Citrus Sinensis ID: 023032

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MAASFSSLSFFSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVEFEGDGDEEEEESEAREAGEESDAAE
ccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHcccccccEEEEEEccccHHHHHHHccccccEEEccccccHHHHcccccEEEcHHHHHHHHHHHccccccccccHHHHHHHHHccccccccc
ccccHcEEEEcccEEEEcccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEcHHHccccccHHHHHHHHHHHHHHHHcccccccccccEccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHcccEEEEHHHHHHcccccHHHHHHHHHHcccccccEEEEEEcccccHHHHHHccccccEEEEcccEEEEEHHcccEEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccc
maasfsslsffsstifltsssnkvpkpiqlakpnslinlppkplivssqlasplpilsftgeKIGETYLdlksaapdTARAVVHRALITDMqnkrrgtastltrgevrgggrkpysqkktgrarrgsnrtplrpgggvvfgpkprdwsikiNKKEKRLAISTAIASAAAAENTIVveefdgkferpkTKEFIEAMRrwgldpkqKATFLVMEVSENvekssrnigtlkmltprtlnlfdildaetlvltpstvdflngrygvefegdgdeeeeeseareageesdaae
maasfsslsffSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALitdmqnkrrgtastltrgevrgggrkpysqkktgrarrgsnrtplrpgggvvfgpkprdwsIKINKKEKRLAISTAIasaaaaentivveefdgkferpkTKEFIEAMRRWGLDPKQKATFLVMEVSenvekssrnigtlkmltPRTLNLFDILDAETLvltpstvdflngrYGVEfegdgdeeeeeseareageesdaae
MAAsfsslsffsstifltsssNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLaistaiasaaaaENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVefegdgdeeeeeseareageesdaae
**********FSSTIFL*******************INL***PLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALIT************************************************VVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENV****RNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVEF************************
**********FSSTIFLTS*****************************QLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR*****************************
MAASFSSLSFFSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTL**************************RTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVEF************************
******SLSFFSSTIFLTSSSNKVPKPIQLA*PNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKR*********************************RTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGV**************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAASFSSLSFFSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVEFEGDGDEEEEESEAREAGEESDAAE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
O50061282 50S ribosomal protein L4, yes no 0.767 0.783 0.784 6e-93
O80361282 50S ribosomal protein L4, N/A no 0.739 0.755 0.768 2e-91
O49937293 50S ribosomal protein L4, N/A no 0.725 0.713 0.720 1e-87
Q8DMN0210 50S ribosomal protein L4 yes no 0.697 0.957 0.512 4e-54
B8HMQ5210 50S ribosomal protein L4 yes no 0.708 0.971 0.504 3e-53
Q110A8212 50S ribosomal protein L4 yes no 0.708 0.962 0.495 7e-53
B2ITQ4212 50S ribosomal protein L4 yes no 0.697 0.948 0.487 4e-52
P73319210 50S ribosomal protein L4 N/A no 0.708 0.971 0.495 8e-52
B7KHY8210 50S ribosomal protein L4 yes no 0.666 0.914 0.505 1e-51
B7K334211 50S ribosomal protein L4 yes no 0.704 0.962 0.478 4e-51
>sp|O50061|RK4_ARATH 50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2 Back     alignment and function desciption
 Score =  340 bits (872), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 175/223 (78%), Positives = 202/223 (90%), Gaps = 2/223 (0%)

Query: 42  KPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTAST 101
           KPL VSSQLA+ LPILSF GEK+GETYLDLK+A  DTARAVVHRA++TD+ NKRRGTAST
Sbjct: 43  KPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTAST 101

Query: 102 LTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAIS 161
           LTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+LAIS
Sbjct: 102 LTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAIS 161

Query: 162 TAIASAAAAE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKS 220
           TA++SAA+AE   IVVEEF  KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KS
Sbjct: 162 TALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKS 221

