIMGRRAEEAEVDASKLIYPLMQVSDIF------------YMDLDIALGGMDQRKAHMLA 194

Query: 143 RDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSA 187
           RDVA ++G  KP  I +    +LQG                  KMS S P +A++V DS 
Sbjct: 195 RDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSD 254

Query: 188 KAIKNKINKYAFSGGQ-------ESVELH--RKLGANLEVDIPVKYLSFFLEDDAELEHI 238
             I+ KI K      Q       E        + G  L VD P KY      +    E +
Sbjct: 255 DDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP--VEYTSYEEL 312

Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVE 265
           +++Y  G +   ++K  +A+ L E+V 
Sbjct: 313 ERDYTDGRLHPLDLKNAVAESLIEVVR 339

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)

Query: 134 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 185
           DQ P    TR++  R            +  L      P L G   KMS S  N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228

Query: 186 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
           SA  +  K+   Y   G   + +  R  G  +       +L  F  D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283

Query: 245 GGMLTGEVKQRLAKVLTELVE 265
           GG+   +VK+ L  VL  ++ 
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 134 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 185
           DQ  +  +TR++A R  Y         +  L      P   G   KMS S  N  I +  
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218

Query: 186 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 245
           S K ++  I +   +   +   + R    N E     KY   F   + E + + +     
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274

Query: 246 GMLTGEVKQRLAKVLTELVE 265
            +   + K+ L K +   + 
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 31/250 (12%)

Query: 32  VEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCVTYNKVVGIF 89
           +E          K ++ + G  + K       DY     Y  ++ +++  VT +      
Sbjct: 90  LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAG 149

Query: 90  GF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRD 144
                      +  + +P +QA+               +L+       IDQ   F     
Sbjct: 150 AEVVKQVEHPLLSGLLYPGLQALDEE------------YLKVDAQFGGIDQRKIFTFAEK 197

Query: 145 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 204
             P +GY K   + +   P L G   KMS+S+  S I + D  + +K K+ K     G  
Sbjct: 198 YLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNV 255

Query: 205 S-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 256
                   ++     L +   +    K+             ++K++ A  +  G++K  +
Sbjct: 256 ENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAAEVVHPGDLKNSV 313

Query: 257 AKVLTELVER 266
              L +L++ 
Sbjct: 314 EVALNKLLDP 323

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 37/250 (14%)

Query: 33  EESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKCVTYNKVVGIFG 90
           EE   +A  N K  IA G D ++  F+    +Y     Y  +++K+A+  T N+      
Sbjct: 84  EEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARITTLNRARRSMD 142

Query: 91  FTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDV 145
                  +  + ++ +P +QA+               HL   +    IDQ     + R+ 
Sbjct: 143 EVSRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQRKIHMLAREN 190

Query: 146 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-- 203
            PR+GY  P  + +     L G   KMS+S   + I V D  + ++ KI K     G   
Sbjct: 191 LPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRKAYCPAGVVE 247

Query: 204 --------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 255
                   +   L R     + V+   K+      + A  E + +++ +G +   ++K  
Sbjct: 248 ENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDFKSGQLHPLDLKIA 303

Query: 256 LAKVLTELVE 265
           +AK L  L+E
Sbjct: 304 VAKYLNMLLE 313

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)

Query: 134 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 184
           DQ  +  +TR++A R  +       +P AL+       P + G   KMS S  N  I + 
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207

Query: 185 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
           +  ++I  KI         +   +      + E  I   YLS+F      +E +K+EY  
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262

Query: 245 GGMLTGEVKQRLAKVLTELVE 265
            G+ T  VK+ L   L E + 
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 34/244 (13%)

Query: 33  EESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 91
           +E +++   N K   A G      ++  S+F      +  N+ ++A   T  +       
Sbjct: 80  DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKTTLKRARRSMEL 136

Query: 92  TG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDVA 146
                    + +V +P +Q   S             +L   +    ++Q     + R++ 
Sbjct: 137 IAREDENPKVAEVIYPIMQVNTSH------------YLGVDVAVGGMEQRKIHMLARELL 184

Query: 147 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK-YAFSGGQES 205
           P+    K   I +     L GE GKMS+S  N  I V DS + I+ KI K Y  +G  E 
Sbjct: 185 PK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRAKIKKAYCPAGVVEG 238

Query: 206 --VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 261
             +    K  L   L +  P K+           E ++  +    +    +K  +A+ L 
Sbjct: 239 NPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKELHPMYLKNAVAEELI 296

Query: 262 ELVE 265
           +++E
Sbjct: 297 KILE 300

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 134 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 184
           DQ  +  + RD+A ++          P A +  E +      G   KMS S  N  I + 
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204

Query: 185 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
            S K +K +I+    +      +       N+      K    FL D++  + ++  Y  
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257

Query: 245 GGMLTGEVKQRLAKVLTELVE 265
           GG   G  K  L +++    +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)

Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 218
           LQ  T KMS SD N  + I + +  K++  KI +    +        ++ +K G  NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259

Query: 219 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
           DI    LS        +  ++ ++   G + G +K  +A  ++ ++ 
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)

Query: 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 173
            +P   DQ  +  + RD+A R  ++     E   F               +LQ  T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203

Query: 174 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 227
            SD N  + I + +  K+I  KINK    A +  + + ++  K G  NL + +     S 
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258

Query: 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
                     I+ +Y AG  + G  K+ + + +  ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 219
           L     KMS SDPN  + I + D  K ++ KI   A   S G    +   K G  NL + 
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277

Query: 220 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
           I     S     +  +E ++ +Y   G   GE K  LA+V+   ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 219
           L   T KMS SDPN  + I + D AK I+ KI   A   S G    +   K G  NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243

Query: 220 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
           I     S        +E ++++Y   G   G  K  LA+V+ E + 
Sbjct: 244 I----YSTL--SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 219
           L   T KMS S  N    IY+ D  + +  KI + A   S  +       + G  N+ + 
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253

Query: 220 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
           I    L             +     ++  +        ++K  L +    L+ 
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	100.0
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	100.0
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	100.0
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	100.0
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	100.0
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	100.0
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	100.0
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	100.0
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	100.0
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	100.0
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	100.0
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	100.0
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	100.0
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	100.0
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	100.0
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	100.0
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	100.0
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	100.0
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	100.0
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	100.0
2pid_A	356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2ts1_A	419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	100.0
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	100.0
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	100.0
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	97.46
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	97.34
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	97.34
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	97.26
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	97.07
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	96.91
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	93.88
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	93.19
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	92.81
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	92.53
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	89.79
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	89.56
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	89.45
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	88.88
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	87.94
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	86.99
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	86.89
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	86.61
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	86.48
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	86.44
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	84.84
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	82.88
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	81.96
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	80.37
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	80.04

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=100.00  E-value=8.1e-75  Score=552.70  Aligned_cols=282  Identities=43%  Similarity=0.793  Sum_probs=261.8

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   81 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   81 (293)
                      ++ +|||+++||+++|+|||+||+++++.+++++++|+++++++|+|||+||+|++||.||+|++ +++..+++|+|++|
T Consensus       125 ~~-~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~-~~~~~~~~L~r~~t  202 (406)
T 3tze_A          125 LC-KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASH-HFEENILKISKTIN  202 (406)
T ss_dssp             HH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG-GGHHHHHHHHHTCB
T ss_pred             HH-HHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhHH-HHHHHHHHHHhhCC
Confidence            45 89999889999999999999987669999999999999999999999999999999999986 88999999999999


Q ss_pred             ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccc
Q 022694           82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF  161 (293)
Q Consensus        82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~  161 (293)
                      ++++++++|+.++.++|+|+||+|||||+++++||.|+.+++   |+||||.||++|+++|||+|+|||+++|.++++|+
T Consensus       203 ~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a---~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~  279 (406)
T 3tze_A          203 LNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAM---CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSL  279 (406)
T ss_dssp             HHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCE---EEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECC
T ss_pred             HHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCC---eEEeeccchHHHHHHHHHHHHHcCCCCceeeccCc
Confidence            999999998878899999999999999999999999998777   68999999999999999999999999999999999


Q ss_pred             cccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHh
Q 022694          162 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE  241 (293)
Q Consensus       162 lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~  241 (293)
                      ||||+|+++|||||+|+|+|+|+|+|++|++|||+||+|||+.+.+++++.|+||++|+++.|+++|+.+++++++|+++
T Consensus       280 l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~  359 (406)
T 3tze_A          280 LPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSG  359 (406)
T ss_dssp             CCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             ccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHH
Confidence            99999976799999988899999999999999999999999998888888999999999999999997668899999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694          242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  288 (293)
Q Consensus       242 y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~  288 (293)
                      |++|+++|++||+.||+.|+++|+|||+||++++++.|++++..+++
T Consensus       360 y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  406 (406)
T 3tze_A          360 YIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF  406 (406)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence            99999999999999999999999999999999999999999998764

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=100.00  E-value=6.5e-74  Score=543.72  Aligned_cols=282  Identities=30%  Similarity=0.632  Sum_probs=266.6

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   81 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   81 (293)
                      ++ +|||+++||+++|+|+|+||++.++.+++++++|+++++++|+|||+||+|++||.||+|++ .++..+++|+|++|
T Consensus       105 ~~-~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~~l~r~~t  182 (386)
T 3hzr_A          105 FA-RYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKATA  182 (386)
T ss_dssp             HH-HHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-HHHHHHHHHHHHCB
T ss_pred             HH-HHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-HHHHHHHHHHhhcc
Confidence            45 89999889999999999999998669999999999999999999999999999999999986 88899999999999


Q ss_pred             ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccc
Q 022694           82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF  161 (293)
Q Consensus        82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~  161 (293)
                      ++++++++|+.++.++|+|+||+|||||+++++|||||.++  ++|+||||.||+||+++|||+|+|||+++|.++++++
T Consensus       183 ~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~  260 (386)
T 3hzr_A          183 YNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKM  260 (386)
T ss_dssp             HHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECC
T ss_pred             HHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHHHHHHHHHHHHcCCCCceEeecCe
Confidence            99999999888889999999999999999999999999886  2279999999999999999999999999998889999


Q ss_pred             cccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHh
Q 022694          162 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE  241 (293)
Q Consensus       162 lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~  241 (293)
                      ||||+|+ +|||||+++|+|+|+|+|++|++|||++||||++.|++++++.|++|+++++++|+++|+.+++++++|+++
T Consensus       261 l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~  339 (386)
T 3hzr_A          261 VPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEK  339 (386)
T ss_dssp             CCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             eeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHH
Confidence            9999997 499999988999999999999999999899999999999999999999999999999987667899999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694          242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  288 (293)
Q Consensus       242 y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~  288 (293)
                      |++|+++|++||+.||+.|+++|+|||+||++++++.|++++..+++
T Consensus       340 ~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~  386 (386)
T 3hzr_A          340 YSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF  386 (386)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence            99999999999999999999999999999999999999999987653

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=100.00  E-value=9.7e-74  Score=544.35  Aligned_cols=285  Identities=53%  Similarity=0.912  Sum_probs=229.9

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT   81 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t   81 (293)
                      ++ +|||+++||+++|+|||+|++++++.+++++++|+++++++|+|||+||+|++||.||+|.+ .|+..+++|+|++|
T Consensus       102 ~~-~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~v~~l~r~~t  179 (395)
T 3i05_A          102 FT-KWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG-CMYRTVAKIERAFT  179 (395)
T ss_dssp             HH-HHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT-TSHHHHHHHHHHSB
T ss_pred             HH-HHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH-HHHHHHHHHHhhCC
Confidence            45 89999889999999999998887679999999999999999999999999999999999986 78899999999999


Q ss_pred             ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCC-CccceeccccccCCcccccccccCCccCCCCccccccc
Q 022694           82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  160 (293)
Q Consensus        82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~  160 (293)
                      ++++++++|+.++.++|+|+||+|||||++.++||||++++ .+.+|+||||.||+||+++|||+|+|||+++|.++++|
T Consensus       180 ~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~  259 (395)
T 3i05_A          180 ASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSK  259 (395)
T ss_dssp             HHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEEC
T ss_pred             HHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCCCceeeccc
Confidence            99999999888889999999999999999999999999998 22347999999999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHH
Q 022694          161 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK  240 (293)
Q Consensus       161 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~  240 (293)
                      +||||+|+++||||| ++|+|+|+|+|++|++|||++||||++.+.+++++.|+||++|++|+|+++|+.+++++++|++
T Consensus       260 ~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~  338 (395)
T 3i05_A          260 FFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKK  338 (395)
T ss_dssp             CCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC
T ss_pred             cccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHH
Confidence            999999987899999 7789999999999999999989999999888888999999999999999999767889999999


Q ss_pred             hccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCC
Q 022694          241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP  289 (293)
Q Consensus       241 ~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~  289 (293)
                      +|++|+++|++||+.|++.|+++|+|||+||++++++.|++++..+++.
T Consensus       339 ~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~  387 (395)
T 3i05_A          339 EYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMG  387 (395)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhccc
Confidence            9999999999999999999999999999999999999999999988763

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=100.00  E-value=3.3e-73  Score=540.42  Aligned_cols=287  Identities=53%  Similarity=0.926  Sum_probs=255.2

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhc-ccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhhee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV   80 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~-~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~   80 (293)
                      ++ +|||+++||+++|+|||+||++.+ ..+++++++++++++++|+|||+||+|++||.||+|++ .++..+++|+|++
T Consensus        98 ~~-~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~~~~l~r~~  175 (393)
T 3hv0_A           98 FT-KYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKI  175 (393)
T ss_dssp             HH-HHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH-HHHHHHHHHHHHS
T ss_pred             HH-HHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH-HHHHHHHHHHccC
Confidence            35 899998899999999999998876 49999999999999999999999999999999999985 5688899999999


Q ss_pred             eecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccc
Q 022694           81 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  160 (293)
Q Consensus        81 t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~  160 (293)
                      |++++++++|+.++.++|+|+||+|||||+++.+||.++..++|++|+||||.||++|+++|||+|+|||+++|.++++|
T Consensus       176 t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~  255 (393)
T 3hv0_A          176 SCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSI  255 (393)
T ss_dssp             BHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEEC
T ss_pred             CHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCceeeccC
Confidence            99999999988888999999999999999888888888877888889999999999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHH
Q 022694          161 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK  240 (293)
Q Consensus       161 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~  240 (293)
                      +||||+|+++|||||.+||+|+|+|+|++|++|||++|+||++.+.+++++.|+||++|++|+|+++|+.+++++++|++
T Consensus       256 ~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~  335 (393)
T 3hv0_A          256 FLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGK  335 (393)
T ss_dssp             CCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHH
T ss_pred             cccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHH
Confidence            99999998789999999889999999999999999999999998887777889999999999999998767889999999


Q ss_pred             hccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCC
Q 022694          241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN  290 (293)
Q Consensus       241 ~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~  290 (293)
                      +|++|+++|++||+.|++.|+++|+|+|+||++++++.|+++|..+++.+
T Consensus       336 ~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~  385 (393)
T 3hv0_A          336 KYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSREQL  385 (393)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCCCC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHHHH
Confidence            99999999999999999999999999999999999999999999998743

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=100.00  E-value=7.1e-72  Score=536.79  Aligned_cols=286  Identities=48%  Similarity=0.808  Sum_probs=268.8

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccc-hhhhhhHHhhhhe
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKC   79 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~   79 (293)
                      ++ +|||+++||+++|+|+|+||++.++ .+++++++|+++++++|+|||+||++++||.||+|++ .+++..+.+|+|+
T Consensus       115 ~l-~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~  193 (451)
T 3foc_A          115 FT-KYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRM  193 (451)
T ss_dssp             HH-HHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHT
T ss_pred             HH-HHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHHhh
Confidence            35 8999988999999999999999864 8999999999999999999999999999999999997 7899999999999


Q ss_pred             eeecceeeeccccCCccccccccCCcccCCCCCCCC----------------------------------CcccCCCCc-
Q 022694           80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLFSGKDH-  124 (293)
Q Consensus        80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~----------------------------------~Dil~~~ad-  124 (293)
                      +|+++++++.++.++.++|+|+||+|||||++++.|                                  .|||+++++ 
T Consensus       194 ~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  273 (451)
T 3foc_A          194 LPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHV  273 (451)
T ss_dssp             CCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHH
T ss_pred             CCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhccc
Confidence            999999999998888999999999999999987777                                  268888887 


Q ss_pred             -------------cceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeeccChHHHH
Q 022694          125 -------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK  191 (293)
Q Consensus       125 -------------~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~  191 (293)
                                   ++|+||||+||+||+++||++|+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|+
T Consensus       274 ~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~I~  353 (451)
T 3foc_A          274 VEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIK  353 (451)
T ss_dssp             HHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHHHH
T ss_pred             chhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHHHH
Confidence                         7899999999999999999999999999999999999999999877999999998999999999999


Q ss_pred             HHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 022694          192 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR  271 (293)
Q Consensus       192 ~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~  271 (293)
                      +|||++|+||++.+.++++++|+||++|++|.|+.+|+.+++++++|+++|++|+++|++||+.|++.|+++|+|||+||
T Consensus       354 kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~  433 (451)
T 3foc_A          354 NKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERR  433 (451)
T ss_dssp             HHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999789999988888889999999999999999997678899999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHhhhcccCC
Q 022694          272 AAVTDEMVDAFMAVRPL  288 (293)
Q Consensus       272 ~~~~~~~l~~il~~~~~  288 (293)
                      ++++++.|++++..+++
T Consensus       434 ~~l~~d~v~~f~~~~~~  450 (451)
T 3foc_A          434 DKVDTTMIESFTVKKEL  450 (451)
T ss_dssp             HTCCHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHhhCcccC
Confidence            99999999999998875

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.2e-72  Score=530.67  Aligned_cols=272  Identities=39%  Similarity=0.682  Sum_probs=238.5

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhhee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV   80 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~   80 (293)
                      ++ +|||+++||.++|+||||||+++++ .+++++++++++++++|+|||+||+|++||.||+|++  ++..+..|++++
T Consensus        96 ~~-~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~--~~~~~~~l~~~~  172 (392)
T 3jxe_A           96 AT-KWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKI  172 (392)
T ss_dssp             HH-HHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTSTH--HHHHHHHHHHHS
T ss_pred             HH-HHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhHH--HHHHHHHHHhhC
Confidence            35 8999977999999999999999866 8999999999999999999999999999999999986  888899999999


Q ss_pred             eecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCC-CccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           81 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        81 t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      |+++++++.++.++.++|+|+||+||||        |||.++ +   |+||||.||+||+++|||+|+|||+++|.++++
T Consensus       173 t~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~~a---~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~  241 (392)
T 3jxe_A          173 NFSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHS  241 (392)
T ss_dssp             BHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEE
T ss_pred             CHHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhcCC---ceeecccchHHHHHHHHHHHHHcCCCCCeeeec
Confidence            9999999988888899999999999999        899994 6   689999999999999999999999999999999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee-cChHHHHHH
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHI  238 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~eei  238 (293)
                      ++||||+|+++|||||++||+|+|+|+|++|++|||+||+||+..+.+++++.|+||++|++++|+.+|+ .+++++++|
T Consensus       242 ~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel  321 (392)
T 3jxe_A          242 KFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKER  321 (392)
T ss_dssp             CCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHH
T ss_pred             ccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHH
Confidence            9999999987899999999999999999999999999999999988888888899999999999999986 468899999