Query: 221 SRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 263
           SRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN RYGV+
Sbjct: 222 SRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARYGVD 264
This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation.
Arabidopsis thaliana (taxid: 3702)
>sp|O80361|RK4_TOBAC 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1 Back     alignment and function description
>sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1 Back     alignment and function description
>sp|Q8DMN0|RL4_THEEB 50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1 Back     alignment and function description
>sp|B8HMQ5|RL4_CYAP4 50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1 Back     alignment and function description
>sp|Q110A8|RL4_TRIEI 50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1 Back     alignment and function description
>sp|B2ITQ4|RL4_NOSP7 50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1 Back     alignment and function description
>sp|P73319|RL4_SYNY3 50S ribosomal protein L4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplD PE=3 SV=1 Back     alignment and function description
>sp|B7KHY8|RL4_CYAP7 50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1 Back     alignment and function description
>sp|B7K334|RL4_CYAP8 50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
449450794288 PREDICTED: 50S ribosomal protein L4, chl 0.902 0.902 0.721 1e-103
255569265283 50S ribosomal protein L4, putative [Rici 0.815 0.830 0.757 2e-97
224092093279 predicted protein [Populus trichocarpa] 0.826 0.853 0.747 3e-96
297843518280 hypothetical protein ARALYDRAFT_470751 [ 0.767 0.789 0.766 4e-96
147856052306 hypothetical protein VITISV_028922 [Viti 0.826 0.777 0.735 4e-95
30680078280 50S ribosomal protein L4 [Arabidopsis th 0.767 0.789 0.784 4e-91
18390754282 50S ribosomal protein L4 [Arabidopsis th 0.767 0.783 0.784 4e-91
79317138278 50S ribosomal protein L4 [Arabidopsis th 0.767 0.794 0.784 4e-91
2791998282 ribosomal protein L4 [Arabidopsis thalia 0.767 0.783 0.780 2e-90
21537296282 ribosomal protein L4 [Arabidopsis thalia 0.767 0.783 0.780 2e-90
>gi|449450794|ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Cucumis sativus] gi|449496602|ref|XP_004160176.1| PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/266 (72%), Positives = 226/266 (84%), Gaps = 6/266 (2%)

Query: 1   MAASFS--SLSFFSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILS 58
           MA S S  SLSFF+S++FL+S S++       +KPNSL     K L +SS+LA+ LP+LS
Sbjct: 1   MATSISPSSLSFFTSSVFLSSPSHQNLNLFFNSKPNSL-KPQTKTLSISSELAT-LPVLS 58

Query: 59  FTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQK 118
           FTG+K+GETYLDLKSA P+TARAVVHRA+ITD QNKRRGTASTLTR EV GGG+KPY QK
Sbjct: 59  FTGQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYKQK 118

Query: 119 KTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEE 178
           KTGRARRGS RTPLRPGGGVVFGPKPRDWSIKIN+KEK+LAISTA+ASAA   NTIVVEE
Sbjct: 119 KTGRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAISTAVASAAV--NTIVVEE 176

Query: 179 FDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLF 238
           F  KFE+PKTKEFI A++RWG+DPK+K+ FL+ EVS+NV  SSRNIGTLK+LTPRTLNLF
Sbjct: 177 FGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLF 236

Query: 239 DILDAETLVLTPSTVDFLNGRYGVEF 264
           DILD++ LVLTP+ VD+LN RYG+ +
Sbjct: 237 DILDSDKLVLTPTAVDYLNERYGINY 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569265|ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis] gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224092093|ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|222855445|gb|EEE92992.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297843518|ref|XP_002889640.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp. lyrata] gi|297335482|gb|EFH65899.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147856052|emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30680078|ref|NP_849604.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|332189986|gb|AEE28107.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18390754|ref|NP_563786.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|21542429|sp|O50061.2|RK4_ARATH RecName: Full=50S ribosomal protein L4, chloroplastic; AltName: Full=CL4; AltName: Full=R-protein L4; Flags: Precursor gi|17380866|gb|AAL36245.1| unknown protein [Arabidopsis thaliana] gi|21436209|gb|AAM51392.1| unknown protein [Arabidopsis thaliana] gi|110741117|dbj|BAE98652.1| hypothetical protein [Arabidopsis thaliana] gi|332189985|gb|AEE28106.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79317138|ref|NP_001030985.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|79317147|ref|NP_001030986.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|8778555|gb|AAF79563.1|AC022464_21 F22G5.34 [Arabidopsis thaliana] gi|222423413|dbj|BAH19678.1| AT1G07320 [Arabidopsis thaliana] gi|332189987|gb|AEE28108.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|332189988|gb|AEE28109.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2791998|emb|CAA74895.1| ribosomal protein L4 [Arabidopsis thaliana] gi|2792000|emb|CAA74894.1| ribosomal protein L4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21537296|gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2025107282 RPL4 "ribosomal protein L4" [A 0.826 0.843 0.703 4.3e-86
UNIPROTKB|Q3A9R7206 rplD "50S ribosomal protein L4 0.677 0.946 0.398 8.8e-31
TIGR_CMR|CHY_2308206 CHY_2308 "ribosomal protein L4 0.677 0.946 0.398 8.8e-31
TIGR_CMR|BA_0111207 BA_0111 "ribosomal protein L4" 0.663 0.922 0.389 7.9e-30
TIGR_CMR|DET_0475210 DET_0475 "ribosomal protein L4 0.680 0.933 0.35 3.6e-25
TIGR_CMR|GSU_2856207 GSU_2856 "ribosomal protein L4 0.694 0.966 0.307 4.2e-24
UNIPROTKB|P60729223 rplD "50S ribosomal protein L4 0.583 0.753 0.372 3.4e-22
TIGR_CMR|CPS_0872201 CPS_0872 "ribosomal protein L4 0.600 0.860 0.348 3.4e-22
TIGR_CMR|CBU_0239205 CBU_0239 "ribosomal protein L4 0.694 0.975 0.323 1.5e-21
UNIPROTKB|Q32PI6294 MRPL4 "39S ribosomal protein L 0.774 0.758 0.323 1.7e-20
TAIR|locus:2025107 RPL4 "ribosomal protein L4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 171/243 (70%), Positives = 199/243 (81%)

Query:    22 NKVPKP-IQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTAR 80
             +++PK  I ++K  S      KPL VSSQLA+ LPILSF GEK+GETYLDLK+A  DTAR
Sbjct:    24 HQIPKTYISVSKLGS--GRVSKPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTAR 80

Query:    81 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVF 140
             AVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVF
Sbjct:    81 AVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVF 140

Query:   141 GPKPRDWSIKINKKEKRLXXXXXXXXXXXXEN-TIVVEEFDGKFERPKTKEFIEAMRRWG 199
             GP+P+DWSIKIN+KEK+L            E   IVVEEF  KFE+PKTK+F+ AM+RWG
Sbjct:   141 GPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWG 200

Query:   200 LDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR 259
             LDPK+KA FL+++V ENV KSSRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN R
Sbjct:   201 LDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNAR 260

Query:   260 YGV 262
             YGV
Sbjct:   261 YGV 263
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0008266 "poly(U) RNA binding" evidence=IDA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0000311 "plastid large ribosomal subunit" evidence=TAS
GO:0009547 "plastid ribosome" evidence=IPI
UNIPROTKB|Q3A9R7 rplD "50S ribosomal protein L4" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2308 CHY_2308 "ribosomal protein L4" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0111 BA_0111 "ribosomal protein L4" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0475 DET_0475 "ribosomal protein L4" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2856 GSU_2856 "ribosomal protein L4" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P60729 rplD "50S ribosomal protein L4" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0872 CPS_0872 "ribosomal protein L4" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0239 CBU_0239 "ribosomal protein L4" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PI6 MRPL4 "39S ribosomal protein L4, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O50061RK4_ARATHNo assigned EC number0.78470.76730.7836yesno
Q8DMN0RL4_THEEBNo assigned EC number0.51230.69790.9571yesno
B8HMQ5RL4_CYAP4No assigned EC number0.50480.70830.9714yesno
B7KHY8RL4_CYAP7No assigned EC number0.50510.66660.9142yesno
O49937RK4_SPIOLNo assigned EC number0.72030.72560.7133N/Ano
O80361RK4_TOBACNo assigned EC number0.76850.73950.7553N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.1__705__AT1G07320.2
annotation not avaliable (280 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.6__3575__AT4G01310.1
annotation not avaliable (264 aa)
• ••• • 0.991
fgenesh2_kg.1__3924__AT1G48350.1
annotation not avaliable (170 aa)
• ••• • 0.990
fgenesh2_kg.1__466__AT1G05190.1
annotation not avaliable (223 aa)
•  •• • 0.989
fgenesh2_kg.4__2465__AT2G43030.1
annotation not avaliable (271 aa)
•  •• • 0.987
fgenesh1_pg.C_scaffold_1061000001
annotation not avaliable (103 aa)
•  •  • 0.971
Al_scaffold_0002_934
annotation not avaliable (274 aa)
• ••• • 0.966
fgenesh1_pg.C_scaffold_4000116
annotation not avaliable (224 aa)
•  •  • 0.965
Al_scaffold_0002_938
annotation not avaliable (135 aa)
•  •• • 0.964
Al_scaffold_0001_5263
annotation not avaliable (135 aa)
•  •• • 0.964
fgenesh1_pm.C_scaffold_2000597
annotation not avaliable (269 aa)
• ••• • 0.963

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
PRK05319205 PRK05319, rplD, 50S ribosomal protein L4; Provisio 4e-77
pfam00573190 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 f 1e-73
TIGR03953188 TIGR03953, rplD_bact, 50S ribosomal protein L4, ba 1e-70
CHL00147215 CHL00147, rpl4, ribosomal protein L4; Validated 2e-69
COG0088214 COG0088, RplD, Ribosomal protein L4 [Translation, 4e-57
PRK14547298 PRK14547, rplD, 50S ribosomal protein L4; Provisio 3e-46
PRK14907295 PRK14907, rplD, 50S ribosomal protein L4; Provisio 1e-29
PRK04042254 PRK04042, rpl4lp, 50S ribosomal protein L4P; Provi 6e-07
TIGR03672251 TIGR03672, rpl4p_arch, 50S ribosomal protein L4P 1e-05
>gnl|CDD|235404 PRK05319, rplD, 50S ribosomal protein L4; Provisional Back     alignment and domain information 
 Score =  233 bits (596), Expect = 4e-77
 Identities = 85/208 (40%), Positives = 127/208 (61%), Gaps = 5/208 (2%)