Q ss_pred             HHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694          239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  288 (293)
Q Consensus       239 ~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~  288 (293)
                      +++|++|+++|++||+.||++|+++|+|||+||++++ ++|++++..+++
T Consensus       322 ~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~  370 (392)
T 3jxe_A          322 YYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL  370 (392)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence            9999999999999999999999999999999999999 699999998875

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=100.00  E-value=2.5e-68  Score=512.25  Aligned_cols=287  Identities=62%  Similarity=1.063  Sum_probs=262.3

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch--hhhhhHHhhhheeee
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG--AFYKNMVKVAKCVTY   82 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~--~~~~~~~~l~r~~t~   82 (293)
                      +|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++.  +++..+++|+||+++
T Consensus       134 ~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~~l~~~~~l~~~v~rm~~~  213 (437)
T 1r6u_A          134 KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTF  213 (437)
T ss_dssp             HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGGGCTTHHHHHHHHHHTCBH
T ss_pred             HHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhhhhHHHHHHHHHHHHhhccH
Confidence            899997799999999999999986589999999999999999999999999999999999863  789999999999999


Q ss_pred             cceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccccc
Q 022694           83 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF  162 (293)
Q Consensus        83 ~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~l  162 (293)
                      +++++++++.++.++|+|+||+|||||++...++-.+..+...+|+||||.||++|++++|++|+|||+++|.++++|+|
T Consensus       214 ~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll  293 (437)
T 1r6u_A          214 NQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFF  293 (437)
T ss_dssp             HHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCC
T ss_pred             HHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccc
Confidence            99999988777889999999999999655444433333233444899999999999999999999999999999999999


Q ss_pred             ccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHhc
Q 022694          163 PALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY  242 (293)
Q Consensus       163 pgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~y  242 (293)
                      |||+|+++|||||.+||+|+|+|+|++|++||++|||||+..+.+++++.|+||++|+++.|+++|+.+++++++|+++|
T Consensus       294 ~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~  373 (437)
T 1r6u_A          294 PALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDY  373 (437)
T ss_dssp             EETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             cCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHH
Confidence            99999767999999988999999999999999999999998888888889999999999999999876789999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCCC
Q 022694          243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM  291 (293)
Q Consensus       243 ~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~~  291 (293)
                      .+|+++++++|+.||+.|+++|+|+|+||++++++.|++++..+++.+.
T Consensus       374 ~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~  422 (437)
T 1r6u_A          374 TSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFD  422 (437)
T ss_dssp             HHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSCC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc
Confidence            9998999999999999999999999999999999889999999988653

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=100.00  E-value=5e-68  Score=516.16  Aligned_cols=288  Identities=63%  Similarity=1.081  Sum_probs=263.1

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccc--hhhhhhHHhhhhe
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKC   79 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~--~~~~~~~~~l~r~   79 (293)
                      ++ +|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++  .+++..+++|+|+
T Consensus       179 ~~-~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~~l~~~~~~~~~l~r~  257 (477)
T 1r6t_A          179 FT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKH  257 (477)
T ss_dssp             HH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHT
T ss_pred             HH-HHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhhcccHHHHHHHHHHHhh
Confidence            35 89999779999999999999998558999999999999999999999999999999999986  3799999999999


Q ss_pred             eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      +|++++++++++.++.++|+|+||+|||||++..+++.++..+...+|+||||.||++|++++|++|+|||+++|.++++
T Consensus       258 ~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~  337 (477)
T 1r6t_A          258 VTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHS  337 (477)
T ss_dssp             CBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEE
T ss_pred             ccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCCCCceeeec
Confidence            99999999888777899999999999999665555544443233445899999999999999999999999999999999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHH
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK  239 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~  239 (293)
                      |+||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.+++++.|+||++|+++.|+++|+.+++++++|+
T Consensus       338 pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~  417 (477)
T 1r6t_A          338 TFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR  417 (477)
T ss_dssp             CCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHH
T ss_pred             ccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999767999999988999999999999999999999998888888889999999999999999877789999999


Q ss_pred             HhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCC
Q 022694          240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN  290 (293)
Q Consensus       240 ~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~  290 (293)
                      ++|.+|+++++++|+.||+.|+++|+|||+||+++.++.|++++..+++.+
T Consensus       418 ~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~  468 (477)
T 1r6t_A          418 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAA  468 (477)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC-
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            999999899999999999999999999999999999988999999998754

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=100.00  E-value=1.7e-67  Score=506.86  Aligned_cols=284  Identities=53%  Similarity=0.912  Sum_probs=253.5

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhhee
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV   80 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~   80 (293)
                      ++ +|||+.+||.++|+|||+||+++++ .+++.+++++++++++|+|||+||+|++||.||+|++.+++..+.+++||+
T Consensus       126 ~l-~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v~rm~  204 (432)
T 2ip1_A          126 FT-KWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQI  204 (432)
T ss_dssp             HH-HHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHHHTSC
T ss_pred             HH-HHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHHHhhh
Confidence            35 8999967999999999999999865 899999999999999999999999999999999998778888899999999


Q ss_pred             eecceeeeccccCCccccccccCCcccCCCCCCCCCcccC---CCCccceeccccccCCcccccccccCCccCCCCcccc
Q 022694           81 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS---GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI  157 (293)
Q Consensus        81 t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~---~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l  157 (293)
                      +++++++++|+.++.++|+|+||+|||||++..+++.++.   +++   |+||||.||++|++++|++|+|||+++|.++
T Consensus       205 ~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~---~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l  281 (432)
T 2ip1_A          205 TGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTP---CLIPCAIDQDPYFRVCRDVADKLKYSKPALL  281 (432)
T ss_dssp             CHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCC---EEEEEEGGGHHHHHHHHHHHHHHTSCCCEEE
T ss_pred             cHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCc---eEEEeccCcHHHHHHHHHHHHHhCCCCceee
Confidence            9999999888777889999999999999777666654443   445   7999999999999999999999999999999


Q ss_pred             cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHH
Q 022694          158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEH  237 (293)
Q Consensus       158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ee  237 (293)
                      ++|+||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.+++++.|+||++|+++.|+++|+.+++++++
T Consensus       282 ~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eiee  361 (432)
T 2ip1_A          282 HSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKE  361 (432)
T ss_dssp             EECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHH
T ss_pred             ccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHH
Confidence            99999999998789999999889999999999999999999999988888888899999999999999998767899999


Q ss_pred             HHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCC
Q 022694          238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP  289 (293)
Q Consensus       238 i~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~  289 (293)
                      |+++|.+|+++|+++|+.||+.|+++|+|+|+||++++++.++++...+++.
T Consensus       362 l~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~  413 (432)
T 2ip1_A          362 CYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLV  413 (432)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence            9999999989999999999999999999999999999997788887777653

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=3.5e-67  Score=491.03  Aligned_cols=262  Identities=18%  Similarity=0.248  Sum_probs=232.8

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      +|  ||+.  +.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+++
T Consensus        30 ~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~qS~v~~~~el~~~l~~~~~~~~  106 (341)
T 3sz3_A           30 QWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGE  106 (341)
T ss_dssp             GHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEEEeccchhhhHHHHHHHHhhccHHH
Confidence            67  9994  678888999999998 589999999999999999999999999999999999976    2222   4799


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY----  151 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~----  151 (293)
                      |+|+++++++..+++  ++.++|+|+||+||||        |||.+++|   +||||.||+||+++|||+|+|||+    
T Consensus       107 l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~ad---~vpvG~DQ~~hlel~Rdia~rfn~~yg~  173 (341)
T 3sz3_A          107 LSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGAH---QVPVGSDQKQHLELARDIATRFNNIYSP  173 (341)
T ss_dssp             HHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCCC---EEEeccchHHHHHHHHHHHHHhchhccC
Confidence            999999999887653  5789999999999999        89999995   799999999999999999999983    


Q ss_pred             -----CCccccc---ccccccccCCccccccCCC--CceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeec
Q 022694          152 -----HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP  221 (293)
Q Consensus       152 -----~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~  221 (293)
                           +.|..+.   +++||||+++++|||||+|  +|+|+|+|+|++|++|||+ |+||+..+.+++++.+++|+++++
T Consensus       174 ~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~~l  252 (341)
T 3sz3_A          174 EQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK-AQTDAETPPRIAYDVENKAGIANL  252 (341)
T ss_dssp             SSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHH
T ss_pred             CCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-ccCCCCCCcccccCCCCCcchhHH
Confidence                 2454433   5899999765689999998  6899999999999999999 999998754555677999999999


Q ss_pred             ceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          222 VKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       222 ~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                      +.|+++|  +++++++++++|+ |+++|++||+.|++.|+++|+|||+||+++.++  +|++||+++
T Consensus       253 ~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G  316 (341)
T 3sz3_A          253 MGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDG  316 (341)
T ss_dssp             HHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999998  5678999999999 668999999999999999999999999999876  999999876

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=100.00  E-value=4.5e-65  Score=482.53  Aligned_cols=271  Identities=26%  Similarity=0.369  Sum_probs=240.6

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheeeec
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYN   83 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~~   83 (293)
                      +|+|+. |+.++|+||||||+|++. .+++.++.++++++++|+||||||+|++||.||++. ..++..+..+++.++++
T Consensus        95 ~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~-~~~~~l~~~~~~~~~~~  172 (372)
T 3a04_A           95 IYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG-TPYFRLIQLFSGKVTAA  172 (372)
T ss_dssp             HHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC-HHHHHHHHHHTTSSCHH
T ss_pred             HHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch-HHHHHHHHHHHhhhhHH
Confidence            679985 999999999999999865 466779999999999999999999999999999864 45667788899999999


Q ss_pred             ceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC----CCCcccccc
Q 022694           84 KVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIES  159 (293)
Q Consensus        84 ~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n----~~~p~~l~~  159 (293)
                      ++++.++   ..+.|.++||+|||||++...++.+++|++   |+||||+||+||+|+|||+|+|||    .++|..+++
T Consensus       173 ~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~  246 (372)
T 3a04_A          173 EMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYH  246 (372)
T ss_dssp             HHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEE
T ss_pred             HHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHHHHHHhcCcccccChhhhhh
Confidence            9887754   467899999999999666555555555666   799999999999999999999998    478999999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee-eecChHHHHHH
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-FLEDDAELEHI  238 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~eei  238 (293)
                      +++|||+|  .|||||++||+|+|+|+|++|++|||+ |+||++.+.+++++.||+|++|++|.++.+ +..++++++++
T Consensus       247 ~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei  323 (372)
T 3a04_A          247 KLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHI  323 (372)
T ss_dssp             CCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHH
T ss_pred             cccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHH
Confidence            99999998  699999999999999999999999999 999999999999999999999999986433 34578899999


Q ss_pred             HHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccC
Q 022694          239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP  287 (293)
Q Consensus       239 ~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~  287 (293)
                      +++|++|+++||+||+.|++.|+++|+|+|+||++..+ +++++++...
T Consensus       324 ~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~~r  371 (372)
T 3a04_A          324 YTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEPPR  371 (372)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCCCC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcccC
Confidence            99999999999999999999999999999999998766 8999988653

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=100.00  E-value=3.9e-66  Score=484.14  Aligned_cols=262  Identities=17%  Similarity=0.256  Sum_probs=230.6

Q ss_pred             hHH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHH
Q 022694            4 NRY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV   74 (293)
Q Consensus         4 ~k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~   74 (293)
                      .+|  ||+  ++.++|+||||||+|+ ..+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .++
T Consensus        38 ~~~~~lQ~--~~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~v~~~~el~~~l~~~~~~~  114 (346)
T 3n9i_A           38 RQWVQMQD--DYDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFG  114 (346)
T ss_dssp             HHHHTTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHHHHTTSBHH
T ss_pred             HHHHHHHh--hCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccccccchHHHHHHHHHhhHH
Confidence            378  898  5778899999999997 589999999999999999999999999999999999976    2222   478


Q ss_pred             hhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC---
Q 022694           75 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---  151 (293)
Q Consensus        75 ~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~---  151 (293)
                      +|+|+++++++..+.  .++.++|+|+||+||||        |||.+++|   +||||.||+||+++|||+|+|||+   
T Consensus       115 ~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~ad---~vpvG~DQ~~hleltRdia~rfn~~yg  181 (346)
T 3n9i_A          115 ELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQTN---QVPVGEDQKQHLELSRDIASRFNNLYG  181 (346)
T ss_dssp             HHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCce---EEEeccchHHHHHHHHHHHHHhccccC
Confidence            999999999887654  25689999999999999        89999995   899999999999999999999993   


Q ss_pred             ---CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecce
Q 022694          152 ---HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  223 (293)
Q Consensus       152 ---~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~  223 (293)
                         +.|..+.   +++||||+++++|||||++|  |+|+|+|+|++|++||++ |+||+..+.+++++.+++|++++++.
T Consensus       182 ~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~~  260 (346)
T 3n9i_A          182 DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLLD  260 (346)
T ss_dssp             SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHH
T ss_pred             CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHHH
Confidence               4565544   38999996556899999986  899999999999999999 99999864334466789999999999


Q ss_pred             eeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          224 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       224 ~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                      |+..|  +++++++++++|.+|  ++++||+.|+++|+++|+|||+||+++.+|  +|++||+++
T Consensus       261 ~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G  321 (346)
T 3n9i_A          261 ILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG  321 (346)
T ss_dssp             HHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            99888  567899999999865  699999999999999999999999999876  999999876

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=100.00  E-value=2.2e-65  Score=484.90  Aligned_cols=258  Identities=20%  Similarity=0.232  Sum_probs=220.5

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVA   77 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~   77 (293)
                      +|||+  |+.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+++|+
T Consensus        61 ~~LQ~--~~~~~~~IaD~hAlt~-~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~~el~w~l~~~~~~~~L~  137 (388)
T 3prh_A           61 VELQH--DYNSYFCIVDQHAITV-PQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELE  137 (388)
T ss_dssp             HHTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecccccchHHHHHHHHhhccHHHHH
Confidence            34898  7788899999999998 689999999999999999999999999999999999986    2232   489999


Q ss_pred             heeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC------
Q 022694           78 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------  151 (293)
Q Consensus        78 r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~------  151 (293)
                      |+++|+++.+..   ++.++|+|+||+||||        |||.|++|   +||||.||+||+|+|||+|+|||+      
T Consensus       138 R~~~fk~k~~~~---~~~~~g~~~YPvLQAA--------DIl~~~ad---~vPvG~DQ~~hleltRdia~rfn~~y~~~f  203 (388)
T 3prh_A          138 RMTQFKDKSKGN---EAVVSGLLTYPPLMAA--------DILLYGTD---LVPPGEDQKQHLELTRNLAERFNKKYNDIF  203 (388)
T ss_dssp             TTC-------------CCBHHHHSCHHHHHH--------HHHTTTCC---EECCCSSCHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             hhhhHhHHhhcc---CCCcchhHhhHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHHHHHhCcccCCCc
Confidence            999999887642   6789999999999999        89999995   799999999999999999999995      


Q ss_pred             CCccccc---ccccccccCCccccccCCC--CceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeee
Q 022694          152 HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS  226 (293)
Q Consensus       152 ~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~  226 (293)
                      +.|..+.   +++||||+|+++|||||+|  +|+|+|+|+|++|++|||+ |+||+....+  ++++++|++++++.|++
T Consensus       204 ~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~--~~~~~~p~v~~l~~i~~  280 (388)
T 3prh_A          204 TIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVK--FDKENKPGVSNLLTIYS  280 (388)
T ss_dssp             CCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCC--CCTTTCHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh-ccCCCCCccc--CCCCCCCCcchHHHHHH
Confidence            2243332   4789999887789999997  6899999999999999999 9999865432  34689999999999999


Q ss_pred             eeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhccc
Q 022694          227 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  286 (293)
Q Consensus       227 ~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~il~~~  286 (293)
                      ++  +++++++|+++|. |. +|++||+.|+++|+++|+|||+||+++.++ +|++||+++
T Consensus       281 ~~--~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~G  337 (388)
T 3prh_A          281 IL--GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEG  337 (388)
T ss_dssp             HH--HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             hc--CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            88  5678999999999 76 999999999999999999999999999876 999999875

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=100.00  E-value=5.4e-64  Score=467.05  Aligned_cols=255  Identities=17%  Similarity=0.207  Sum_probs=228.0

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVA   77 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~   77 (293)
                      +|||+  |+.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+.+|.
T Consensus        29 ~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~~~~l~  105 (322)
T 3tzl_A           29 VDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE  105 (322)
T ss_dssp             HHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHGGGCBHHHHH
T ss_pred             HHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchhHHHHHHHHhccCcHHHHH
Confidence            45999  88899999999999985 79999999999999999999999999999999999976    2222   478888


Q ss_pred             heeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC------
Q 022694           78 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------  151 (293)
Q Consensus        78 r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~------  151 (293)
                      |++++|+....   .++.++|+|+||+||||        |||.|+++   +||||.||+||+++|||+|+|||+      
T Consensus       106 r~~~~K~~~~~---~~~~~~g~f~YP~LQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f  171 (322)
T 3tzl_A          106 RAHSYKDKVAK---GLSASHGLFSYPVLMAA--------DILLFDTR---IVPVGKDQIQHVEIARDIALKVNNEWGEIF  171 (322)
T ss_dssp             SCHHHHHHHHT---TCCCBHHHHHHHHHHHH--------HHHHTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHCSCS
T ss_pred             hhhHHHHHHcc---CCCCchHHHHHHHHHHH--------HHHHhCCc---EEEeccchHHHHHHHHHHHHHhcccccCCC
Confidence            99888775433   35789999999999999        89999995   899999999999999999999986      


Q ss_pred             CCccccc---ccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeee
Q 022694          152 HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF  228 (293)
Q Consensus       152 ~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~  228 (293)
                      ++|..++   +|+||||+|  +|||||++| +|+|+|+|++|++||++ |+|||..+.     ..+||++++++.|+++|
T Consensus       172 ~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~~~~~-----~~~~~~~~~v~~~~~~~  242 (322)
T 3tzl_A          172 TLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDSTALE-----DPKDHENCNIFKIAKLF  242 (322)
T ss_dssp             CCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCCCCTT-----SCCCGGGCHHHHHHGGG
T ss_pred             CCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCCcccc-----CCCCCcchhHHHHHHHh
Confidence            5665443   799999999  799999997 89999999999999999 999998652     35789999999999999


Q ss_pred             ecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          229 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       229 ~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                      + +++++++++++|++|+++|+++|+.||+.|+++|+|||+||+++.+|  +|++||+++
T Consensus       243 ~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G  301 (322)
T 3tzl_A          243 L-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFG  301 (322)
T ss_dssp             C-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             C-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            6 57899999999999889999999999999999999999999999986  999999876

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=100.00  E-value=1.8e-63  Score=467.96  Aligned_cols=260  Identities=18%  Similarity=0.233  Sum_probs=228.4

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      +|  ||+  |+.++|+||||||+|++ .+++++++++++++++|+||||||+|++||.||+|++|    |.+.   .+.+
T Consensus        28 ~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~w~l~~~~~~~~  104 (348)
T 2yy5_A           28 SLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGE  104 (348)
T ss_dssp             GHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCHHHHHHHHHHHHHSBHHH
T ss_pred             HHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCcccchhHHHHHHHhhccHHH
Confidence            67  998  67889999999999985 89999999999999999999999999999999999876    2222   4899