Query: 54  LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
           L +L+  G++ GE  L       +   A++H+ ++  + N R+GT +T TR EV GGG+K
Sbjct: 3   LKVLNLDGKEAGEVELSDAVFGVEPNEALLHQVVVAQLANARQGTHATKTRSEVSGGGKK 62

Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
           P+ QK TGRAR+GS R+P   GGGVVFGPKPRD+S K+NKK +RLA+ +A++  A     
Sbjct: 63  PWRQKGTGRARQGSIRSPQWRGGGVVFGPKPRDYSQKLNKKVRRLALRSALSEKAREGRL 122

Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
           +VV++     E PKTKE    ++  GL    K   +  EV EN+  S+RN+  + +L  +
Sbjct: 123 VVVDDL--SLEAPKTKELAAKLKNLGLK---KVLIVTDEVDENLYLSARNLPNVDVLPAQ 177

Query: 234 TLNLFDILDAETLVLTPSTVDFLNGRYG 261
            LN++D+L A+ +VLT + V  L  R  
Sbjct: 178 GLNVYDLLRADKVVLTKAAVKKLEERLA 205

Length = 205
>gnl|CDD|215999 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family Back     alignment and domain information
>gnl|CDD|234414 TIGR03953, rplD_bact, 50S ribosomal protein L4, bacterial/organelle Back     alignment and domain information
>gnl|CDD|214375 CHL00147, rpl4, ribosomal protein L4; Validated Back     alignment and domain information
>gnl|CDD|223166 COG0088, RplD, Ribosomal protein L4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|184735 PRK14547, rplD, 50S ribosomal protein L4; Provisional Back     alignment and domain information
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional Back     alignment and domain information
>gnl|CDD|235211 PRK04042, rpl4lp, 50S ribosomal protein L4P; Provisional Back     alignment and domain information
>gnl|CDD|234305 TIGR03672, rpl4p_arch, 50S ribosomal protein L4P Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
CHL00147215 rpl4 ribosomal protein L4; Validated 100.0
PRK05319205 rplD 50S ribosomal protein L4; Provisional 100.0
PRK14547298 rplD 50S ribosomal protein L4; Provisional 100.0
PRK14907295 rplD 50S ribosomal protein L4; Provisional 100.0
PF00573192 Ribosomal_L4: Ribosomal protein L4/L1 family; Inte 100.0
KOG1624290 consensus Mitochondrial/chloroplast ribosomal prot 100.0
COG0088214 RplD Ribosomal protein L4 [Translation, ribosomal 100.0
PRK04042254 rpl4lp 50S ribosomal protein L4P; Provisional 100.0
TIGR03672251 rpl4p_arch 50S ribosomal protein L4P. One of the p 100.0
PLN00185 405 60S ribosomal protein L4-1; Provisional 100.0
PTZ00428381 60S ribosomal protein L4; Provisional 100.0
KOG1475363 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA p 99.97
PTZ00428 381 60S ribosomal protein L4; Provisional 93.94
>CHL00147 rpl4 ribosomal protein L4; Validated Back     alignment and domain information 
Probab=100.00  E-value=1.7e-73  Score=514.30  Aligned_cols=206  Identities=42%  Similarity=0.718  Sum_probs=195.9

Q ss_pred             CceeeccCCCe-EeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCC
Q 023032           53 PLPILSFTGEK-IGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTP  131 (288)
Q Consensus        53 ~v~V~~~~G~~-~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP  131 (288)
                      +++|+|++|+. +|+++|++.+| .+++.++||++|+||++++|||||+||||+||+||||||||||||||||+||+|||
T Consensus         8 ~~~v~~~~g~~~~~~~~l~~~vf-~~~~~~ll~~~v~~~~a~~R~gt~~tKtR~eV~G~grKp~~QKGTGrAR~Gs~rsP   86 (215)
T CHL00147          8 NYPVIDLTGKEKSETIKLKLNVL-EKSGNYLLHRALVRQNNNQRQGTASTKTRSEVRGGGRKPWKQKGTGRARAGSNRSP   86 (215)
T ss_pred             eEEEEccCCCeecceEEeCHHHh-CCchHhHHHHHHHHHHHHHhhcccccCccccccCCCCCCcccCCCCccCCCCCcCC
Confidence            79999999999 89999999999 55779999999999999999999999999999999999999999999999999999


Q ss_pred             CccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEe
Q 023032          132 LRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM  211 (288)
Q Consensus       132 ~~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~  211 (288)
                      +|||||+||||+||||+++||||+|++||++|||++.  ++++|||++...++.||||+++++|+++|++.++++|||++
T Consensus        87 ~~rgGG~afgP~pR~y~~klnKKvrrlAl~sALS~k~--~~l~VVd~~~~~~~~~KTK~~~~~L~~l~~~~~~~~L~V~~  164 (215)
T CHL00147         87 LWKGGGVIFGPKPKTYSNKLNKKERRLALRTLLYNKS--NNITVVENFESSITNPKTKAFINLLKKLNINLDQKILIIVP  164 (215)
T ss_pred             cccCCEeecCCCCcchhhhcCHHHHHHHHHHHHHHhh--CCeEEEcccccccCCCCHHHHHHHHHHcCCCcCCceEEEEC
Confidence            9999999999999999999999999999999999995  68999999864478899999999999999853457999998


Q ss_pred             ccchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHHHHHHHHhhC
Q 023032          212 EVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG  261 (288)
Q Consensus       212 ~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~  261 (288)
                      +.++|+++|+||||+|+++++++|||||||++++||||++|+++|+++|+
T Consensus       165 ~~~~nl~~S~rNlp~V~v~~~~~lNv~dLL~~~~vvit~~Al~~lee~~~  214 (215)
T CHL00147        165 EKTENLYLSTRNLKNVELISADTLNIKSLLKAKQIIITKEALKIIEEVYN  214 (215)
T ss_pred             CCchHHHHHHhCCCCcEEEecCCccHHHHhcCCcEEEEHHHHHHHHHHhc
Confidence            88899999999999999999999999999999999999999999999985

>PRK05319 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>PRK14547 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>PRK14907 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1624 consensus Mitochondrial/chloroplast ribosomal protein L4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional Back     alignment and domain information
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P Back     alignment and domain information
>PLN00185 60S ribosomal protein L4-1; Provisional Back     alignment and domain information
>PTZ00428 60S ribosomal protein L4; Provisional Back     alignment and domain information
>KOG1475 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA processing and modification] Back     alignment and domain information
>PTZ00428 60S ribosomal protein L4; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3bbo_G293 Homology Model For The Spinach Chloroplast 50s Subu 3e-82
2j01_F210 Structure Of The Thermus Thermophilus 70s Ribosome 2e-24
3pyo_E202 Crystal Structure Of A Complex Containing Domain 3 2e-24
3tve_F202 Crystal Structure Analysis Of Ribosomal Decoding. T 2e-24
3d5b_F210 Structural Basis For Translation Termination On The 2e-24
3uxq_F205 The Structure Of Thermorubin In Complex With The 70 2e-24
1vsa_D205 Crystal Structure Of A 70s Ribosome-Trna Complex Re 2e-24
3fin_F208 T. Thermophilus 70s Ribosome In Complex With Mrna, 3e-24
1vor_F198 Crystal Structure Of Five 70s Ribosomes From Escher 3e-23
1pnu_C197 Crystal Structure Of A Streptomycin Dependent Ribos 4e-23
1dmg_A225 Crystal Structure Of Ribosomal Protein L4 Length = 4e-23
1nwx_C204 Complex Of The Large Ribosomal Subunit From Deinoco 8e-23
1jzx_K205 Structural Basis For The Interaction Of Antibiotics 8e-23
1p85_C201 Real Space Refined Coordinates Of The 50s Subunit F 8e-19
2gya_C198 Structure Of The 50s Subunit Of A Pre-Translocation 8e-19
2ftc_D175 Structural Model For The Large Subunit Of The Mamma 6e-18
>pdb|3BBO|G Chain G, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 293 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (770), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 172/210 (81%), Gaps = 2/210 (0%)
Query: 53  PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGR 112
           PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGR
Sbjct: 54  PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGR 113
Query: 113 KPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXEN 172
           KPY QKKTGRARRGS  +PLRPGGGV+FGPKPRDW+IK+NKKE+RL             N
Sbjct: 114 KPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--N 171
Query: 173 TIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTP 232
           + VVEEF   FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTP
Sbjct: 172 SFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTP 231
Query: 233 RTLNLFDILDAETLVLTPSTVDFLNGRYGV 262
           R+LNLFD+L+AE LV T  T+ +LN RYGV
Sbjct: 232 RSLNLFDVLNAEKLVFTEGTIQYLNQRYGV 261
>pdb|2J01|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 210 Back     alignment and structure
>pdb|3PYO|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 202 Back     alignment and structure
>pdb|3TVE|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 202 Back     alignment and structure
>pdb|3D5B|F Chain F, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 210 Back     alignment and structure
>pdb|3UXQ|F Chain F, The Structure Of Thermorubin In Complex With The 70s Ribosome From Thermus Thermophilus. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 205 Back     alignment and structure
>pdb|1VSA|D Chain D, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 205 Back     alignment and structure
>pdb|3FIN|F Chain F, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 208 Back     alignment and structure
>pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. Length = 198 Back     alignment and structure
>pdb|1PNU|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 197 Back     alignment and structure
>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 Length = 225 Back     alignment and structure
>pdb|1NWX|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 204 Back     alignment and structure
>pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria Length = 205 Back     alignment and structure
>pdb|1P85|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 201 Back     alignment and structure
>pdb|2GYA|C Chain C, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 198 Back     alignment and structure
>pdb|2FTC|D Chain D, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 175 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3bbo_G293 Ribosomal protein L4; large ribosomal subunit, spi 6e-84
2zjr_C205 50S ribosomal protein L4; ribosome, large ribosoma 1e-78
3v2d_F210 50S ribosomal protein L4; ribosome associated inhi 1e-77
3r8s_E201 50S ribosomal protein L4; protein biosynthesis, RN 6e-76
1dmg_A225 Ribosomal protein L4; alpha-beta, ribosome, RNA, S 2e-75
2ftc_D175 Mitochondrial ribosomal protein L4 isoform A, mito 1e-67
1vq8_C246 50S ribosomal protein L4E; ribosome 50S, protein-p 1e-32
2wwb_H362 60S ribosomal protein L4-B; ribosome, protein EXIT 2e-30
3iz5_D 405 60S ribosomal protein L4 (L4P); eukaryotic ribosom 2e-25
4a17_C 410 RPL4, ribosomal protein L3; eukaryotic ribosome, r 5e-25
2zkr_c 421 60S ribosomal protein L4; protein-RNA complex, 60S 1e-22
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 293 Back     alignment and structure
 Score =  252 bits (646), Expect = 6e-84
 Identities = 166/281 (59%), Positives = 204/281 (72%), Gaps = 3/281 (1%)