Q ss_pred             hhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-
Q 022694           76 VAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG-  150 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n-  150 (293)
                      |+|++++++..++.++    .++.++|+|+||+||||        |||.|++|   +||||.||+||++++|++|+||| 
T Consensus       105 l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a~---~vpvG~DQ~~~lel~Rdia~r~n~  173 (348)
T 2yy5_A          105 LQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQPD---IVPVGNDQKQHLELTRDLAQRIQK  173 (348)
T ss_dssp             HHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCCS---EEECCGGGHHHHHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCcc---EEEecccHHHHHHHHHHHHHHhhh
Confidence            9999999988765432    45789999999999999        89999995   79999999999999999999998 


Q ss_pred             -----CCCccccc---ccccccccCCccccccCCCCc--eeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694          151 -----YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  220 (293)
Q Consensus       151 -----~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s--~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~  220 (293)
                           +++|..++   +++||||+||++|||||++|+  +|+|+|+|++|++|||+ |+||+..+.+  ++++++|++++
T Consensus       174 ~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~  250 (348)
T 2yy5_A          174 KFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIR--FASKTQPGVTN  250 (348)
T ss_dssp             HHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHT-CCCCSSCCCS--CCTTTCHHHHH
T ss_pred             hcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHh-CCCCCccccc--cCCCCCCchhh
Confidence                 56787776   599999999888999999985  99999999999999999 9999965432  34577899999


Q ss_pred             cceeeeeeecChHHHH---------HHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhccc
Q 022694          221 PVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  286 (293)
Q Consensus       221 ~~~~l~~~~~~~~~~e---------ei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~il~~~  286 (293)
                      ++.|+++|  ++++++         +|+++|. | ++|+++|+.||+.|+++|+|||+||+++ +| .|+++|.++
T Consensus       251 ~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~-~d~~~~~~l~~G  321 (348)
T 2yy5_A          251 MLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQI-SREQVFNCLQAG  321 (348)
T ss_dssp             HHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHH
T ss_pred             HHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence            99999998  667899         9999999 7 8999999999999999999999999999 54 699999875

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=100.00  E-value=4.7e-63  Score=463.87  Aligned_cols=262  Identities=20%  Similarity=0.246  Sum_probs=229.0

Q ss_pred             HHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhh
Q 022694            6 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK   78 (293)
Q Consensus         6 ~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r   78 (293)
                      |||++ |+.++++||||||+|+++.+++.+++++++++++|+|||+||+|++||.||+|+++    |.+.   ++.+|.|
T Consensus        39 ~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~~~l~~~~~v~~l~r  117 (340)
T 2g36_A           39 KLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLER  117 (340)
T ss_dssp             HHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHHHHT
T ss_pred             HHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCchHHHHHHHHHHHccCCHHHHHH
Confidence            39995 99999999999999985688999999999999999999999999999999999876    2222   4889999


Q ss_pred             eeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC------C
Q 022694           79 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------H  152 (293)
Q Consensus        79 ~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~------~  152 (293)
                      ++++++...+.+..++.++|+|+||+||||        |||.|+++   +||||.||+||+++|||+|+|||+      +
T Consensus       118 ~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~  186 (340)
T 2g36_A          118 VPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKAE---GVPVGEDQVYHIELTREIARRFNYLYDEVFP  186 (340)
T ss_dssp             CHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTCS---EEEECGGGHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             hHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCCC---EEEcccchHHHHHHHHHHHHHhhhhcccccC
Confidence            999988333333345689999999999999        89999995   899999999999999999999973      5


Q ss_pred             Ccccc--cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeec
Q 022694          153 KPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE  230 (293)
Q Consensus       153 ~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~  230 (293)
                      +|..+  ++|+||||+|  .|||||++| +|+|+|||++|++||++ |+||+..   +++..|++|++|+++.|+++|+.
T Consensus       187 ~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~td~~~---~~~~~~~~p~~~~v~~~~~~f~~  259 (340)
T 2g36_A          187 EPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MMTDPAR---VRRSDPGNPENCPVWKYHQAFDI  259 (340)
T ss_dssp             CCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CCCCTTC---SSTTSCCCGGGCHHHHHHHHTTC
T ss_pred             CchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CCCCccc---ccccCCCCCchhHHHHHHHHHCC
Confidence            67643  4799999998  499999986 89999999999999999 9999865   23556799999999999999975


Q ss_pred             ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          231 DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       231 ~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                      +.+++++|+++|.+|++++++||+.||+.|+++|+|||+||+++.++  +|+++|.++
T Consensus       260 ~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g  317 (340)
T 2g36_A          260 SEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEG  317 (340)
T ss_dssp             CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             CHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            56778999999999989999999999999999999999999999987  999999865

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=100.00  E-value=3.3e-63  Score=463.04  Aligned_cols=258  Identities=21%  Similarity=0.278  Sum_probs=229.9

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      +|  ||+  |+.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+++
T Consensus        25 ~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS~~~~~~~l~w~l~~~~~~~~  101 (328)
T 1i6k_A           25 QFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGE  101 (328)
T ss_dssp             HHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCTHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecCchhhhhHHHHHHhccccHHH
Confidence            66  588  7888999999999998 699999999999999999999999999999999999875    3333   4789


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-----
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG-----  150 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n-----  150 (293)
                      |+|++++++..++ +  ++.++|+|+||+||||        |||.|+++   +||||.||+||++++||+|+|||     
T Consensus       102 l~r~~~~k~~~~~-~--~~~~~g~f~YPvLQaa--------Dil~~~~~---~vpvG~DQ~~~iel~Rdia~r~n~~yg~  167 (328)
T 1i6k_A          102 LERMTQFKEKSAG-K--EAVSAGLLTYPPLMAA--------DILLYNTD---IVPVGEDQKQHIELTRDLAERFNKRYGE  167 (328)
T ss_dssp             HHTCHHHHHHHTT-C--SSCCHHHHTHHHHHHH--------HHHTTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhc-c--CCCCchhhccHHHHHH--------HHHHhCCC---EEecccchHHHHHHHHHHHHHhCccccc
Confidence            9999999987654 2  5789999999999999        89999995   79999999999999999999999     


Q ss_pred             -CCCccccc---ccccccccCCccccccCCCCce--eeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694          151 -YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  224 (293)
Q Consensus       151 -~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  224 (293)
                       +++|..+.   +++||||+|+++|||||++|++  |+|+|+|++|++|||+ |+|||..+..  ++++++|++++++.|
T Consensus       168 ~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~~~~~  244 (328)
T 1i6k_A          168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLLNI  244 (328)
T ss_dssp             CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CBTTTBHHHHHHHHH
T ss_pred             ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCCCCccccc--cCCCCCcchhhHHHH
Confidence             45776654   6999999998889999999866  9999999999999999 9999865332  344678999999999


Q ss_pred             eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhccc
Q 022694          225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  286 (293)
Q Consensus       225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~il~~~  286 (293)
                      +++|  +++++++|+++|. | ++|+++|+.||+.|+++|+|||+||+++.++ .|+++|.++
T Consensus       245 ~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g  303 (328)
T 1i6k_A          245 YSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG  303 (328)
T ss_dssp             HHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred             HHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHH
Confidence            9998  5678999999999 7 8999999999999999999999999999886 699998865

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-61  Score=453.81  Aligned_cols=260  Identities=20%  Similarity=0.223  Sum_probs=222.5

Q ss_pred             HH--HHhhcC-CcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hH
Q 022694            5 RY--LQDAFK-VPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NM   73 (293)
Q Consensus         5 k~--lQ~~~g-~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~   73 (293)
                      +|  ||++ | +.++|+||||||+++++ .+++.+++++++++++|+|||+||+|++||.||+|+++    |.+.   ++
T Consensus        25 ~~~~lQ~~-G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~~  103 (337)
T 2el7_A           25 QWVAIGEK-LGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPL  103 (337)
T ss_dssp             HHHHHHHH-HGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTHHHHHHHHHHHTSBH
T ss_pred             HHHHHHhc-CCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchhhHHHHHHHHccCCH
Confidence            56  7995 8 89999999999999853 79999999999999999999999999999999999976    2232   46


Q ss_pred             HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC---
Q 022694           74 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---  150 (293)
Q Consensus        74 ~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n---  150 (293)
                      .+|.|++++++..+.   .++.++|+|+||+||||        ||+.|+++   +||||.||+||++++||+|+|||   
T Consensus       104 ~~l~r~~~~k~r~~~---~~~~~~g~f~YPvLQaa--------Dil~~~~~---lvp~G~DQ~~~i~l~rdla~r~n~~~  169 (337)
T 2el7_A          104 GDLTRMTQFKDKASK---QETVWSGLLMYPVLQAA--------DILIYKAD---TVPVGEDQVQHIELTREIARRFNHLF  169 (337)
T ss_dssp             HHHHTSHHHHHHTTS---SSCCBHHHHHHHHHHHH--------HHHHTTCC---EEECCGGGCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHhcc---CCCCChHHHHhHHHHHh--------hHHhhCCc---EEEcccchHHHHHHHHHHHHHHHhhc
Confidence            899999999886542   46789999999999999        89999995   89999999999999999999986   


Q ss_pred             ---CCCcccccc---cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694          151 ---YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  224 (293)
Q Consensus       151 ---~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  224 (293)
                         +++|..+++   |+||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..+.+   ..+++|++++++.|
T Consensus       170 g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~~~~---~~~~~p~~~~v~~~  243 (337)
T 2el7_A          170 GETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQRIRL---SDPGDPERTILFTY  243 (337)
T ss_dssp             SSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC----------------CHHHHH
T ss_pred             CcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCccccc---cCCCCCchhhHHHH
Confidence               477877664   89999999 6899999998 99999999999999999 9999976543   35678999999999


Q ss_pred             eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                      +++|+. .+++++|+++|.+|+++++++|+.||+.|+++|+|+|++|+++.+|  +|+++|.++
T Consensus       244 ~~~~t~-~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G  306 (337)
T 2el7_A          244 LSYFAP-KDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEG  306 (337)
T ss_dssp             HHHHSC-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHcCC-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHH
Confidence            999943 3599999999999889999999999999999999999999999987  999999765

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=100.00  E-value=3.3e-62  Score=459.95  Aligned_cols=263  Identities=24%  Similarity=0.284  Sum_probs=235.6

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      +|  ||++  +.++|+||||||+++++.+++++++++++++++|+|||+||+|++||.||+|++|    |.+.   .+.+
T Consensus        46 ~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~v~~  123 (351)
T 1yi8_B           46 NRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSH  123 (351)
T ss_dssp             HHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEEEGGGCTHHHHHHHHHHTTSBHHH
T ss_pred             HHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEEcCchhhHHHHHHHHhccCCHHH
Confidence            78  9995  6678888999999986699999999999999999999999999999999999976    2222   4899


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-----
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG-----  150 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n-----  150 (293)
                      |.|++|+++..++.|+.++.++|+|+||+||||        ||+.|+++   +||||.||+||++++||+|+|||     
T Consensus       124 l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~yg~  192 (351)
T 1yi8_B          124 LRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGAT---LVPVGDDQLPMLEQTREIVRRFNALYAP  192 (351)
T ss_dssp             HHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTCS---EEEECGGGHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCCC---EEEecCCcHHHHHHHHHHHHHHHhhccc
Confidence            999999999887666667789999999999999        89999995   89999999999999999999987     


Q ss_pred             -CCCcccc--cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694          151 -YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  227 (293)
Q Consensus       151 -~~~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~  227 (293)
                       +++|..+  ++|+||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..   +++..|+||+.++++.|+.+
T Consensus       193 ~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~---~~~~~~~~~~~~~~~~~l~~  266 (351)
T 1yi8_B          193 VLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MYTDPGH---LRASDPGRVEGNPVFTFLDA  266 (351)
T ss_dssp             CSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CCCCTTC---CSTTSCCCCTTCTTHHHHHH
T ss_pred             ccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cCCCccc---ccccCCCCCccchHHHHHHH
Confidence             3677654  3799999998 4699999998 99999999999999999 9999863   23567889999999999999


Q ss_pred             eecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       228 ~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                      |+.+.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|+||+++.++  +|+++|.++
T Consensus       267 ~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G  327 (351)
T 1yi8_B          267 FDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEG  327 (351)
T ss_dssp             HCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Confidence            87667788999999999999999999999999999999999999999886  899999865

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=100.00  E-value=2.7e-60  Score=449.69  Aligned_cols=257  Identities=17%  Similarity=0.263  Sum_probs=222.8

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeeccccc-ch--hhhhhHHhhhhe
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKC   79 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~-~~--~~~~~~~~l~r~   79 (293)
                      +|||++ ||.++|+||||||+++++  .++++++++++++++.|+|||+||+|++||.||+|+ +|  .+|..+.+++++
T Consensus        82 ~~lQ~~-G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~  160 (373)
T 3vgj_A           82 NKLTSN-GCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRS  160 (373)
T ss_dssp             HHHHTT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTT
T ss_pred             HHHHHC-CCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHcc
Confidence            569995 999999999999999864  799999999999999999999999999999999998 54  577777788888


Q ss_pred             eeecceeeec---ccc--CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-C
Q 022694           80 VTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-K  153 (293)
Q Consensus        80 ~t~~~~~~~~---g~~--~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-~  153 (293)
                      +|++++.++.   ++.  ++.++|+|+||+||||        ||+.+++|   +||||.||++|+++|||+|+|||+. +
T Consensus       161 ~tv~rm~~~~~~~~r~~~~~~~~g~f~YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~~  229 (373)
T 3vgj_A          161 FNINRMKRCLKIMGRSEGEENYCSQILYPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKKK  229 (373)
T ss_dssp             SBHHHHHTTGGGGTCCTTSCCBTHHHHHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSCC
T ss_pred             CcHHHHHhhhHHHhhhccCCCChHHHHHHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCCC
Confidence            8888887653   222  4689999999999999        89999996   7999999999999999999999986 6


Q ss_pred             cccccccccccc-cCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee----ecceeeeee
Q 022694          154 PALIESSFFPAL-QGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFF  228 (293)
Q Consensus       154 p~~l~~~~lpgL-~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~  228 (293)
                      |.++++|+|||| +| ++|||||+|+|+|+|+|+|++|++|||+ |||||+.       .++||.++    ++|+++..|
T Consensus       230 ~~~l~~p~l~gL~dG-~~KMSKS~~~~~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f  300 (373)
T 3vgj_A          230 PVILSHGMLPGLLEG-QEKMSKSDENSAIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEF  300 (373)
T ss_dssp             CEEEEBCCCCCSSTT-CCSCCSSSTTCCCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSE
T ss_pred             ceEEeCCeeecCCCC-CCCCcCCCCCCeeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhh
Confidence            888899999999 65 4799999988899999999999999999 9999864       25788775    356666555


Q ss_pred             ec----------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhh
Q 022694          229 LE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAF  282 (293)
Q Consensus       229 ~~----------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~i  282 (293)
                      ..          +++++++|+++|.+|++||++||++||++|+++|+|||++|++..+.  +|+++
T Consensus       301 ~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v  366 (373)
T 3vgj_A          301 NLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEI  366 (373)
T ss_dssp             EECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            21          24689999999999999999999999999999999999999987654  56554

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=100.00  E-value=1.5e-58  Score=437.19  Aligned_cols=246  Identities=22%  Similarity=0.319  Sum_probs=213.7

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheee
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT   81 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t   81 (293)
                      +|||++ |+.++|+||||||+++++  .+++++++++++++++|+|||+||+|++||.||+|+++ .+|..+.++++.+|
T Consensus        60 ~~lQ~~-G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t  138 (364)
T 2cya_A           60 KDLVEA-GVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRAS  138 (364)
T ss_dssp             HHHHHT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHC-CCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCc
Confidence            569995 999999999999999874  89999999999999999999999999999999999876 57777777888887


Q ss_pred             ecceeeec---cc---cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcc
Q 022694           82 YNKVVGIF---GF---TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA  155 (293)
Q Consensus        82 ~~~~~~~~---g~---~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~  155 (293)
                      ++++.++.   ++   ..+.++|+|+||+||||        ||+.|++|   +||||.||++|+++||++|+|||+++|.
T Consensus       139 ~~~l~r~~~~k~r~~~~~~i~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~p~  207 (364)
T 2cya_A          139 LARVRRALTIMGRRAEEAEVDASKLIYPLMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKKPV  207 (364)
T ss_dssp             HHHHHTTC------CCGGGSCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCCCE
T ss_pred             HHHHHcCchhhhhhcCCCCccchhhhhHHHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCCce
Confidence            77776542   22   22467999999999999        89999996   7999999999999999999999999999


Q ss_pred             cccccccccccC---------------CccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694          156 LIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  220 (293)
Q Consensus       156 ~l~~~~lpgL~g---------------~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~  220 (293)
                      ++++|+||||+|               |++|||||+++++|+|+|+|++|++||++ |+||++.+           +.+.
T Consensus       208 ~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~~-----------~~~~  275 (364)
T 2cya_A          208 AIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQV-----------QGNP  275 (364)
T ss_dssp             EEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTCC-----------TTCH
T ss_pred             eeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCCC-----------CCCc
Confidence            999999999997               56899999888899999999999999999 99998643           2233


Q ss_pred             cceeeeeeec-------------------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694          221 PVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  274 (293)
Q Consensus       221 ~~~~l~~~~~-------------------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~  274 (293)
                      ++.|+++|+.                   +.+++++|+++|.+|+++|+++|++||+.|+++|+|+|++|++.
T Consensus       276 v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~  348 (364)
T 2cya_A          276 VLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGD  348 (364)
T ss_dssp             HHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5566665431                   23589999999999999999999999999999999999999953

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.3e-58  Score=439.02  Aligned_cols=254  Identities=21%  Similarity=0.323  Sum_probs=218.1

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHH-Hhcc----cchhhcccCCCceeEeecccccch-hhhhhHHhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKV   76 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~-~~~~----~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l   76 (293)
                      +|||++ |+.++|+||||||+++++  .+++++++++ ++++    ++|+|||+||+|++||.||+|++| .+|..+..+
T Consensus        59 ~~lQ~~-G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~  137 (375)
T 2cyc_A           59 ADFQKA-GIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDI  137 (375)
T ss_dssp             HHHHHT-TCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHH
T ss_pred             HHHHHC-CCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHH
Confidence            569995 999999999999999874  6999999999 8888    899999999999999999999987 478888888


Q ss_pred             hheeeecceeeec---cc--cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC
Q 022694           77 AKCVTYNKVVGIF---GF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY  151 (293)
Q Consensus        77 ~r~~t~~~~~~~~---g~--~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~  151 (293)
                      +++++++++.++.   ++  .++.++|+|+||+||||        ||+.|++|   +||||.||+||+++|||+|+|||+
T Consensus       138 ~~~~~~~~m~~~~~~k~r~~~~~i~~g~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r~n~  206 (375)
T 2cyc_A          138 SKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQKLRY  206 (375)
T ss_dssp             HTTSBHHHHHHTGGGGTCCCCTTCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGCSS
T ss_pred             hceeEHHHHhccchhhhhccCCCCChHHHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHHhCC
Confidence            8888888887654   22  23478999999999999        89999996   799999999999999999999998


Q ss_pred             --------C-CcccccccccccccCC----------------ccccccCCCCceeeeccChHHHHHHhhhcccCCCchhH
Q 022694          152 --------H-KPALIESSFFPALQGE----------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV  206 (293)
Q Consensus       152 --------~-~p~~l~~~~lpgL~g~----------------~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~  206 (293)
                              . +|.++++|+||||+||                ++|||||.|+++|+|+|+|++|++||++ |+|||..+ 
T Consensus       207 ~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~~~-  284 (375)
T 2cyc_A          207 HPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREV-  284 (375)
T ss_dssp             SCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTTCC-
T ss_pred             cccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCCCC-
Confidence                    4 7888889999999997                4799999988899999999999999999 99987532 


Q ss_pred             HHHHHcCCCeeeeecceeeeeeec-------------------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHH
Q 022694          207 ELHRKLGANLEVDIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH  267 (293)
Q Consensus       207 ~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pi  267 (293)
                                +.+.++.|+++|+.                   +.+++++|+++|.+|+++|+++|++||+.|+++|+|+
T Consensus       285 ----------~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pi  354 (375)
T 2cyc_A          285 ----------RYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPI  354 (375)
T ss_dssp             ----------SSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHH
T ss_pred             ----------CCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence                      23444455554421                   2568999999999998999999999999999999999


Q ss_pred             HHHHHhhhH--HHHHhh
Q 022694          268 QVARAAVTD--EMVDAF  282 (293)
Q Consensus       268 r~~~~~~~~--~~l~~i  282 (293)
                      |+++++..+  +.++++
T Consensus       355 r~~~~~~~~~~~~~~~~  371 (375)
T 2cyc_A          355 RRYFEKHPEPLELMRSV  371 (375)
T ss_dssp             HHHHHHCCHHHHHHHHC
T ss_pred             HHHHHhChhHHHHHHhc
Confidence            999996532  255544

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=9.7e-58  Score=429.23  Aligned_cols=254  Identities=18%  Similarity=0.268  Sum_probs=203.9

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch-hhhhhHHhhhhee
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG-AFYKNMVKVAKCV   80 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~-~~~~~~~~l~r~~   80 (293)
                      +|||++ |+.++++||||||+++++  .+++++++++++++++|+|||+||+|++||.||+| ++| .+|..+..+++++
T Consensus        66 ~~lQ~~-G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~  144 (348)
T 2j5b_A           66 NNMIEC-GGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFS  144 (348)
T ss_dssp             HHHHHT-TEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHc-CCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhhe
Confidence            679995 999999999999999875  58999999999999999999999999999999998 444 6777776777777


Q ss_pred             eecceeeec---cc--cCCccccccccCCcccCCCCCCCCCcccCC---CCccceeccccccCCcccccccccCCccCCC
Q 022694           81 TYNKVVGIF---GF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH  152 (293)
Q Consensus        81 t~~~~~~~~---g~--~~~~~~g~~~YP~lqaad~~~~~~~Dil~~---~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~  152 (293)
                      +++++.+..   ++  .++.++|+|+||+||||        ||+.+   ++|   +||||.||++|+++|||+|+|||+.
T Consensus       145 ~~~~m~~~~~~~~r~~~~~i~~g~f~YP~lQaa--------Dil~~~~~~~~---~~~~G~DQ~~~i~l~Rdia~r~~~~  213 (348)
T 2j5b_A          145 TISRVKRCCQIMGRNESDCLKASQIFYPCMQAA--------DVFELVPEGID---ICQLGIDQRKVNMLAIEYANDRGLK  213 (348)
T ss_dssp             HHHHHTC-----------------CCHHHHHHH--------HHHHSSTTCCS---EECCBGGGHHHHHHHHHHHHHTTCC
T ss_pred             eHHHHHhhhhhhhhhccCCcChHHHhhHHHHHH--------HHHHHhcCCCc---EEEeccChHHHHHHHHHHHHHhCCC
Confidence            777766532   22  23568999999999999        89999   885   7999999999999999999999998


Q ss_pred             CcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee----ecceeeeee
Q 022694          153 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFF  228 (293)
Q Consensus       153 ~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~  228 (293)
                      .|.++++++||||+|+++|||||.++++|+|+|+|++|++|||+ |+|||..+       + ||.+.    +++++++.|
T Consensus       214 ~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i~kKI~k-a~td~~~~-------~-~~~~~~~~~~~~~~~~~~  284 (348)
T 2j5b_A          214 IPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISR-AYCTDETF-------D-NPIFEYIKYLLLRWFGTL  284 (348)
T ss_dssp             CCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCCHHHHHHHHHH-SCCCSSST-------T-CHHHHHHHHTHHHHHSCE
T ss_pred             CceeecCccccCCCCcccccccCCCCCeEeecCCHHHHHHHHhc-ccCCCCCC-------C-CchHhHHHHhhhhhhccc
Confidence            89998899999997656899999987899999999999999999 99998632       2 44332    112222211


Q ss_pred             e---cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 022694          229 L---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDA  281 (293)
Q Consensus       229 ~---~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~  281 (293)
                      +   .+++++++|+++|+ | ++|+++|+.||+.|+++|+|||+++++.+...+.+
T Consensus       285 ~i~~~~~~~~~el~~~~~-~-~~~~~~K~~la~~l~~~l~pir~~~~~~~~~~~~~  338 (348)
T 2j5b_A          285 NLCGKIYTDIESIQEDFS-S-MNKRELKTDVANYINTIIDLVREHFKKPELSELLS  338 (348)
T ss_dssp             EETTEEESSHHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred             ccccCCcchHHHHHHHHc-c-cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            1   13567999999999 5 89999999999999999999999998764333333

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=1.6e-57  Score=458.85  Aligned_cols=269  Identities=20%  Similarity=0.274  Sum_probs=229.2

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch--hhhhhHHhhhhe
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKC   79 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~   79 (293)
                      +|||++ ||.++|+||||||+++++  .+++++++++++++++|+|||+||+|++||.||+| +++  .+|..+.++++.
T Consensus        66 ~~lQ~~-G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~  144 (690)
T 3p0j_A           66 NKCTAA-GCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQ  144 (690)
T ss_dssp             HHHHHT-TEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHT
T ss_pred             HHHHHC-CCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhh
Confidence            469995 999999999999999864  78999999999999999999999999999999985 454  578888888999


Q ss_pred             eeecceeeec---ccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-Cc
Q 022694           80 VTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KP  154 (293)
Q Consensus        80 ~t~~~~~~~~---g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-~p  154 (293)
                      +|++++.++.   |+. .++++|+|+||+||||        ||+.+++|   +||||.||+||+++|||+|+|||+. +|
T Consensus       145 ~tv~~m~~~~~~~~r~~~~i~~g~f~YPlLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~p  213 (690)
T 3p0j_A          145 NTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKP  213 (690)
T ss_dssp             SCHHHHHTTC-------CCCCCSCSSHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCCC
T ss_pred             CCHHHHHhhhhhhhhccCCCchhhHhhHHHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCCc
Confidence            9998887643   332 2379999999999999        89999996   7999999999999999999999985 68


Q ss_pred             ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCch-hHHHHHHcCCC---eeeeecceeeeeeec
Q 022694          155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYLSFFLE  230 (293)
Q Consensus       155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~-~~~~~~~~~~~---p~~~~~~~~l~~~~~  230 (293)
                      .++++|+||||+++++|||||++||+|+|+|+|++|++|||+ |+||++. +..++.++|++   ++.++++.|+.++..
T Consensus       214 ~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~  292 (690)
T 3p0j_A          214 VILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVY  292 (690)
T ss_dssp             EEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTT
T ss_pred             eEeecCeeecCCCCCcCCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhc
Confidence            888899999994335799999998899999999999999999 9999764 11122344444   578889999887631


Q ss_pred             ------------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694          231 ------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  286 (293)
Q Consensus       231 ------------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~  286 (293)
                                  +++++++|+++|++|+++|++||+.|++.|+++|+|||+||++..++  ++++++.-+
T Consensus       293 ~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~~~  362 (690)
T 3p0j_A          293 ARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYR  362 (690)
T ss_dssp             TSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred             ccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Confidence                        35689999999999999999999999999999999999999998765  788776543

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=100.00  E-value=4.7e-55  Score=407.79  Aligned_cols=242  Identities=23%  Similarity=0.336  Sum_probs=212.1

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheeeec
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYN   83 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~~   83 (293)
                      +|||++ |+.++|+||||||++++..+++++++++++++++|+|||+||++++||.||+|+.+ .++..+..+++.+|++
T Consensus        57 ~~lq~~-g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~  135 (323)
T 2cyb_A           57 MDLQEA-GFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLN  135 (323)
T ss_dssp             HHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHH
T ss_pred             HHHHHC-CCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHH
Confidence            569995 99999999999999986459999999999999999999999999999999999754 6777778888888888


Q ss_pred             ceeeec---ccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           84 KVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        84 ~~~~~~---g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      ++.++.   ++. ++.++|+|+||+||||        |++.++++   +||||.||++|++++|++|+|||+++|..+++
T Consensus       136 ~l~~~~~~~~~~~~~~~~g~~~YP~lqaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~  204 (323)
T 2cyb_A          136 RARRSMDEVSRRKEDPMVSQMIYPLMQAL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLHT  204 (323)
T ss_dssp             HHHHHTTTTCSCSSSCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEE
T ss_pred             HHhccchhhccccCCCCchhhhhHHHHHH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEec
Confidence            887653   332 3458999999999999        89999995   79999999999999999999999999999999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee----------
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL----------  229 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~----------  229 (293)
                      |+||||+|  +||||| ++|+|+|+|+|++|++||++ |+||++.           ++.++++.|+++|.          
T Consensus       205 pll~~l~G--~KMSKS-~~n~I~l~d~p~~i~~Ki~~-a~td~~~-----------~~~~~~~~~~~~~~~p~~~~~~i~  269 (323)
T 2cyb_A          205 PILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRK-AYCPAGV-----------VEENPILDIAKYHILPRFGKIVVE  269 (323)
T ss_dssp             CCCBCTTS--SBCCTT-TTCSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTHHHHHSCEEEC
T ss_pred             CcccCCCC--CcccCC-cCceeCCCCCHHHHHHHHHh-cCCCCCC-----------CCcChHHHHHHHHhccccCceeEe
Confidence            99999998  799999 55799999999999999999 9998753           22355666666653          


Q ss_pred             ------c--ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022694          230 ------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  273 (293)
Q Consensus       230 ------~--~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~  273 (293)
                            .  +++++++|+++|++|+++|++||+.||+.|+++|+|||+||++
T Consensus       270 ~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~  321 (323)
T 2cyb_A          270 RDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV  321 (323)
T ss_dssp             CCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             chhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  0  3458999999999999999999999999999999999999975

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=100.00  E-value=2.6e-53  Score=402.55  Aligned_cols=246  Identities=20%  Similarity=0.227  Sum_probs=200.6

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHH---Hhc-cc-chhhcccCCCceeEeeccccc-chhhhhhHHhhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA---REN-AK-DIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAK   78 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~---~~~-~~-~~lA~Gldp~k~~i~~qs~~~-~~~~~~~~~~l~r   78 (293)
                      +|+|+ .|+.++|+||||||+|+++.+.+++.++.   ++. +. .++|||+||+++.+|.||+|+ ...++..++++++
T Consensus        60 ~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~  138 (372)
T 1n3l_A           60 ADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSS  138 (372)
T ss_dssp             HHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHT
T ss_pred             HHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHh
Confidence            56787 49999999999999998656666664444   332 44 468999999999999999995 3467777788998


Q ss_pred             eeeecceeee----ccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCc
Q 022694           79 CVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP  154 (293)
Q Consensus        79 ~~t~~~~~~~----~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p  154 (293)
                      .+|+.++++.    .++.++.++|+|+||+||||        ||+.++++   +||||.||++|++++|++++|||+++|
T Consensus       139 ~~t~~~~~~~~~~v~~~~~~~~~g~~~YP~lQaa--------Dil~~~a~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p  207 (372)
T 1n3l_A          139 VVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYSKR  207 (372)
T ss_dssp             TSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred             hCcHHHHHhchhhhhcccCCCcceeeecchHhhc--------cHHHhcCC---EEEcChhHHHHHHHHHHHHHHcCCCCC
Confidence            8888887764    23346679999999999999        89999995   799999999999999999999999999


Q ss_pred             ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeee----eecceeeeeeec
Q 022694          155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV----DIPVKYLSFFLE  230 (293)
Q Consensus       155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~----~~~~~~l~~~~~  230 (293)
                      ..+++|+||||+|  +|||||++|++|+|+|+|++|++|||+ |+|||+.+       +++|..    .++|++++.|+.
T Consensus       208 ~~l~~pll~gldG--~KMSKS~~ns~I~L~d~p~~i~kKi~~-A~td~~~~-------~d~~v~~~lk~~l~~~~~~f~~  277 (372)
T 1n3l_A          208 VHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKSEFVI  277 (372)
T ss_dssp             EEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTTCEEE
T ss_pred             EEEecCccCCCCc--ccccCCCCCCeEeccCCHHHHHHHHHH-ccCCCCCC-------CcccHHHHHHHhhhhhhcceee
Confidence            9999999999998  699999998899999999999999999 99998643       233322    345555555642


Q ss_pred             ----------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 022694          231 ----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  272 (293)
Q Consensus       231 ----------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~  272 (293)
                                +++++++|+++|.+|+++|+++|+.||+.|+++|+|+|++++
T Consensus       278 er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~  329 (372)
T 1n3l_A          278 LRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN  329 (372)
T ss_dssp             CCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence                      457899999999999899999999999999999999999998

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=100.00  E-value=2.5e-53  Score=394.45  Aligned_cols=236  Identities=19%  Similarity=0.233  Sum_probs=205.4

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheeeec
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYN   83 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~~   83 (293)
                      +|||++ |+.++|+|||+||++++..+++++++++++++++|+|||+|   ++++.||+|+++ .+|..+..+++.+|++
T Consensus        53 ~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~  128 (314)
T 2zp1_A           53 IDLQNA-GFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLK  128 (314)
T ss_dssp             HHHHHT-TEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHC-CCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHH
Confidence            679995 99999999999999986469999999999999999999999   778889999875 5777777888888888


Q ss_pred             ceeeec---ccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           84 KVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        84 ~~~~~~---g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      ++.++.   ++. ++.++|+|+||+||||        ||+.++++   +||||.||++|++++|++++    ++|.++++
T Consensus       129 ~l~~~~~~~~~~~~~~~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~  193 (314)
T 2zp1_A          129 RARRSMELIAREDENPKVAEVIYPIMQVN--------TSHYLGVD---VAVGGMEQRKIHMLARELLP----KKVVCIHN  193 (314)
T ss_dssp             HHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHSS----SCCEEEEE
T ss_pred             HHhccchhhhhccCCCCchhhhhHHHHHH--------hHHhhCCC---EEEcChhHHHHHHHHHHhcC----CCcEEeec
Confidence            777643   222 2248999999999999        89999985   79999999999999999997    68888999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee----------
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL----------  229 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~----------  229 (293)
                      |+||||+| ++||||| ++|+|+|+|+|++|++|||+ |+|||+.+           +.+++|.|+++|.          
T Consensus       194 ~~l~~l~G-~~KMSKS-~~~~I~L~d~~~~i~~KI~~-a~td~~~~-----------~~~~~~~~~~~~~~~~~~i~r~~  259 (314)
T 2zp1_A          194 PVLTGLDG-EGKMSSS-KGNFIAVDDSPEEIRAKIKK-AYCPAGVV-----------EGNPIMEIAKYFLEYPLTIKRPE  259 (314)
T ss_dssp             CCCBCTTS-SSBCCTT-TTCSCBTTCCHHHHHHHHHH-SCCCTTCC-----------TTCHHHHHHHHHCCSSEEECCCG
T ss_pred             cccccCCc-ccccCCC-CcceecCCCCHHHHHHHHHh-CCCCCCCC-----------CCCcHHHHHHHHhcCCcceeehh
Confidence            99999997 4799999 66799999999999999999 99997643           2366777777764          


Q ss_pred             -----cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022694          230 -----EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  273 (293)
Q Consensus       230 -----~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~  273 (293)
                           .++.++++|+++|++|+++|+++|+.||+.|+++|+|+|++++.
T Consensus       260 k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~  308 (314)
T 2zp1_A          260 KFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE  308 (314)
T ss_dssp             GGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 14568999999999999999999999999999999999999975

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-52  Score=396.64  Aligned_cols=262  Identities=19%  Similarity=0.197  Sum_probs=203.5

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHH----hcccchhhcccCCCceeEeecccccc-hhhhhhHHhhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAK   78 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~----~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r   78 (293)
                      .|+|. .|+.++|+|+||||+|+++ .+.+.++.+++    .+.+.|+|||+||+++.+|.||+|.. ..|+..++.++.
T Consensus        64 ~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~  142 (394)
T 2dlc_X           64 ADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSN  142 (394)
T ss_dssp             HHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhC
Confidence            45776 4999999999999999865 67777777753    34446789999999999999999975 356677778888


Q ss_pred             eeeecceeeec----cccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCc
Q 022694           79 CVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP  154 (293)
Q Consensus        79 ~~t~~~~~~~~----g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p  154 (293)
                      .+|++++++..    ++.++.++|+|+||+||||        |++.++++   +||||.||++|++++|+++++||+++|
T Consensus       143 ~~t~~~l~r~~~~~~r~~~~~~~g~~~YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p  211 (394)
T 2dlc_X          143 IVSQNDAKRAGADVVKQVANPLLSGLIYPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKKR  211 (394)
T ss_dssp             TSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred             cCcHHHHhcccHhhhcccCCccceeeechhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCCC
Confidence            88888876541    2235678999999999999        89999996   799999999999999999999999999


Q ss_pred             ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhH---------------HHHHHcCCCeeee
Q 022694          155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV---------------ELHRKLGANLEVD  219 (293)
Q Consensus       155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~---------------~~~~~~~~~p~~~  219 (293)
                      ..+++|+||||+| ++|||||++|++|+|+|+|++|++|||+ |+|||+.+.               +++++.|+++.+.
T Consensus       212 ~~l~~pll~gl~~-G~KMSKS~~ns~I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~  289 (394)
T 2dlc_X          212 AHLMNPMVPGLAQ-GGKMSASDPNSKIDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFF  289 (394)
T ss_dssp             EEEEECCCCCCC-----------CCSCBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEE
T ss_pred             EEEecccccCCCC-CCcCCCCCCCCEEeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEE
Confidence            9999999999992 3799999998789999999999999999 999996531               1222234433322


Q ss_pred             e--cceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc
Q 022694          220 I--PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA  284 (293)
Q Consensus       220 ~--~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~  284 (293)
                      +  -..++..+  +++++++|+++|.+|.++|++||+.||+.|+++|+|+|++++.-.  ..++++.
T Consensus       290 i~~~~~~~~~~--~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~--~~~~~~~  352 (394)
T 2dlc_X          290 IDRPEKFGGPI--TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNK--EFQEASE  352 (394)
T ss_dssp             ECCCGGGSCCE--EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred             EeccccccCcC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCH--HHHHHHh
Confidence            1  11124555  567899999999999899999999999999999999999988432  3555554

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=100.00  E-value=1.5e-51  Score=383.56  Aligned_cols=234  Identities=15%  Similarity=0.154  Sum_probs=198.0

Q ss_pred             HHHHhhcCCcEEEEeecccchhhccc---------ChHHHHHHH---HhcccchhhcccCCCceeEeecccccch----h
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNL---------SVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGG----A   68 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~---------~~~~i~~~~---~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~   68 (293)
                      +|||++ |+.++++|||+||+++++.         +++++++|+   +++++.|+|||+||+|++||.||+|+.+    +
T Consensus        59 ~~lQ~~-g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~  137 (322)
T 2yxn_A           59 KRFQQA-GHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLT  137 (322)
T ss_dssp             HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHH
T ss_pred             HHHHHc-CCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHH
Confidence            679995 9999999999999998652         899999999   8999999999999999999999999865    2