Query: 3   ASFSSLSFFSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGE 62
            S S    F S+   +S S        L  P+S  +     L + S+L   LPIL+F+GE
Sbjct: 5   TSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIP-LPILNFSGE 63

Query: 63  KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGR 122
           K+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGR
Sbjct: 64  KVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGR 123

Query: 123 ARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGK 182
           ARRGS  +PLRPGGGV+FGPKPRDW+IK+NKKE+RLA+STAIASA      +        
Sbjct: 124 ARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE--N 181

Query: 183 FERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILD 242
           FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTPR+LNLFD+L+
Sbjct: 182 FEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLN 241

Query: 243 AETLVLTPSTVDFLNGRYGVEFEGDGDEEEEESEAREAGEE 283
           AE LV T  T+ +LN RYGV+   D DEEEEE E  E  ++
Sbjct: 242 AEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDD 282
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ... Length = 205 Back     alignment and structure
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ... Length = 210 Back     alignment and structure
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ... Length = 201 Back     alignment and structure
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1 Length = 225 Back     alignment and structure
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D Length = 175 Back     alignment and structure
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ... Length = 246 Back     alignment and structure
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D Length = 362 Back     alignment and structure
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C Length = 410 Back     alignment and structure
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
3bbo_G293 Ribosomal protein L4; large ribosomal subunit, spi 100.0
3v2d_F210 50S ribosomal protein L4; ribosome associated inhi 100.0
1dmg_A225 Ribosomal protein L4; alpha-beta, ribosome, RNA, S 100.0
3r8s_E201 50S ribosomal protein L4; protein biosynthesis, RN 100.0
2zjr_C205 50S ribosomal protein L4; ribosome, large ribosoma 100.0
2ftc_D175 Mitochondrial ribosomal protein L4 isoform A, mito 100.0
3j21_D255 50S ribosomal protein L4P; archaea, archaeal, KINK 100.0
4a17_C 410 RPL4, ribosomal protein L3; eukaryotic ribosome, r 100.0
2zkr_c 421 60S ribosomal protein L4; protein-RNA complex, 60S 100.0
1vq8_C246 50S ribosomal protein L4E; ribosome 50S, protein-p 100.0
3iz5_D 405 60S ribosomal protein L4 (L4P); eukaryotic ribosom 100.0
2wwb_H362 60S ribosomal protein L4-B; ribosome, protein EXIT 100.0
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=5.3e-89  Score=636.10  Aligned_cols=269  Identities=65%  Similarity=1.031  Sum_probs=202.6