Q ss_pred             hhhhHH---hhhheeeecceeeeccc-cCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCcccc
Q 022694           69 FYKNMV---KVAKCVTYNKVVGIFGF-TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFR  140 (293)
Q Consensus        69 ~~~~~~---~l~r~~t~~~~~~~~g~-~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~  140 (293)
                      |+.+++   .++++.+...++.++++ .++.++|+|+||+||||        ||+.+    +++   +++||.||+||++
T Consensus       138 ~l~~~~~~~~v~~m~~~~~~k~r~~~~~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~---v~~gG~DQ~~~i~  206 (322)
T 2yxn_A          138 FLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGY--------DFACLNKQYGVV---LCIGGSDQWGNIT  206 (322)
T ss_dssp             HHHHTGGGCCHHHHTTCHHHHHHHHCTTCCCCHHHHTHHHHHHH--------HHHHHHHHHCEE---EEEECTTCHHHHH
T ss_pred             HHHHHhccccHHHHhhhHHHHHHhccCCCCccchhhhHHHHHHH--------HHHHHhccCCce---EEecCchhHHHHH
Confidence            333222   45555554444544442 34579999999999999        89999    885   5778999999999


Q ss_pred             cccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCee
Q 022694          141 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE  217 (293)
Q Consensus       141 laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~  217 (293)
                      +|||+|+|||+.+|..+++|+||||+|  +|||||.+| +|+|+|   +|+++++||++ + +              +  
T Consensus       207 l~rdla~r~n~~~~~~l~~pll~gldG--~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~-~--------------d--  265 (322)
T 2yxn_A          207 SGIDLTRRLHQNQVFGLTVPLITKADG--TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T-A--------------D--  265 (322)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-C-C--------------H--
T ss_pred             HHHHHHHHhCCCCceeeccCccCCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHhC-C-C--------------c--
Confidence            999999999998888889999999998  699999997 999999   99999999999 5 1              1  


Q ss_pred             eeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022694          218 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  273 (293)
Q Consensus       218 ~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~  273 (293)
                       +.+++|+++|+. +++++++|+++|.+|. +++++|+.||+.|+++|+|.+++++.
T Consensus       266 -~~v~~~l~~~~~~~~~~i~~l~~~~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~a  320 (322)
T 2yxn_A          266 -ADVYRFLKFFTFMSIEEINALEEEDKNSG-KAPRAQYVLAEQVTRLVHGEEGLQAA  320 (322)
T ss_dssp             -HHHHHHHHHHCCCCHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -ccHHHHHHHHHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence             234566666653 7889999999999886 99999999999999999999998765

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=100.00  E-value=2.6e-51  Score=394.47  Aligned_cols=242  Identities=18%  Similarity=0.151  Sum_probs=199.9

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccC--CCceeEeecccccchhhhhhH
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNM   73 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~~~   73 (293)
                      +|||++ |+.++++|||+||+++++         .+++++++|+..+.+++. +|+|  |+|++||.||+|.++.++..+
T Consensus        63 ~~lQ~~-G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~  140 (432)
T 1h3f_A           63 RQFQEL-GHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEV  140 (432)
T ss_dssp             HHHHHT-TCEEEEEECCCC---------------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHH
T ss_pred             HHHHHC-CCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHH
Confidence            679995 999999999999999864         468999999988777766 7899  999999999999988778888


Q ss_pred             Hhhhheeeecceeeeccc------cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCC
Q 022694           74 VKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP  147 (293)
Q Consensus        74 ~~l~r~~t~~~~~~~~g~------~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~  147 (293)
                      +++++++|++++.++.++      .++.++|+|+||+||||        ||+.++++   +||||.||++|++++||+++
T Consensus       141 l~l~~~~tv~~ml~~~~~k~r~~~~~~is~~ef~YPlLQaa--------Dil~l~~~---l~~gG~DQ~~ni~l~rdlar  209 (432)
T 1h3f_A          141 VRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREVQR  209 (432)
T ss_dssp             HHHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHHH
T ss_pred             HHHhCcCcHHHHHhhhhHHHHhhcCCCCCccccchhhHHhh--------hhhhcCcc---EEEechHHHHHHHHHHHHHH
Confidence            889999999988766543      25689999999999999        89999985   79999999999999999999


Q ss_pred             ccCCCCcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694          148 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  227 (293)
Q Consensus       148 r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~  227 (293)
                      |||..+|..+++|+||||+| ++|||||.+| +|+|+|+|++|++||++ +.+                  ++++.|+++
T Consensus       210 r~~~~~~~~lt~pll~gldG-~~KMSKS~~n-~I~L~dsp~~i~~Ki~~-~~d------------------~~v~~~l~~  268 (432)
T 1h3f_A          210 AYGQSPQVCFLMPLLVGLDG-REKMSKSLDN-YIGLTEPPEAMFKKLMR-VPD------------------PLLPSYFRL  268 (432)
T ss_dssp             HTTCCCCEEEEECCCBCTTS-SSBCCGGGTC-CCBTTSCHHHHHHHHHT-SCG------------------GGHHHHHHH
T ss_pred             HhCCCCceEeecccccCCCC-ccccCcCCCC-eeCCCCCHHHHHHHHhC-CCc------------------cHHHHHHHH
Confidence            99988888889999999998 4699999987 99999999999999999 743                  245678888


Q ss_pred             eecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHH----HHHHHHHhhhHH-HHHhhhcc
Q 022694          228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMAV  285 (293)
Q Consensus       228 ~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~----pir~~~~~~~~~-~l~~il~~  285 (293)
                      |+.  .+.+++++.+..   +|+++|+.||+.|+++++    |||+||+++++. ||++++++
T Consensus       269 ft~--~~~eei~~~~~~---~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~~  326 (432)
T 1h3f_A          269 LTD--LEEEEIEALLKA---GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGR  326 (432)
T ss_dssp             HCC--CCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTTC
T ss_pred             cCC--CCHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHhh
Confidence            853  344555555543   899999999999999999    999999999876 89999877

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=6.3e-50  Score=403.55  Aligned_cols=246  Identities=14%  Similarity=0.162  Sum_probs=209.5

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccccch---hhhhhHHhhhhe
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAKC   79 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~---~~~~~~~~l~r~   79 (293)
                      +|+|+.+||.++|+||||||+++++  .+++++++++.+++++|+|||+|| ++.|+.||+|...   .||..+++|++.
T Consensus       408 ~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~  486 (690)
T 3p0j_A          408 DFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS-SVKIVTENEVILGNCDDFWVSVIGIARK  486 (690)
T ss_dssp             HHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-CeEEEECCchhccchhhHHHHHHHHHHh
Confidence            6788888999999999999999987  899999999999999999999998 6777778888754   699999999999


Q ss_pred             eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      +|+++++++++ .++.++|+++||+||||        |++.+++|   ++|||+||++|++||||+|++++  +|..+++
T Consensus       487 ~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~  552 (690)
T 3p0j_A          487 NLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HVISTSLDGHINAFAREYTKERI--DCVQTLE  552 (690)
T ss_dssp             SCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EEEECSTTTTTTHHHHHHTTTCS--EEEECCC
T ss_pred             hhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EEecccccHHHHHHHHHHHHhcc--Ccccccc
Confidence            99999999886 57789999999999999        89999997   68999999999999999999976  5777889


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeee----eee-c----
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS----FFL-E----  230 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~----~~~-~----  230 (293)
                      +++|+|+||+.+||||+++|+|+|+|+|++|++||++ |||+|+ .       ++||.+..+ .|+.    -|+ +    
T Consensus       553 ~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~-v-------e~np~l~~~-~~~~~~~~~~~i~r~~~  622 (690)
T 3p0j_A          553 GRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN-E-------EANPVISVA-QHLLAQHGALSIERGEA  622 (690)
T ss_dssp             CSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT-C-------SCSHHHHHH-HHHHHHHSCEEECCCTT
T ss_pred             cccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC-C-------CCChHHHHH-HHHhccCCceEEechhh
Confidence            9999999997777788888899999999999999999 999884 2       477766432 2221    011 0    


Q ss_pred             -----ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694          231 -----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  275 (293)
Q Consensus       231 -----~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~  275 (293)
                           +++++++|+++|.+|++||+|+|++|++.|+++|+|+|++++-.+
T Consensus       623 ~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~~~  672 (690)
T 3p0j_A          623 NGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGEL  672 (690)
T ss_dssp             TTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                 247899999999999999999999999999999999999998443

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.3e-49  Score=380.06  Aligned_cols=237  Identities=14%  Similarity=0.102  Sum_probs=196.7

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc--------cChHHHHHHHHhc---ccchhhcccCCCceeEeecccccchh-hhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN--------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGA-FYKN   72 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~--------~~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~~-~~~~   72 (293)
                      +|||++ |+.++++|||+||+++++        .+++++++|++++   ++.++|||+||+|++||.||+|+++. ++.-
T Consensus        58 ~~lQ~~-G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~  136 (432)
T 2jan_A           58 RRFQRA-GHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEF  136 (432)
T ss_dssp             HHHHHT-TCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHH
T ss_pred             HHHHHC-CCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHH
Confidence            679995 999999999999999876        8899999999755   77899999999999999999998753 2222


Q ss_pred             HHhhhheeeecceeeeccc-----cCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccccc
Q 022694           73 MVKVAKCVTYNKVVGIFGF-----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTR  143 (293)
Q Consensus        73 ~~~l~r~~t~~~~~~~~g~-----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~laR  143 (293)
                      +-.+++.+|++++.++.++     .++.++|+|+||+||||        ||+.+    +++   +||||.||++|++++|
T Consensus       137 lr~l~~~~tv~~m~~~~~~k~r~~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgr  205 (432)
T 2jan_A          137 LRDIGKHFSVNVMLARDTIRRRLAGEGISYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWGNIIAGV  205 (432)
T ss_dssp             HHHTGGGCBHHHHHHSHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHHHHHHHH
T ss_pred             HHHHhccCcHHHHhcchHHhhhhcCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHH
Confidence            2224444444444443221     35679999999999999        89999    996   7999999999999999


Q ss_pred             ccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694          144 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  220 (293)
Q Consensus       144 dia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~  220 (293)
                      |+|+|||+.+|..++.|+|||++|  +|||||.+|++|+|+|   ||+++++||++ + +              ++++  
T Consensus       206 dlarr~~~~~~~~l~~plL~~ldG--~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-~--------------D~~v--  265 (432)
T 2jan_A          206 RLVRQKLGATVHALTVPLVTAADG--TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-A--------------DADV--  265 (432)
T ss_dssp             HHHHHHHCCCCEEEECCCCBCTTS--CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH--
T ss_pred             HHHHHhCCCCccccccccccCCCc--CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-C--------------chhH--
Confidence            999999998888899999999998  6999999988999999   99999999999 5 1              1123  


Q ss_pred             cceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694          221 PVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  275 (293)
Q Consensus       221 ~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~  275 (293)
                       ++|+++|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus       266 -~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~  319 (432)
T 2jan_A          266 -IRYLRWFTFLSADELAELEQATAQRP-QQRAAQRRLASELTVLVHGEAATAAVEH  319 (432)
T ss_dssp             -HHHHHHHSCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCChHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence             455555542 6789999999999886 9999999999999999999988766543

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*

Probab=100.00  E-value=1.6e-48  Score=367.21  Aligned_cols=235  Identities=14%  Similarity=0.089  Sum_probs=180.9

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCc-----------eeEeecccc
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDY   64 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k-----------~~i~~qs~~   64 (293)
                      +|||+. |+.++++|||+||+|+++         .+++++++|+++++++|+|+ +||++           +.|+.||+|
T Consensus        72 ~~lQ~~-G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w  149 (356)
T 2pid_A           72 FHLQRA-GHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAW  149 (356)
T ss_dssp             HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHH
T ss_pred             HHHHHC-CCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHh
Confidence            679995 999999999999999864         27999999999999999999 99866           888999999


Q ss_pred             cch-hhhhhH------HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccc
Q 022694           65 VGG-AFYKNM------VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAI  133 (293)
Q Consensus        65 ~~~-~~~~~~------~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~  133 (293)
                      ..+ .++..+      ..+++|.+...++.+....++.++|+|+||+||||        ||+.+    +++   +||||.
T Consensus       150 ~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~G~  218 (356)
T 2pid_A          150 YQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLGGS  218 (356)
T ss_dssp             HTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEEEG
T ss_pred             hhhccHHHHHHHHhcceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccH
Confidence            764 232222      33444444433333332234689999999999999        89999    996   799999


Q ss_pred             cCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHH
Q 022694          134 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHR  210 (293)
Q Consensus       134 DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~  210 (293)
                      ||+||+++|||+|+|||..+|..++.|+||||+|  +|||||.+| +|+|+|   +|++|++||++ + +          
T Consensus       219 DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~----------  283 (356)
T 2pid_A          219 DQLGNIMSGYEFINKLTGEDVFGITVPLITSTTG--AKLGKSAGN-AVWLNRDKTSPFELYQFFVR-Q-P----------  283 (356)
T ss_dssp             GGHHHHHHHHHHHHHHSSCCCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-C----------
T ss_pred             HHHHHHHHHHHHHHHhCCCCccccccccccCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHHc-C-C----------
Confidence            9999999999999999998888999999999998  699999765 999999   99999999999 5 1          


Q ss_pred             HcCCCeeeeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694          211 KLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  275 (293)
Q Consensus       211 ~~~~~p~~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~  275 (293)
                          ++++   ++|+.+|+. +.+++++|+++|++| .+++++|+.||+.|+++++..++.++...
T Consensus       284 ----D~~v---~~~l~~~t~~~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~  341 (356)
T 2pid_A          284 ----DDSV---ERYLKLFTFLPLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKR  341 (356)
T ss_dssp             ----HHHH---HHHHHHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----chhH---HHHHHHHHcCCchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence                1223   345554432 678999999999987 59999999999999999999998876543

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A

Probab=100.00  E-value=1.2e-47  Score=367.54  Aligned_cols=233  Identities=15%  Similarity=0.178  Sum_probs=192.0

Q ss_pred             HHHHhhcCCcEEEEeecccchhhccc---------ChHHHHHHHHhc---ccchhhcccCCCceeEeecccccch----h
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNL---------SVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGG----A   68 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~---------~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~----~   68 (293)
                      +|||++ |+.++++|||+||+++++.         +++++++|++.+   +..++++|+||++++||.||+|+++    +
T Consensus        56 ~~lQ~~-G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~  134 (419)
T 2ts1_A           56 RRFQQA-GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVIT  134 (419)
T ss_dssp             HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHH
T ss_pred             HHHHHC-CCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHH
Confidence            679995 9999999999999998652         999999999755   7788999999999999999999865    2


Q ss_pred             hhh---hHHhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccc
Q 022694           69 FYK---NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM  141 (293)
Q Consensus        69 ~~~---~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~l  141 (293)
                      |+.   ..+.++||.+...+++++  .++.++|+|+||+||||        ||+.+    +++   +||||.||++|+++
T Consensus       135 ~l~~~~~~~tv~rm~~~~~~k~r~--~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~l  201 (419)
T 2ts1_A          135 FLRDVGKHFSVNYMMAKESVQSRI--ETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNITA  201 (419)
T ss_dssp             HHHHTGGGCCHHHHHTSHHHHTTT--TTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHH
T ss_pred             HHHHHhcccCHHHHhccchhhhcc--CCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHH
Confidence            222   234444444444444433  35679999999999999        89999    885   79999999999999


Q ss_pred             ccccCCcc-CCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCee
Q 022694          142 TRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE  217 (293)
Q Consensus       142 aRdia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~  217 (293)
                      +||+|+|| |..+|..+++|+|||++|  +|||||.+| +|+|+|   ||+++++||++ + +              +++
T Consensus       202 grdlarr~~~~~~~~~lt~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~--------------D~~  262 (419)
T 2ts1_A          202 GLELIRKTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T-D--------------DRD  262 (419)
T ss_dssp             HHHHHHHHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C-C--------------HHH
T ss_pred             HHHHHHHhcCCCCeeecccccccCCCc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chh
Confidence            99999999 988888899999999998  699999875 999999   99999999999 4 1              112


Q ss_pred             eeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694          218 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  274 (293)
Q Consensus       218 ~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~  274 (293)
                         ++.|+++|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus       263 ---v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~  316 (419)
T 2ts1_A          263 ---VIRYLKYFTFLSKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQAI  316 (419)
T ss_dssp             ---HHHHHHHHCCCCHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence               3455555542 6789999999999886 999999999999999999988776543

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=100.00  E-value=1.2e-46  Score=361.20  Aligned_cols=234  Identities=14%  Similarity=0.184  Sum_probs=197.4

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCC---CceeEeecccccch-hhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGG-AFYK   71 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp---~k~~i~~qs~~~~~-~~~~   71 (293)
                      +|||++ |+.++++|||+||+++++         ++++++++|++++.++++|+ +||   ++++||.||+|+.+ .++.
T Consensus        58 ~~lQ~~-G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~  135 (420)
T 1jil_A           58 RRFQEH-GHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLIS  135 (420)
T ss_dssp             HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHH
T ss_pred             HHHHHC-CCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHH
Confidence            679995 999999999999999865         29999999999999999988 888   99999999999854 3333


Q ss_pred             hHHhhhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccccc
Q 022694           72 NMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTR  143 (293)
Q Consensus        72 ~~~~l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~laR  143 (293)
                      -+..+++++|++++.++.++    .++.++|+|+||+||||        ||+.+    +++   +||||.||++|++++|
T Consensus       136 ~l~~~~~~~tv~~m~~~~~~k~r~~~~is~~ef~YplLQaa--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~gr  204 (420)
T 1jil_A          136 FLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITSGI  204 (420)
T ss_dssp             HHHHTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHH
T ss_pred             HHHHHhccccHHHHhcchhhhhhccCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHH
Confidence            23346666666666655433    35679999999999999        89999    885   7999999999999999


Q ss_pred             ccCCcc-CCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee
Q 022694          144 DVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVD  219 (293)
Q Consensus       144 dia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~  219 (293)
                      |+|+|| |..+|..+++|+|||++|  +|||||.+| +|+|+|   ||+++++||++ + +              +++  
T Consensus       205 dla~r~~~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~--------------D~~--  263 (420)
T 1jil_A          205 ELMRRMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q-S--------------DED--  263 (420)
T ss_dssp             HHHHHHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C--------------HHH--
T ss_pred             HHHHHhcCCCCeeEeecccccCCcc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chh--
Confidence            999999 988888899999999998  699999976 999999   99999999999 4 1              112  


Q ss_pred             ecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694          220 IPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  274 (293)
Q Consensus       220 ~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~  274 (293)
                       ++.|+++|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus       264 -v~~~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~K~~La~~v~~~~hg~~~~~~a~  317 (420)
T 1jil_A          264 -VIKFLKYFTFLGKEEIDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDALNDAI  317 (420)
T ss_dssp             -HHHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence             3455555542 6789999999999886 999999999999999999988776543

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=100.00  E-value=9.5e-47  Score=358.93  Aligned_cols=236  Identities=14%  Similarity=0.087  Sum_probs=190.0

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcc-----------cC---CCceeEeec
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACG-----------FD---VTKTFIFSD   61 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~G-----------ld---p~k~~i~~q   61 (293)
                      +|||++ |+.++++|||+||+++++         .+++++++|++++.++++|+|           +|   |++++||.|
T Consensus        90 ~~lQ~~-G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~n  168 (392)
T 1y42_X           90 FWMYLE-GYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNN  168 (392)
T ss_dssp             HHHHHH-TCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEET
T ss_pred             HHHHHc-CCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEc
Confidence            679995 999999999999999864         488899999999988888865           45   789999999


Q ss_pred             ccccch-h---hhhhHH---hhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceecc
Q 022694           62 FDYVGG-A---FYKNMV---KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIP  130 (293)
Q Consensus        62 s~~~~~-~---~~~~~~---~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vp  130 (293)
                      |+|..+ .   ++..++   ++++|.+...++.+++..++.++|+|+||+||||        ||+.+    +++   +||
T Consensus       169 s~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~~---i~~  237 (392)
T 1y42_X          169 NHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGVQ---MQI  237 (392)
T ss_dssp             HHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEE
T ss_pred             cHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCcc---EEe
Confidence            998543 2   333343   6666665555555554446789999999999999        89866    575   799


Q ss_pred             ccccCCcccccccccCCccCC-----------------CCcccccccccccccCCccccccCCCCceeeecc---ChHHH
Q 022694          131 CAIDQDPYFRMTRDVAPRIGY-----------------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAI  190 (293)
Q Consensus       131 vG~DQ~~~~~laRdia~r~n~-----------------~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i  190 (293)
                      ||.||++|++++||+|+|||.                 ++|..+++|+||||+|  +|||||.+| +|+|+|   ||+++
T Consensus       238 gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i  314 (392)
T 1y42_X          238 GGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDF  314 (392)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHH
T ss_pred             cCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHH
Confidence            999999999999999999864                 4677788999999998  699999875 999999   99999


Q ss_pred             HHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 022694          191 KNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQV  269 (293)
Q Consensus       191 ~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~  269 (293)
                      ++||++ + +              ++++   +.|+.+|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.++
T Consensus       315 ~qki~~-~-~--------------D~~v---~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~  374 (392)
T 1y42_X          315 YGYFVR-R-S--------------DQEV---ENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQE  374 (392)
T ss_dssp             HHHHHT-C-C--------------TTTH---HHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHc-C-C--------------chhH---HHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHH
Confidence            999999 5 2              2233   345555442 6789999999999886 9999999999999999999998


Q ss_pred             HHHhhh
Q 022694          270 ARAAVT  275 (293)
Q Consensus       270 ~~~~~~  275 (293)
                      .++...
T Consensus       375 ~~~a~~  380 (392)
T 1y42_X          375 ASAAED  380 (392)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877543

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=97.46  E-value=3.2e-05  Score=75.33  Aligned_cols=72  Identities=17%  Similarity=0.120  Sum_probs=54.8

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceee-ecc---ChHHHHHHhhhcccC
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINKYAFS  200 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~i~~KI~k~A~t  200 (293)
                      |+|..|.|+..+-..-..+.+.||.+.|...|.|+|.+.+|  +|||||+++..|. +.+   .|+.|..-+...-.+
T Consensus       205 thviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s  280 (492)
T 2cfo_A          205 TDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWS  280 (492)
T ss_dssp             SEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBC
T ss_pred             CeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence            57889999998887777777889999898888999999998  7999998764321 111   577777776663333

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=97.34  E-value=5.2e-05  Score=69.28  Aligned_cols=60  Identities=18%  Similarity=0.112  Sum_probs=33.5

Q ss_pred             eccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeeccChHH
Q 022694          128 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA  189 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~  189 (293)
                      +|.-|.|+..+...-..+.+.||.+.|...|.|+|.+.+|  .|||||..+..|.-.++..-
T Consensus       187 hvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSKR~g~~~v~~~~~~~~  246 (298)
T 1nzj_A          187 EIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPV  246 (298)
T ss_dssp             EEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHH
T ss_pred             EEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--CcccccCCccChhcCCccHH
Confidence            4444999977665555566888999998889999999998  79999987655544444433

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=97.34  E-value=2.5e-05  Score=75.57  Aligned_cols=179  Identities=9%  Similarity=0.052  Sum_probs=106.0

Q ss_pred             HHH-HhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCcee-------Eeecccccch--hhhhh--
Q 022694            5 RYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGG--AFYKN--   72 (293)
Q Consensus         5 k~l-Q~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~--~~~~~--   72 (293)
                      .|+ -..+|..+++-|-|.    +.   .....++...++.++..+|++++...       .|.||+..+.  .+...  
T Consensus        25 n~l~Ar~~~G~filRieDt----D~---~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~   97 (468)
T 1j09_A           25 NYAWARRNGGRFIVRIEDT----DR---ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELL   97 (468)
T ss_dssp             HHHHHHHTTCEEEECBCCC----CT---TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEEeCcC----CC---cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHHH
Confidence            452 334688888888883    32   12234566677788889999999864       4889887641  11110  


Q ss_pred             -----------HHhh-------------hheeeecceeeec--cc--------cCC-------ccccccccCCcccCCCC
Q 022694           73 -----------MVKV-------------AKCVTYNKVVGIF--GF--------TGE-------DHIGKVSFPPVQAVPSF  111 (293)
Q Consensus        73 -----------~~~l-------------~r~~t~~~~~~~~--g~--------~~~-------~~~g~~~YP~lqaad~~  111 (293)
                                 --+|             +|..+..+..+..  |.        ...       .--|.+.+|..+.-   
T Consensus        98 ~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~---  174 (468)
T 1j09_A           98 KRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP---  174 (468)
T ss_dssp             HHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSC---
T ss_pred             HcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCC---
Confidence                       0111             1222222111100  10        000       11244555554443   


Q ss_pred             CCCCCcccCCCCccc----------------eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccC
Q 022694          112 PSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS  175 (293)
Q Consensus       112 ~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS  175 (293)
                           |..++++|..                |+|.-|.|+..|...-.-+.+.||.+.|...+.|++.+.+|  .||||+
T Consensus       175 -----D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g--~klSKR  247 (468)
T 1j09_A          175 -----DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDK--TKISKR  247 (468)
T ss_dssp             -----CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--CBCCTT
T ss_pred             -----CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCC--Cccccc
Confidence                 6666665420                34455999999988888888999998898888899999998  699999


Q ss_pred             CCCceee-ecc---ChHHHHHHhhhcccC
Q 022694          176 DPNSAIY-VTD---SAKAIKNKINKYAFS  200 (293)
Q Consensus       176 ~~~s~I~-L~D---~~~~i~~KI~k~A~t  200 (293)
                      +.+..|. +.+   .|+.|..-+...-++
T Consensus       248 ~g~~~l~~~~~~G~~peal~~~l~~lG~~  276 (468)
T 1j09_A          248 KSHTSLDWYKAEGFLPEALRNYLCLMGFS  276 (468)
T ss_dssp             TSCCBHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred             cchhhHHHHHHCCCCHHHHHHHHHHhccC
Confidence            8764221 111   577777766663333

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=97.26  E-value=0.00017  Score=71.63  Aligned_cols=66  Identities=11%  Similarity=0.094  Sum_probs=54.0

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  196 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k  196 (293)
                      |+|.-|.|+..+...-+.+.+.||.+.|...|.|+|.+.+|  .||||++++.  .|.+      .|+.|..-+..
T Consensus       317 thvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~  388 (592)
T 3al0_C          317 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL  388 (592)
T ss_dssp             SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS--SBCCTTTCSS--BHHHHHHTTCCHHHHHHHHTT
T ss_pred             CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccccCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence            46677999999999888899999999998888999999998  7999998753  3332      57777777766

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=97.07  E-value=0.00013  Score=71.03  Aligned_cols=66  Identities=11%  Similarity=0.083  Sum_probs=53.6

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  196 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k  196 (293)
                      |+|.-|.|+..+...-+.+.+.||.+.|...|.|+|.+.+|  +||||++++  +.|.+      .|+.|..-+..
T Consensus       213 ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g--~KLSKR~g~--~~l~~~r~~G~~peal~n~l~~  284 (488)
T 3afh_A          213 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGA--TSVEHFRREGILSRALMNYLAL  284 (488)
T ss_dssp             SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTS--SBCCTTTSC--CBHHHHHHHTCCHHHHHHHHHH
T ss_pred             CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCC--CcccCcCCc--ccHHHHHHCCCCHHHHHHHHHH
Confidence            46667999999988888888999999998889999999998  799999875  33332      57777777766

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=96.91  E-value=0.00021  Score=69.66  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=50.5

Q ss_pred             eccccccCCcccccccccCCcc-----CCCCcccccccccccccCCccccccCCCCceee-ecc---ChHHHHHHhhh
Q 022694          128 LIPCAIDQDPYFRMTRDVAPRI-----GYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  196 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r~-----n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~i~~KI~k  196 (293)
                      +|.-|.|+..+...-+.+.+.|     |.+.|...+.|++.+.+|  +||||++++..|. +.+   .|+.|..-+..
T Consensus       211 hviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g--~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~  286 (498)
T 2ja2_A          211 HVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGT--KKLSKRDPQSNLFAHRDRGFIPEGLLNYLAL  286 (498)
T ss_dssp             EEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSS--SBCCTTSGGGBHHHHHHHTCCHHHHHHHHHT
T ss_pred             EEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCC--CcccccCCcccHHHHHhCCCCHHHHHHHHHH
Confidence            4445999999988777777888     998998888999999998  6999998753221 111   56777766665

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=93.88  E-value=0.0062  Score=58.79  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=37.5

Q ss_pred             ccccccCCcccccccccCCccCCCCcc--ccccccc-ccccCCccccccCCCCceeeecc
Q 022694          129 IPCAIDQDPYFRMTRDVAPRIGYHKPA--LIESSFF-PALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       129 vpvG~DQ~~~~~laRdia~r~n~~~p~--~l~~~~l-pgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      -.+|.||..|+.--..+++.+|++++.  ++...++ -+-+|...|||||.+| .|.+.|
T Consensus       240 yv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d  298 (464)
T 3fnr_A          240 NIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD  298 (464)
T ss_dssp             EEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred             EEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence            379999999999888888999986542  2334555 2336644699999987 777654

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=93.19  E-value=0.0074  Score=58.41  Aligned_cols=54  Identities=19%  Similarity=0.184  Sum_probs=33.6

Q ss_pred             eccccccCCc-ccccccccCCccCCCCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~-~~~laRdia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +..+|.||.. |..+--..+..+|.+.|. .+++.+|.. +|  +|||||.+| .|.+.|
T Consensus       253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~d  308 (497)
T 2csx_A          253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPYE  308 (497)
T ss_dssp             CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHHH
T ss_pred             EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHHH
Confidence            4689999987 443311122234665554 445666654 65  799999987 776543

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=92.81  E-value=0.01  Score=57.44  Aligned_cols=53  Identities=19%  Similarity=-0.019  Sum_probs=34.0

Q ss_pred             eccccccCCc-cccc--ccccCCccCCCCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDP-YFRM--TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~-~~~l--aRdia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +..+|.||.. |..+  ++-  ..+|.+.|. .+++.+|..-+|  +|||||.+| .|.+.|
T Consensus       254 i~~~G~D~~~fh~~~~~a~~--~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~d  310 (500)
T 2d5b_A          254 WHLIGKDILKPHAVFWPTML--KAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPFA  310 (500)
T ss_dssp             EEEEEGGGHHHHHTHHHHHH--HHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred             EEEEeechhhhHHHHHHHHH--HHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHHH
Confidence            5689999987 3322  322  224665564 455777764365  799999987 776644

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=92.53  E-value=0.012  Score=56.97  Aligned_cols=66  Identities=14%  Similarity=0.030  Sum_probs=51.7

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  196 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k  196 (293)
                      |+|..|.||..|...-.-+.+.+|.+.|...|.|++.+.+|  +||||+.++.  .|.+      .|+.|..-+..
T Consensus       220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~  291 (481)
T 2o5r_A          220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGAT--SVEAFRDMGYLPEALVNYLAL  291 (481)
T ss_dssp             SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHHT
T ss_pred             CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999888888888999998898788898888887  6999998763  3322      46666666555

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=89.79  E-value=0.045  Score=57.03  Aligned_cols=57  Identities=26%  Similarity=0.132  Sum_probs=34.4

Q ss_pred             CCCccceeccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694          121 GKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +.+|   +...|.||..   |-.+....+ -+|..++ .++.+.++...+|  +|||||.+| .|...
T Consensus       547 ~P~D---l~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P~  607 (917)
T 1ffy_A          547 FPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPD  607 (917)
T ss_dssp             SSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCHH
T ss_pred             CCce---EEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCChH
Confidence            5566   4689999963   333333333 1343222 3345677776666  799999987 66543

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=89.56  E-value=0.022  Score=55.34  Aligned_cols=54  Identities=19%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             eccccccCCccc-ccccccCCccCCCCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYF-RMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~-~laRdia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +..+|.||...+ .+-...+..+|.+.|. ++.+.+|.. +|  +|||||.+| .|.+.|
T Consensus       268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p~d  323 (524)
T 2x1l_A          268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDPVN  323 (524)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCHHH
T ss_pred             EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCHHH
Confidence            467999997532 2111112223555553 344566554 55  799999986 776643

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=89.45  E-value=0.035  Score=54.69  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=32.1

Q ss_pred             eccccccCCcccc-c--ccccCCccCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~-l--aRdia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||..++. +  ++-.+  .|.+.|.. +.+.+| ..+|  +|||||.+| .|.+.|
T Consensus       297 v~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~d  352 (564)
T 3kfl_A          297 VHVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPVE  352 (564)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHHH
T ss_pred             eEEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHHH
Confidence            4689999977311 1  22122  25555544 346777 5566  799999987 776543

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=88.88  E-value=0.043  Score=56.78  Aligned_cols=57  Identities=19%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             CCCccceeccccccCCcccccccccCCc---cCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694          121 GKDHLRCLIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +.+|   +...|.||... =.+|.++..   +|. .|  .++.+.++...+|  +|||||.+| .|...|
T Consensus       480 ~P~d---~~v~G~Dii~~-W~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~d  541 (862)
T 1gax_A          480 YPGD---VLVTGYDILFL-WVSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE  541 (862)
T ss_dssp             CSBS---CEEEEGGGTTT-THHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHHH
T ss_pred             CCce---EEecCcccccc-HHHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHHH
Confidence            4555   46899998753 344444432   232 35  3445778877787  799999987 666543

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=87.94  E-value=0.051  Score=53.04  Aligned_cols=52  Identities=19%  Similarity=0.093  Sum_probs=21.4

Q ss_pred             eccccccCCccc-cc--ccccCCccCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYF-RM--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~-~l--aRdia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||...+ .+  ++-.+  +|.+.|.. +.+.+|. ++|  +|||||.+| .|.+.|
T Consensus       279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d  334 (536)
T 4dlp_A          279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE  334 (536)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred             eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence            467899998731 11  33222  35555543 3466764 466  799999987 776543

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=86.99  E-value=0.057  Score=51.10  Aligned_cols=52  Identities=19%  Similarity=0.133  Sum_probs=20.2

Q ss_pred             eccccccCCc-ccccccccCCcc-CCCCc-ccc-cccccccccCCccccccCCCCceeee
Q 022694          128 LIPCAIDQDP-YFRMTRDVAPRI-GYHKP-ALI-ESSFFPALQGETGKMSASDPNSAIYV  183 (293)
Q Consensus       128 ~vpvG~DQ~~-~~~laRdia~r~-n~~~p-~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L  183 (293)
                      +.++|.|+.. |++...-...-+ |.+++ .++ ++.+|. ++|  +|||||.+| .|.+
T Consensus       247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~  302 (414)
T 3c8z_A          247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLV  302 (414)
T ss_dssp             EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBH
T ss_pred             EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCH
Confidence            4578999876 655543333222 54333 233 335554 466  799999987 6655

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=86.89  E-value=0.034  Score=54.28  Aligned_cols=65  Identities=22%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             cccccCCccc---ccccccC-CccCCCCcccccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694          130 PCAIDQDPYF---RMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  196 (293)
Q Consensus       130 pvG~DQ~~~~---~laRdia-~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k  196 (293)
                      ++|.|+....   ....+++ .-+|.+.|..+++++|.+ .|.++|||||.+| .|.+.|     .|+.++--+.+
T Consensus       235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~  308 (523)
T 1irx_A          235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR  308 (523)
T ss_dssp             CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred             CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence            6788876611   1223444 467877787777887765 3223799999986 554432     55555555544

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=86.61  E-value=0.072  Score=51.20  Aligned_cols=64  Identities=17%  Similarity=0.099  Sum_probs=35.8

Q ss_pred             eccccccCC-ccccc--ccccCCccCCCCccc-ccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694          128 LIPCAIDQD-PYFRM--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  196 (293)
Q Consensus       128 ~vpvG~DQ~-~~~~l--aRdia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k  196 (293)
                      +..+|.|+. +|++.  +.-.|- +|.+.|.. +++.+|.. +|  +|||||.+| .|.+.|     +++.++=-+.+
T Consensus       223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~~dll~~~g~dalR~~ll~  295 (461)
T 1li5_A          223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTVRDVLKYYDAETVRYFLMS  295 (461)
T ss_dssp             EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBHHHHHTTSCHHHHHHHHHS
T ss_pred             EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccChhHHhhhCCHHHHHHHHHc
Confidence            457899976 45322  222211 46554533 45566543 55  799999987 676543     44555443333

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=86.48  E-value=0.073  Score=54.75  Aligned_cols=53  Identities=23%  Similarity=0.138  Sum_probs=30.4

Q ss_pred             eccccccCCcccccccccCC--c-cCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694          128 LIPCAIDQDPYFRMTRDVAP--R-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~--r-~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +..+|.||.... +.+-++.  - ++.+++ .++.+.++...+|  +|||||.+| .|.+.
T Consensus       547 l~~~G~D~~r~w-~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~  603 (821)
T 1ile_A          547 FIAEGIDQTRGW-FNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPW  603 (821)
T ss_dssp             BEEEEGGGGGTH-HHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHH
T ss_pred             cccchhhhhccH-HHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHH
Confidence            346899996421 1121111  1 133233 3445777777777  799999987 66553

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=86.44  E-value=0.061  Score=52.38  Aligned_cols=52  Identities=15%  Similarity=0.100  Sum_probs=30.5

Q ss_pred             eccccccCCccc---ccccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~---~laRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +...|.||..++   ..++-++.  |.+.|..+ ++.+| ..+|  +|||||.+| .|...|
T Consensus       281 ~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l-~~~G--~KMSKSlGN-vi~p~~  336 (542)
T 3u1f_A          281 VHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWW-TKDR--KKISKSLGN-VFDPVE  336 (542)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCC-EETT--BCCBTTTTB-CCCHHH
T ss_pred             EEEecccccccccchhHHHHHhh--cccccceeccccce-ecCC--ceeccccCC-CCChhH
Confidence            457899996643   22333332  55555444 45554 3455  899999987 665433

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=84.84  E-value=0.077  Score=52.08  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=29.7

Q ss_pred             ccccccCCccc-ccccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694          129 IPCAIDQDPYF-RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       129 vpvG~DQ~~~~-~laRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      -.+|.||..++ .+=--+...+|++.|..+ .+.+|.. +|  +|||||.+| .|.+.|
T Consensus       304 ~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p~d  358 (560)
T 3h99_A          304 HFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKAST  358 (560)
T ss_dssp             EEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBHHH
T ss_pred             EEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCHHH
Confidence            35799988731 111011122455666433 3555543 65  799999987 776543