Q ss_pred             cccccccccccccccccCCC-CCCCCccCCCCCCCCCCCCCcceeecccCCCceeeccCCCeEeEEEcCCCCCCCCchHH
Q 023032            3 ASFSSLSFFSSTIFLTSSSN-KVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARA   81 (288)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~~~~G~~~g~ieL~~~vF~~~~~~d   81 (288)
                      +++++|||||||+|+|++++ .++++.++++  +++..+.+|+.++++|+ +++|||++|+++|+++||+.||+.++|+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~M~-~v~V~~~~G~~~g~veLp~~VF~~~~r~d   82 (293)
T 3bbo_G            6 SSSLSLSFFSSSLFSSKSRNFSSKPILKLPS--SSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARA   82 (293)
T ss_dssp             -----------------------------------------------CCE-EEECCCSSSCCCSEEEECSSSSSSCCCTT
T ss_pred             cCcceeeeeeccccccCccccCccchhhcCC--CCCcccccccchhhcCc-eeEEEcCCCCEeeeEEcCHHHhCCCccHH
Confidence            45778999999999999987 6666677755  44446788998999987 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCCccCcccccCCCCCccccccCHHHHHHHHH
Q 023032           82 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAIS  161 (288)
Q Consensus        82 llh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPkPRd~~~klNkK~rrlAl~  161 (288)
                      |||++|+||++|+|||||+||||+||+||||||||||||||||+|++|+|+|||||++|||+||||++|||||+|++||+
T Consensus        83 lih~vV~~q~an~RQGTa~tKtRaEV~GgGRKp~RQKGTGRAR~Gs~rsP~~rGGGvafGPkPRdy~~klNKK~rrlAlr  162 (293)
T 3bbo_G           83 VVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALS  162 (293)
T ss_dssp             TTTTHHHHHHHHHCCCCCCCCSSTTCSSSCCCCCCCSSSCSCSCCSSSCSSSSSSCCSSCCCSCCCCCCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccCceeeeeccCCCceeccCCCCccccCcccCCceecCceecCCcCcchhhhcCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhc
Q 023032          162 TAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDIL  241 (288)
Q Consensus       162 sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL  241 (288)
                      +|||+++  |+|+|||++...++.||||+++++|+++|++.++++|||+.+.++|+++|+||||+|+++++++|||||||
T Consensus       163 sALSak~--g~LvVvd~~~~~~~~~KTK~~~~~Lk~lg~~~~~k~LlV~~~~d~nl~~A~RNIp~V~v~~v~~LNvydLl  240 (293)
T 3bbo_G          163 TAIASAV--GNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL  240 (293)
T ss_dssp             HHHHHHH--HTTCCCCCCGGGTTCCSSHHHHTTHHHHSCSSCSSSCCEECCCSSSCCTTTSSSSSCEECCSSCCCHHHHH
T ss_pred             HHHHHHc--CCEEEEecccccccCCCHHHHHHHHHHcCCcccCceEEEEcCCChhHHHHHhCCCCcEEEeeCceeHHHhh
Confidence            9999999  88999999821268899999999999999964357899998889999999999999999999999999999


Q ss_pred             CCCcEEEcHHHHHHHHHhhCCCCCCCCCchhhhHH
Q 023032          242 DAETLVLTPSTVDFLNGRYGVEFEGDGDEEEEESE  276 (288)
Q Consensus       242 ~~~~lViT~~Al~~L~e~~~~~~~~~~~~~~~~~~  276 (288)
                      ++++||||++||++|+++|+...+|++||||||+|
T Consensus       241 ~~~~lViT~~Al~~Lee~l~~~~~~~~~~~~~~~~  275 (293)
T 3bbo_G          241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEE  275 (293)
T ss_dssp             HSSCEECCTTHHHHHHHHSCC--------------
T ss_pred             CCCcEEEEHHHHHHHHHHhccccccccccchhhhc
Confidence            99999999999999999999999996666555555
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ... Back     alignment and structure
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1 Back     alignment and structure
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ... Back     alignment and structure
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ... Back     alignment and structure
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D Back     alignment and structure
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C Back     alignment and structure
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ... Back     alignment and structure
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d2zjrc1197 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococc 4e-39
d2gycc1198 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherich 1e-37
d1dmga_225 c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga mar 6e-36
d2j01f1208 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus t 1e-35
d1vqoc1246 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon 4e-33
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus radiodurans [TaxId: 1299]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L4
superfamily: Ribosomal protein L4
family: Ribosomal protein L4
domain: Ribosomal protein L4
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  134 bits (337), Expect = 4e-39
 Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 10/203 (4%)