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=82.88  E-value=0.15  Score=52.24  Aligned_cols=58  Identities=21%  Similarity=0.088  Sum_probs=32.4

Q ss_pred             CCCccceeccccccCCc-ccccccccCCc-cCC-CCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694          121 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~-~~~laRdia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +.+|   +..+|.||.. |+...+-...- ++. +-| ..+++.+|.. +|  +|||||.+| .|.+.|
T Consensus       602 ~p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d  663 (810)
T 1wkb_A          602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFID  663 (810)
T ss_dssp             CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHHH
T ss_pred             CCce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHHH
Confidence            3455   4579999976 53433221111 221 223 3345666553 55  799999987 776543

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=81.96  E-value=0.38  Score=50.37  Aligned_cols=57  Identities=19%  Similarity=0.062  Sum_probs=32.0

Q ss_pred             CCCccceeccccccCCc-ccccccccCCc-cCC-CCc-ccccccccccccCCccccccCCCCceeeec
Q 022694          121 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ~~-~~~laRdia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +.+|   +..+|.||.. |+...+-...- ++. +-| ..+++.+|.. +|  +|||||.+| .|...
T Consensus       602 ~P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~  662 (967)
T 1wz2_A          602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFI  662 (967)
T ss_dssp             CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBHH
T ss_pred             CCCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCHH
Confidence            4455   4579999965 43332211111 221 223 3445666654 65  799999987 66654

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=80.37  E-value=0.25  Score=51.24  Aligned_cols=40  Identities=13%  Similarity=0.026  Sum_probs=22.5

Q ss_pred             CCCccceeccccccC-Cccccccccc---CCc---cCCCCcc--cccccccc
Q 022694          121 GKDHLRCLIPCAIDQ-DPYFRMTRDV---APR---IGYHKPA--LIESSFFP  163 (293)
Q Consensus       121 ~~ad~~~~vpvG~DQ-~~~~~laRdi---a~r---~n~~~p~--~l~~~~lp  163 (293)
                      +.+|   +..+|.|| .-|+-.+|-.   +..   +...+|.  ++.+.||-
T Consensus       542 ~PvD---~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl  590 (880)
T 4arc_A          542 LPVD---IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVL  590 (880)
T ss_dssp             CSEE---EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEE
T ss_pred             CCce---EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEe
Confidence            3455   56899999 5577667622   111   2235673  34466763

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=80.04  E-value=0.31  Score=47.16  Aligned_cols=68  Identities=15%  Similarity=0.077  Sum_probs=49.2

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceee-ec---cChHHHHHHhhh
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK  196 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~i~~KI~k  196 (293)
                      |+|.-|.|...+---=.-+.+.||.+.|...|.|+|.+-+|  +||||.++..+|. +-   -.|+.|..-+..
T Consensus       222 ThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~  293 (490)
T 4g6z_A          222 THVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR  293 (490)
T ss_dssp             CEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred             CEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence            57888888766544444455778999999889999999887  7999998643321 11   268888877766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1r6ta2	386	c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (	6e-71
d1n3la_	339	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum	5e-22
d2ts1a_	319	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bac	7e-21
d1jila_	323	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Sta	1e-13
d1j1ua_	306	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc	3e-13

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  221 bits (565), Expect = 6e-71
 Identities = 178/290 (61%), Positives = 226/290 (77%), Gaps = 2/290 (0%)

Query: 1   MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
               ++LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFS
Sbjct: 96  FIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 155

Query: 61  DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL 118
           D DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +
Sbjct: 156 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 215

Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
           F  +  ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPN
Sbjct: 216 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 275

Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
           S+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I
Sbjct: 276 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 335

Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
           +K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 336 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 5e-22
 Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 30/281 (10%)

Query: 4   NRYLQDA-----FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 58
                 A          +    D+ K  W  L               + + G  + K   
Sbjct: 56  IADFLKAGCEVTILFADLHAYLDNMKAPW-ELLELRVSYYENVIKAMLESIGVPLEKLKF 114

Query: 59  FSDFDYVGGAFY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPS 113
               DY     Y     +    V +  +      +        +  + +P +QA+     
Sbjct: 115 IKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYL 174

Query: 114 SFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 173
                              IDQ   F       P +GY K   + +   P L     KMS
Sbjct: 175 KV-----------DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMS 221

Query: 174 ASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE--- 230
           +S+  S I + D  + +K K+ K     G            ++   +  +++    E   
Sbjct: 222 SSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWG 281

Query: 231 ---DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 268
                     ++K++ A  +  G++K  +   L +L++  +
Sbjct: 282 GNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIR 322

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score = 88.6 bits (219), Expect = 7e-21
 Identities = 34/278 (12%), Positives = 75/278 (26%), Gaps = 25/278 (8%)

Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
           R  Q A   P+ +           +    E    A+E  +   A   +    F+  + D 
Sbjct: 56  RRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADG 115

Query: 65  ------VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSSFPH 117
                     +   +  +       K   +     ++ +       +     S+     +
Sbjct: 116 NPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAY 175

Query: 118 LFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 177
            F                D +  +T  +         A       P +    G       
Sbjct: 176 DFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTE 235

Query: 178 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELE 236
           +  I++                     S     +   N +    ++YL +F      E+E
Sbjct: 236 SGTIWLDKEKT----------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIE 279

Query: 237 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274
            +++E           ++ LA+ +T+LV   +  R A+
Sbjct: 280 ALEQELREAPEKR-AAQKTLAEEVTKLVHGEEALRQAI 316

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 67.9 bits (165), Expect = 1e-13
 Identities = 31/276 (11%), Positives = 76/276 (27%), Gaps = 24/276 (8%)

Query: 5   RYLQDA--FKVPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 61
           R  Q+     + L+   T        K+           +   + I+        F    
Sbjct: 57  RRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDH 116

Query: 62  FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHL 118
              +     +   +  ++    Y K VG+    G +    ++         ++       
Sbjct: 117 GAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAID 176

Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
           F   +            D +  +T  +      +          P +    GK      +
Sbjct: 177 FGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSES 236

Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEH 237
            A+++                   + S     +   N   +  +K+L +F      E++ 
Sbjct: 237 GAVWLDAE----------------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDR 280

Query: 238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 273
           +++       L  E ++ LA+ +T+ +        A
Sbjct: 281 LEQSKNEAPHLR-EAQKTLAEEVTKFIHGEDALNDA 315

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 66.6 bits (161), Expect = 3e-13
 Identities = 40/271 (14%), Positives = 83/271 (30%), Gaps = 27/271 (9%)

Query: 5   RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
             LQ+A    ++I L D    + +   ++E +++   N K   A G      +       
Sbjct: 53  IDLQNA-GFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLD 111

Query: 65  VGGA-FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
                    +          + + +     E+        P               +   
Sbjct: 112 KDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYP-----------IMQVNDIH 160

Query: 124 HLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
           +L        ++Q     + R+    +   K   I +     L GE     +S   + I 
Sbjct: 161 YLGVDVAVGGMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMSSSKGNFIA 214

Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFLEDDAELEH 237
           V DS + I+ KI K     G        +     L   L +  P K+           E 
Sbjct: 215 VDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL--TVNSYEE 272

Query: 238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 268
           ++  +    +   ++K  +A+ L +++E  +
Sbjct: 273 LESLFKNKELHPMDLKNAVAEELIKILEPIR 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	100.0
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	100.0
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	100.0
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	100.0
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	100.0
d1jila_	323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	99.96
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	99.94
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	92.97
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	91.2
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	91.12
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	90.57
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	90.17
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	89.73
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	88.81
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	83.73
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	83.22

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-71  Score=523.22  Aligned_cols=285  Identities=62%  Similarity=1.067  Sum_probs=269.1

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccc--hhhhhhHHhhhhe
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKC   79 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~--~~~~~~~~~l~r~   79 (293)
                      ++ +|+|++.|+.++|+|||+||++++..+++++++++++++++|+|||+||+|++||.||+|.+  .++|.++.+++|+
T Consensus        98 ~~-~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~~~l~~~~~~~~~l~r~  176 (386)
T d1r6ta2          98 FT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKH  176 (386)
T ss_dssp             HH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHT
T ss_pred             HH-HHHHHhcccceEEEecchHhhhcccCCHHHHHHHHHHHHHHHHHhCCCccceEEEeCcHHHHHHHHHHHHHHHHHHh
Confidence            45 89999889999999999999998668999999999999999999999999999999999975  3789999999999


Q ss_pred             eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694           80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES  159 (293)
Q Consensus        80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~  159 (293)
                      +|++++++++|+.++.|+|+++||+|||||+|+.+++.++.++.+++|+||||.||+||+++|||+|+|||+++|.++++
T Consensus       177 ~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltRDia~r~~~~~p~~l~~  256 (386)
T d1r6ta2         177 VTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHS  256 (386)
T ss_dssp             CBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEE
T ss_pred             cchhHHHHhhccccCCcCcccccHHHHHHHHHHhcChhhhccccccccccccchhHHHHHHHHHHHHHHhCCCCceeecc
Confidence            99999999999999999999999999999998888888888888889999999999999999999999999999999999


Q ss_pred             cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCC-CchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHH
Q 022694          160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSG-GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI  238 (293)
Q Consensus       160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~-~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei  238 (293)
                      +++|||+|+++|||||+|+|+|+|+|+|++|++||++ |+|+ ++.+.+++++.|+||+.++++.|+.+|..++++++++
T Consensus       257 ~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~-~~~~~~~~~~~e~~~~~g~~~~~v~~~~l~~f~~d~~~~eel  335 (386)
T d1r6ta2         257 TFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK-HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI  335 (386)
T ss_dssp             CCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHH-HSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHH
T ss_pred             ccccCCCCcccccccCCCCceeeecCCHHHHHHHhhh-eeeecCCcccccccccCCCcchhHHHHHHHHHcCCHhHHHHH
Confidence            9999999988899999999999999999999999999 6665 4578888999999999999999999988788999999


Q ss_pred             HHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694          239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  288 (293)
Q Consensus       239 ~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~  288 (293)
                      +++|.+|+++|++||+.||+.|+++|+|+|+|+++++++.++++|+.+|+
T Consensus       336 ~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl  385 (386)
T d1r6ta2         336 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL  385 (386)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999899999998886

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=4.1e-59  Score=433.44  Aligned_cols=258  Identities=21%  Similarity=0.268  Sum_probs=218.8

Q ss_pred             HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694            5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK   75 (293)
Q Consensus         5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~   75 (293)
                      +|  ||+  |+.++|+||||||+|++ .+.+++++++++++++|+|||+||++++||.||++++|    |+++   .+.+
T Consensus        25 ~~~~lq~--~~~~~i~iAD~halt~~-~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~~el~~~l~~~~~~~~  101 (326)
T d1i6la_          25 QFVELQH--EYNCYFCIVDQHAITVW-QDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGE  101 (326)
T ss_dssp             HHHHHTT--TSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHhC--CCCEEEEeehHHhhccC-CCHHHHHHHHHHHHHHhhhhhccccceEEEeecccchHHHHHHHHHhhhhhhh
Confidence            66  666  77789999999999975 78899999999999999999999999999999999987    2233   3788


Q ss_pred             hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC---
Q 022694           76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH---  152 (293)
Q Consensus        76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~---  152 (293)
                      +.|++++++..+   +.++.++|+++||+||||        |||.+++|   +||||.||+||+|||||+|+|||+.   
T Consensus       102 l~r~~~~k~~~~---~~~~~~~g~l~YP~lQaA--------DIl~~~~d---~vpvG~DQ~~h~eltRdia~r~n~~~~~  167 (326)
T d1i6la_         102 LERMTQFKEKSA---GKEAVSAGLLTYPPLMAA--------DILLYNTD---IVPVGEDQKQHIELTRDLAERFNKRYGE  167 (326)
T ss_dssp             HHTCHHHHHHHT---TCSSCCHHHHTHHHHHHH--------HHHTTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHCS
T ss_pred             hhhcccchhhcc---ccccCCccccccccccch--------hHHhcCcc---ccccccchHHHHHHHHHHHHHhhhccCC
Confidence            999999988754   357889999999999999        89999996   7999999999999999999999962   


Q ss_pred             ---Ccc--cc-cccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694          153 ---KPA--LI-ESSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  224 (293)
Q Consensus       153 ---~p~--~l-~~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~  224 (293)
                         .|.  +. .+++++++.++++|||||++|  ++|+|+|+|++|++||++ |+||+..+.+  +..+++|++++++.+
T Consensus       168 ~~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~i~kKI~~-a~td~~~~~~--~~~~~~p~~~~l~~i  244 (326)
T d1i6la_         168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLLNI  244 (326)
T ss_dssp             CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CCTTTCHHHHHHHHH
T ss_pred             cccccccccccccceeeecCCccccccccCCCccceeeccCCHHHHHHHHHh-hhccccCCcc--ccccCCCCccHHHHH
Confidence               121  11 134555554446899999875  689999999999999999 9999876543  345789999999999


Q ss_pred             eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhccc
Q 022694          225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  286 (293)
Q Consensus       225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~il~~~  286 (293)
                      +..+  ++.+.+++..+|..  .++++||+.|++.|+++|+|||+||+++.++ +|+++|.+|
T Consensus       245 ~~~~--~~~~~~e~~~~~~~--~~~gdlK~~lae~i~~~L~PiRer~~~l~~~~~l~~iL~~G  303 (326)
T d1i6la_         245 YSTL--SGQSIEELERQYEG--KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG  303 (326)
T ss_dssp             HHHH--HCCCHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred             HHHc--CCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9888  45678888888863  5899999999999999999999999999876 999999875

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-52  Score=387.67  Aligned_cols=256  Identities=18%  Similarity=0.202  Sum_probs=201.6

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHH----hcccchhhcccCCCceeEeecccccch-hhhhhHHhhhh
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAK   78 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~----~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r   78 (293)
                      +|+|++ |+.++|+||||||+++++ .+.+....+..    .+.+.|.|+|+||+++.++.||+|..+ .||..++++++
T Consensus        57 ~~~q~~-g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~d~~k~~i~~~sd~~~~~~~~~~~~~~~~  135 (339)
T d1n3la_          57 ADFLKA-GCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSS  135 (339)
T ss_dssp             HHHHHT-TCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHT
T ss_pred             HHHHHC-CCcEEEEecchhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhccChHHheeeecChHhhhhhHHHHHhhHHH
Confidence            679984 999999999999999865 44444333332    334567799999999999999999754 67777888888


Q ss_pred             eeeecceeee----ccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCc
Q 022694           79 CVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP  154 (293)
Q Consensus        79 ~~t~~~~~~~----~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p  154 (293)
                      .++..+....    .+..++.++|+|+||+||||        |||.+++|   +||||.||++|+++|||+|+|||+++|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~g~f~YP~lQaa--------Dil~~~ad---~v~~G~DQ~~~i~l~rd~a~r~~~~~~  204 (339)
T d1n3la_         136 VVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYSKR  204 (339)
T ss_dssp             TSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred             HHHHHHHHHHHHHHhccCCCCccccccccHHHHH--------HHHhccCC---ccccchhHHHHHHHHHHHHhhhccCcc
Confidence            8887665443    23456788999999999999        89999996   799999999999999999999999999


Q ss_pred             ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee----ecceeeeeeec
Q 022694          155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFFLE  230 (293)
Q Consensus       155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~~~  230 (293)
                      ..+++|++|||+|  .|||||+++++|+|+|+|++|++||++ |+|++...       .+||...    ++|.++..+..
T Consensus       205 ~~l~~pll~~l~g--~kmsks~~~~~I~l~D~~~~I~kKI~~-a~td~~~~-------~~~~~~~~~~~~~~~~~~~~~~  274 (339)
T d1n3la_         205 VHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKSEFVI  274 (339)
T ss_dssp             EEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTTCEEE
T ss_pred             eeeeecccccccc--ccccccchhhcccccCCHHHHHHHHhh-ccCCCCCc-------ccCccccchhhhccchhhcccc
Confidence            9999999999999  599999998999999999999999999 99997653       2444332    23333322211


Q ss_pred             ----------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc
Q 022694          231 ----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV  285 (293)
Q Consensus       231 ----------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~  285 (293)
                                +++++++++++|.+|+++++++|++||++|+++|+|||++++.   +++++++.+
T Consensus       275 ~~~~~~~~~~~~~~~~el~~~y~~g~l~~~dlK~~la~~i~~~l~pire~~~~---~e~~~l~~~  336 (339)
T d1n3la_         275 LRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNT---PALKKLASA  336 (339)
T ss_dssp             CCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHH
T ss_pred             ccHHHhcCCCCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHhc
Confidence                      2467899999999999999999999999999999999999852   256666553

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.9e-50  Score=370.62  Aligned_cols=236  Identities=20%  Similarity=0.257  Sum_probs=186.4

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheeeecc
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK   84 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~~~   84 (293)
                      +|||+. |+.++|+||||||+++++.++++++++++++++.|+|+|+||+.  ++.++.+....++..+.++++.+++++
T Consensus        53 ~~lq~~-g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~  129 (306)
T d1j1ua_          53 IDLQNA-GFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKY--VYGSEFQLDKDYTLNVYRLALKTTLKR  129 (306)
T ss_dssp             HHHHHT-TEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCCEE--EEGGGTTTSHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHC-CCcEEEEeccHHHHhhhccchhhhhhhhhHHHHHHHhhhccccc--cccchhhhhhhHHHhhhhhhhhhhhhh
Confidence            679996 99999999999999987689999999999999999999999942  332223333456666666777777766


Q ss_pred             eeeecc----ccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccc
Q 022694           85 VVGIFG----FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS  160 (293)
Q Consensus        85 ~~~~~g----~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~  160 (293)
                      +.+...    ..++.++|+|+||+||||        ||+.++++   +||||.||++|++++|+++++    +|.++++|
T Consensus       130 ~~~~~~~~~r~~~~~~~~~~~YP~lQaa--------Dil~~~~~---~~~~G~DQ~~~~~l~rdl~~~----~~~~~~~~  194 (306)
T d1j1ua_         130 ARRSMELIAREDENPKVAEVIYPIMQVN--------DIHYLGVD---VAVGGMEQRKIHMLARELLPK----KVVCIHNP  194 (306)
T ss_dssp             HHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHSSS----CCEEEEEC
T ss_pred             hhhhhhhhhhhhhccccccccccchhhc--------chhhcCcc---eeccchhhHHHHHHhhhcccc----cceecccc
Confidence            655432    246789999999999999        89999995   799999999999999999984    67888999


Q ss_pred             ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecc-------------eeeee
Q 022694          161 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV-------------KYLSF  227 (293)
Q Consensus       161 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~-------------~~l~~  227 (293)
                      +||||+|. +|||||.+ |+|+|+|+|++|++||++ |+|+++..       ++||......             .+...
T Consensus       195 ~l~gldG~-~KMSKS~~-n~I~L~D~~e~I~~KI~~-a~td~~~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~  264 (306)
T d1j1ua_         195 VLTGLDGE-GKMSSSKG-NFIAVDDSPEEIRAKIKK-AYCPAGVV-------EGNPIMEIAKYFLEYPLTIKRPEKFGGD  264 (306)
T ss_dssp             CCCCTTCC-C--------CSCBTTCCHHHHHHHHHH-SCCCTTCC-------TTCHHHHHHHHTCCSSEEECCCGGGTCC
T ss_pred             cccCcccc-cccccccc-cccccCCCHHHHHHHHhh-eeccCCcc-------cCCCchHHHHHhhcccHhhccHHHHhcc
Confidence            99999994 79999976 599999999999999999 99998643       2344332111             11111


Q ss_pred             eecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 022694          228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA  270 (293)
Q Consensus       228 ~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~  270 (293)
                      +  ++.+++++++.|++|+++|++||+.||+.|+++|+|||||
T Consensus       265 ~--~~~~~~el~~~~~~g~l~~~~~K~~lae~i~~~l~pirer  305 (306)
T d1j1ua_         265 L--TVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKR  305 (306)
T ss_dssp             E--EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             C--ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            1  4578999999999999999999999999999999999997

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.7e-41  Score=312.36  Aligned_cols=224  Identities=18%  Similarity=0.172  Sum_probs=163.6

Q ss_pred             HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhh-cccCCCceeEeecccccchhhhhhHH
Q 022694            5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIA-CGFDVTKTFIFSDFDYVGGAFYKNMV   74 (293)
Q Consensus         5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA-~Gldp~k~~i~~qs~~~~~~~~~~~~   74 (293)
                      +|||+. |+.++++||||||+++++         .+.+.+.++....+..... .+.++....|+.+++|..+..|..++
T Consensus        59 ~~lq~~-g~~~~~~iad~~a~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l  137 (343)
T d1h3fa1          59 RQFQEL-GHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVV  137 (343)
T ss_dssp             HHHHHT-TCEEEEEECCCC---------------------HHHHHHHHHHHTTTSCCCTTTEEEEETHHHHTTCBHHHHH
T ss_pred             HHHHHC-CCceEEEEechhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhheechHHHhhhhHHHHH
Confidence            789995 999999999999999863         1223344444444443332 34456677888888887665555555


Q ss_pred             hhhheeeecceeee------ccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCc
Q 022694           75 KVAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR  148 (293)
Q Consensus        75 ~l~r~~t~~~~~~~------~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r  148 (293)
                      +.++.++++.+.+.      .....+.++|+|+||+||||        ||+.+++|   +||||.||+||+++|||+|+|
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~YP~lQaa--------Di~~l~~~---~vp~G~DQ~~~i~l~Rdla~r  206 (343)
T d1h3fa1         138 RLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREVQRA  206 (343)
T ss_dssp             HHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHHHH
T ss_pred             HhcccceecchhhhhhhhhcccccccccchhhhhHHHHhh--------hhhhhccc---ccccccchHHHHHHHHHHHhh
Confidence            56666666555443      22345678999999999999        89999985   799999999999999999999


Q ss_pred             cCCCCcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeee
Q 022694          149 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF  228 (293)
Q Consensus       149 ~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~  228 (293)
                      ||+.+|..+++|+||||+| ++|||||.+| +|+|+|+|++|++||++ + +|+                 .+..|+++|
T Consensus       207 ~~~~~~~~~~~p~L~gldG-~~KMSKS~~n-aI~L~dsp~~i~~Ki~~-~-~D~-----------------~v~~~~~~~  265 (343)
T d1h3fa1         207 YGQSPQVCFLMPLLVGLDG-REKMSKSLDN-YIGLTEPPEAMFKKLMR-V-PDP-----------------LLPSYFRLL  265 (343)
T ss_dssp             TTCCCCEEEEECCCBCTTS-SSBCCGGGTC-CCBTTSCHHHHHHHHHT-S-CGG-----------------GHHHHHHHH
T ss_pred             cCccccceeeccccccccc-cchhhccccc-ceeeechhHHHHHHHhc-C-Ccc-----------------chhhHHHHc
Confidence            9999999999999999999 4799999765 99999999999999999 5 321                 234677777


Q ss_pred             ecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHH
Q 022694          229 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER  266 (293)
Q Consensus       229 ~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~p  266 (293)
                      +.  .+.++|++.+..   ++.++|+.||+.|+..++.
T Consensus       266 t~--~~~~ei~~~~~~---~~~~~k~~La~~i~~~~~~  298 (343)
T d1h3fa1         266 TD--LEEEEIEALLKA---GPVPAHRVLARLLTAAYAL  298 (343)
T ss_dssp             CC--CCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHS
T ss_pred             cC--CCHHHHHHHHHh---CCHHHHHHHHHHHHHHHcC
Confidence            43  234555555543   4789999999999988864

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=7.2e-31  Score=241.54  Aligned_cols=233  Identities=13%  Similarity=0.132  Sum_probs=182.7

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhc--------c-cChHHHHHHHHhcccchhhc-c-cCCCceeEeecccccchhhh
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWK--------N-LSVEESQRLARENAKDIIAC-G-FDVTKTFIFSDFDYVGGAFY   70 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~--------~-~~~~~i~~~~~~~~~~~lA~-G-ldp~k~~i~~qs~~~~~~~~   70 (293)
                      ++ +|||+ +|+.++++|+|+||++++        + .+.+++.+|+..+..++... . .++.++.+..+++|.....+
T Consensus        55 ~l-~~~q~-~Gh~~i~LiG~~T~~iGDPsgk~~~R~~l~~~~i~~n~~~~~~~~~~~~~~~~~~~~~i~~n~~w~~~~~~  132 (323)
T d1jila_          55 TL-RRFQE-HGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISL  132 (323)
T ss_dssp             HH-HHHHH-TTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHHSCCSSSSSCEEEETHHHHTTCCH
T ss_pred             HH-HHHHH-hCCceEEeehhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhhhhhhhcccccceEEechhhhhccchH
Confidence            56 89999 599999999999999975        2 67788988887665554432 1 24567888888888765444


Q ss_pred             hhHH-hhhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccC----CCCccceeccccccCCccccc
Q 022694           71 KNMV-KVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFS----GKDHLRCLIPCAIDQDPYFRM  141 (293)
Q Consensus        71 ~~~~-~l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~----~~ad~~~~vpvG~DQ~~~~~l  141 (293)
                      .+++ .++++++++++.++..+    ..+.++.+|+||+||+.        |++.    +++|   +..||.||++++..
T Consensus       133 ~~~l~~~~~~~~v~~ml~~d~~~~R~~~~is~~Ef~YpllQ~~--------Df~~l~~~~~~~---iqiGGsDQ~~Ni~~  201 (323)
T d1jila_         133 ISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITS  201 (323)
T ss_dssp             HHHHHHTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHhHHHHHHhcccccHhhHHHHHHHHH--------HHHHHHHHhhch---hhhhccccHHHhhh
Confidence            4444 47788888887765322    35578999999999999        6654    5665   46899999999999


Q ss_pred             ccccCCcc-CCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCee
Q 022694          142 TRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE  217 (293)
Q Consensus       142 aRdia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~  217 (293)
                      +||+++|+ |.+++.+++.|++.+++|  +|||||.+| +|+|.+   ||+++++|+++ .      ++           
T Consensus       202 Grdl~~~~~~~~~~~~it~pLl~~~~G--~Km~KS~~n-~i~l~~~~tsP~~~y~k~~n-~------~D-----------  260 (323)
T d1jila_         202 GIELMRRMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q------SD-----------  260 (323)
T ss_dssp             HHHHHHHHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C------CH-----------
T ss_pred             hhhhhhhhcccccceEEecccccchhh--hhhhhcCCC-CeeeecccCChHHHHHHhhc-C------CH-----------
Confidence            99999997 555667778999999988  799999876 999987   79999999999 3      11           


Q ss_pred             eeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 022694          218 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA  270 (293)
Q Consensus       218 ~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~  270 (293)
                       +.+..|+++|+. +.+++++|++.+..| .+|.++|+.||+.|+.++++-.+.
T Consensus       261 -~~i~~yl~~~T~l~~~ei~~l~~~~~~~-~~pr~~Kk~LA~ei~~~~HG~~~a  312 (323)
T d1jila_         261 -EDVIKFLKYFTFLGKEEIDRLEQSKNEA-PHLREAQKTLAEEVTKFIHGEDAL  312 (323)
T ss_dssp             -HHHHHHHHHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHCHHHH
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHCCHHHH
Confidence             234567777764 678899999998866 599999999999999999874443

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=99.94  E-value=4.3e-29  Score=228.99  Aligned_cols=235  Identities=14%  Similarity=0.129  Sum_probs=188.5

Q ss_pred             cchHHHHhhcCCcEEEEeecccchhhc--------c-cChHHHHHHHH---hcccchhhcccCCCceeEeecccccch-h
Q 022694            2 FTNRYLQDAFKVPLVIQLTDDEKCMWK--------N-LSVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGG-A   68 (293)
Q Consensus         2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~--------~-~~~~~i~~~~~---~~~~~~lA~Gldp~k~~i~~qs~~~~~-~   68 (293)
                      ++ +|||+ +|+.++++|+|.|+++++        + .+.+.+++|+.   +.+..+++.+.+++++.|+.+++|... .
T Consensus        54 ~l-~~~q~-~Gh~~i~LiG~~T~~IGDPsgk~~eR~~l~~e~i~~n~~~~~~q~~~~~~~~~~~~~~~iv~N~~w~~~~~  131 (319)
T d2ts1a_          54 TM-RRFQQ-AGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLD  131 (319)
T ss_dssp             HH-HHHHH-TTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCC
T ss_pred             HH-HHHHH-cCCceeEEeeehhhccCCCcccchhhhcCCHHHHHHHHHHHHHHHHHhhcccccccccceeehHHHHhhHH
Confidence            56 99999 599999999999999975        2 66778888775   555566788888999999999998755 3


Q ss_pred             hhhhHHhhhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCcccc
Q 022694           69 FYKNMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFR  140 (293)
Q Consensus        69 ~~~~~~~l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~  140 (293)
                      ++..+..+++.+|++++.++..+    ..+.++++|+||+|||.        |.+.+    +++   +..||.||+.++.
T Consensus       132 ~~~~l~~~g~~~tv~~ml~rd~v~~R~~~~is~~Ef~Y~llQay--------Df~~l~~~~~~~---~qiGGsDQ~gNi~  200 (319)
T d2ts1a_         132 VITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNIT  200 (319)
T ss_dssp             HHHHHHHTGGGCCHHHHHTSHHHHTTTTTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHH
T ss_pred             HHHHHHHHccccchhhhhhhHHHHHhcccCcchhhhHHHHHHHH--------HHHHHhhccCCc---hhhccchhhhHHH
Confidence            33444458888888887766321    35678899999999999        77766    564   5689999999999


Q ss_pred             cccccCCccCC-CCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCe
Q 022694          141 MTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANL  216 (293)
Q Consensus       141 laRdia~r~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p  216 (293)
                      .+|++.++++. +++..++.|+|+|.+|  +|||||.+| +|+|++   ||.++++|+++ .      ++          
T Consensus       201 ~G~dli~~~~~~~~~~~lT~PLL~~~~G--~K~~ks~~n-~i~l~~~~tsp~~~yq~~~n-~------~D----------  260 (319)
T d2ts1a_         201 AGLELIRKTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T------DD----------  260 (319)
T ss_dssp             HHHHHHHHHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C------CH----------
T ss_pred             HHHHHHHHhcccccceEeeccccccccc--ceeeecCCC-CcccccccCCHHHHHHHhcC-C------CH----------
Confidence            99999998754 4456688999999998  699999875 899976   79999999999 2      11          


Q ss_pred             eeeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 022694          217 EVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  272 (293)
Q Consensus       217 ~~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~  272 (293)
                        +.+..|+++|+. +.+++++|.+.+.+| -++.++|+.||+.|+.+++.-..-.+
T Consensus       261 --~~v~~yl~~~T~~~~eeI~~i~~~~~~~-~~~r~~K~~LA~eit~l~HG~~~a~~  314 (319)
T d2ts1a_         261 --RDVIRYLKYFTFLSKEEIEALEQELREA-PEKRAAQKTLAEEVTKLVHGEEALRQ  314 (319)
T ss_dssp             --HHHHHHHHHHCCCCHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence              234578888764 678999999998888 49999999999999999998665443

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.97  E-value=0.0065  Score=55.76  Aligned_cols=59  Identities=27%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             CCCCccceeccccccCCcc---cccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694          120 SGKDHLRCLIPCAIDQDPY---FRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       120 ~~~ad~~~~vpvG~DQ~~~---~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      .+.+|   +...|.||...   ..+..-++ -.|.+++ .++.+.+|...+|  +|||||.+| .|...|
T Consensus       352 ~~P~d---~~~~G~Di~r~w~~~~~~~~~~-~~~~~Pfk~v~~hG~vld~~G--~KMSKS~GN-~I~p~d  414 (450)
T d1ffya3         352 SFPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPDQ  414 (450)
T ss_dssp             CSSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCHHH
T ss_pred             cCCCc---ccccCcchhhHHHHHHHHHHHH-hcCCCCcceEEEcceEECCCC--CCCCCCCCC-CcCHHH
Confidence            34555   46789999542   11221111 1233333 3445778877787  799999987 776543

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=91.20  E-value=0.016  Score=51.92  Aligned_cols=53  Identities=19%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             eccccccCCcccc---cccccCCccCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694          128 LIPCAIDQDPYFR---MTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       128 ~vpvG~DQ~~~~~---laRdia~r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +..+|.|+..++-   ++.-.+- ++ ..|  .++.+.++...+|  +|||||.+| .|.+.|
T Consensus       331 i~~~G~Di~~~h~~~~~a~~~~~-~~-~~p~~~v~~hg~~L~~~G--~KMSKS~Gn-~I~~~e  388 (425)
T d1ivsa4         331 VLVTGYDILFLWVSRMEVSGYHF-MG-ERPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE  388 (425)
T ss_dssp             CEEEEGGGTTTTHHHHHHHHHHH-SS-SCSBSEEEEECCEECTTS--SBCBTTTTB-CCCHHH
T ss_pred             EEEEEehhhhHHHHHHHHHHHHh-cC-CCccceEEEcceEECCCC--CCcCCCCCC-CcCHHH
Confidence            3567899765542   1111111 12 233  2334567666677  799999987 887644

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.12  E-value=0.019  Score=48.10  Aligned_cols=35  Identities=34%  Similarity=0.584  Sum_probs=16.2

Q ss_pred             cCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694          149 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       149 ~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      ++.+.|.++++.+| .|+|.++|||||.+| .|.+.|
T Consensus       256 ~g~~~~~~~~~~~l-~l~ge~~KMSkrkGn-~I~~~d  290 (317)
T d1irxa2         256 YGKEAPLSLMYEFV-GIKGQKGKMSGSKGN-VILLSD  290 (317)
T ss_dssp             HCCCCCBCCEECCE-EESCC---------C-CCCHHH
T ss_pred             cCCCCcEEEEEEEE-EECCccccccCCCCc-cccHHH
Confidence            45567777666543 456656799999987 887654

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=0.019  Score=49.55  Aligned_cols=68  Identities=16%  Similarity=0.097  Sum_probs=39.1

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhh
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  196 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k  196 (293)
                      |+|.-|.|....-..=+.|.+.||.+.|...|.|+|.+.+|  +||||++....|.-.+.+.-+.+-++.
T Consensus       183 ThViRG~D~l~st~~Q~~L~~~lg~~~P~y~H~pli~~~~g--~KLSKr~~~~~i~~~~~~~~~~~~L~~  250 (286)
T d1nzja_         183 TEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPVLIAALQF  250 (286)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHHHHHHHHH
T ss_pred             ceecccccccchHHHHHHHHHhhCCCccceeecceEEccCC--cccccccCccchhcCCccHHHHHHHHH
Confidence            68999999765544445566788999999999999999988  799999864455444555555544444

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=90.17  E-value=0.014  Score=52.69  Aligned_cols=53  Identities=25%  Similarity=0.134  Sum_probs=30.4

Q ss_pred             eccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694          128 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  184 (293)
Q Consensus       128 ~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~  184 (293)
                      +...|.||..   |..+..-++- +|..+| .++.+.++..++|  +|||||.+| .|.+.
T Consensus       358 ~~~~g~d~~~~~fh~l~~~~~l~-~~~~~~~~v~~hg~iL~~~G--~KMSKS~gn-~I~~~  414 (452)
T d1ilea3         358 FIAEGIDQTRGWFNSLHQLGVML-FGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPW  414 (452)
T ss_dssp             BEEEEGGGGGTHHHHHHHHHHHH-HSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHH
T ss_pred             hheecCceechhhHHHHHhHHHH-cCCCCCCeEEEeeEEECCCC--cccCCCCCC-CcCHH
Confidence            3567888863   2222211111 222223 3445777777787  799999987 77553

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=89.73  E-value=0.052  Score=46.72  Aligned_cols=29  Identities=24%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             cccccccccccccCCccccccCCCCceeeecc
Q 022694          154 PALIESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       154 p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      +.++.+.++-.++|  +|||||.+| .|.+.|
T Consensus       282 ~~v~~~~~~l~~~G--~KMSKS~Gn-~i~~~e  310 (348)
T d2d5ba2         282 RHLNVGGFLLGPDG--RKMSKTLGN-VVDPFA  310 (348)
T ss_dssp             SEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred             CEEEeCceEEcccC--CCCcCCCCc-ccCHHH
Confidence            34445566667787  699999987 887754

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=88.81  E-value=0.032  Score=48.40  Aligned_cols=51  Identities=10%  Similarity=0.045  Sum_probs=41.6

Q ss_pred             eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCc
Q 022694          127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS  179 (293)
Q Consensus       127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s  179 (293)
                      |+|.-|.|-..+-..=+-+.+.+|.+.|...+.|++...+|  +||||++...
T Consensus       201 thviRG~Dl~~~t~~q~~l~~~Lg~~~p~~~h~~l~~~~~g--~KLSKr~~~~  251 (305)
T d1j09a2         201 TDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDK--TKISKRKSHT  251 (305)
T ss_dssp             CEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--CBCCTTTSCC
T ss_pred             ccccccccceeccHHHHHHHHhhcCCCCceeeecccccCcc--ccccccCCcc
Confidence            58899999777665556677788999999999999999988  7999998643

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=83.73  E-value=0.16  Score=43.71  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=16.7

Q ss_pred             cccccccccCCccccccCCCCceeeecc
Q 022694          158 ESSFFPALQGETGKMSASDPNSAIYVTD  185 (293)
Q Consensus       158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D  185 (293)
                      ++.+|- ++|  +|||||.+| .|.+.|
T Consensus       284 ~~g~l~-~~G--~KMSKS~GN-~i~~~d  307 (350)
T d1pfva2         284 VHGYVT-VNG--AKMSKSRGT-FIKAST  307 (350)
T ss_dssp             EECCEE-ETT--BSCCTTTTC-CCBHHH
T ss_pred             ecccEE-ECC--eEccCcCCC-CCCHHH
Confidence            345553 676  799999987 776643

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=83.22  E-value=0.089  Score=46.62  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             eccccccCCcccccccccCCccCCCCc----ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhh
Q 022694          128 LIPCAIDQDPYFRMTRDVAPRIGYHKP----ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  196 (293)
Q Consensus       128 ~vpvG~DQ~~~~~laRdia~r~n~~~p----~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k  196 (293)
                      +--+|.+|..|+.....+++.+|++..    .++...+|- ++|  +||||..++ .|.|.|==+++.++.+.
T Consensus       254 iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~-~~g--~kMStR~G~-~v~l~dll~ea~~~a~~  322 (370)
T d1iq0a2         254 INVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDEVLEEATRRARA  322 (370)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCCchhhceeeEEEEEEe-cCC--ccccccCCC-eeEHHHHHHHHHHHHHH
Confidence            347899999999999999999998432    233334443 455  799999886 89987755555444443