Query: 54  LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
           + ++   G +  E  L L    P+    V+H  +   + ++RRGTAST TR +V   GRK
Sbjct: 3   INVIGQNGGRTIE--LPL----PEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRK 56

Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
            Y QK TG AR G    P   GGGV FGPKPR +   + ++ ++L ++ AIAS       
Sbjct: 57  MYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKL 116

Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
           + V+ FD      KTK FI   ++ GLD  +K   +  +  EN  +++RN+  + +L   
Sbjct: 117 VAVDGFD--IADAKTKNFISWAKQNGLDGTEKVLLVTDD--ENTRRAARNVSWVSVLPVA 172

Query: 234 TLNLFDILDAETLVLTPSTVDFL 256
            +N++DIL  + LV+  + ++ +
Sbjct: 173 GVNVYDILRHDRLVIDAAALEIV 195
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]} Length = 198 Back     information, alignment and structure
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima [TaxId: 2336]} Length = 225 Back     information, alignment and structure
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 246 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d2gycc1198 Ribosomal protein L4 {Escherichia coli [TaxId: 562 100.0
d1dmga_225 Ribosomal protein L4 {Thermotoga maritima [TaxId: 100.0
d2zjrc1197 Ribosomal protein L4 {Deinococcus radiodurans [Tax 100.0
d2j01f1208 Ribosomal protein L4 {Thermus thermophilus [TaxId: 100.0
d1vqoc1246 Ribosomal protein L4 {Archaeon Haloarcula marismor 100.0
d1vqoc1246 Ribosomal protein L4 {Archaeon Haloarcula marismor 86.46
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L4
superfamily: Ribosomal protein L4
family: Ribosomal protein L4
domain: Ribosomal protein L4
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-72  Score=494.40  Aligned_cols=197  Identities=29%  Similarity=0.477  Sum_probs=189.9

Q ss_pred             CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCC
Q 023032           53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPL  132 (288)
Q Consensus        53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~  132 (288)
                      ++.|.|..    |+++|++.+|+.+++.+|||++|+||++|+|||||+||||+||+|||||||+||||||||+||+|||+
T Consensus         2 ~l~~~~~~----~~i~l~~~vF~~~~~~~llh~~v~~~~a~~R~gt~~tKtRseV~g~gkKp~~QKGTGrAR~Gs~rsP~   77 (198)
T d2gycc1           2 ELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPI   77 (198)
T ss_dssp             CEEEECTT----CCSCCCEECCCSCCCHHHHTTTSSSCTTCCSCCCCSSCSCCCCCCSCSSCSCCCCCCCBTTBCCSCSS
T ss_pred             eeEecCCC----CeEEeCHHHhCCCcCHHHHHHHHHHHHHhccCCCcccceehhccCCccCcccccCCCCCCCcCcchhh
Confidence            67888866    46999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032          133 RPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME  212 (288)
Q Consensus       133 ~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~  212 (288)
                      |||||+||||+||+|+++||||+|++|+++|||.|+++++++|||++.  ++.||||++.++|+++++.   ++|||+++
T Consensus        78 ~~gGGva~GP~pr~~~~kl~kK~r~~al~~aLs~k~~~~~l~vvd~~~--~~~~kTk~~~~~l~~~~~~---~~Liv~~~  152 (198)
T d2gycc1          78 WRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFS--VEAPKTKLLAQKLKDMALE---DVLIITGE  152 (198)
T ss_dssp             SSSCCCSSCSCCSSSCCCCCTTTHHHHHHHHHHHTTSSSSCCEECGGG--GTCCSSHHHHHHHHTTTCG---GGTTTCCC
T ss_pred             cccCceecCccccCeEeeHHHHHHHHHHHHHHHHHHhcCCeEEEeecc--ccCCcHHHHHHHHhhhccc---eeEEecCc
Confidence            999999999999999999999999999999999999999999999985  7889999999999999884   68999999


Q ss_pred             cchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHHHHHHHH
Q 023032          213 VSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNG  258 (288)
Q Consensus       213 ~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e  258 (288)
                      .++|+++|+||||+|+++++++|||||||+++.||||++||+.|||
T Consensus       153 ~~enl~~S~RNI~~v~v~~~~~lNvydlLk~~~lVit~~Al~~leE  198 (198)
T d2gycc1         153 LDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEE  198 (198)
T ss_dssp             CSSSCCGGGSSSSSCCCCCSSSCCHHHHTTTSCCCEEHHHHHHHHC
T ss_pred             ccHHHHHHHhCcCCceEeecCCccHHHHhcCCeEEEEHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999985
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure